Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 282 of 320
Found at i:90907333 original size:398 final size:398
Alignment explanation
Indices: 90906597--90907396 Score: 1591
Period size: 398 Copynumber: 2.0 Consensus size: 398
90906587 TCACATGGGA
90906597 ATTAGGCGTGATCTTCATCTCCAAGTACGTCTTATTAGTTGCTGCATACAATTTTTGCAATGTCA
1 ATTAGGCGTGATCTTCATCTCCAAGTACGTCTTATTAGTTGCTGCATACAATTTTTGCAATGTCA
90906662 AAGGAAGAGAAAGAAATGTTCTGCACGGTGTTGAAGGATATAAAGGTTTCGAATACGTATGCATC
66 AAGGAAGAGAAAGAAATGTTCTGCACGGTGTTGAAGGATATAAAGGTTTCGAATACGTATGCATC
90906727 AAATATTTCTCGATGTGTAAGTCTTAAAGATCGAAGACTATATTCATTAAAATCACATGACCATC
131 AAATATTTCTCGATGTGTAAGTCTTAAAGATCGAAGACTATATTCATTAAAATCACATGACCATC
*
90906792 ACATCTTGATGCAAGATCTACTTCCAGTTGTTTTACGGTGTTGTATGTCAAAGAATGTAACGTCC
196 ACATCTTGATGCAAGATCTACTTCCAGTTGTTTTACGGTGTTGTATGTCAAAGAAGGTAACGTCC
90906857 TGTATAATTGAACTGTCTAATATAATGAAAACAATTTGTGGCAAAGTTCTGGATGTTGAAGAACT
261 TGTATAATTGAACTGTCTAATATAATGAAAACAATTTGTGGCAAAGTTCTGGATGTTGAAGAACT
90906922 TGAAAAAGTACTAGATCGAGCCGCTTTGACATTATGCAATTTGGAGAAGATCTTTCCACCTTCCT
326 TGAAAAAGTACTAGATCGAGCCGCTTTGACATTATGCAATTTGGAGAAGATCTTTCCACCTTCCT
90906987 TCTTCACT
391 TCTTCACT
90906995 ATTAGGCGTGATCTTCATCTCCAAGTACGTCTTATTAGTTGCTGCATACAATTTTTGCAATGTCA
1 ATTAGGCGTGATCTTCATCTCCAAGTACGTCTTATTAGTTGCTGCATACAATTTTTGCAATGTCA
90907060 AAGGAAGAGAAAGAAATGTTCTGCACGGTGTTGAAGGATATAAAGGTTTCGAATACGTATGCATC
66 AAGGAAGAGAAAGAAATGTTCTGCACGGTGTTGAAGGATATAAAGGTTTCGAATACGTATGCATC
90907125 AAATATTTCTCGATGTGTAAGTCTTAAAGATCGAAGACTATATTCATTAAAATCACATGACCATC
131 AAATATTTCTCGATGTGTAAGTCTTAAAGATCGAAGACTATATTCATTAAAATCACATGACCATC
90907190 ACATCTTGATGCAAGATCTACTTCCAGTTGTTTTACGGTGTTGTATGTCAAAGAAGGTAACGTCC
196 ACATCTTGATGCAAGATCTACTTCCAGTTGTTTTACGGTGTTGTATGTCAAAGAAGGTAACGTCC
90907255 TGTATAATTGAACTGTCTAATATAATGAAAACAATTTGTGGCAAAGTTCTGGATGTTGAAGAACT
261 TGTATAATTGAACTGTCTAATATAATGAAAACAATTTGTGGCAAAGTTCTGGATGTTGAAGAACT
90907320 TGAAAAAGTACTAGATCGAGCCGCTTTGACATTATGCAATTTGGAGAAGATCTTTCCACCTTCCT
326 TGAAAAAGTACTAGATCGAGCCGCTTTGACATTATGCAATTTGGAGAAGATCTTTCCACCTTCCT
90907385 TCTTCACT
391 TCTTCACT
90907393 ATTA
1 ATTA
90907397 TGGTGCACCT
Statistics
Matches: 401, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
398 401 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (398 bp):
ATTAGGCGTGATCTTCATCTCCAAGTACGTCTTATTAGTTGCTGCATACAATTTTTGCAATGTCA
AAGGAAGAGAAAGAAATGTTCTGCACGGTGTTGAAGGATATAAAGGTTTCGAATACGTATGCATC
AAATATTTCTCGATGTGTAAGTCTTAAAGATCGAAGACTATATTCATTAAAATCACATGACCATC
ACATCTTGATGCAAGATCTACTTCCAGTTGTTTTACGGTGTTGTATGTCAAAGAAGGTAACGTCC
TGTATAATTGAACTGTCTAATATAATGAAAACAATTTGTGGCAAAGTTCTGGATGTTGAAGAACT
TGAAAAAGTACTAGATCGAGCCGCTTTGACATTATGCAATTTGGAGAAGATCTTTCCACCTTCCT
TCTTCACT
Found at i:90910496 original size:21 final size:21
Alignment explanation
Indices: 90910470--90910517 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
90910460 TCAACTTATA
90910470 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
90910491 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
90910512 GCGGAG
1 GCGGAG
90910518 CAGAACAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:90910877 original size:22 final size:22
Alignment explanation
Indices: 90910852--90910915 Score: 110
Period size: 22 Copynumber: 2.9 Consensus size: 22
90910842 AGTCCTAGTC
90910852 TTTAGCGGCGTTTTTTAGAACT
1 TTTAGCGGCGTTTTTTAGAACT
* *
90910874 TTTAGCGACGTTTTTTAGAATT
1 TTTAGCGGCGTTTTTTAGAACT
90910896 TTTAGCGGCGTTTTTTAGAA
1 TTTAGCGGCGTTTTTTAGAA
90910916 AAGCGCCGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.20, C:0.11, G:0.22, T:0.47
Consensus pattern (22 bp):
TTTAGCGGCGTTTTTTAGAACT
Found at i:90910975 original size:43 final size:43
Alignment explanation
Indices: 90910896--90911032 Score: 184
Period size: 43 Copynumber: 3.2 Consensus size: 43
90910886 TTTTAGAATT
* * * *
90910896 TTTAGCGGCGTTTTTTAGAAAAGCGCCGTTATAAGTCTTGGTC
1 TTTAGCGGCGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTC
* * * *
90910939 TTTAGTGGCATTTTTTATATAAGTGCCGCTAAAAGTCCTGGTC
1 TTTAGCGGCGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTC
* *
90910982 TTTAACGGCGTTTTTTATATAAGCGCCGCTATAAGTCCTAGTC
1 TTTAGCGGCGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTC
90911025 TTTAGCGG
1 TTTAGCGG
90911033 TGTTACATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTC
Found at i:90911674 original size:21 final size:21
Alignment explanation
Indices: 90911648--90911687 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
90911638 CTTAGATATG
90911648 AAAAAT-ATTAGTTTGTAAAAT
1 AAAAATGATTAGTTT-TAAAAT
*
90911669 AAAAATGGTTAGTTTTAAA
1 AAAAATGATTAGTTTTAAA
90911688 CATAGGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (21 bp):
AAAAATGATTAGTTTTAAAAT
Found at i:90913822 original size:14 final size:14
Alignment explanation
Indices: 90913803--90913832 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
90913793 TTTAATTTTA
*
90913803 ATTTAATTGTATAC
1 ATTTAATTGAATAC
90913817 ATTTAATTGAATAC
1 ATTTAATTGAATAC
90913831 AT
1 AT
90913833 GCATTTACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (14 bp):
ATTTAATTGAATAC
Found at i:90919314 original size:18 final size:18
Alignment explanation
Indices: 90919291--90919328 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
90919281 CCGGATTCCC
*
90919291 CTCTCTTCTCTCTCCCTT
1 CTCTCTTCCCTCTCCCTT
*
90919309 CTCTCTTCCCTCTCTCTT
1 CTCTCTTCCCTCTCCCTT
90919327 CT
1 CT
90919329 TTTTTTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCTCTTCCCTCTCCCTT
Found at i:90919326 original size:11 final size:12
Alignment explanation
Indices: 90919295--90919327 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
90919285 ATTCCCCTCT
90919295 CTTCTCTC-TCC
1 CTTCTCTCTTCC
90919306 CTTCTCTCTTCC
1 CTTCTCTCTTCC
90919318 C-TCTCTCTTC
1 CTTCTCTCTTC
90919328 TTTTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:90919871 original size:23 final size:23
Alignment explanation
Indices: 90919827--90919872 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
90919817 GTATTACCAT
*
90919827 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
90919850 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
90919873 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:90932753 original size:74 final size:71
Alignment explanation
Indices: 90932635--90932871 Score: 241
Period size: 74 Copynumber: 3.3 Consensus size: 71
90932625 TTTGTTTTTC
** * *
90932635 AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGAACACGCTGAGATAATTTCAATTTCT
90932700 GTTGTTAAAA
66 G-T-TT--AA
* *
90932710 AAAATCAACTCATA-TGCGAGAAATGAGTTGAACCTCAGAACACGCTGAGGTAATTTCGATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGAACACGCTGAGATAATTTCAATTTCT
*
90932774 GTTTCA
66 GTTTAA
* * * * * *
90932780 AAATTCAACTTATATTGCGAGAAATGAGTTG-ACATCA-AGACAC-TTAAGGT-ATTTCAATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGA-ACACGCTGAGATAATTTCAATTTC
90932841 TGTTTCAAA
65 TGTTT--AA
**
90932850 AAAATTGACTCATATTGCGAGA
1 AAAATCAACTCATATTGCGAGA
90932872 GGTGAGTTAA
Statistics
Matches: 140, Mismatches: 18, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
68 15 0.11
69 6 0.04
70 41 0.29
71 16 0.11
72 2 0.01
73 1 0.01
74 45 0.32
75 14 0.10
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAACCTCAGAACACGCTGAGATAATTTCAATTTCT
GTTTAA
Found at i:90932847 original size:68 final size:69
Alignment explanation
Indices: 90932631--90933228 Score: 411
Period size: 71 Copynumber: 8.6 Consensus size: 69
90932621 AATTTTTGTT
** * *
90932631 TTTCAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAAATGAGTTGA-CCTCAAGACACGCTGAGGTAATTTCAAT
90932696 TTCTG
65 TTCTG
*
90932701 TTGTTAAAAAAAATCAACTCATA-TGCGAGAAATGAGTTGAACCTC-AGAACACGCTGAGGTAAT
1 -T-TT---CAAAATCAACTCATATTGCGAGAAATGAGTTG-ACCTCAAG-ACACGCTGAGGTAAT
*
90932764 TTCGATTTCTG
59 TTCAATTTCTG
* * * *
90932775 TTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGACATCAAGACAC-TTAAGGT-ATTTCAAT
1 TTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGACCTCAAGACACGCTGAGGTAATTTCAAT
90932838 TTCTG
65 TTCTG
** * * ** **
90932843 TTTCAAAAAAATTGACTCATATTGCGAG--A-G-G-TGA-GTTAAG---C-CT--TTTAATTTTT
1 TTTC---AAAATCAACTCATATTGCGAGAAATGAGTTGACCTCAAGACACGCTGAGGTAATTTCA
* * *
90932896 GTTTTTCA
63 ATTTCT-G
** * * ** * ** *
90932904 AATC-AACTCATATTGC-TAGAG-GTGAGTTGA---G-CCTCAGGACACGCTGAGGTAATTTCAA
1 TTTCAAAATCA-ACT-CATATTGCGAGAAATGAGTTGACCTCAAGACACGCTGAGGTAATTTCAA
*
90932962 TTTCTT
64 TTTCTG
*
90932968 TTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTCA
1 TTTC--AAAATCAACTCATATTGCGAGAAATGAGTTGA-CCTCAAGACACGCTGAGGTAATTTCA
90933032 ATTTCTG
63 ATTTCTG
* *
90933039 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 -TTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGA-CCTCAAGACACGCTGAGGTAATTTCA
90933104 ATTTCTG
63 ATTTCTG
* *
90933111 CTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA--CTTAGGTATTTTC
1 --TTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGA-CCTCAAGACACGCTGAGGTAATTTC
90933174 AATTTCTG
62 AATTTCTG
**
90933182 CTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGGGCTCAAGA
1 --TTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGACCTCAAGA
90933229 TCACTTGCGA
Statistics
Matches: 424, Mismatches: 62, Indels: 83
0.75 0.11 0.15
Matches are distributed among these distances:
57 5 0.01
58 5 0.01
59 6 0.01
60 9 0.02
61 4 0.01
62 1 0.00
63 2 0.00
64 6 0.01
65 14 0.03
66 6 0.01
67 12 0.03
68 17 0.04
69 9 0.02
70 43 0.10
71 140 0.33
72 37 0.09
73 51 0.12
74 42 0.10
75 15 0.04
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (69 bp):
TTTCAAAATCAACTCATATTGCGAGAAATGAGTTGACCTCAAGACACGCTGAGGTAATTTCAATT
TCTG
Found at i:90933071 original size:71 final size:73
Alignment explanation
Indices: 90932885--90933228 Score: 519
Period size: 71 Copynumber: 4.8 Consensus size: 73
90932875 GAGTTAAGCC
* * * ** *
90932885 TTTT-AATTTTTGTTTTTC-AAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
90932947 CTGAGGTA
66 TTGAGGTA
* *
90932955 ATTTCAATTTCT--TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGCTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
90933018 GTTGAGGTA
65 GTTGAGGTA
90933027 -TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
90933090 TTGAGGTA
66 TTGAGGTA
90933098 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC-
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
90933162 TT-AGGTA
66 TTGAGGTA
*
90933169 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG-GGCTCAAGA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
90933229 TCACTTGCGA
Statistics
Matches: 258, Mismatches: 9, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
69 5 0.02
70 11 0.04
71 129 0.50
72 63 0.24
73 50 0.19
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:90933110 original size:268 final size:269
Alignment explanation
Indices: 90932451--90933153 Score: 919
Period size: 268 Copynumber: 2.7 Consensus size: 269
90932441 GCTTTCCAAG
* * *
90932451 AAAAATCAACT-ATATTGCGAGAGATGAGTTAAGCCTCAAGACAC-TTGAGGTATTTTTAA-TT-
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTCAATTTC
* * * * * **
90932512 T-TTTTC-AAA-TCAACACATATTGC-AGAAGTCAGTTGAGCCTC-GGGCACGCCGAGGTATTTT
65 TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
* * * *
90932572 TAGTTTAT-TTT--TAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
130 CAATTTCTGTTTCAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
*
90932634 CAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTC
195 CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTC
90932699 TGTTGTTAAA
260 TGTTGTTAAA
* * *
90932709 AAAAATCAACTCATA-TGCGAGAAATGAGTTGAACCTC-AGAACACGCTGAGGTAATTTCGATTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGT-ATTTCAATTT
* * *
90932772 CTG-TTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGA-CATCAAGACAC-TTAAGGTA-TT
64 CTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
90932833 TCAATTTCTGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
129 TCAATTTCTGTTTC---AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGT
* *
90932898 TTTTC-AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
191 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAA
*
90932962 TTTCT-TT-TT-CA
256 TTTCTGTTGTTAAA
90932973 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCT
90933038 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* ** *
90933103 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
131 AATTTCTG--TTTCAAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
90933154 CAAGACACTT
Statistics
Matches: 385, Mismatches: 34, Indels: 42
0.84 0.07 0.09
Matches are distributed among these distances:
257 2 0.01
258 34 0.09
259 13 0.03
260 3 0.01
261 5 0.01
262 11 0.03
263 23 0.06
264 43 0.11
265 70 0.18
266 14 0.04
267 74 0.19
268 89 0.23
270 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (269 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTTCT
GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
AATTTCTGTTTCAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATAATTTCAATTTCT
GTTGTTAAA
Found at i:90933174 original size:143 final size:145
Alignment explanation
Indices: 90932885--90933228 Score: 517
Period size: 144 Copynumber: 2.4 Consensus size: 145
90932875 GAGTTAAGCC
* * * ** *
90932885 TTTT-AATTTTTGTTTTTC-AAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
90932947 CTGAGGTAATTTCAATTTCTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 CTGAGGTAATTTCAATTTCTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
90933012 AGACACGTTGAGGTA
131 AGACACGTTGAGGTA
90933027 -TTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
* * *
90933090 TTGAGGTATTTTCAATTTCTGCTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
66 CTGAGGTAATTTCAATTTCT--TTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
90933154 CAAGACAC-TT-AGGTA
129 CAAGACACGTTGAGGTA
*
90933169 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG-GGCTCAAGA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
90933229 TCACTTGCGA
Statistics
Matches: 186, Mismatches: 9, Indels: 13
0.89 0.04 0.06
Matches are distributed among these distances:
141 8 0.04
142 15 0.08
143 77 0.41
144 81 0.44
145 5 0.03
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (145 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
CTGAGGTAATTTCAATTTCTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGACACGTTGAGGTA
Found at i:90952216 original size:69 final size:69
Alignment explanation
Indices: 90952042--90952216 Score: 208
Period size: 70 Copynumber: 2.5 Consensus size: 69
90952032 CTTTCCAAGG
* ** *
90952042 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACATTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTTAATTTTG
90952107 TTTT
66 TTTT
* ** * * *
90952111 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTTAATTT-
90952176 TGTTTT
64 TGTTTT
** *
90952182 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
90952217 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
69 31 0.34
70 54 0.60
71 5 0.06
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACCGAGGTATTTTTAATTTTG
TTTT
Found at i:90952413 original size:72 final size:72
Alignment explanation
Indices: 90952220--90952829 Score: 388
Period size: 72 Copynumber: 8.6 Consensus size: 72
90952210 TAAGCCTTTT
*
90952220 AATTTTTGTTTTTCAAAA-TCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
90952283 GATAATTTC
65 G-TAATTTC
* * ** *
90952292 AATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGAACACGCT
1 AATTTCTGTT-TT---CAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
90952357 GAGGTAATTTC
62 GAGGTAATTTC
*
90952368 GATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG-TGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
90952432 TATTTTC
66 TAATTTC
* * *** * **
90952439 AATTTCTGTTTTCAAAAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT-TTTA-A--TTTT
1 AATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
* *
90952499 TGT-TTTTC
64 GGTAATTTC
** *** * * * * * * * * ** * * *
90952507 AAAATC--AACTC-ATATT--GC-GAGA--G-GTGAGTTGAGCCTCAG-GACACG-CTGA-GGTA
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAG-TTGAGCCTCAGGAC--ACGCTG
**
90952560 ATTTCAATTTC
63 AGGT-AATTTC
* *** ** * *
90952571 --TGT-T-TTCAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
90952632 TATTTTC
66 TAATTTC
** * *
90952639 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
90952704 TATTTTC
66 TAATTTC
** * *
90952711 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
90952776 GTATTTTC
65 GTAATTTC
**
90952784 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTG
90952830 GGCTCAAGAT
Statistics
Matches: 435, Mismatches: 70, Indels: 65
0.76 0.12 0.11
Matches are distributed among these distances:
58 8 0.02
59 4 0.01
61 3 0.01
62 6 0.01
63 8 0.02
64 4 0.01
65 1 0.00
66 4 0.01
68 19 0.04
69 17 0.04
70 4 0.01
71 27 0.06
72 148 0.34
73 116 0.27
75 6 0.01
76 34 0.08
77 26 0.06
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TAATTTC
Found at i:90952698 original size:271 final size:271
Alignment explanation
Indices: 90952042--90952761 Score: 1114
Period size: 271 Copynumber: 2.7 Consensus size: 271
90952032 CTTTCCAAGG
* * *
90952042 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACATTGAGGTATTTTTAATTT-T
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
* * * * *
90952106 TTTTTCAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 GTTTTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
90952170 AGTTTATGTTTT--AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
131 AATTTCTGTTTTCAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
90952233 CAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGCTGAGGATAATTTCAATTTC
196 CAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGCTGAGGATAATTTCAATTTC
90952298 TGTTGTTAAAAA
261 TGTTGTT-AAAA
* * *
90952310 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-AGAACACGCTGAGGTAATTTCGATTTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTCAATTTC
*
90952374 TGTTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG-TGAGGTATTTT
65 TGTTTTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
90952438 CAATTTCTGTTTTCAAAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTT
130 CAATTTCTGTTTTC--AAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTT
90952503 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-TAATTTCAA
193 TTTCAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGATAATTTCAA
*
90952567 TTTCTGTT-TTCAAA
257 TTTCTGTTGTTAAAA
*
90952581 AAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
* * *
90952646 GTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
66 GTTTTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* ** *
90952711 AATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
131 AATTTCTG-TTTTCAAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCCT
90952762 CAAGACACGT
Statistics
Matches: 414, Mismatches: 26, Indels: 20
0.90 0.06 0.04
Matches are distributed among these distances:
267 2 0.00
268 54 0.13
269 30 0.07
270 38 0.09
271 116 0.28
272 50 0.12
273 96 0.23
274 28 0.07
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (271 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
GTTTTCAAAATTCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTCTGTTTTCAAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTT
CAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCAGGACACGCTGAGGATAATTTCAATTTC
TGTTGTTAAAA
Found at i:90952766 original size:73 final size:72
Alignment explanation
Indices: 90952489--90952838 Score: 571
Period size: 73 Copynumber: 4.8 Consensus size: 72
90952479 GAGTTAAGCC
* ** *
90952489 TTTT-AATTTTTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
90952552 CTGAGGTA
65 TTGAGGTA
*
90952560 ATTTCAATTTCTGTTTTCAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
90952625 GTTGAGGTA
64 GTTGAGGTA
90952634 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
90952699 TGAGGTA
66 TGAGGTA
90952706 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
90952771 TTGAGGTA
65 TTGAGGTA
*
90952779 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTG-GGCTCAAGA
1 TTTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
90952839 TCACATGCCG
Statistics
Matches: 266, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
71 8 0.03
72 82 0.31
73 114 0.43
74 62 0.23
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGT
TGAGGTA
Found at i:90953024 original size:79 final size:79
Alignment explanation
Indices: 90952929--90953079 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 79
90952919 CAAAGTTGCA
*
90952929 AGTCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCACAGATCTTATCTCCCTAAGAAT-A
1 AGTCTTATCTCCCTAAGCAATAGTGGAGCAAATCA-AACC-CAG-TCTTATCTCCCTAAGAATCA
90952992 GT-GAGCAGATCGCATC
63 GTGGAGCAGATCGCATC
* * * *
90953008 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCCAGTCTTATCTCCCTAAGCATCAGTG
1 AGTCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAACCCAGTCTTATCTCCCTAAGAATCAGTG
90953073 GAGCAGA
66 GAGCAGA
90953080 CGAAAAAAAC
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
77 17 0.27
78 6 0.09
79 39 0.61
80 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (79 bp):
AGTCTTATCTCCCTAAGCAATAGTGGAGCAAATCAAACCCAGTCTTATCTCCCTAAGAATCAGTG
GAGCAGATCGCATC
Found at i:90953061 original size:40 final size:40
Alignment explanation
Indices: 90952929--90953079 Score: 186
Period size: 40 Copynumber: 3.8 Consensus size: 40
90952919 CAAAGTTGCA
* *
90952929 AGTCTTATCTCCCTAAGCAATAGTGGAGCAGA-CAGAACCAC
1 AGTCTTATCTCCCTAAGCAATAGTGGAGCAGATCA-CATC-C
*
90952970 AGATCTTATCTCCCTAAG-AATAGT-GAGCAGATCGCAT-C
1 AG-TCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCC
* *
90953008 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAAATCACATCC
1 AGTCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCC
90953048 AGTCTTATCTCCCTAAGC-ATCAGTGGAGCAGA
1 AGTCTTATCTCCCTAAGCAAT-AGTGGAGCAGA
90953080 CGAAAAAAAC
Statistics
Matches: 96, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
37 15 0.16
38 8 0.08
39 12 0.12
40 37 0.39
41 9 0.09
42 15 0.16
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
AGTCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCC
Found at i:90954173 original size:18 final size:18
Alignment explanation
Indices: 90954150--90954187 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
90954140 CCGGATTCCC
*
90954150 CTCTCTTCTCTCTCCCTT
1 CTCTCTTCCCTCTCCCTT
*
90954168 CTCTCTTCCCTCTCTCTT
1 CTCTCTTCCCTCTCCCTT
90954186 CT
1 CT
90954188 TTTTTTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCTCTTCCCTCTCCCTT
Found at i:90954185 original size:11 final size:12
Alignment explanation
Indices: 90954154--90954186 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
90954144 ATTCCCCTCT
90954154 CTTCTCTC-TCC
1 CTTCTCTCTTCC
90954165 CTTCTCTCTTCC
1 CTTCTCTCTTCC
90954177 C-TCTCTCTTC
1 CTTCTCTCTTC
90954187 TTTTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:90954675 original size:3 final size:3
Alignment explanation
Indices: 90954660--90954721 Score: 52
Period size: 3 Copynumber: 20.0 Consensus size: 3
90954650 GTTACTTTTA
* * * * *
90954660 TAT TAT TAG TAT TAT TAG TAT TAC CAT TAT TAT TAT TAT GTAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
*
90954706 TAT ATAT TTT TAT TAT
1 TAT -TAT TAT TAT TAT
90954722 GTACGTGTAT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:90954718 original size:23 final size:22
Alignment explanation
Indices: 90954664--90954724 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
90954654 CTTTTATATT
*
90954664 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
90954685 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
90954707 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
90954725 CGTGTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:90954731 original size:23 final size:23
Alignment explanation
Indices: 90954687--90954732 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
90954677 GTATTACCAT
*
90954687 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
90954710 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
90954733 CATATATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:90954827 original size:3 final size:3
Alignment explanation
Indices: 90954819--90954851 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
90954809 TATTCCAATG
*
90954819 TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
90954852 GTCTATGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:90962910 original size:15 final size:15
Alignment explanation
Indices: 90962890--90962922 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
90962880 CAATAGGTGA
90962890 TTACAAATTATTATC
1 TTACAAATTATTATC
90962905 TTACAAATTATTATC
1 TTACAAATTATTATC
90962920 TTA
1 TTA
90962923 ACACATCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (15 bp):
TTACAAATTATTATC
Found at i:90966124 original size:15 final size:15
Alignment explanation
Indices: 90966104--90966137 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
90966094 ATTGCATTTG
90966104 AAAAAAT-ATTGTAAA
1 AAAAAATGATT-TAAA
90966119 AAAAAATGATTTAAA
1 AAAAAATGATTTAAA
90966134 AAAA
1 AAAA
90966138 TAATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.83
16 3 0.17
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (15 bp):
AAAAAATGATTTAAA
Found at i:90967190 original size:93 final size:92
Alignment explanation
Indices: 90967077--90967245 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 92
90967067 TCACATTTTG
*
90967077 AAAAGAGTCAAAACGCTTTTTTTAAAT-GAAAACATTGACTAAAACATTATTATTTTTTTAATGA
1 AAAAGAGTCAAAACACTTTTTTTAAATAG-AAACATTGACTAAAACATTATTA-TTTTTTAATGA
90967141 TGTTGACATGACAGCTATTGTGGTAATTA
64 TGTTGACATGACAGCTATTGTGGTAATTA
** ** *
90967170 AAAAGAGTCAAGTCACTTTTTTTAAATAGAAATGTTGACTAAAACATTATTATTTTTTAGTGATG
1 AAAAGAGTCAAAACACTTTTTTTAAATAGAAACATTGACTAAAACATTATTATTTTTTAATGATG
90967235 TTGACATGACA
66 TTGACATGACA
90967246 ACCATTATGA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
92 23 0.33
93 45 0.65
94 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (92 bp):
AAAAGAGTCAAAACACTTTTTTTAAATAGAAACATTGACTAAAACATTATTATTTTTTAATGATG
TTGACATGACAGCTATTGTGGTAATTA
Found at i:90967532 original size:14 final size:14
Alignment explanation
Indices: 90967487--90967533 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
90967477 AAGTATAAAA
90967487 TTATATGTTTTTTAT
1 TTATAT-TTTTTTAT
* *
90967502 TTTTATTTTTAGT-T
1 TTATATTTTT-TTAT
90967516 TTATATTTTTTTAT
1 TTATATTTTTTTAT
90967530 TTAT
1 TTAT
90967534 GAAATTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
13 1 0.04
14 19 0.73
15 6 0.23
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (14 bp):
TTATATTTTTTTAT
Found at i:90968096 original size:31 final size:32
Alignment explanation
Indices: 90968061--90968126 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
90968051 AATGTCAATA
* *
90968061 TAACTC-TTTTTAAAAGGTTAACGGTCAAATT
1 TAACTCTTTTTTAAAAGATTAACGGCCAAATT
*
90968092 TAACTCTTTTTTAAAAGATTAATGGCCAAATT
1 TAACTCTTTTTTAAAAGATTAACGGCCAAATT
90968124 TAA
1 TAA
90968127 TTAAAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
31 6 0.19
32 25 0.81
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (32 bp):
TAACTCTTTTTTAAAAGATTAACGGCCAAATT
Found at i:90970581 original size:25 final size:25
Alignment explanation
Indices: 90970531--90970581 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
90970521 TTATTTAAAA
* *
90970531 TCAATTTAAAACTGAATTGTTTCTT
1 TCAATTTAAAACTGAATTATTACTT
90970556 TCAATTTAAAACTGAATTATTACTT
1 TCAATTTAAAACTGAATTATTACTT
90970581 T
1 T
90970582 TTCTTTTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (25 bp):
TCAATTTAAAACTGAATTATTACTT
Found at i:90972522 original size:18 final size:19
Alignment explanation
Indices: 90972476--90972523 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
90972466 TAATTTAATT
*
90972476 TTTTCATATTTAAAATAAA
1 TTTTAATATTTAAAATAAA
* * *
90972495 TTATATTATTT-AAATATA
1 TTTTAATATTTAAAATAAA
90972513 TTTTAATATTT
1 TTTTAATATTT
90972524 TGATCTTTTA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATATTTAAAATAAA
Found at i:90983763 original size:15 final size:16
Alignment explanation
Indices: 90983730--90983763 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
90983720 GAAAATATAA
90983730 AAAATTATATTTGCTT
1 AAAATTATATTTGCTT
90983746 AAAATTATATTT-CTT
1 AAAATTATATTTGCTT
90983761 AAA
1 AAA
90983764 TGGAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (16 bp):
AAAATTATATTTGCTT
Found at i:90985257 original size:21 final size:21
Alignment explanation
Indices: 90985227--90985274 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
90985217 CCCGTGTGAC
*
90985227 TCACACGGCCGTGTCACTAGA
1 TCACACGGCCATGTCACTAGA
* * *
90985248 TCACATGGCCATGTCGCTAGG
1 TCACACGGCCATGTCACTAGA
90985269 TCACAC
1 TCACAC
90985275 AACTGTGTTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (21 bp):
TCACACGGCCATGTCACTAGA
Found at i:90986156 original size:18 final size:18
Alignment explanation
Indices: 90986130--90986167 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
90986120 ATCAGTCAAT
*
90986130 ATTTTTCAATATCAATCA
1 ATTTATCAATATCAATCA
*
90986148 ATTTATCAATATCATTCA
1 ATTTATCAATATCAATCA
90986166 AT
1 AT
90986168 AACAGTCAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTATCAATATCAATCA
Found at i:90986199 original size:39 final size:40
Alignment explanation
Indices: 90986149--90986230 Score: 121
Period size: 39 Copynumber: 2.1 Consensus size: 40
90986139 TATCAATCAA
90986149 TTTATCAATATCATTCAATAACAGTCAGTCATTCAGAACC
1 TTTATCAATATCATTCAATAACAGTCAGTCATTCAGAACC
* * * *
90986189 TTTAT-AATATCATTTAGTAACAGTCGGTCATTCAGTACC
1 TTTATCAATATCATTCAATAACAGTCAGTCATTCAGAACC
90986228 TTT
1 TTT
90986231 TTTACCCTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
39 33 0.87
40 5 0.13
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (40 bp):
TTTATCAATATCATTCAATAACAGTCAGTCATTCAGAACC
Found at i:90986426 original size:44 final size:44
Alignment explanation
Indices: 90986368--90986454 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
90986358 GAATTAAACC
*
90986368 GAAGTAACAGTAATAGTACGACACACATGGTGCCTCATCGACTT
1 GAAGTAACAGTAATAGTACGACACACATAGTGCCTCATCGACTT
**
90986412 GAAGTCAA-AGTAATAGTACGACACTTATAGTGCCTCATCGACT
1 GAAGT-AACAGTAATAGTACGACACACATAGTGCCTCATCGACT
90986455 CAAGGTCGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (44 bp):
GAAGTAACAGTAATAGTACGACACACATAGTGCCTCATCGACTT
Found at i:90986467 original size:44 final size:44
Alignment explanation
Indices: 90986376--90986467 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
90986366 CCGAAGTAAC
* *
90986376 AGTAATAGTACGACACACATGGTGCCTCATCGACTTGAAGTCAA
1 AGTAATAGTACGACACACATAGTGCCTCATCGACTTCAAGTCAA
** *
90986420 AGTAATAGTACGACACTTATAGTGCCTCATCGAC-TCAAGGTCGA
1 AGTAATAGTACGACACACATAGTGCCTCATCGACTTCAA-GTCAA
90986464 AGTA
1 AGTA
90986468 TCCCTGAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (44 bp):
AGTAATAGTACGACACACATAGTGCCTCATCGACTTCAAGTCAA
Found at i:90987631 original size:16 final size:16
Alignment explanation
Indices: 90987601--90987647 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
90987591 CTTTCCCTTC
90987601 TCTGTTTCGTTTTATAT
1 TCTGTTTC-TTTTATAT
* *
90987618 TCTGTTTTTTTTATGT
1 TCTGTTTCTTTTATAT
*
90987634 TTTGTTTCTTTTAT
1 TCTGTTTCTTTTAT
90987648 TACATGCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.09, C:0.09, G:0.11, T:0.72
Consensus pattern (16 bp):
TCTGTTTCTTTTATAT
Found at i:90987827 original size:16 final size:16
Alignment explanation
Indices: 90987802--90987890 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 16
90987792 ATTTAATTTA
*
90987802 ATTATCATATAAATAT
1 ATTATAATATAAATAT
*
90987818 CTTATAATAT-AAT-T
1 ATTATAATATAAATAT
* *
90987832 ATTTTAA-ATTAATAT
1 ATTATAATATAAATAT
*
90987847 AATATAATAT-AATAT
1 ATTATAATATAAATAT
*
90987862 ATTACTAATATATATAT
1 ATTA-TAATATAAATAT
*
90987879 TTTATAAT-TAAA
1 ATTATAATATAAA
90987891 ATCTAAGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
13 2 0.03
14 9 0.16
15 20 0.34
16 20 0.34
17 7 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATAATATAAATAT
Found at i:90987830 original size:5 final size:5
Alignment explanation
Indices: 90987820--90987877 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
90987810 ATAAATATCT
* * *
90987820 TATAA TATAA T-TAT TTTAA -ATTAA TATAA TATAA TATAA TATAT TACTAA
1 TATAA TATAA TATAA TATAA TA-TAA TATAA TATAA TATAA TATAA TA-TAA
90987870 TAT-A TATA
1 TATAA TATA
90987878 TTTTATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
4 7 0.16
5 31 0.72
6 5 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (5 bp):
TATAA
Found at i:90987861 original size:15 final size:15
Alignment explanation
Indices: 90987802--90987886 Score: 75
Period size: 16 Copynumber: 5.5 Consensus size: 15
90987792 ATTTAATTTA
*
90987802 ATTATCATATAAATAT
1 ATTATAATAT-AATAT
*
90987818 CTTATAATATAAT-T
1 ATTATAATATAATAT
*
90987832 ATTTTAA-ATTAATAT
1 ATTATAATA-TAATAT
*
90987847 AATATAATATAATAT
1 ATTATAATATAATAT
90987862 ATTACTAATATATATAT
1 ATTA-TAATATA-ATAT
*
90987879 TTTATAAT
1 ATTATAAT
90987887 TAAAATCTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
13 1 0.02
14 10 0.18
15 18 0.32
16 20 0.36
17 7 0.12
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATATAATAT
Found at i:90991767 original size:6 final size:6
Alignment explanation
Indices: 90991748--90991797 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
90991738 ATATAATTAT
* *
90991748 AAAATA ATAA-A AAAATA AAAATA AAAATA CAAAACA AAATATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA AAA-ATA AAAATA
90991797 A
1 A
90991798 TTATATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
5 4 0.11
6 23 0.62
7 10 0.27
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:90991775 original size:12 final size:12
Alignment explanation
Indices: 90991748--90991797 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
90991738 ATATAATTAT
*
90991748 AAAATAATAA-A
1 AAAATAAAAATA
90991759 AAAATAAAAATA
1 AAAATAAAAATA
*
90991771 AAAATACAAAACA
1 AAAATA-AAAATA
90991784 AAATATAAAAATA
1 AAA-ATAAAAATA
90991797 A
1 A
90991798 TTATATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 9 0.27
12 7 0.21
13 14 0.42
14 3 0.09
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAAATA
Found at i:90991781 original size:20 final size:20
Alignment explanation
Indices: 90991753--90991797 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
90991743 ATTATAAAAT
90991753 AATAAAAAA-ATAAAAATAAA
1 AATAAAAAACA-AAAAATAAA
* *
90991773 AATACAAAACAAAATATAAA
1 AATAAAAAACAAAAAATAAA
90991793 AATAA
1 AATAA
90991798 TTATATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (20 bp):
AATAAAAAACAAAAAATAAA
Found at i:90994662 original size:26 final size:26
Alignment explanation
Indices: 90994631--90994738 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
90994621 TGAAATGCCC
*
90994631 ATCATGGAACATTTACCTAAGCCATT
1 ATCATGGAACATTTACCTAACCCATT
90994657 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
90994683 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
90994709 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
90994735 ATCA
1 ATCA
90994739 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:90998493 original size:40 final size:40
Alignment explanation
Indices: 90998408--90998543 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 40
90998398 CTCGAGAATA
* * ** *
90998408 TAAAGTGGATAGGATTCGTTCCTGATTCAATATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
90998448 CAAAGTGGATAGGATTTGTTCCTGATTCACTGTGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * * *
90998488 TAAAGTGAATAAGATTTATTCTTGATTCACTATGGTAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
90998528 TAAGGCGGATAGGATT
1 TAAAGTGGATAGGATT
90998544 ACGGTTACAT
Statistics
Matches: 77, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:90998676 original size:79 final size:77
Alignment explanation
Indices: 90998545--90998695 Score: 214
Period size: 79 Copynumber: 1.9 Consensus size: 77
90998535 GATAGGATTA
* * *
90998545 CGGTTACATGATATATGATCCATTATGGTAACCTAAGGTGGATAGGATTTGACCTGAAAAGGGTA
1 CGGTTACACGATACATGATCCATTATGATAACCTAAGGTGGATAGGATTTGA-CTGAAAA-GGTA
90998610 ATCCTGATTCGCTT
64 ATCCTGATTCGCTT
* * *
90998624 CGGTTACACGATACATGATTCC-TTATGATAACTTAAGGTGGGTAGGATTTGACTTAAAAGGTAA
1 CGGTTACACGATACATGA-TCCATTATGATAACCTAAGGTGGATAGGATTTGACTGAAAAGGTAA
90998688 TCCTGATT
65 TCCTGATT
90998696 TACTACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
77 13 0.20
78 6 0.09
79 43 0.66
80 3 0.05
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (77 bp):
CGGTTACACGATACATGATCCATTATGATAACCTAAGGTGGATAGGATTTGACTGAAAAGGTAAT
CCTGATTCGCTT
Found at i:90999978 original size:23 final size:25
Alignment explanation
Indices: 90999952--90999998 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
90999942 TATCATTCAT
*
90999952 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
90999975 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
90999999 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:91000319 original size:46 final size:43
Alignment explanation
Indices: 91000269--91000600 Score: 343
Period size: 46 Copynumber: 7.7 Consensus size: 43
91000259 TGCCATAGAG
* *
91000269 TCTTTCAACTATGGTCTTACTCATTTTCTATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CA--TTCTATCAGGTTGCCATGGTA
* * * * *
91000315 TCTTTCAACCATGGTCGTATTCTTTACATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTA-CCATT-C-TATCAGGTTGCCATGGTA
*
91000361 TCTTTCAACCATGGTCTTACACATCTCATATCAGGTGGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CAT-TC-TATCAGGTTGCCATGGTA
91000407 TCTTTCAACCATGGTCTTA-CA--C-A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTA
91000445 TCTTTCAACCATGGTCTTA-CA--C-A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTA
*
91000483 TCTTTCAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTAC-CA-TTC-TATCAGGTTGCCATGGTA
91000529 TCTTTCAACCATGGTCTTA-CA--C-A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTA
91000567 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTAC-CA-TTC-TATCAG
91000601 AGAGCACACT
Statistics
Matches: 250, Mismatches: 15, Indels: 42
0.81 0.05 0.14
Matches are distributed among these distances:
38 104 0.42
39 2 0.01
40 4 0.02
41 2 0.01
43 2 0.01
44 6 0.02
45 3 0.01
46 126 0.50
47 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (43 bp):
TCTTTCAACCATGGTCTTACCATTCTATCAGGTTGCCATGGTA
Found at i:91000443 original size:38 final size:38
Alignment explanation
Indices: 91000392--91000589 Score: 315
Period size: 38 Copynumber: 5.0 Consensus size: 38
91000382 CATCTCATAT
*
91000392 CAGGTGGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
91000430 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
91000468 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
91000506 TTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 ---C-----AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
91000552 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
91000590 TTTCATATCA
Statistics
Matches: 151, Mismatches: 1, Indels: 16
0.90 0.01 0.10
Matches are distributed among these distances:
38 112 0.74
41 1 0.01
43 1 0.01
46 37 0.25
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:91000496 original size:122 final size:123
Alignment explanation
Indices: 91000303--91000590 Score: 461
Period size: 122 Copynumber: 2.3 Consensus size: 123
91000293 TTTCTATCAT
*
91000303 GTTGCCATGGTATCTTTCAACCATGGTCGTATTCTTTACATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTC-T-TAC---ACA--TCACGTTGCCATGGTATCTTTCA
91000368 ACCATGGTCTTACACATCTCATATCAGGTGGCCATGGTATCTTTCAACCATGGTCTTACACACAG
59 ACCATGGTCTTACACATCTCATATCAGGTGGCCATGGTATCTTTCAACCATGGTCTTACACACAG
*
91000433 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA-CAGGTTGCCATGGTATCTTTCAACCATGG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCACGTTGCCATGGTATCTTTCAACCATGG
* * *
91000497 TCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
66 TCTTACACATCTCATATCAGGTGGCCATGGTATCTTTCAACCATGGTCTTACACACAG
91000555 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
91000591 TTCATATCAG
Statistics
Matches: 152, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
122 118 0.78
125 3 0.02
128 2 0.01
129 1 0.01
130 28 0.18
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (123 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATCACGTTGCCATGGTATCTTTCAACCATGG
TCTTACACATCTCATATCAGGTGGCCATGGTATCTTTCAACCATGGTCTTACACACAG
Found at i:91000519 original size:84 final size:84
Alignment explanation
Indices: 91000431--91000597 Score: 334
Period size: 84 Copynumber: 2.0 Consensus size: 84
91000421 TCTTACACAC
91000431 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGTTGCCATGGTATCTTTCAACCATG
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGTTGCCATGGTATCTTTCAACCATG
91000496 GTCTTACACATTTCATATT
66 GTCTTACACATTTCATATT
91000515 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGTTGCCATGGTATCTTTCAACCATG
1 AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGTTGCCATGGTATCTTTCAACCATG
91000580 GTCTTACACATTTCATAT
66 GTCTTACACATTTCATAT
91000598 CAGAGAGCAC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (84 bp):
AGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGTTGCCATGGTATCTTTCAACCATG
GTCTTACACATTTCATATT
Found at i:91005412 original size:23 final size:25
Alignment explanation
Indices: 91005386--91005432 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
91005376 TATCATTCAT
*
91005386 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
91005409 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
91005433 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:91005753 original size:46 final size:45
Alignment explanation
Indices: 91005693--91005996 Score: 377
Period size: 46 Copynumber: 7.0 Consensus size: 45
91005683 TTTGACGTGA
* * * * *
91005693 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CA-TTTCATATCAGGT
91005739 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAGGT
91005785 TGCCATGGTATCTTTCAACCATGGTCTTA-CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
* *
91005823 TTCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAGGT
*
91005869 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAGGT
91005915 TGCCATGGTATCTTTCAACCATGGTCTTA-CA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
91005953 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-CATTTCATATCAG
91005997 AGAGCACACT
Statistics
Matches: 229, Mismatches: 12, Indels: 34
0.83 0.04 0.12
Matches are distributed among these distances:
38 66 0.29
39 2 0.01
40 3 0.01
41 2 0.01
43 2 0.01
44 4 0.02
45 6 0.03
46 144 0.63
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACCATTTCATATCAGGT
Found at i:91005882 original size:84 final size:85
Alignment explanation
Indices: 91005737--91005986 Score: 356
Period size: 84 Copynumber: 3.0 Consensus size: 85
91005727 TTTCTGTCAT
91005737 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACA-ATTTCATATCAGGTTGCCATGGTATCTTTCA
91005802 ACCATGGTCTTACACA-C-AG
65 ACCATGGTCTTACACATCTAG
*
91005821 GTTTCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACA-ATTTCATATCAGGTTGCCATGGTATCTTTCA
91005886 ACCATGGTCTTACACATTTCATATTAG
65 ACCATGGTCTTACACA--TC----TAG
91005913 GTTGCCATGGTATCTTTCAACCATGGTCTTAC-A---C--A-CAGGTTGCCATGGTATCTTTCAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACAATTTCATATCAGGTTGCCATGGTATCTTTCAA
91005971 CCATGGTCTTACACAT
66 CCATGGTCTTACACAT
91005987 TTCATATCAG
Statistics
Matches: 155, Mismatches: 3, Indels: 18
0.88 0.02 0.10
Matches are distributed among these distances:
82 1 0.01
84 117 0.75
85 1 0.01
87 2 0.01
90 1 0.01
92 33 0.21
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (85 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACAATTTCATATCAGGTTGCCATGGTATCTTTCAA
CCATGGTCTTACACATCTAG
Found at i:91005936 original size:130 final size:130
Alignment explanation
Indices: 91005693--91005996 Score: 504
Period size: 130 Copynumber: 2.3 Consensus size: 130
91005683 TTTGACGTGA
* * * * *
91005693 TGCCATAGTGTCTTTCAACTATGGTCTTAC-TCATTTTC-TGTCATGTTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACAT-A-TTTCATATCAGGTTGCCATGGTATCTTTCA
91005756 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
64 ACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
91005821 GT
129 GT
*
91005823 TTCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
91005888 CATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
66 CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
*
91005953 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
91005997 AGAGCACACT
Statistics
Matches: 163, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
129 4 0.02
130 158 0.97
131 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (130 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAGGT
Found at i:91010956 original size:16 final size:16
Alignment explanation
Indices: 91010937--91010976 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
91010927 AAATATTAAA
91010937 ATATTATATCATTATT
1 ATATTATATCATTATT
*
91010953 ATATTATATTATTATT
1 ATATTATATCATTATT
91010969 ATTATTAT
1 A-TATTAT
91010977 TAAAATAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATTATATCATTATT
Found at i:91010965 original size:3 final size:3
Alignment explanation
Indices: 91010938--91010978 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
91010928 AATATTAAAA
*
91010938 TAT TA- TAT CAT TAT TA- TAT TA- TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
91010979 AAATAAAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
2 6 0.18
3 27 0.82
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:91012143 original size:48 final size:50
Alignment explanation
Indices: 91012057--91012153 Score: 137
Period size: 48 Copynumber: 2.0 Consensus size: 50
91012047 AAGTGTCGTA
*
91012057 TTACTATTATTACTTCGGATAAATCCGATGAGGTACTGAGTACTGTATTG
1 TTACTATTATTACTTCGGATAAATCCGATGAGGCACTGAGTACTGTATTG
* *
91012107 TTACTGTT-TTACTTCGG-TAAAGT-CGATGAGGCACTGAGTGCTGTATT
1 TTACTATTATTACTTCGGATAAA-TCCGATGAGGCACTGAGTACTGTATT
91012154 AGTGTGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
48 26 0.60
49 10 0.23
50 7 0.16
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (50 bp):
TTACTATTATTACTTCGGATAAATCCGATGAGGCACTGAGTACTGTATTG
Found at i:91012888 original size:48 final size:48
Alignment explanation
Indices: 91012804--91012896 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
91012794 CTGAAATGTC
* *
91012804 TGGTAATACTCCGTAACCCTATTCCGGTGACGGATAAGGGTTGGGCTT
1 TGGTAATACTCCGTAACCCTATTCCGGCGACAGATAAGGGTTGGGCTT
**
91012852 TGGTAATACTCCGTAACCCTATTTTGGCGACAGATAAGGGTTGGG
1 TGGTAATACTCCGTAACCCTATTCCGGCGACAGATAAGGGTTGGG
91012897 GATGTTACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (48 bp):
TGGTAATACTCCGTAACCCTATTCCGGCGACAGATAAGGGTTGGGCTT
Found at i:91013441 original size:2 final size:2
Alignment explanation
Indices: 91013434--91013471 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
91013424 GCAGTACCAG
91013434 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
91013472 AGGGGGGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:91014671 original size:30 final size:30
Alignment explanation
Indices: 91014618--91014674 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
91014608 ACAGCCATGA
* *
91014618 CACACGGGCGTGTGGCCTGCCCGTGTGTAT
1 CACACAGGCGTGTGGCCTACCCGTGTGTAT
**
91014648 CACACAGGCGTGTGGTTTACCCGTGTG
1 CACACAGGCGTGTGGCCTACCCGTGTG
91014675 AAAATTCCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.12, C:0.28, G:0.35, T:0.25
Consensus pattern (30 bp):
CACACAGGCGTGTGGCCTACCCGTGTGTAT
Found at i:91015175 original size:36 final size:36
Alignment explanation
Indices: 91015135--91015206 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
91015125 ATCTGGAAGA
91015135 AAAACTCTTGGTCTCCTTTTTCACTTAGTTTTCATT
1 AAAACTCTTGGTCTCCTTTTTCACTTAGTTTTCATT
91015171 AAAACTCTTGGTCTCCTTTTTCACTTAGTTTTCATT
1 AAAACTCTTGGTCTCCTTTTTCACTTAGTTTTCATT
91015207 TCTATTTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.08, T:0.50
Consensus pattern (36 bp):
AAAACTCTTGGTCTCCTTTTTCACTTAGTTTTCATT
Found at i:91022801 original size:43 final size:43
Alignment explanation
Indices: 91022738--91022844 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 43
91022728 ATGGTTTATT
* * * *
91022738 AATTACCGGTCCAAGATAAATCCC-ATCTCCAACATATA-ATTAG
1 AATTACCAGTCCAGGCTAAATCCCAAT-TCCAACATA-AGATCAG
* * *
91022781 GATTACCAGTCCAGGCTAAATCCCAATTTCAACGTAAGATCAG
1 AATTACCAGTCCAGGCTAAATCCCAATTCCAACATAAGATCAG
*
91022824 AATTACTAGTCCAGGCTAAAT
1 AATTACCAGTCCAGGCTAAAT
91022845 TCTGTCTTTA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 1 0.02
43 50 0.94
44 2 0.04
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.25
Consensus pattern (43 bp):
AATTACCAGTCCAGGCTAAATCCCAATTCCAACATAAGATCAG
Found at i:91024557 original size:11 final size:11
Alignment explanation
Indices: 91024541--91024571 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
91024531 ATATTACATG
91024541 AAATAATAATA
1 AAATAATAATA
91024552 AAATAATAATA
1 AAATAATAATA
91024563 AAAT-ATAAT
1 AAATAATAAT
91024572 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAATAATAATA
Found at i:91028253 original size:22 final size:21
Alignment explanation
Indices: 91028228--91028292 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
91028218 AAAACCCGAA
91028228 TTTGAATGTATATTTTTTTTCT
1 TTTGAATGTATATTTTTTTT-T
* * *
91028250 TTTGACTATATATTTTTCTTT
1 TTTGAATGTATATTTTTTTTT
*
91028271 TTTAAATAGTATGCATTTTTTT
1 TTTGAAT-GTAT--ATTTTTTT
91028293 AAAGAAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 6 0.18
22 20 0.61
24 7 0.21
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.65
Consensus pattern (21 bp):
TTTGAATGTATATTTTTTTTT
Found at i:91028823 original size:27 final size:26
Alignment explanation
Indices: 91028792--91028854 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
91028782 AGAAAACAGA
91028792 GTGGACAAAACAAAAACCACGAAAAAT
1 GTGGACAAAACAAAAACCAC-AAAAAT
* * **
91028819 GTGGACAAAA-TAAAACTACAAAGCT
1 GTGGACAAAACAAAAACCACAAAAAT
91028844 GTGGACAAAAC
1 GTGGACAAAAC
91028855 TGCGATAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 14 0.45
26 7 0.23
27 10 0.32
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.11
Consensus pattern (26 bp):
GTGGACAAAACAAAAACCACAAAAAT
Found at i:91033411 original size:14 final size:14
Alignment explanation
Indices: 91033392--91033422 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
91033382 AAGCTTATGG
91033392 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
*
91033406 TTTCTTTTTGTTTT
1 TTTCTTTTTCTTTT
91033420 TTT
1 TTT
91033423 ATTAAATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:91035907 original size:12 final size:14
Alignment explanation
Indices: 91035880--91035910 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
91035870 TCATTTAATA
91035880 TTAATATAATTTTT
1 TTAATATAATTTTT
91035894 TTAAT-TAATTTTT
1 TTAATATAATTTTT
91035907 TTAA
1 TTAA
91035911 ATTTTTAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
TTAATATAATTTTT
Found at i:91037879 original size:15 final size:15
Alignment explanation
Indices: 91037856--91037885 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91037846 AGACCGATAG
*
91037856 CATTGTGTCTTACAA
1 CATTATGTCTTACAA
91037871 CATTATGTCTTACAA
1 CATTATGTCTTACAA
91037886 ATAAAACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (15 bp):
CATTATGTCTTACAA
Found at i:91047773 original size:21 final size:21
Alignment explanation
Indices: 91047749--91047802 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
91047739 GATAATTTTA
91047749 AATACAATATAGTTATAAAAC
1 AATACAATATAGTTATAAAAC
* * * *
91047770 AATACAAAAAATTTATAAAAT
1 AATACAATATAGTTATAAAAC
91047791 ATATA-AATATAG
1 A-ATACAATATAG
91047803 AATAAAATAT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
21 22 0.88
22 3 0.12
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.30
Consensus pattern (21 bp):
AATACAATATAGTTATAAAAC
Found at i:91048309 original size:14 final size:14
Alignment explanation
Indices: 91048290--91048319 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91048280 AAGCTTATGG
91048290 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
*
91048304 TTTCTTTTTGTTTT
1 TTTCTTTTTCTTTT
91048318 TT
1 TT
91048320 ATTGAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:91051285 original size:21 final size:20
Alignment explanation
Indices: 91051261--91051312 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
91051251 TTATGCCATA
91051261 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
91051282 TCAGAATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
91051302 TTAGTATTTTA
1 TCAGTATTTTA
91051313 ATTTGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:91051805 original size:26 final size:25
Alignment explanation
Indices: 91051757--91051818 Score: 72
Period size: 24 Copynumber: 2.4 Consensus size: 25
91051747 AGAAAACAGA
91051757 GTGGACAAAACAAAAACCACAAATAAT
1 GTGGACAAAACAAAAACCAC-AA-AAT
* * *
91051784 GTGGACAAAA-TAAAACTACAAAGT
1 GTGGACAAAACAAAAACCACAAAAT
91051808 GTGGACAAAAC
1 GTGGACAAAAC
91051819 TGCGATAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 12 0.39
25 2 0.06
26 7 0.23
27 10 0.32
ACGTcount: A:0.55, C:0.16, G:0.16, T:0.13
Consensus pattern (25 bp):
GTGGACAAAACAAAAACCACAAAAT
Found at i:91055601 original size:16 final size:17
Alignment explanation
Indices: 91055568--91055601 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
91055558 AACAAATCTG
*
91055568 ATAATTTTAAATACAAT
1 ATAATTATAAATACAAT
91055585 ATAATTATAAA-ACAAT
1 ATAATTATAAATACAAT
91055601 A
1 A
91055602 AAAAATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATTATAAATACAAT
Found at i:91073238 original size:29 final size:29
Alignment explanation
Indices: 91073196--91073264 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
91073186 CTCGTTTCCC
91073196 CATAACCACCGCACTACCTTTACTTCAAG
1 CATAACCACCGCACTACCTTTACTTCAAG
* *
91073225 CATAACCACCGCACTCCCTTTATTTCAAG
1 CATAACCACCGCACTACCTTTACTTCAAG
91073254 CATAACCACCG
1 CATAACCACCG
91073265 TACAAACTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.30, C:0.39, G:0.07, T:0.23
Consensus pattern (29 bp):
CATAACCACCGCACTACCTTTACTTCAAG
Found at i:91078472 original size:15 final size:16
Alignment explanation
Indices: 91078439--91078472 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
91078429 AAAATATAAA
91078439 AAAATTATATTTGCTT
1 AAAATTATATTTGCTT
91078455 AAAATTATATTT-CTT
1 AAAATTATATTTGCTT
91078470 AAA
1 AAA
91078473 TGGAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (16 bp):
AAAATTATATTTGCTT
Found at i:91079392 original size:52 final size:52
Alignment explanation
Indices: 91079331--91079434 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
91079321 GTAATCTACA
91079331 TGTATGTTATGTAATAAAATTAACAAAGACTAATTTTTCCATCCAATTTTAG
1 TGTATGTTATGTAATAAAATTAACAAAGACTAATTTTTCCATCCAATTTTAG
91079383 TGTATGTTATGTAATAAAATTAACAAAGACTAATTTTTCCATCCAATTTTAG
1 TGTATGTTATGTAATAAAATTAACAAAGACTAATTTTTCCATCCAATTTTAG
91079435 ATGATTTAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (52 bp):
TGTATGTTATGTAATAAAATTAACAAAGACTAATTTTTCCATCCAATTTTAG
Found at i:91084306 original size:16 final size:17
Alignment explanation
Indices: 91084273--91084306 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
91084263 AACAATTCTG
*
91084273 ATAATTTTAAATACAAT
1 ATAATTATAAATACAAT
91084290 ATAATTATAAA-ACAAT
1 ATAATTATAAATACAAT
91084306 A
1 A
91084307 CGAAAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATTATAAATACAAT
Found at i:91085374 original size:46 final size:46
Alignment explanation
Indices: 91085307--91085399 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
91085297 TTTGTTTGGG
*
91085307 TTGATACTTGATAGAAGTGTGCTATTCTTTTTCTTCTAAATTAAGT
1 TTGATACTTGATAGAAGTGTGCTATTCTTTTTCTTCTAAATCAAGT
91085353 TTGATACTTGATAGAAGTGTGCTATTCTTTTTCTTCTAAATCAAGT
1 TTGATACTTGATAGAAGTGTGCTATTCTTTTTCTTCTAAATCAAGT
91085399 T
1 T
91085400 CTTTTTTTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.26, C:0.12, G:0.15, T:0.47
Consensus pattern (46 bp):
TTGATACTTGATAGAAGTGTGCTATTCTTTTTCTTCTAAATCAAGT
Found at i:91091645 original size:37 final size:37
Alignment explanation
Indices: 91091584--91091803 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
91091574 TACGTATGAT
* *
91091584 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
91091619 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91091656 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
91091693 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91091730 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
91091767 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91091804 TAAAGCTATC
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.05
36 3 0.02
37 164 0.93
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:91091846 original size:52 final size:52
Alignment explanation
Indices: 91091767--91092035 Score: 352
Period size: 52 Copynumber: 5.2 Consensus size: 52
91091757 TAAGTGTAGC
* * ** *
91091767 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
91091820 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
91091872 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
91091918 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
91091970 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
91092022 CACTTTGTCACTTG
1 CACTTT-TCACTTG
91092036 ATCAGAAGTA
Statistics
Matches: 195, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
46 43 0.22
49 1 0.01
52 136 0.70
53 15 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:91091933 original size:98 final size:98
Alignment explanation
Indices: 91091767--91092027 Score: 378
Period size: 98 Copynumber: 2.6 Consensus size: 98
91091757 TAAGTGTAGC
* * *
91091767 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTTCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
*
91091832 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* ** *
91091865 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
91091930 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
91091963 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT
91092028 GTCACTTGAT
Statistics
Matches: 143, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
98 99 0.69
100 1 0.01
104 43 0.30
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:91095220 original size:49 final size:50
Alignment explanation
Indices: 91095165--91095368 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
91095155 TTCGTTTTCT
*
91095165 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
91095214 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
91095263 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
91095321 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
91095369 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:91095335 original size:58 final size:59
Alignment explanation
Indices: 91095249--91095367 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
91095239 TACACGAAAT
91095249 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
91095307 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
91095366 CA
1 CA
91095368 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:91095348 original size:28 final size:28
Alignment explanation
Indices: 91095258--91095348 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
91095248 TCACATATCA
91095258 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
91095286 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
91095316 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
91095344 CTTAC
1 CTTAC
91095349 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:91096682 original size:37 final size:37
Alignment explanation
Indices: 91096621--91096840 Score: 372
Period size: 37 Copynumber: 6.0 Consensus size: 37
91096611 TACGTATGAT
* *
91096621 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
91096656 CACCTATCACTTTATTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91096693 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
91096730 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91096767 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
91096804 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
91096841 TAAAGCTATC
Statistics
Matches: 174, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
35 9 0.05
36 2 0.01
37 163 0.94
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:91096883 original size:52 final size:52
Alignment explanation
Indices: 91096804--91097072 Score: 352
Period size: 52 Copynumber: 5.2 Consensus size: 52
91096794 TAAGTGTAGC
* * ** *
91096804 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
91096857 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
91096909 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
91096955 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
91097007 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
91097059 CACTTTGTCACTTG
1 CACTTT-TCACTTG
91097073 ATCAGAAGTA
Statistics
Matches: 195, Mismatches: 14, Indels: 14
0.87 0.06 0.06
Matches are distributed among these distances:
46 43 0.22
49 1 0.01
52 136 0.70
53 15 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:91096970 original size:98 final size:98
Alignment explanation
Indices: 91096804--91097064 Score: 378
Period size: 98 Copynumber: 2.6 Consensus size: 98
91096794 TAAGTGTAGC
* * *
91096804 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTTTCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
*
91096869 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* ** *
91096902 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
91096967 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
* *
91097000 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTT
91097065 GTCACTTGAT
Statistics
Matches: 143, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
98 99 0.69
100 1 0.01
104 43 0.30
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:91104973 original size:15 final size:15
Alignment explanation
Indices: 91104950--91104979 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91104940 AGACCGATAG
*
91104950 CATTGTGTCTTACAA
1 CATTATGTCTTACAA
91104965 CATTATGTCTTACAA
1 CATTATGTCTTACAA
91104980 ATAAAACATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (15 bp):
CATTATGTCTTACAA
Found at i:91116200 original size:30 final size:30
Alignment explanation
Indices: 91116148--91116213 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
91116138 AACTTATATC
* *
91116148 TTTATCATTTTTAAAGGATTAAATTA-AAT
1 TTTATTATTTTTAAAGGATTAAAGTACAAT
*
91116177 TCTTATTATTTTTAGA-GAGTTAAAGTACAAT
1 T-TTATTATTTTTAAAGGA-TTAAAGTACAAT
91116208 TTTATT
1 TTTATT
91116214 TTTACTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
29 3 0.10
30 24 0.77
31 4 0.13
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (30 bp):
TTTATTATTTTTAAAGGATTAAAGTACAAT
Found at i:91119930 original size:21 final size:21
Alignment explanation
Indices: 91119906--91119947 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
91119896 TTTCAATAGT
91119906 TGCAATTCATGTTACAACTCA
1 TGCAATTCATGTTACAACTCA
91119927 TGCAATTCATGTTACAACTCA
1 TGCAATTCATGTTACAACTCA
91119948 ACCAGCAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (21 bp):
TGCAATTCATGTTACAACTCA
Found at i:91120967 original size:17 final size:17
Alignment explanation
Indices: 91120947--91120979 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91120937 AATAAATAAT
*
91120947 TAAAAAGATTAAAAATC
1 TAAAAAGAGTAAAAATC
91120964 TAAAAAGAGTAAAAAT
1 TAAAAAGAGTAAAAAT
91120980 AATATAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.21
Consensus pattern (17 bp):
TAAAAAGAGTAAAAATC
Found at i:91122064 original size:21 final size:21
Alignment explanation
Indices: 91122038--91122088 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
91122028 AATGTTACAG
91122038 TATATTTAAAATATT-TTTTTA
1 TATATTTAAAAT-TTATTTTTA
*
91122059 TATATTTAGAATTTAATTTTTA
1 TATATTTAAAATTT-ATTTTTA
*
91122081 TATTTTTA
1 TATATTTA
91122089 TTTTTAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.42
22 13 0.50
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TATATTTAAAATTTATTTTTA
Found at i:91122099 original size:29 final size:30
Alignment explanation
Indices: 91122053--91122116 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
91122043 TTAAAATATT
91122053 TTTTTATATATTTAGAATTTAATT-TTTATA
1 TTTTTATATATTTAGAATTTAATTCTTTA-A
91122083 TTTTTAT-T-TTTAAGAATTTAATTCTTTAA
1 TTTTTATATATTT-AGAATTTAATTCTTTAA
91122112 TTTTT
1 TTTTT
91122117 GAATTTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
28 3 0.09
29 18 0.56
30 11 0.34
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (30 bp):
TTTTTATATATTTAGAATTTAATTCTTTAA
Found at i:91122123 original size:29 final size:29
Alignment explanation
Indices: 91122053--91122129 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
91122043 TTAAAATATT
*
91122053 TTTTTATATATTTAGAATTTAATTTTTATA
1 TTTTTATAT-TTAAGAATTTAATTTTTATA
*
91122083 TTTTTATTTTTAAGAATTTAATTCTTTA-A
1 TTTTTATATTTAAGAATTTAATT-TTTATA
91122112 TTTTTGA-ATTTAA-AATTT
1 TTTTT-ATATTTAAGAATTT
91122130 TAGGTCCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 5 0.12
29 24 0.57
30 13 0.31
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.62
Consensus pattern (29 bp):
TTTTTATATTTAAGAATTTAATTTTTATA
Found at i:91126338 original size:21 final size:23
Alignment explanation
Indices: 91126299--91126355 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
91126289 GTTTTAAAAT
* *
91126299 TTGGGCTCAGGTAGTTTTA-GG-A
1 TTGGGCT-AGGTTGGTTTAGGGTA
91126321 TTGGGCTAGGTTGGTTTAGGGTA
1 TTGGGCTAGGTTGGTTTAGGGTA
91126344 TTGGGCTAGGTT
1 TTGGGCTAGGTT
91126356 AGTTGGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 9 0.29
22 9 0.29
23 13 0.42
ACGTcount: A:0.14, C:0.07, G:0.40, T:0.39
Consensus pattern (23 bp):
TTGGGCTAGGTTGGTTTAGGGTA
Found at i:91128880 original size:4 final size:4
Alignment explanation
Indices: 91128871--91128899 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
91128861 ACTTGTAGTT
91128871 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
91128900 AGAAAGGGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:91131596 original size:46 final size:46
Alignment explanation
Indices: 91131543--91131638 Score: 165
Period size: 46 Copynumber: 2.1 Consensus size: 46
91131533 AAGAGAAAAA
*
91131543 GTTAACTCGGATTCCCGGAAATGGGAAATATAAATATAGGGATAGT
1 GTTAACTCGGATTCCCGGAAACGGGAAATATAAATATAGGGATAGT
* *
91131589 GTTAACTCGGATTCCCGGAAACGGGAAATGTATATATAGGGATAGT
1 GTTAACTCGGATTCCCGGAAACGGGAAATATAAATATAGGGATAGT
91131635 GTTA
1 GTTA
91131639 GAGCAAGAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.27
Consensus pattern (46 bp):
GTTAACTCGGATTCCCGGAAACGGGAAATATAAATATAGGGATAGT
Found at i:91140124 original size:22 final size:22
Alignment explanation
Indices: 91140060--91140125 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 22
91140050 GGAATTTTCT
91140060 AAAAATTATATTTTTTAT-TT-
1 AAAAATTATATTTTTTATATTA
* ** * *
91140080 TAAGTTTTTATTTTTAAATTATTA
1 AAAAATTATATTTTT-TA-TATTA
91140104 AAAAATTATATTTTTTATATTA
1 AAAAATTATATTTTTTATATTA
91140126 CTTGCAACCT
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
20 11 0.34
21 1 0.03
22 6 0.19
23 3 0.09
24 11 0.34
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
AAAAATTATATTTTTTATATTA
Found at i:91140556 original size:40 final size:40
Alignment explanation
Indices: 91140512--91140595 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
91140502 CTGCAGAAAG
* *
91140512 AAAACTAAACTAGAGAAGAAGGAATTAAAACCAGAATACA
1 AAAACTAAACTAAAGAAGAAGGAACTAAAACCAGAATACA
* * *
91140552 AAAACTAAACTAAAGAAGAATGAACTAAAATCTGAATACA
1 AAAACTAAACTAAAGAAGAAGGAACTAAAACCAGAATACA
91140592 AAAA
1 AAAA
91140596 GTAGTCTACT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.62, C:0.12, G:0.12, T:0.14
Consensus pattern (40 bp):
AAAACTAAACTAAAGAAGAAGGAACTAAAACCAGAATACA
Found at i:91143414 original size:22 final size:23
Alignment explanation
Indices: 91143376--91143423 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
91143366 CATTCAAGAT
**
91143376 AAAATAATATATAAAACTCTTCA
1 AAAATAATATATAAAACAATTCA
91143399 AAAATAATATAT-AAACAATTCA
1 AAAATAATATATAAAACAATTCA
91143421 AAA
1 AAA
91143424 TATATAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.27
Consensus pattern (23 bp):
AAAATAATATATAAAACAATTCA
Found at i:91143473 original size:25 final size:25
Alignment explanation
Indices: 91143377--91143493 Score: 71
Period size: 25 Copynumber: 4.7 Consensus size: 25
91143367 ATTCAAGATA
* * *
91143377 AAATAATATATAAAACTCTT-CAA-
1 AAATAATATATAAAAATATTAAAAT
*
91143400 AAATAATATATAAACAAT-TCAAAAT
1 AAATAATATATAAA-AATATTAAAAT
* * *
91143425 ATATAATGTGCAAAAAAAGT-TTAAAAT
1 AAATAATAT--ATAAAAA-TATTAAAAT
* * *
91143452 ACATAATATATGAAAATATTAAAGT
1 AAATAATATATAAAAATATTAAAAT
*
91143477 AAATAATGTATAAAAAT
1 AAATAATATATAAAAAT
91143494 TTGAAATGAG
Statistics
Matches: 72, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
23 15 0.21
24 5 0.07
25 32 0.44
26 2 0.03
27 18 0.25
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (25 bp):
AAATAATATATAAAAATATTAAAAT
Found at i:91143669 original size:29 final size:28
Alignment explanation
Indices: 91143631--91143740 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
91143621 ATTAGTATAT
*
91143631 AAATAGAAATAGAAATATAATAAATAGA
1 AAATAAAAATAGAAATATAATAAATAGA
91143659 AATATAAAAATAGTAGAA-AT-ATAAATAGA
1 AA-ATAAAAATAG-A-AATATAATAAATAGA
* * * * *
91143688 TAAATAATAATAGTATTAGAATAACA-AAA
1 -AAATAAAAATAGAAATATAATAA-ATAGA
*
91143717 TAAATATAAATAGAAATATAATAA
1 -AAATAAAAATAGAAATATAATAA
91143741 TAATAGCAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
27 1 0.02
28 3 0.05
29 52 0.81
30 6 0.09
31 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.25
Consensus pattern (28 bp):
AAATAAAAATAGAAATATAATAAATAGA
Found at i:91148504 original size:12 final size:12
Alignment explanation
Indices: 91148487--91148512 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91148477 AAAATAGGGC
91148487 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91148499 TTTAGCGGCGTT
1 TTTAGCGGCGTT
91148511 TT
1 TT
91148513 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:91148646 original size:41 final size:41
Alignment explanation
Indices: 91148567--91148786 Score: 361
Period size: 41 Copynumber: 5.4 Consensus size: 41
91148557 CGTTTTACCA
* *
91148567 AAAACGCCGCTAAAA-ACTGAGCAATAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* *
91148607 AAAACGCCGCTAAAAGACAGAGCTTTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
91148648 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTGGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
* *
91148689 AAAACGCCACTAAAAGACAGAGCATTAGCGTCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
*
91148730 AAAACGCCGCTAAAAGACAGAGCAGTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
91148771 AAAACGCCGCTAAAAG
1 AAAACGCCGCTAAAAG
91148787 TCATATAACT
Statistics
Matches: 166, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
40 15 0.09
41 151 0.91
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGACAGAGCATTAGCGGCGCTTTTGGT
Found at i:91149427 original size:24 final size:24
Alignment explanation
Indices: 91149400--91149448 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
91149390 CGTATATTTA
*
91149400 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
91149424 TTAAAAGTCTATATAAAAATTAAT
1 TTAAAAGTCTATATAAAAATTAAT
91149448 T
1 T
91149449 GTTATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (24 bp):
TTAAAAGTCTATATAAAAATTAAT
Found at i:91149789 original size:7 final size:7
Alignment explanation
Indices: 91149730--91149882 Score: 67
Period size: 7 Copynumber: 21.6 Consensus size: 7
91149720 GAGTTACTAT
*
91149730 TTTAAGG
1 TTTATGG
*
91149737 TTTATAG
1 TTTATGG
*
91149744 ATTATGG
1 TTTATGG
*
91149751 ATTATGGG
1 TTTAT-GG
91149759 TTTATGG
1 TTTATGG
*
91149766 ATTATGG
1 TTTATGG
**
91149773 TTTACAG
1 TTTATGG
91149780 TTTATGG
1 TTTATGG
*
91149787 TTTAAGG
1 TTTATGG
* **
91149794 GTTGGGG
1 TTTATGG
*
91149801 TTTAAGG
1 TTTATGG
91149808 TTTA-GG
1 TTTATGG
*
91149814 TGTTAGGG
1 T-TTATGG
*
91149822 GTTATGG
1 TTTATGG
*
91149829 GTTATGG
1 TTTATGG
*
91149836 GTTATGG
1 TTTATGG
*
91149843 GTTATGG
1 TTTATGG
*
91149850 ATTTAAGG
1 -TTTATGG
*
91149858 GTTAT-G
1 TTTATGG
*
91149864 TTGTATGA
1 TT-TATGG
*
91149872 TTTAGGG
1 TTTATGG
91149879 TTTA
1 TTTA
91149883 GGGGATAAAA
Statistics
Matches: 112, Mismatches: 28, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
6 5 0.04
7 92 0.82
8 15 0.13
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (7 bp):
TTTATGG
Found at i:91149803 original size:21 final size:21
Alignment explanation
Indices: 91149781--91149861 Score: 85
Period size: 21 Copynumber: 3.8 Consensus size: 21
91149771 GGTTTACAGT
91149781 TTATGGTTTAAGGGTT-GGGG
1 TTATGGTTTAAGGGTTAGGGG
*
91149801 TTTAAGGTTT-AGGTGTTAGGGG
1 -TTATGGTTTAAGG-GTTAGGGG
* * *
91149823 TTATGGGTTATGGGTTATGGG
1 TTATGGTTTAAGGGTTAGGGG
91149844 TTATGGATTTAAGGGTTA
1 TTATGG-TTTAAGGGTTA
91149862 TGTTGTATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
20 3 0.06
21 31 0.63
22 15 0.31
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.42
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTAGGGG
Found at i:91150028 original size:14 final size:14
Alignment explanation
Indices: 91150011--91150070 Score: 75
Period size: 14 Copynumber: 4.2 Consensus size: 14
91150001 GGTAAAATGT
91150011 TTTCTGGAAAATAA
1 TTTCTGGAAAATAA
91150025 TTTCTGGAAAATAA
1 TTTCTGGAAAATAA
* *
91150039 TTTCTTGAAAAATGA
1 TTTC-TGGAAAATAA
* *
91150054 TTTATGGAAAATGA
1 TTTCTGGAAAATAA
91150068 TTT
1 TTT
91150071 ACTTTTCTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
14 30 0.73
15 11 0.27
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (14 bp):
TTTCTGGAAAATAA
Found at i:91150071 original size:14 final size:14
Alignment explanation
Indices: 91150004--91150071 Score: 64
Period size: 14 Copynumber: 4.8 Consensus size: 14
91149994 GTTTGCAGGT
* *
91150004 AAAATGTTTTCTGG
1 AAAATGATTTATGG
* *
91150018 AAAATAATTTCTGG
1 AAAATGATTTATGG
* * *
91150032 AAAATAATTTCTTGA
1 AAAATGATTT-ATGG
91150047 AAAATGATTTATGG
1 AAAATGATTTATGG
91150061 AAAATGATTTA
1 AAAATGATTTA
91150072 CTTTTCTGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
14 35 0.76
15 11 0.24
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (14 bp):
AAAATGATTTATGG
Found at i:91150662 original size:22 final size:21
Alignment explanation
Indices: 91150631--91150677 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
91150621 AAATTTATTT
91150631 AAAATTAATATAAAAGA-TATA
1 AAAATTAATATAAAA-ATTATA
91150652 AAAATTCAATATAAAAATTATA
1 AAAATT-AATATAAAAATTATA
91150674 AAAA
1 AAAA
91150678 AGTAAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAAATTAATATAAAAATTATA
Found at i:91150719 original size:40 final size:39
Alignment explanation
Indices: 91150675--91150801 Score: 134
Period size: 40 Copynumber: 3.2 Consensus size: 39
91150665 AAAATTATAA
* * *
91150675 AAAAGTAAAAAATTAACGGCGTTTATGATAAAAACGCTGC
1 AAAAGTAAACAA-TAGCGGCGTTTATGATAAAAACGCCGC
91150715 AAAAG-ACAAGCAATAGCGGCGTTTAT-AT-AAAACGCCGC
1 AAAAGTA-AA-CAATAGCGGCGTTTATGATAAAAACGCCGC
* * *
91150753 AAAAGGCAATCAATAGCGGCGTTTATGATAAAAACACCGC
1 AAAA-GTAAACAATAGCGGCGTTTATGATAAAAACGCCGC
91150793 AAAAAGTAA
1 -AAAAGTAA
91150802 GTTTTTTTAA
Statistics
Matches: 74, Mismatches: 6, Indels: 14
0.79 0.06 0.15
Matches are distributed among these distances:
38 29 0.39
39 7 0.09
40 32 0.43
41 6 0.08
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.18
Consensus pattern (39 bp):
AAAAGTAAACAATAGCGGCGTTTATGATAAAAACGCCGC
Found at i:91150756 original size:38 final size:40
Alignment explanation
Indices: 91150691--91150796 Score: 162
Period size: 38 Copynumber: 2.7 Consensus size: 40
91150681 AAAAAATTAA
*
91150691 CGGCGTTTATGATAAAAACGCTGCAAAAGACAAGCAATAG
1 CGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAATAG
* *
91150731 CGGCGTTTAT-AT-AAAACGCCGCAAAAGGCAATCAATAG
1 CGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAATAG
*
91150769 CGGCGTTTATGATAAAAACACCGCAAAA
1 CGGCGTTTATGATAAAAACGCCGCAAAA
91150797 AGTAAGTTTT
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 33 0.55
39 4 0.07
40 23 0.38
ACGTcount: A:0.42, C:0.20, G:0.21, T:0.18
Consensus pattern (40 bp):
CGGCGTTTATGATAAAAACGCCGCAAAAGACAAGCAATAG
Found at i:91151105 original size:34 final size:34
Alignment explanation
Indices: 91151023--91151105 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
91151013 TGAGTAAGCC
* * *
91151023 ATTTGCCTAAATCATAGTTCCCCCGAAACCCTCAT
1 ATTT-CCTAAATCATAGTTCCCCCAAAACCCTAAA
* * *
91151058 TTTCTCCTAAATCATAGTTCCTCTAAAACCCTAAA
1 ATT-TCCTAAATCATAGTTCCCCCAAAACCCTAAA
91151093 ATTTCCTAAATCA
1 ATTTCCTAAATCA
91151106 AACCCATTTG
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
34 10 0.25
35 29 0.73
36 1 0.03
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.33
Consensus pattern (34 bp):
ATTTCCTAAATCATAGTTCCCCCAAAACCCTAAA
Found at i:91153801 original size:241 final size:242
Alignment explanation
Indices: 91153372--91153807 Score: 829
Period size: 241 Copynumber: 1.8 Consensus size: 242
91153362 GTATGAATTA
*
91153372 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCTAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
91153437 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
66 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
*
91153502 AGCTGTAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
131 AGCTGTAAGATATAATGGATCCTCCATAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
91153567 TCAAAAAGACTTGAAAAAAGTTCTATCGAGTTCATTTACTATTGAAT
196 TCAAAAAGACTTGAAAAAAGTTCTATCGAGTTCATTTACTATTGAAT
*
91153614 ATTTT-TTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGTTGACCTTCTCTCCAACC
1 ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
91153678 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
66 TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
*
91153743 AGCTGTAAGATATAATGGATCTTCCATAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
131 AGCTGTAAGATATAATGGATCCTCCATAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
91153808 AACTTACATA
Statistics
Matches: 190, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
241 185 0.97
242 5 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (242 bp):
ATTTTATTACCATGTAGCTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACC
TTTTTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCG
AGCTGTAAGATATAATGGATCCTCCATAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAAT
TCAAAAAGACTTGAAAAAAGTTCTATCGAGTTCATTTACTATTGAAT
Found at i:91153820 original size:9 final size:9
Alignment explanation
Indices: 91153806--91153864 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
91153796 ATCTTAAAAA
91153806 ATAACTTAC
1 ATAACTTAC
*
91153815 ATAACTCAC
1 ATAACTTAC
91153824 ATAACTTAC
1 ATAACTTAC
*
91153833 ATAATTTAC
1 ATAACTTAC
*
91153842 ATAACTCAC
1 ATAACTTAC
*
91153851 ATAACGTAC
1 ATAACTTAC
91153860 ATAAC
1 ATAAC
91153865 AACTTACGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:91153844 original size:27 final size:27
Alignment explanation
Indices: 91153806--91153864 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
91153796 ATCTTAAAAA
*
91153806 ATAACTTACATAACTCACATAACTTAC
1 ATAACTTACATAACTCACATAACGTAC
*
91153833 ATAATTTACATAACTCACATAACGTAC
1 ATAACTTACATAACTCACATAACGTAC
91153860 ATAAC
1 ATAAC
91153865 AACTTACGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.29
Consensus pattern (27 bp):
ATAACTTACATAACTCACATAACGTAC
Done.