Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 284 of 320
Found at i:91350446 original size:3 final size:3
Alignment explanation
Indices: 91350438--91350530 Score: 50
Period size: 3 Copynumber: 31.7 Consensus size: 3
91350428 ATTTTAATGG
* * * *
91350438 TAA TAA TAA GGAA -AA TAA TAA CAA TAA T-A CAA TAA TAA TAA -AG
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
91350481 TAG TAA TAA AAA TAA AAA TAA CAA TAA TAG TAA AAA T-A TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
91350526 TAA TA
1 TAA TA
91350531 GTAAAAGAAA
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
2 6 0.09
3 56 0.84
4 5 0.07
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (3 bp):
TAA
Found at i:91350476 original size:11 final size:10
Alignment explanation
Indices: 91350451--91350535 Score: 65
Period size: 9 Copynumber: 8.9 Consensus size: 10
91350441 TAATAAGGAA
*
91350451 AATAAT-AAC
1 AATAATAAAT
91350460 AATAATACAAT
1 AATAATA-AAT
91350471 AATAATAAAGT
1 AATAATAAA-T
*
91350482 AGTAATAAA-
1 AATAATAAAT
91350491 AATAA-AAAT
1 AATAATAAAT
*
91350500 AACAAT-AAT
1 AATAATAAAT
*
91350509 AGTAA-AAAT
1 AATAATAAAT
91350518 -ATAATAAAT
1 AATAATAAAT
*
91350527 AATAGTAAA
1 AATAATAAA
91350536 AGAAAATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.10
9 27 0.45
10 9 0.15
11 18 0.30
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAATAAAT
Found at i:91351188 original size:8 final size:8
Alignment explanation
Indices: 91351175--91351221 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
91351165 ATTCGAGAAG
91351175 AAAAATAA
1 AAAAATAA
91351183 AAAAATAA
1 AAAAATAA
91351191 AAAAATAA
1 AAAAATAA
*
91351199 AGAAAA-AG
1 A-AAAATAA
91351207 AAAAA-AA
1 AAAAATAA
*
91351214 ATAAATAA
1 AAAAATAA
91351222 CAATAACCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 9 0.26
8 21 0.62
9 4 0.12
ACGTcount: A:0.85, C:0.00, G:0.04, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:91351210 original size:26 final size:29
Alignment explanation
Indices: 91351172--91351227 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
91351162 TAGATTCGAG
*
91351172 AAGAAAAA-TAAAAAAATAAA-AA-AATA
1 AAGAAAAAGAAAAAAAATAAATAACAATA
91351198 AAGAAAAAGAAAAAAAATAAATAACAATA
1 AAGAAAAAGAAAAAAAATAAATAACAATA
91351227 A
1 A
91351228 CCTTTGCCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.31
27 11 0.42
28 2 0.08
29 5 0.19
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (29 bp):
AAGAAAAAGAAAAAAAATAAATAACAATA
Found at i:91352010 original size:44 final size:44
Alignment explanation
Indices: 91351974--91352680 Score: 340
Period size: 44 Copynumber: 15.8 Consensus size: 44
91351964 AGGACTTGTC
* * * * *
91351974 GCTTTAATCCGCTCCACTGAAACTTCATGGAGATAGGATTAGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
** * *
91352018 GCTTCAATCTGCTCCGTTGCAACTTTAAGGAGATAAGATTGGTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
* * *
91352062 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTAGTA
** * * * *
91352106 ATTTCAA-CATGCTCTACTGCTACTTC-AGAGAGATAAGGTTTGCTA
1 GCTTCAATC-TGCTCCACTGCAACTTCAAG-GAGATAAGATTAG-TA
* * * * *
91352151 TCTTCGATCTACTCCATTGCAACTTC-AGGTAGATAAGATCTA-TT
1 GCTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAAGAT-TAGTA
* * *
91352195 GTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGT-
1 G-CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
* * * *
91352239 GACTTCAAGCTGCTCCACTGCAACTTTAGGGAGATAAGGTT--T-
1 G-CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
* ** * *
91352281 GTTTTGATCTGCTCTA-TGCAACTTC-AGAGAGATAAGATCTGTAATTTATA
1 GCTTCAATCTGCTCCACTGCAACTTCAAG-GAGATAAGA--T-T-A---GTA
* * * *
91352331 GCTTTAATCTGTTCCACTGCAACTTC-AGGGGAATAAGATTCGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAG-ATAAGATTAG-TA
* * * *
91352376 TCTTCAATCTGCTCCTCTGCAACTTCAGGGAGGTAAGACTTA-TA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTAGTA
* * * * *
91352420 ACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTT--T-
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
* * * * *
91352461 GCTAT-GATCTGTTCTACTGCAACTTC-AGATAGATAAGATCTATAATTTATA
1 GCT-TCAATCTGCTCCACTGCAACTTCAAG-GAGATAAGA--T-T-A---GTA
* * * * *
91352512 GCTTCAATCTGTTCCACTGCAACTTTAAGGAAATGAGATTCGCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAG-TA
* * * * *
91352557 TCTTTAGTCTGCTCCACCGTAACTTCAAGGAGATAAGACTT--TA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGA-TTAGTA
* * * * * * *
91352600 TCTTCAACCTGCTCCACTGCTACTTTAGGGAGATAAGGTTTAGTG
1 GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAA-GATTAGTA
*
91352645 GCTTCAATCTGCTCCATTGCAACTTC-AGGAAGATAA
1 GCTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAA
91352681 TATTCGTCAT
Statistics
Matches: 501, Mismatches: 115, Indels: 93
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.00
40 17 0.03
41 36 0.07
42 5 0.01
43 40 0.08
44 175 0.35
45 149 0.30
46 11 0.02
48 2 0.00
49 3 0.01
50 16 0.03
51 44 0.09
52 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTAGTA
Found at i:91352221 original size:134 final size:131
Alignment explanation
Indices: 91351984--91352412 Score: 388
Period size: 134 Copynumber: 3.2 Consensus size: 131
91351974 GCTTTAATCC
* * * * * *
91351984 GCTCCACTGAAACTTCATG-GAGAT-AGGATTAGTAGCTTCAATCTGCTCCGTTGCAACTTTAAG
1 GCTCCACTGCAACTTCA-GAGAGATAAGG-TTTGT-TCTTCGATCTGCTCCATTGCAAC-TTCAG
* * *
91352047 GAGATAAGAT-TGGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTC
62 GAGATAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTC
91352111 AA-CAT
127 AAGC-T
* * *
91352116 GCTCTACTGCTACTTCAGAGAGATAAGGTTTGCTATCTTCGATCTACTCCATTGCAACTTCAGGT
1 GCTCCACTGCAACTTCAGAGAGATAAGGTTTG-T-TCTTCGATCTGCTCCATTGCAACTTCAGG-
* * *
91352181 AGATAAGATCTATTGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTGACTTCA
63 AGATAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCA
91352246 AGCT
128 AGCT
* * *
91352250 GCTCCACTGCAACTTTAGGGAGATAAGGTTTGTT-TT-GATCTGCTCTA-TGCAACTTCAGAGAG
1 GCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTCTTCGATCTGCTCCATTGCAACTTCAG-GAG
* * * * * *
91352312 ATAAGATCTGTAATTTATAGCTTTAATCTGTTCCACTGCAACTTCAGGG-GAATAAGATTCGCTA
65 ATAAGATC--T-A-GTAT--CTTCAGTCTGCTCCACTGCAACTTCAGGGAG-ATAAGACTAG-TA
* *
91352376 TCTTCAATCT
122 ACTTCAAGCT
* * *
91352386 GCTCCTCTGCAACTTCAGGGAGGTAAG
1 GCTCCACTGCAACTTCAGAGAGATAAG
91352413 ACTTATAACT
Statistics
Matches: 249, Mismatches: 33, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
129 21 0.08
130 10 0.04
131 4 0.02
132 29 0.12
133 37 0.15
134 80 0.32
135 35 0.14
136 33 0.13
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (131 bp):
GCTCCACTGCAACTTCAGAGAGATAAGGTTTGTTCTTCGATCTGCTCCATTGCAACTTCAGGAGA
TAAGATCTAGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGTAACTTCAAGC
T
Found at i:91352402 original size:180 final size:180
Alignment explanation
Indices: 91351974--91352640 Score: 663
Period size: 180 Copynumber: 3.7 Consensus size: 180
91351964 AGGACTTGTC
* * * * * * * **
91351974 GCTTTAATCCGCTCCACTGAAACTTCATGGAGATAGGATTAG-TAGCTTCAATCTGCTCCGTTGC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAATCTGCTCCACTGC
* * * ** **
91352038 AACTTTAAGGAGATAAGATTGGTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT
66 AACTTCAAGGAGATAAGACT-ATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTT
* * * **
91352103 GTAATTTCAACATGCTCTACTGCTACTTCAGAGAGATAAG----GT--TTGCTA
130 GT--TTTGATC-TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATA
* * * * * ** * *
91352151 TCTTCGATCTACTCCATTGCAACTTCAGGTAGATAAGA-TCTATTGTCTTCAGTCTGCTCCACTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC-GCTATCTTCAATCTGCTCCACTG
* * *
91352215 CAACTTCAGGGAGATAAGACTAGTGA-CTTCAAGCTGCTCCACTGCAACTTTAGGGAGATAAGGT
65 CAACTTCAAGGAGATAAGACTA-T-ATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT
91352279 TTGTTTTGATCTGCTCTA-TGCAACTTCAGAGAGATAAGATCTGTAATTTATA
128 TTGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATA
* * *
91352331 GCTTTAATCTGTTCCACTGCAACTTCAGGG-GAATAAGATTCGCTATCTTCAATCTGCTCCTCTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAG-ATAAGATTCGCTATCTTCAATCTGCTCCACTG
* * * *
91352395 CAACTTCAGGGAGGTAAGACTTATAACTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTT
65 CAACTTCAAGGAGATAAGAC-TATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTT
* * * * *
91352460 TGCTATGATCTGTTCTACTGCAACTTCAGATAGATAAGATCTATAATTTATA
129 TGTTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATA
* * * * * * * * *
91352512 GCTTCAATCTGTTCCACTGCAACTTTAAGGAAATGAGATTCGCTATCTTTAGTCTGCTCCACCGT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAATCTGCTCCACTGC
* * *
91352577 AACTTCAAGGAGATAAGACTTTATCTTCAACCTGCTCCACTGCTACTTTAGGGAGATAAGGTTT
66 AACTTCAAGGAGATAAGACTATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTT
91352641 AGTGGCTTCA
Statistics
Matches: 405, Mismatches: 69, Indels: 29
0.81 0.14 0.06
Matches are distributed among these distances:
174 19 0.05
175 7 0.02
176 6 0.01
177 28 0.07
178 74 0.18
179 3 0.01
180 161 0.40
181 107 0.26
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (180 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAATCTGCTCCACTGC
AACTTCAAGGAGATAAGACTATATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTG
TTTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTATA
Found at i:91353025 original size:100 final size:100
Alignment explanation
Indices: 91352852--91353151 Score: 564
Period size: 100 Copynumber: 3.0 Consensus size: 100
91352842 GAATCAAATG
*
91352852 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATAAGAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
91352917 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
*
91352952 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGTAAAATGTCATGAGAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
91353017 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
* *
91353052 CTCCTAACTAGATGTGTATGAATGTTATTTGTATGAATGCAAAATGTCATGAAAATGATCCCTTC
1 CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
91353117 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
66 TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
91353152 AGGTTGTATC
Statistics
Matches: 195, Mismatches: 5, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
100 195 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (100 bp):
CTCCTAACTAGATGTGTATGAATGATATTTGTATGAATGCAAAATGTCATGAGAATGATCCCTTC
TTAATGTTTGGGTTGTCATTACTTATTGTTCATCA
Found at i:91353510 original size:65 final size:65
Alignment explanation
Indices: 91353426--91353550 Score: 198
Period size: 65 Copynumber: 1.9 Consensus size: 65
91353416 GGACAAAAAA
* *
91353426 GAAATTGATTGGGATCATAGCTCGAAATGAATA-AATTAATCAAAGATAGCAAATGCAATAAGAA
1 GAAATTGATTGGGAGCATAGCTCAAAATGAATACAA-TAATCAAAGATAGCAAATGCAATAAGAA
91353490 G
65 G
* *
91353491 GAAATTGATTGGGAGCATAGCTCAAAATGAATACAATAATCAAGGATAGCAAATTCAATA
1 GAAATTGATTGGGAGCATAGCTCAAAATGAATACAATAATCAAAGATAGCAAATGCAATA
91353551 TGGGTAAGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
65 53 0.96
66 2 0.04
ACGTcount: A:0.47, C:0.10, G:0.19, T:0.23
Consensus pattern (65 bp):
GAAATTGATTGGGAGCATAGCTCAAAATGAATACAATAATCAAAGATAGCAAATGCAATAAGAAG
Found at i:91368483 original size:25 final size:26
Alignment explanation
Indices: 91368455--91368504 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
91368445 AAAGTAATTG
*
91368455 AAAAAAATAAATAA-AGATAAAAGTA
1 AAAAAAATAAATAATAAATAAAAGTA
*
91368480 AAAATAATAAATAATAAATAAAAGT
1 AAAAAAATAAATAATAAATAAAAGT
91368505 CTTCAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAAAAATAAATAATAAATAAAAGTA
Found at i:91377909 original size:11 final size:10
Alignment explanation
Indices: 91377893--91377968 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
91377883 AAAGAATAAC
91377893 AATAATACAAT
1 AATAATA-AAT
91377904 AATAATAAAGT
1 AATAATAAA-T
*
91377915 AGTAATAAA-
1 AATAATAAAT
91377924 AATAA-AAAT
1 AATAATAAAT
*
91377933 AACAAT-AAT
1 AATAATAAAT
*
91377942 AGTAA-AAAT
1 AATAATAAAT
91377951 -ATAATAAAT
1 AATAATAAAT
*
91377960 AATAGTAAA
1 AATAATAAA
91377969 AGAAAATAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
8 6 0.12
9 21 0.40
10 9 0.17
11 16 0.31
ACGTcount: A:0.67, C:0.03, G:0.05, T:0.25
Consensus pattern (10 bp):
AATAATAAAT
Found at i:91377983 original size:24 final size:23
Alignment explanation
Indices: 91377904--91377983 Score: 76
Period size: 23 Copynumber: 3.5 Consensus size: 23
91377894 ATAATACAAT
* * *
91377904 AATAATAAAGTAGTAATAAAAATA
1 AATAATAAAATAATAGTAAAAA-A
91377928 AA-AATAACAATAATAGT-AAAAA
1 AATAATAA-AATAATAGTAAAAAA
*
91377950 TATAAT-AAATAATAGTAAAAGAA
1 AATAATAAAATAATAGTAAAA-AA
91377973 AATAATAAAAT
1 AATAATAAAAT
91377984 TTAATAATTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
21 9 0.20
22 6 0.13
23 19 0.41
24 12 0.26
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (23 bp):
AATAATAAAATAATAGTAAAAAA
Found at i:91381661 original size:7 final size:8
Alignment explanation
Indices: 91381644--91381668 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91381634 CAATCGAATG
91381644 AAATAAAA
1 AAATAAAA
91381652 AAATAAAA
1 AAATAAAA
91381660 AAATAAAA
1 AAATAAAA
91381668 A
1 A
91381669 TAGTCTGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:91384742 original size:28 final size:27
Alignment explanation
Indices: 91384688--91384742 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
91384678 ATTAATCTCT
** **
91384688 AAAAATCTCTCCAAAAACCCTTTCTTC
1 AAAAATCTCTCCAAAAAAACTAGCTTC
91384715 AAAAATCCTCTCCAAAAAAACTAGCTTC
1 AAAAAT-CTCTCCAAAAAAACTAGCTTC
91384743 TTAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.42, C:0.31, G:0.02, T:0.25
Consensus pattern (27 bp):
AAAAATCTCTCCAAAAAAACTAGCTTC
Found at i:91384907 original size:13 final size:13
Alignment explanation
Indices: 91384889--91385006 Score: 56
Period size: 13 Copynumber: 8.1 Consensus size: 13
91384879 GTAGAGTAGG
91384889 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
*
91384902 TTAGTGGGGTGTTGGAG
1 TTAGT-GGG-G-TGG-T
*
91384919 TTAGTGGGGTGAT
1 TTAGTGGGGTGGT
*
91384932 TTAGTGGGGTAGT
1 TTAGTGGGGTGGT
* *
91384945 TGTGATTTAGTGGTCGGT
1 T-T-A-GT-GGGGT-GGT
*
91384963 TTAGTGGGGTGTTGGAG
1 TTAGT-GGG-G-TGG-T
*
91384980 TTAGTGGGGTGAT
1 TTAGTGGGGTGGT
91384993 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
91385006 T
1 T
91385007 GTGATTTAGT
Statistics
Matches: 78, Mismatches: 15, Indels: 24
0.67 0.13 0.21
Matches are distributed among these distances:
13 30 0.38
14 8 0.10
15 7 0.09
16 14 0.18
17 16 0.21
18 3 0.04
ACGTcount: A:0.12, C:0.01, G:0.48, T:0.39
Consensus pattern (13 bp):
TTAGTGGGGTGGT
Found at i:91384922 original size:30 final size:32
Alignment explanation
Indices: 91384888--91385022 Score: 174
Period size: 30 Copynumber: 4.4 Consensus size: 32
91384878 GGTAGAGTAG
*
91384888 GTTAGTGGGGTGGTTTAGTGGGGT-GTTG-GA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
91384918 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
* *
91384950 TTTAGT--GGTCGGTTTAGTGGGGT-GTTG-GA
1 GTTAGTGGGGT-GATTTAGTGGGGTAGTTGTGA
*
91384979 GTTAGTGGGGTGATTTAGTGGGGTGGTTGTGA
1 GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
*
91385011 TTTAGTGGGGTG
1 GTTAGTGGGGTG
91385023 TTGGAGTTAG
Statistics
Matches: 92, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
29 7 0.08
30 42 0.46
31 23 0.25
32 20 0.22
ACGTcount: A:0.12, C:0.01, G:0.49, T:0.39
Consensus pattern (32 bp):
GTTAGTGGGGTGATTTAGTGGGGTAGTTGTGA
Found at i:91384924 original size:17 final size:17
Alignment explanation
Indices: 91384901--91385037 Score: 111
Period size: 17 Copynumber: 8.6 Consensus size: 17
91384891 AGTGGGGTGG
91384901 TTTAGTGGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91384918 GTTAGT-GGG-G-T-GA
1 TTTAGTGGGGTGTTGGA
91384931 TTTAGTGGGGTAGTTGTGA
1 TTTAGTGGGGT-GTTG-GA
*
91384950 TTTAGT---G-GTCGG-
1 TTTAGTGGGGTGTTGGA
91384962 TTTAGTGGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91384979 GTTAGT-GGG-G-T-GA
1 TTTAGTGGGGTGTTGGA
91384992 TTTAGTGGGGTGGTTGTGA
1 TTTAGTGGGGT-GTTG-GA
91385011 TTTAGTGGGGTGTTGGA
1 TTTAGTGGGGTGTTGGA
*
91385028 GTTAGTGGGG
1 TTTAGTGGGG
91385038 CGGTTTGGGT
Statistics
Matches: 96, Mismatches: 7, Indels: 34
0.70 0.05 0.25
Matches are distributed among these distances:
12 6 0.06
13 15 0.16
14 11 0.11
15 3 0.03
16 13 0.14
17 23 0.24
18 4 0.04
19 21 0.22
ACGTcount: A:0.12, C:0.01, G:0.48, T:0.39
Consensus pattern (17 bp):
TTTAGTGGGGTGTTGGA
Found at i:91384951 original size:19 final size:18
Alignment explanation
Indices: 91384901--91385037 Score: 87
Period size: 19 Copynumber: 8.6 Consensus size: 18
91384891 AGTGGGGTGG
91384901 TTTAGTGGGGTGTTG-GA
1 TTTAGTGGGGTGTTGTGA
*
91384918 GTTAGT--GG-G--GTGA
1 TTTAGTGGGGTGTTGTGA
91384931 TTTAGTGGGGTAGTTGTGA
1 TTTAGTGGGGT-GTTGTGA
*
91384950 TTTAGT---G-GTCG-G-
1 TTTAGTGGGGTGTTGTGA
91384962 TTTAGTGGGGTGTTG-GA
1 TTTAGTGGGGTGTTGTGA
*
91384979 GTTAGT--GG-G--GTGA
1 TTTAGTGGGGTGTTGTGA
91384992 TTTAGTGGGGTGGTTGTGA
1 TTTAGTGGGGT-GTTGTGA
91385011 TTTAGTGGGGTGTTG-GA
1 TTTAGTGGGGTGTTGTGA
*
91385028 GTTAGTGGGG
1 TTTAGTGGGG
91385038 CGGTTTGGGT
Statistics
Matches: 94, Mismatches: 7, Indels: 38
0.68 0.05 0.27
Matches are distributed among these distances:
12 8 0.09
13 15 0.16
14 5 0.05
15 9 0.10
16 5 0.05
17 23 0.24
18 4 0.04
19 25 0.27
ACGTcount: A:0.12, C:0.01, G:0.48, T:0.39
Consensus pattern (18 bp):
TTTAGTGGGGTGTTGTGA
Found at i:91384965 original size:61 final size:61
Alignment explanation
Indices: 91384899--91385018 Score: 231
Period size: 61 Copynumber: 2.0 Consensus size: 61
91384889 TTAGTGGGGT
91384899 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
1 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
*
91384960 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTGGTTGTGATTTAGTGG
1 GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGG
91385019 GGTGTTGGAG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.12, C:0.01, G:0.47, T:0.39
Consensus pattern (61 bp):
GGTTTAGTGGGGTGTTGGAGTTAGTGGGGTGATTTAGTGGGGTAGTTGTGATTTAGTGGTC
Found at i:91385748 original size:87 final size:90
Alignment explanation
Indices: 91385616--91385955 Score: 281
Period size: 87 Copynumber: 3.8 Consensus size: 90
91385606 ATTAGACATT
* * * * * * * *
91385616 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAG
1 AAAAACA-TAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
*
91385681 TTGATTTTT-AAA-AAAAAATTTG-TA
65 TTGATTTTTCAAAGAAAAAA-TTGAAA
* * * * * *
91385705 AAATAGAT-TTTGAAAATACCTCGGTATGTGACCCGGGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACATAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
91385769 TGATTTTTGCAAAGCATAAATTGAAAA
66 TGATTTTT-CAAAGAAAAAATTG-AAA
* *
91385796 AAAAACATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAT-AATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
* *
91385861 TTGATTTTTTTGACAAA-CATAAATTGAAA
65 TTGA--TTTTT--CAAAGAAAAAATTGAAA
* * * * *
91385890 AAAAAGA-AATTGAAAATACCTCAGC--GTG-TCC---TCTGAACTCACCTCTCGCAATATGAGT
1 AAAAACATAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
91385948 TGATTTTT
66 TGATTTTT
91385956 TTGGAAAAAC
Statistics
Matches: 209, Mismatches: 32, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
84 5 0.02
86 28 0.13
87 53 0.25
89 12 0.06
90 7 0.03
91 7 0.03
92 17 0.08
93 53 0.25
94 9 0.04
95 14 0.07
96 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (90 bp):
AAAAACATAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTCAAAGAAAAAATTGAAA
Found at i:91385978 original size:15 final size:14
Alignment explanation
Indices: 91385959--91385990 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
91385949 GATTTTTTTG
91385959 GAAAAACATAATTT
1 GAAAAACATAATTT
91385973 GAAAAACATAATTT
1 GAAAAACATAATTT
91385987 GAAA
1 GAAA
91385991 TTACCTCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (14 bp):
GAAAAACATAATTT
Found at i:91386033 original size:178 final size:177
Alignment explanation
Indices: 91385742--91386137 Score: 432
Period size: 178 Copynumber: 2.2 Consensus size: 177
91385732 GTGACCCGGG
* * *
91385742 GCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAACATC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTG---AAAAAACATC
* * * *
91385805 AATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG-T-TGATTT
63 AATTGAAAATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTAT-ATTT
* * *
91385868 TTTTGACAA-ACATAAATTGAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCCT
127 TTTTGA-AACACAGAAATTG-AAAAAAAGAAATGGAAAACACCTCA--GTGTCCT
* *
91385922 -CTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACATAATTTG-AAAAACAT-AA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAAACATAAATTGAAAAAACATCAA
* * *
91385984 TTTGAAATTACCTCAGCGTATGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGCTATTTTTT
65 -TTGAAAATACCTCAGCGTATGACCT-AAGGCTCAACTCACCACTCGCAATATGAGCTATATTTT
* * *
91386048 TTTGAAACACAGAAATTGAATAACAGAAATGGAAAACACCTCAGTGTCTT
128 TTTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCCT
*
91386098 GAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 ---GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
91386138 TTGAAAGACA
Statistics
Matches: 184, Mismatches: 20, Indels: 24
0.81 0.09 0.11
Matches are distributed among these distances:
176 6 0.03
177 3 0.02
178 77 0.42
179 46 0.25
180 35 0.19
181 5 0.03
182 12 0.07
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30
Consensus pattern (177 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAAAACATCAAT
TGAAAATACCTCAGCGTATGACCTAAGGCTCAACTCACCACTCGCAATATGAGCTATATTTTTTT
GAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGTGTCCT
Found at i:91386047 original size:92 final size:86
Alignment explanation
Indices: 91385616--91386137 Score: 369
Period size: 92 Copynumber: 5.8 Consensus size: 86
91385606 ATTAGACATT
* * * *
91385616 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG--CGT--GTC-AGGCTCAACTCACCTCTCGCAATATGAG
91385681 TTGA--TTTTT-AAAAA-A-AAATTTG
61 TTGATTTTTTTGAAAAACATAAA-TTG
* * ** * * * * *
91385703 TAAAATAGATTTTGAAAATACCTCGGTATGTGACCCGGGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG--CGTG--TC-AGGCTCAACTCACCTCTCGCAATATGAG
* *
91385768 TTGA--TTTTTGCAAAGCATAAATTG
61 TTGATTTTTTTGAAAAACATAAATTG
** *
91385792 AAAAAAAAACATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 ----AAAAACAGAAATTGAAAATACCTCAGCGTGT---C--AGGCTCAACTCACCTCTCGCAATA
*
91385857 TGAGTTGATTTTTTTGACAAACATAAATTG
57 TGAGTTGATTTTTTTGAAAAACATAAATTG
* ** *
91385887 AAAAAAAAGAAATTGAAAATACCTCAGCGTGTC-CTCTGAACTCACCTCTCGCAATATGAGTTGA
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTCAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
91385951 TTTTTTTGGAAAAACATAATTTG
65 TTTTTTT-GAAAAACATAAATTG
* * * *
91385974 AAAAACATAATTTGAAATTACCTCAGCGTATGAGTCAAGGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCG--T--GTC-AGGCTCAACTCACCTCTCGCAATATGAG
* * *
91386039 CTAT-TTTTTTTTGAAACACAGAAATTG
61 -T-TGATTTTTTTGAAAAACATAAATTG
* * * * * * *
91386066 AATAACAGAAATGGAAAACACCTCAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAAACAGAAATTGAAAATACCTCAGCGT-GTCAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91386131 TTTTTTT
65 TTTTTTT
91386138 TTGAAAGACA
Statistics
Matches: 348, Mismatches: 62, Indels: 50
0.76 0.13 0.11
Matches are distributed among these distances:
85 1 0.00
86 60 0.17
87 79 0.23
88 30 0.09
89 6 0.02
90 7 0.02
91 3 0.01
92 85 0.24
93 59 0.17
94 1 0.00
95 17 0.05
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (86 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTTGAAAAACATAAATTG
Found at i:91386340 original size:71 final size:69
Alignment explanation
Indices: 91386074--91386359 Score: 330
Period size: 69 Copynumber: 4.1 Consensus size: 69
91386064 TGAATAACAG
* * *
91386074 AAATGGAAAACACCTC-A-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
91386137 TTTGAAAGACA
63 TTTG--AG--A
*
91386148 GAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 -AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91386212 TGACA
65 TGAGA
* * *
91386217 AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AA-ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91386282 TGATGA
65 TGA-GA
* ** *
91386288 TAAATTGAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTT
1 -AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91386352 TGA-A
65 TGAGA
91386356 AAAT
1 AAAT
91386360 AAATTAAAAC
Statistics
Matches: 188, Mismatches: 17, Indels: 20
0.84 0.08 0.09
Matches are distributed among these distances:
67 4 0.02
68 3 0.02
69 54 0.29
70 14 0.07
71 52 0.28
72 2 0.01
73 6 0.03
75 13 0.07
76 1 0.01
77 39 0.21
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (69 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAGA
Found at i:91386349 original size:140 final size:143
Alignment explanation
Indices: 91386091--91386354 Score: 399
Period size: 140 Copynumber: 1.8 Consensus size: 143
91386081 AAACACCTCA
* * *
91386091 GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGACAGAAATTGG
1 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGA-AGAAATTGA
**
91386156 AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA
63 AAATACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA
91386221 TTGAAATTACCTCAGC
128 TTGAAATTACCTCAGC
* *
91386237 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-ATG-ATAAATTGAAAA
1 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAAGAAATTGAAAA
* *
91386299 TACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGA
66 TACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
91386355 AAAATAAATT
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
140 62 0.57
142 2 0.02
143 7 0.06
146 38 0.35
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (143 bp):
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAAGAAATTGAAAA
TACCTCAACGTAACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATTG
AAATTACCTCAGC
Found at i:91386362 original size:71 final size:71
Alignment explanation
Indices: 91386074--91386368 Score: 341
Period size: 71 Copynumber: 4.1 Consensus size: 71
91386064 TGAATAACAG
* * *
91386074 AAATGGAAAACACCTC-A-GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT
*
91386137 TTTGAAAGACAG
63 TTTG-AA-A-AT
*
91386149 AAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
91386213 GACAA-
66 GAAAAT
* * * *
91386218 ACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
**
91386283 GATGAT
66 GAAAAT
* ** *
91386289 AAATTGAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91386353 GAAAAAT
66 G-AAAAT
91386360 AAATT-AAAA
1 AAATTGAAAA
91386369 CACAAAAATT
Statistics
Matches: 193, Mismatches: 22, Indels: 15
0.84 0.10 0.07
Matches are distributed among these distances:
69 54 0.28
70 19 0.10
71 60 0.31
72 1 0.01
73 6 0.03
75 13 0.07
76 1 0.01
77 39 0.20
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAT
Found at i:91386531 original size:73 final size:73
Alignment explanation
Indices: 91386063--91386528 Score: 238
Period size: 71 Copynumber: 6.3 Consensus size: 73
91386053 AACACAGAAA
* * * * ** * *
91386063 TTGAATAACAGAAATGGAAAACACCTCA--GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
91386126 GTTGATTTTTTT
66 GTTGA----TTT
* * * * ** *
91386138 TTGAAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
91386203 GTTGATTT
66 GTTGATTT
* * * * *
91386211 TTGACAAAC----ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
91386272 GTTGATTTT
66 GTTGA-TTT
** * ** ** ** **
91386281 TTG---ATGATAAATTGAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
91386343 GTTGATTT
66 GTTGATTT
* * *** * * * * * *
91386351 TTG-AAAA-ATAAATT-AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATAC-CTCA--G-C-GTGCC-C--CGAGGCTC-A-ACT-----CA
*
91386413 CCTCTCGCAATATGAGTTGATTT
51 CCTCTCACAATATGAGTTGATTT
* *
91386436 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
91386501 GTTGA-TT
66 GTTGATTT
**
91386508 TTGACGAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
91386529 ATAGAAATTG
Statistics
Matches: 311, Mismatches: 53, Indels: 57
0.74 0.13 0.14
Matches are distributed among these distances:
67 1 0.00
69 53 0.17
70 18 0.06
71 58 0.19
72 21 0.07
73 31 0.10
75 26 0.08
77 39 0.13
78 6 0.02
79 2 0.01
80 7 0.02
82 1 0.00
83 2 0.01
84 1 0.00
85 28 0.09
86 4 0.01
87 7 0.02
88 6 0.02
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTT
Found at i:91386583 original size:86 final size:84
Alignment explanation
Indices: 91386436--91386681 Score: 316
Period size: 86 Copynumber: 2.9 Consensus size: 84
91386426 GAGTTGATTT
*
91386436 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
*
91386501 GTTGATTTTGACGAACAGAAA
66 GTTGATTTTGA--AAAAGAAA
*
91386522 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG-
1 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91386586 GTTGGTTTTTGAAAAATAAT
66 GTT-GATTTTGAAAAAGAAA
* * ** * *
91386606 TTAAAAAACAGATTTTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAAATAGAAATTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATA
91386670 TGAGTTGATTTT
63 TGAGTTGATTTT
91386682 TTTGAAACAT
Statistics
Matches: 141, Mismatches: 14, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
83 1 0.01
84 32 0.23
85 3 0.02
86 102 0.72
87 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (84 bp):
TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGAAAAAGAAA
Found at i:91386818 original size:162 final size:162
Alignment explanation
Indices: 91386522--91387071 Score: 623
Period size: 162 Copynumber: 3.4 Consensus size: 162
91386512 CGAACAGAAA
* * *
91386522 TTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG-
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * ** * *
91386586 GTTG-GTTTTTGAAAAATAATTTAAAAAACAGATTTTGAAAATACCTC-GACATGTAACCCGAGG
66 GTTGATTTTTTGAAAAATAA-TTGAAAAACAGAAATTGAAAATACCTCAG-CACGTGACCCGAGG
*
91386649 CTCAACTCACCTCTTGCAATATGAGTTGATTTTT
129 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * * *
91386683 TTG-AA-ACATAGATCGAAAATACCTTAGCATGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91386746 GTTGATTTTTTGAAAACATGAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCGAGG
66 GTTGATTTTTTGAAAA-AT-AATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGACCCGAGG
* *
91386811 CTCAACTCACCTCTCACAATATGACTTGATTTTTT
129 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
91386846 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *** ** * * **
91386911 GTTGATTTTTTTAATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGC
66 GTTGATTTTTTGAA-AAATAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGACCCGAGGC
91386974 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
130 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
*** * * * *
91387007 AAAAAAAACAGAAAT-TAAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAGACAGAAATCGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
91387070 AG
65 AG
91387072 CAGAAATTGA
Statistics
Matches: 330, Mismatches: 49, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
159 49 0.15
160 42 0.13
161 37 0.11
162 99 0.30
163 11 0.03
164 29 0.09
165 63 0.19
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (162 bp):
TTGAAAGACAGAAATCGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTGAAAAATAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGACCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:91386907 original size:76 final size:76
Alignment explanation
Indices: 91386768--91387071 Score: 337
Period size: 86 Copynumber: 3.9 Consensus size: 76
91386758 AAAACATGAA
* *
91386768 TTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCACAATA
*
91386832 TGACTTGATTTTTT
63 TGAGTTGATTTTTT
* *
91386846 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
91386911 GTTGATTTTTTTAATTTTTTT
66 GTTG---------A-TTTTTT
* *
91386932 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
91386997 GTTGA-TTTTT
66 GTTGATTTTTT
*** * * *
91387007 AAAAAAAACAGAAATT-AAAATTACCTCAGC-TGTCCTGAGGCTCAACTCACCTCTCACAATGTG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATG
91387070 AG
65 AG
91387072 CAGAAATTGA
Statistics
Matches: 201, Mismatches: 13, Indels: 28
0.83 0.05 0.12
Matches are distributed among these distances:
74 36 0.18
75 26 0.13
76 35 0.17
77 1 0.00
78 27 0.13
85 1 0.00
86 75 0.37
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTTT
Found at i:91387109 original size:58 final size:57
Alignment explanation
Indices: 91387015--91387124 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
91387005 TTAAAAAAAA
*
91387015 CAGAAATTAAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
1 CAGAAATTAAAATTACCTCAACTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
* *
91387072 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
1 CAGAAATT-AAAATTACCTCAAC-TGTCCTGAGGCTCAACTCACCTCTCACAAT
91387125 ATAAGTTGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
57 16 0.33
58 32 0.67
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (57 bp):
CAGAAATTAAAATTACCTCAACTGTCCTGAGGCTCAACTCACCTCTCACAATGTGAG
Found at i:91387192 original size:72 final size:72
Alignment explanation
Indices: 91387075--91387210 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
91387065 ATGTGAGCAG
* * *
91387075 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
1 AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
91387140 TGATGAT
66 TGATGAT
* * *
91387147 AAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTT
1 AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
91387211 GAAAAATAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (72 bp):
AAATTGAAAATACCTCAACATGACTTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
TGATGAT
Found at i:91387218 original size:132 final size:130
Alignment explanation
Indices: 91386940--91387201 Score: 348
Period size: 132 Copynumber: 2.0 Consensus size: 130
91386930 TTTTGAAAGA
*
91386940 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
* * * *
91387005 TTAAAAAAAACAGAAATTAAAATTACCTCAGCTGTCCTGAGGCTCAACTCACCTCTCACAATGTG
66 TT--AAAAAACAGAAATTAAAATTACCTCAGATGACCTAAGGCTCAACTCACCTCTCACAATATG
91387070 AG
129 AG
91387072 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
1 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
*** ** * * * *
91387137 TT-TTGATGATAAATTGAAAA-TACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATG
66 TTAAAAAACAGAAATT-AAAATTACCTC-AGATGACCTAAGGCTCAACTCACCTCTCACAATATG
91387200 AG
129 AG
91387202 TTTATTTTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
129 13 0.11
130 35 0.31
132 66 0.58
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (130 bp):
CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
TTAAAAAACAGAAATTAAAATTACCTCAGATGACCTAAGGCTCAACTCACCTCTCACAATATGAG
Found at i:91387319 original size:73 final size:73
Alignment explanation
Indices: 91387223--91388452 Score: 628
Period size: 73 Copynumber: 16.1 Consensus size: 73
91387213 AAAATAAATT
* * * ***
91387223 AAAACACAAAAATTGACAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAA-ACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91387288 TGATTTTTG
65 TGATTTTTG
* *
91387297 AAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
91387362 GATTTTTG
66 GATTTTTG
* * *
91387370 AAAAACATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGAAATTG---A-AAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
91387435 AGTTGATTTTTT
62 AGTTGATTTTTG
*** *** * * *
91387447 ATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGCGTCTTGAGGTTCAACTCACCTCTC
1 AAAAACAGAAATT---G---A-AAA-T-ACCTCAGC---GTGTCTTGAGGCTCAACTCACCTCTC
*
91387512 GCAATATGAGTTAATTTTTTTTTG
54 GCAATATGAGTTGA----TTTTTG
* *
91387536 AAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAG-CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91387600 TGATTTTTG
65 TGATTTTTG
* * *
91387609 AAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGT
1 AAAAACAGAA-ATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91387673 TGACTTTTTG
65 TGA-TTTTTG
* **** *
91387683 AAAAACAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
91387748 TTGATTTTT-
64 TTGATTTTTG
*** ** * *** * *
91387757 TTGATGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
91387822 TA-TTTTG
66 GATTTTTG
* * *** * ** * * * * * *
91387829 -AAAA-ATAAATT-AAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCAC-C
1 AAAAACAGAAATTGAAAATAC-CTCA--G-C-GTGTCT-TGAG-G-CTC-A-ACTCACCTCTCGC
* * * *
91387890 --TCTCGCAATATGAGTTGATTT
56 AATAT-G-AGT-TGA-TT-TTTG
*** * ** * * * ** * *
91387911 TTGAA-A-AACA--GAAATTGAAAAT-ACCTTAG-CGTG-TCCTGAGGCTCAACTCACCTCTCGC
1 AAAAACAGAA-ATTGAAAAT--ACCTCAGCGT-GTCTTGAGGCTCA-ACT-----CACCTCTCGC
91387969 AATATGAGTTGATTTTTG
56 AATATGAGTTGATTTTTG
* * * *
91387987 AAAAACATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAGTATG
1 AAAAACAGAAATTG---A-AAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
*
91388052 AGTTGATTTTTTT
62 AGTTGA-TTTTTG
*** *** * * * *
91388065 ATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGCGTCATGAGGTTCAACTCACCTCTC
1 AAAAACAGAAATT---G---A-AAA-T-ACCTCAGC---GTGTCTTGAGGCTCAACTCACCTCTC
*
91388130 GCAATATGAGTTAATTTTTTTTG
54 GCAATATGAGTTGA---TTTTTG
* *
91388153 AAATACAGAAATTGGAAATACCTC-GACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAATACCTCAG-CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91388217 TGATTTTTG
65 TGATTTTTG
* * *
91388226 AAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGT
1 AAAAACAGAA-ATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
91388290 TGACTTTTTTG
65 TGA--TTTTTG
* ****
91388301 AAAAACAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
91388366 TTGATTTTT-
64 TTGATTTTTG
*** ** * ** *
91388375 TTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
91388440 GATTTTTG
66 GATTTTTG
91388448 AAAAA
1 AAAAA
91388453 TAAATTAAAA
Statistics
Matches: 896, Mismatches: 175, Indels: 171
0.72 0.14 0.14
Matches are distributed among these distances:
69 6 0.01
70 8 0.01
71 5 0.01
72 79 0.09
73 208 0.23
74 79 0.09
75 41 0.05
76 80 0.09
77 163 0.18
78 31 0.03
79 18 0.02
80 14 0.02
81 20 0.02
82 25 0.03
83 15 0.02
84 1 0.00
85 37 0.04
86 35 0.04
88 16 0.02
89 15 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (73 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTG
Found at i:91387470 original size:14 final size:13
Alignment explanation
Indices: 91387451--91387480 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
91387441 TTTTTTATGC
91387451 ACAGAAATTGAAGA
1 ACAGAAATTGAA-A
91387465 ACAGAAATTGAAA
1 ACAGAAATTGAAA
91387478 ACA
1 ACA
91387481 CCTTAGCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.10, G:0.17, T:0.13
Consensus pattern (13 bp):
ACAGAAATTGAAA
Found at i:91387642 original size:312 final size:300
Alignment explanation
Indices: 91387072--91389256 Score: 1945
Period size: 312 Copynumber: 7.0 Consensus size: 300
91387062 ACAATGTGAG
* *
91387072 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTT
1 CAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
91387137 TTTTG--AT--G---ATAAATTGAAAATACCTCAATA-TGACTTAAGGCTCAACTCACCTCTCGC
66 TTTTGAAATAAGAACAGAAATTGAAAATACCT--ATAGCGACTTGAGGCTCAACTCACCTCTCGC
* * * * * *
91387194 AATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATT-GACAATACCTCAGCGTGCCCC
129 AATATGAGTTGATTTTT------T--TTTGAAATACAAAAATTGGA-AATACCTCAGCGTGACCT
* *
91387258 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTTAG
185 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGAAAATACCTCAG
91387323 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
249 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*
91387375 CATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 CAGAAATTG---A-AAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
91387440 ATTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCT-TAGCGTCTTGAGGTTCAACT
62 ATTTTTT-T-----GAAA-T-AAGAACAGAAATTGAAAATACCTATAGCGACTTGAGGCTCAACT
* * *
91387504 CACCTCTCGCAATATGAGTTAATTTTTTTTTGAAATACAGAAATTGGAAATACCTC-GACGTGTC
119 CACCTCTCGCAATATGAGTTGATTTTTTTTTGAAATACAAAAATTGGAAATACCTCAG-CGTGAC
* *
91387568 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAACATTGAAATTACCTC
183 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAA-ATTGAAAATACCTC
*
91387633 AGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGTTGACTTTTTGAAAAA
247 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAA
*** *
91387688 CAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATAAGTTGAT
1 CAGAAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
91387753 TTTTTTG--AT--G---ATAAATTGAAAATACCTCAATA-TGACTTAAGGCTCAACTCACCTCTC
64 TTTTTTGAAATAAGAACAGAAATTGAAAATACCT--ATAGCGACTTGAGGCTCAACTCACCTCTC
* ** * * *
91387810 GCAATATGAGTTTATTTTGAAAAATAAATTAAAACACAAAAATT-GACAATACCTCAGCGTGCCC
127 GCAATATGAGTTGATTTT------T-TTTTGAAATACAAAAATTGGA-AATACCTCAGCGTGACC
* *
91387874 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTTA
184 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGAAAATACCTCA
91387939 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
248 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* *
91387992 CATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 CAGAAATTG---A-AAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
91388057 ATTTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCT-TAGCGTCATGAGGTTCAAC
62 A-TTTTTT-T-----GAAA-T-AAGAACAGAAATTGAAAATACCTATAGCGACTTGAGGCTCAAC
* * *
91388121 TCACCTCTCGCAATATGAGTT-AATTTTTTTTGAAATACAGAAATTGGAAATACCTC-GACGTGT
118 TCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAATACAAAAATTGGAAATACCTCAG-CGTGA
* *
91388184 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAACATTGAAATTACCT
182 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAA-ATTGAAAATACCT
*
91388249 CAGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGTTGACTTTTTTGAAAAA
246 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAA
***
91388306 CAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 CAGAAATTGAAAATACCTCAACATGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
91388371 TTTTTTG--AT--G---ATAAATTGAAAATACCTCA-ATGTGACTTGAGGCTCAACTCACCTCTC
64 TTTTTTGAAATAAGAACAGAAATTGAAAATACCT-ATA-GCGACTTGAGGCTCAACTCACCTCTC
* * * *
91388428 GCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATT-GACAATACCTCAGCGTGCC
127 GCAATATGAGTTGATTTTT------T--TTTGAAATACAAAAATTGGA-AATACCTCAGCGTGAC
91388492 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTC
183 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-AAATTGAAAATACCTC
* * * * *
91388557 A--GAGTCCCGAGGCTTAACTCACCTCTTGCAATATGAGTCGATTTTGACGAACAGAAATTGAAA
247 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT------------TTGAAA
91388620 AA
299 AA
* * * * *
91388622 CAGAAATTGAAAATACCTTAGCGTATCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG--GT
1 CAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
** * **
91388685 TTTTGAAAACTAATTTGAAAAACAGATTTTGAAAATACCTCGATATGTGACCCGAGGCTCAACTC
66 TTTTG-AAA-TAA---G---AACAGAAATTGAAAATACCT--ATA-GCGACTTGAGGCTCAACTC
* * * * *
91388750 ACCTCTCGCAATATGAGTTGA-TTTTTTTT--AA-ACATAGATCGAAAATACCTCAGCATGACCT
120 ACCTCTCGCAATATGAGTTGATTTTTTTTTGAAATACAAAAATTGGAAATACCTCAGCGTGACCT
*
91388811 GATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATGAATTGAGAAACAGAAAT
185 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT-------TG-A---A-AAACA-AAAT
* *
91388876 TTAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
235 TGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG
*
91388940 AAAGA
296 AAAAA
* *
91388945 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TT
1 CAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
91389009 TTTT-AAA-AAAAACAGAAATT-AAAATTACCT-CAGCGTGTCTTGAGGCTCAACTCACCTCTCG
66 TTTTGAAATAAGAACAGAAATTGAAAA-TACCTATAGC--GACTTGAGGCTCAACTCACCTCTCG
* ** *
91389070 CAATATGAGTTGATTTTTTTTATG--AT----AAATTGAAAATACCTCAATGTGACTTGAGGCTC
128 CAATATGAGTTGATTTTTTTT-TGAAATACAAAAATTGGAAATACCTCAGCGTGACCTGAGGCTC
* * *
91389129 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATAAATTAAAACACAAAAATTGACAATACT
192 AACTCACCTCTCGCAATATGAGTTGA-TTT------T---TGAAAA-AC-AAAATTGAAAATACC
* * * *
91389194 TCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAA
245 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
91389250 CAGAAAT
1 CAGAAAT
91389257 AAAAATATCA
Statistics
Matches: 1582, Mismatches: 152, Indels: 294
0.78 0.07 0.14
Matches are distributed among these distances:
296 30 0.02
297 1 0.00
298 72 0.05
299 9 0.01
302 2 0.00
303 10 0.01
304 26 0.02
305 182 0.12
306 72 0.05
307 152 0.10
308 39 0.02
309 17 0.01
310 24 0.02
311 105 0.07
312 327 0.21
313 37 0.02
314 67 0.04
315 3 0.00
316 34 0.02
317 54 0.03
318 3 0.00
319 14 0.01
320 75 0.05
321 1 0.00
322 34 0.02
323 64 0.04
324 5 0.00
326 2 0.00
327 15 0.01
328 5 0.00
329 40 0.03
330 1 0.00
331 22 0.01
335 36 0.02
336 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (300 bp):
CAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTGAAATAAGAACAGAAATTGAAAATACCTATAGCGACTTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTTGAAATACAAAAATTGGAAATACCTCAGCGTGACCTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAATTGAAAATACCTCAGCGTGTCCTGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
Found at i:91387944 original size:617 final size:613
Alignment explanation
Indices: 91386063--91389012 Score: 3223
Period size: 617 Copynumber: 4.7 Consensus size: 613
91386053 AACACAGAAA
* * * * * *
91386063 TTGAATAACAGAAATGGAAAACACCTCA--GTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
91386126 GTTGATTTTTTTTTGAAAGACAGAAATTG----GAAATACCTCAACGTGTCTTGAGGCTCAACTC
66 GTTGA----TTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGTCTTGAGGCTCAACTC
*
91386187 ACCTCTCGCAATATGAGTTGA--TTTT-TGACA-AACATT--------GAAATT------ACCTC
127 ACCTCTCGCAATATGAGTTGATTTTTTATGACAGAA-ATTGAAGAACAGAAATTGAAAACACCTT
* * *
91386234 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTG--AT-GATAAATT
191 AGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAATACAGAAATT
* ** *
91386294 GAAAATACCTCAATGTAACTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAA
254 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-----
* * *
91386359 TAAATTAAAACACAAAAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAA
314 ------AAAA-ACAAACATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
* * *
91386423 TATGAGTTGATTTTTGAAAAATAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACC
371 TATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCACGAGGCTCAACTCACC
* * ** ***
91386488 TCTCACAATATGAGTTGATTTTGACGAACAGAAATTGAAAAATAGAAATTGAAAATACCTCAGCG
436 TCTCGCAATATGAGTTGATTTT-----------TTTG-ATGAT--AAATTGAAAATACCTCAATA
* * * ** * * *
91386553 TGTCCTGAGGCTCAACTCACCTCTCGCAATATG-GTTGGTTTTTGAAAAATAATTTAAAAAACAG
487 TGACTTAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAATAAATTAAAACACAA
** * ** *
91386617 ATTTTGAAAATACCTC-GACATGTAACCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
552 AAATTGACAATACCTCAG-C--GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*** * * * * * *
91386681 TTTTGAAACATAGATCGAAAATACCTTAGCATGACCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
91386746 GTTGATTTTTTG-AAAACATGAATTGAAAAACAGAAATTGAAAATACCTCAGCACGTGAGC-CGA
66 GTTGA-TTTTTGAAAAACATAAATTG---AAC----A--G-AAATACCTCA--ACGTG-TCTTGA
* * *
91386809 GGCTCAACTCACCTCTCACAATATGACTTGATTTTTT-T---TG--A---AAG-ACAGAAATTGA
117 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTATGACAGAAATTGAAGAACAGAAATTGA
* * * *
91386864 AAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAATTTT
182 AAACACCT-TA-GCGTCCTGAGGCTCAACTCACCTCTCGCAATATGA---G------TTAA-TTT
*
91386929 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
235 TTTTTGAAATACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
* *
91386994 TGAGTTGATTTTTAAAAAAAACAGAA-ATTAAAATTACCTCAGC-TGTCCTGAGGCTCAACTCAC
300 TGAGTTGATTTTT--GAAAAACA-AACATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
* **
91387057 CTCTCAC-A-AT--G-TGA-----G-----CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
362 CTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCACGAGGCT
*
91387107 CAACTCACCTCTCGCAATATAAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATATGACT
427 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATATGACT
91387172 TAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATT
492 TAAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATT
*
91387237 GACAATACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
557 GACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
91387294 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91387359 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCT
66 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
91387424 CTCGCAATATGAGTTGATTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGCG
131 CTCGCAATATGAGTTGATTTTTTATG-ACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGCG
* * *
91387489 TCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTTGAAATACAGAAATTGGAAA
195 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-TTTTTTTTGAAATACAGAAATTGAAAA
*
91387554 TACCTCGACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAC
259 TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAC
*
91387619 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGTTGACTTTTTGA
324 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGA
** *
91387684 AAAACAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATAAGT
388 AAAACAGAAATTGAAAATACCTCAAC--GTGTCACGAGGCTCAACTCACCTCTCGCAATATGAGT
91387749 TGATTTTTTTGATGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAA
451 TGATTTTTTTGATGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAA
91387814 TATGAGTTTA-TTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAG
516 TATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAG
91387878 GCTCAACTCACCTCTCGCAATATGAGTTGATTT
581 GCTCAACTCACCTCTCGCAATATGAGTTGATTT
91387911 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
91387976 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACATGTCTTGAGGCTCAACTCACCT
66 GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
*
91388041 CTCGCAGTATGAGTTGATTTTTTTATGCACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGC
131 CTCGCAATATGAGTTGA-TTTTTTATG-ACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGC
* * *
91388106 GTCATGAGGTTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAATACAGAAATTGGAAA
194 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAATACAGAAATTGAAAA
*
91388171 TACCTCGACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAC
259 TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAC
*
91388236 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTGACCTCTCGCAATATGAGTTGACTTTTTTG
324 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
**
91388301 AAAAACAGAAATTGAAAATACCTCAACATGTGAAACGAGGCTCAACTCACCTCTCGCAATATGAG
387 AAAAACAGAAATTGAAAATACCTCAAC--GTGTCACGAGGCTCAACTCACCTCTCGCAATATGAG
* *
91388366 TTGATTTTTTTGATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCA
450 TTGATTTTTTTGATGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCA
* *
91388431 ATATGAGTTGATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCTGA
515 ATATGAGTTTATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGA
91388496 GGCTCAACTCACCTCTCGCAATATGAGTTGATTT
580 GGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * * *
91388530 TTGAAAAACAGAAATTGAAAATACCTCA--GAGTCCCGAGGCTTAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* ** * * * *
91388593 GTCGA-TTTTGACGAACAGAAATTGAAAAACAGAAATTGAAAATACCTTAGCGTATCTTGAGGCT
66 GTTGATTTTTGAAAAACATAAATTG---AAC----A--G-AAATACCTCAACGTGTCTTGAGGCT
* * ** * * * ** *
91388657 CAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAC-TAATTTGAAAAACAGATTTTGAAAAT
121 CAACTCACCTCTCGCAATATGAGTTGATTTTTTATGACAGAAATTGAAGAACAGAAATTGAAAAC
* * * *
91388721 ACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT--AA-AC
186 ACCT---TA-GCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAATAC
* * * * * * * *
91388783 ATAGATCGAAAATACCTCAGCATGACCTGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
247 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * * *
91388848 TTGAAAACATGAATTGAGAAACAGAAATTTAAAATACCTCAGCACGTGAGCC-GAGGCTCAACTC
311 TTG---A-A--AA---ACAAAC----ATTGAAATTACCTCAG--CGTG-TCCTGAGGCTCAACTC
* **
91388912 ACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
360 ACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCACGAG
*
91388977 GTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
424 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
91389013 AAAAAAAACA
Statistics
Matches: 2052, Mismatches: 156, Indels: 229
0.84 0.06 0.09
Matches are distributed among these distances:
598 2 0.00
599 23 0.01
600 26 0.01
601 125 0.06
602 3 0.00
603 10 0.00
604 2 0.00
605 3 0.00
606 2 0.00
607 1 0.00
608 1 0.00
610 36 0.02
611 5 0.00
612 24 0.01
613 112 0.05
614 47 0.02
615 40 0.02
616 52 0.03
617 426 0.21
618 354 0.17
619 116 0.06
620 35 0.02
623 25 0.01
624 55 0.03
625 15 0.01
626 48 0.02
627 42 0.02
628 61 0.03
629 3 0.00
630 10 0.00
631 2 0.00
632 36 0.02
633 8 0.00
634 10 0.00
637 41 0.02
638 17 0.01
639 70 0.03
640 37 0.02
641 5 0.00
642 2 0.00
643 26 0.01
644 16 0.01
645 6 0.00
648 3 0.00
651 7 0.00
653 1 0.00
654 61 0.03
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (613 bp):
TTGAAAAACAGAAATTGAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACATAAATTGAACAGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTATGACAGAAATTGAAGAACAGAAATTGAAAACACCTTAGCGT
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTTGAAATACAGAAATTGAAAATA
CCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAACAT
TGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
ACAGAAATTGAAAATACCTCAACGTGTCACGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGATGATAAATTGAAAATACCTCAATATGACTTAAGGCTCAACTCACCTCTCGCAATATGA
GTTTATTTTTGAAAAATAAATTAAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTT
Found at i:91388088 original size:14 final size:13
Alignment explanation
Indices: 91388069--91388098 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
91388059 TTTTTTATGC
91388069 ACAGAAATTGAAGA
1 ACAGAAATTGAA-A
91388083 ACAGAAATTGAAA
1 ACAGAAATTGAAA
91388096 ACA
1 ACA
91388099 CCTTAGCGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.60, C:0.10, G:0.17, T:0.13
Consensus pattern (13 bp):
ACAGAAATTGAAA
Found at i:91388582 original size:71 final size:72
Alignment explanation
Indices: 91388459--91388620 Score: 220
Period size: 71 Copynumber: 2.2 Consensus size: 72
91388449 AAAATAAATT
* * *
91388459 AAAACACAAAAATTGACAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAA-ACAGAAATTGAAAATACCTCAGAGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
91388524 TGATTTTTG
65 CGA-TTTTG
* *
91388533 AAAAACAGAAATTGAAAATACCTCAGAGT-CCC-GAGGCTTAACTCACCTCTTGCAATATGAGTC
1 AAAAACAGAAATTGAAAATACCTCAGAGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
91388596 GATTTTG
66 GATTTTG
**
91388603 ACGAACAGAAATTGAAAA
1 AAAAACAGAAATTGAAAA
91388621 ACAGAAATTG
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
70 21 0.26
71 30 0.38
72 3 0.04
73 22 0.28
74 4 0.05
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.24
Consensus pattern (72 bp):
AAAAACAGAAATTGAAAATACCTCAGAGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTG
Found at i:91388623 original size:14 final size:14
Alignment explanation
Indices: 91388606--91388634 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
91388596 GATTTTGACG
91388606 AACAGAAATTGAAA
1 AACAGAAATTGAAA
91388620 AACAGAAATTGAAA
1 AACAGAAATTGAAA
91388634 A
1 A
91388635 TACCTTAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:91388755 original size:87 final size:87
Alignment explanation
Indices: 91388529--91388775 Score: 283
Period size: 87 Copynumber: 2.9 Consensus size: 87
91388519 TGAGTTGATT
* * *
91388529 TTTGAAAAACAGAAATTGAAAATACCTCAGAGT--CCCGAGGCTTAACTCACCTCTTGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCATAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
* * *
91388592 AG-TCGATTTTGACGAACAGAA
66 AGTTGGTTTTTGACAAACAGAA
* * **
91388613 ATTGAAAAACAGAAATTGAAAATACCT--TAGCGTATCTTGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCATAGTG-A-CCCGAGGCTCAACTCACCTCTCGCAATA
*
91388676 TGAGTTGGTTTTTGA-AAAC-TAA
64 TGAGTTGGTTTTTGACAAACAGAA
**
91388698 TTTGAAAAACAGATTTTGAAAATACCTCGATATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTC-ATA-GTGACCCGAGGCTCAACTCACCTCTCGCAATA
*
91388763 TGAGTTGATTTTT
64 TGAGTTGGTTTTT
91388776 TTTAAACATA
Statistics
Matches: 136, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
82 2 0.01
84 26 0.19
85 26 0.19
86 31 0.23
87 46 0.34
88 3 0.02
89 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (87 bp):
TTTGAAAAACAGAAATTGAAAATACCTCATAGTGACCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGGTTTTTGACAAACAGAA
Found at i:91389026 original size:76 final size:76
Alignment explanation
Indices: 91388866--91389249 Score: 379
Period size: 76 Copynumber: 5.0 Consensus size: 76
91388856 ATGAATTGAG
* * *
91388866 AAACAGAAATTTAAAATACCTCAGCACGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
91388930 TGATTTTTT--GAA
63 TGATTTTTTAAAAA
* *
91388942 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91389007 TTTTTTAAAAA
66 TTTTTTAAAAA
*
91389018 AAACAGAAATT-AAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
91389082 ATTTTTT----T
65 ATTTTTTAAAAA
* ** * * *
91389090 TATGATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
91389155 TTTTGAAAAATAAATTAA
66 TTTT-----TTAAA--AA
* * * * * * ** *
91389173 AACACAAAAATTGACAATACTTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTT
1 AA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
91389238 ATTTTTGAAAAA
65 ATTTTTTAAAAA
91389250 CAGAAATAAA
Statistics
Matches: 257, Mismatches: 34, Indels: 33
0.79 0.10 0.10
Matches are distributed among these distances:
72 57 0.22
73 5 0.02
74 43 0.17
75 4 0.02
76 86 0.33
77 3 0.01
79 3 0.01
83 1 0.00
84 55 0.21
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (76 bp):
AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTAAAAA
Found at i:91389138 original size:148 final size:149
Alignment explanation
Indices: 91388866--91389256 Score: 457
Period size: 148 Copynumber: 2.5 Consensus size: 149
91388856 ATGAATTGAG
*
91388866 AAACAGAAATTTAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAA-TTAAAATACCTCAG--CGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
91388931 GATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCA
62 GATTTTTTGAAAGA-AGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCA
*
91388996 ATATGAGTTGATTTT-TTAAA-AA
126 ATATGAGTTGATTTTAATAAATAA
**
91389018 AAACAGAAATTAAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACAGAAATTAAAA-TACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** * * *
91389083 TTTTTTTTATG-ATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTCTCGCAATA
64 TTTTTTGAAAGAAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATA
91389147 TGAGTTGATTTTGAAAAATAAATTAA
129 TGAGTTGATTTT----AATAAA-TAA
* * * * *
91389173 AACACAAAAATTGACAATACTTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTT
1 AA-ACAGAAATT-AAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
91389238 A-TTTTTGAAAAACAGAAAT
63 ATTTTTTGAAAGA-AGAAAT
91389257 AAAAATATCA
Statistics
Matches: 202, Mismatches: 25, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
148 61 0.30
150 45 0.22
151 6 0.03
152 17 0.08
153 4 0.02
155 10 0.05
156 51 0.25
157 8 0.04
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (149 bp):
AAACAGAAATTAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAAGAAGAAATTGAAAATACCTCAACGTGACTTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTAATAAATAA
Found at i:91394250 original size:16 final size:16
Alignment explanation
Indices: 91394226--91394259 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
91394216 TTTGATTAAT
* *
91394226 CTCTTCAAAACTTAGC
1 CTCTCCAAAAATTAGC
91394242 CTCTCCAAAAATTAGC
1 CTCTCCAAAAATTAGC
91394258 CT
1 CT
91394260 TTACAATAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (16 bp):
CTCTCCAAAAATTAGC
Found at i:91398706 original size:15 final size:16
Alignment explanation
Indices: 91398674--91398715 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
91398664 TGATAAAATG
* *
91398674 AAAATTAACTGTTGAA
1 AAAATTAAGTATTGAA
91398690 AAAATTAAGTATT-AA
1 AAAATTAAGTATTGAA
*
91398705 AAAGTTAAGTA
1 AAAATTAAGTA
91398716 GTTTTAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (16 bp):
AAAATTAAGTATTGAA
Found at i:91400813 original size:8 final size:9
Alignment explanation
Indices: 91400775--91400816 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
91400765 CCCATTTTGA
*
91400775 TTTAATTTT
1 TTTAATATT
91400784 TGTTAAATATT
1 T-TT-AATATT
91400795 TTTAATATT
1 TTTAATATT
91400804 TTTAAT-TT
1 TTTAATATT
91400812 TTTAA
1 TTTAA
91400817 AGGGAAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.23
9 13 0.43
10 4 0.13
11 6 0.20
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTAATATT
Found at i:91401421 original size:20 final size:20
Alignment explanation
Indices: 91401398--91401447 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
91401388 AAATCTAAAT
*
91401398 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGAA
* *
91401418 TAAAATCCTGAAATTCAGAA
1 TAAAATACTAAAATTCAGAA
91401438 TAAGAATACT
1 TAA-AATACT
91401448 GATGTGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGAA
Found at i:91401972 original size:5 final size:5
Alignment explanation
Indices: 91401962--91402002 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
91401952 TATATATAAA
91401962 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC C
1 CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC CAAAC C
91402003 CTTGCCTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.59, C:0.41, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAC
Found at i:91404488 original size:29 final size:30
Alignment explanation
Indices: 91404450--91404526 Score: 111
Period size: 29 Copynumber: 2.6 Consensus size: 30
91404440 ACAAAATAAT
*
91404450 AACATAAGTGACTAAAACGTAACAT-TTCA
1 AACATAAGTGACTAAAACGTAACATATGCA
*
91404479 AACATAAGTGACTAAAATGTAACATGATGCA
1 AACATAAGTGACTAAAACGTAACAT-ATGCA
*
91404510 AACAAAAGTGACTAAAA
1 AACATAAGTGACTAAAA
91404527 ATTGTCTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 24 0.56
31 19 0.44
ACGTcount: A:0.52, C:0.14, G:0.13, T:0.21
Consensus pattern (30 bp):
AACATAAGTGACTAAAACGTAACATATGCA
Found at i:91406807 original size:20 final size:22
Alignment explanation
Indices: 91406763--91406807 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
91406753 ATTTTAGTAA
*
91406763 TAAATTTTAACAATAATATTTT
1 TAAATTTTAACAATAATATTCT
*
91406785 TAAATTTT-A-AATGATATTCT
1 TAAATTTTAACAATAATATTCT
91406805 TAA
1 TAA
91406808 TATATTACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 1 0.05
22 8 0.38
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TAAATTTTAACAATAATATTCT
Found at i:91406833 original size:26 final size:25
Alignment explanation
Indices: 91406804--91406858 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
91406794 AATGATATTC
91406804 TTAATATATTACTAA-AAATAATTATA
1 TTAATATATTACTAATAAAT-A-TATA
* *
91406830 TTAATATTTTAGTAATAAATATATA
1 TTAATATATTACTAATAAATATATA
91406855 TTAA
1 TTAA
91406859 AATTTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
TTAATATATTACTAATAAATATATA
Found at i:91410458 original size:46 final size:46
Alignment explanation
Indices: 91410406--91410901 Score: 606
Period size: 46 Copynumber: 10.8 Consensus size: 46
91410396 AGTGTGCTCT
* **
91410406 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
** * *
91410452 CTGATATGAAATGTGTAAGACCATGGTTGAAACATACCATGGCAAG
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
91410498 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * *
91410544 ATGACGGGAAAATGAATAAGACCATGGTTGAAAAATACCATGACAAC
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* **
91410591 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
91410637 GTGATATGAAATGAATAAGACCAT-G--G-AAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
91410679 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
91410725 CTGACATGAAATGAGTAAGACCATGGTTGATAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
91410771 ATGACAGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
91410818 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
91410865 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATAC
91410902 TATGACATCA
Statistics
Matches: 407, Mismatches: 37, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
42 40 0.10
43 2 0.00
45 2 0.00
46 237 0.58
47 126 0.31
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91410597 original size:93 final size:92
Alignment explanation
Indices: 91410407--91410901 Score: 642
Period size: 93 Copynumber: 5.4 Consensus size: 92
91410397 GTGTGCTCTC
* * * * **
91410407 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
*
91410472 CCATGGTTGAAACATACCATGGCAA-G
66 CCATGGTTGAAAGATACCATGGCAACG
**
91410498 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAA
1 -TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAA
* *
91410563 GACCATGGTTGAAAAATACCATGACAACG
64 GACCATGGTTGAAAGATACCATGGCAACG
* * *
91410592 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
91410657 CCAT-G--G-AAGATACCATGGCAACG
66 CCATGGTTGAAAGATACCATGGCAACG
* * *
91410680 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
* *
91410745 CCATGGTTGATAGATACCATGGCAACA
66 CCATGGTTGAAAGATACCATGGCAACG
* * * **
91410772 TGACAGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAATAA
*
91410837 GACCATGGTTGAAAGATACCATGGCAACA
64 GACCATGGTTGAAAGATACCATGGCAACG
* * * *
91410866 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
91410902 TATGACATCA
Statistics
Matches: 360, Mismatches: 35, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
88 79 0.22
89 2 0.01
91 2 0.01
92 83 0.23
93 151 0.42
94 43 0.12
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (92 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGA
CCATGGTTGAAAGATACCATGGCAACG
Found at i:91412633 original size:24 final size:23
Alignment explanation
Indices: 91412578--91412639 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
91412568 TTCGGGTTGT
**
91412578 ATAACAGGAAGCTCATAAAAGTT
1 ATAACAGGAAGCTCATAAAAGCA
**
91412601 ATAATCAGGAAGCTCATGCAAGCCA
1 ATAA-CAGGAAGCTCATAAAAG-CA
*
91412626 ATAACAGGTAGCTC
1 ATAACAGGAAGCTC
91412640 CGAAAAACCA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 4 0.12
24 24 0.75
25 4 0.12
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (23 bp):
ATAACAGGAAGCTCATAAAAGCA
Found at i:91413208 original size:5 final size:5
Alignment explanation
Indices: 91413179--91413222 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
91413169 TAAATTTAGC
* *
91413179 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCAAT TCA
91413223 CATCCCAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:91417880 original size:39 final size:39
Alignment explanation
Indices: 91417835--91417994 Score: 212
Period size: 39 Copynumber: 4.1 Consensus size: 39
91417825 ATGCAAGACA
* * *
91417835 CTGGAAATGTATACGGGCTAAAGTCCCACAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
91417874 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
91417913 CTAGAAATGTATCCAGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * * *
91417952 CTGGAAACGTATCCGAGCTAAAGTCTCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
91417991 CTGG
1 CTGG
91417995 TAATATAATT
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:91420091 original size:19 final size:18
Alignment explanation
Indices: 91420049--91420098 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
91420039 TCATGCTTTC
* *
91420049 TATTCACATTTTCATATT
1 TATTCACATTTTCAAATA
91420067 TAATTCACATTTTCAAATCA
1 T-ATTCACATTTTCAAAT-A
91420087 TATTCCACATTT
1 TATT-CACATTT
91420099 ACGTTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 1 0.04
19 18 0.67
20 8 0.30
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (18 bp):
TATTCACATTTTCAAATA
Found at i:91420478 original size:18 final size:18
Alignment explanation
Indices: 91420457--91420493 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
91420447 ACAATTCATA
91420457 TCACTTTCAATTTCAATT
1 TCACTTTCAATTTCAATT
*
91420475 TCACTTTCACTTTCAATT
1 TCACTTTCAATTTCAATT
91420493 T
1 T
91420494 TGATCGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (18 bp):
TCACTTTCAATTTCAATT
Found at i:91422742 original size:18 final size:18
Alignment explanation
Indices: 91422721--91422758 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
91422711 TCTCATTTCT
91422721 TTTTTTCTATTCATTCCA
1 TTTTTTCTATTCATTCCA
*
91422739 TTTTTTCTATTCATTTCA
1 TTTTTTCTATTCATTCCA
91422757 TT
1 TT
91422759 CATTTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTTCTATTCATTCCA
Found at i:91423861 original size:16 final size:17
Alignment explanation
Indices: 91423840--91423872 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
91423830 CACATTGAAG
91423840 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
91423856 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
91423873 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:91430367 original size:17 final size:16
Alignment explanation
Indices: 91430345--91430405 Score: 59
Period size: 17 Copynumber: 3.7 Consensus size: 16
91430335 ATAAAAATAC
91430345 TAAAAAATATCAAAACA
1 TAAAAAATAT-AAAACA
* * *
91430362 TAAAAACTATTAAGCA
1 TAAAAAATATAAAACA
* *
91430378 TAAAAAAATAGAAAAAA
1 T-AAAAAATATAAAACA
91430395 TAAAAAATATA
1 TAAAAAATATA
91430406 TTTTTTACCT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
16 14 0.41
17 20 0.59
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (16 bp):
TAAAAAATATAAAACA
Found at i:91430518 original size:18 final size:18
Alignment explanation
Indices: 91430495--91430532 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
91430485 CCGGATTCCC
*
91430495 CTCTCTTCTCTCTCCCTT
1 CTCTCTTCCCTCTCCCTT
*
91430513 CTCTCTTCCCTCTCTCTT
1 CTCTCTTCCCTCTCCCTT
91430531 CT
1 CT
91430533 TTTTTTTCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (18 bp):
CTCTCTTCCCTCTCCCTT
Found at i:91430530 original size:11 final size:12
Alignment explanation
Indices: 91430499--91430531 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
91430489 ATTCCCCTCT
91430499 CTTCTCTC-TCC
1 CTTCTCTCTTCC
91430510 CTTCTCTCTTCC
1 CTTCTCTCTTCC
91430522 C-TCTCTCTTC
1 CTTCTCTCTTC
91430532 TTTTTTTTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTCTCTTCC
Found at i:91431014 original size:3 final size:3
Alignment explanation
Indices: 91430990--91431060 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
91430980 AATATCCTTG
* * * **
91430990 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
91431037 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
91431061 GTACGTGTAT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:91431057 original size:23 final size:22
Alignment explanation
Indices: 91431003--91431063 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 22
91430993 TTTTTATATT
*
91431003 ATTAGTATTATTA-GTATTACC
1 ATTATTATTATTATGTATTACC
**
91431024 ATTATTATTATTATGTATTAGT
1 ATTATTATTATTATGTATTACC
*
91431046 ATATATTTTTATTATGTA
1 AT-TATTATTATTATGTA
91431064 CGTGTATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.35
22 8 0.24
23 14 0.41
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (22 bp):
ATTATTATTATTATGTATTACC
Found at i:91431070 original size:23 final size:23
Alignment explanation
Indices: 91431026--91431071 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
91431016 GTATTACCAT
*
91431026 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTAGTAGTATA
*
91431049 TATTTTTATTATGTACGT-GTATA
1 TATTATTATTATGTA-GTAGTATA
91431072 CCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
TATTATTATTATGTAGTAGTATA
Found at i:91438804 original size:16 final size:16
Alignment explanation
Indices: 91438780--91438811 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91438770 TGCAAGAACT
*
91438780 TTAGGCCGAGAACCAG
1 TTAGACCGAGAACCAG
91438796 TTAGACCGAGAACCAG
1 TTAGACCGAGAACCAG
91438812 AATGGGAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.25, G:0.28, T:0.12
Consensus pattern (16 bp):
TTAGACCGAGAACCAG
Found at i:91443747 original size:56 final size:56
Alignment explanation
Indices: 91443661--91443775 Score: 169
Period size: 56 Copynumber: 2.1 Consensus size: 56
91443651 TTCCAAGGAA
**
91443661 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
** *
91443717 AATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 AATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
91443773 AAT
1 AAT
91443776 TTATGTTTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
55 1 0.02
56 52 0.98
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (56 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCCGAGGTATTTTT
Found at i:91443965 original size:74 final size:74
Alignment explanation
Indices: 91443717--91444490 Score: 879
Period size: 74 Copynumber: 10.4 Consensus size: 74
91443707 AGGTATTTTT
* * * * * * *
91443717 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
91443782 T-T----TA
66 TGTCAAAAA
** ** * *
91443786 AATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
91443851 TTTTC---AA
65 TTGTCAAAAA
*
91443858 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
91443923 TGTCAAAAA
66 TGTCAAAAA
**
91443932 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
91443997 TGTCAAAAA
66 TGTCAAAAA
** *
91444006 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
91444071 TTTTC---AA
65 TTGTCAAAAA
*
91444078 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
*
91444143 TGTAAAAAA
66 TGTCAAAAA
* ** *
91444152 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
* *
91444217 TTTTCAAGAA
65 TTGTCAAAAA
* * * *
91444227 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTTCAATTCCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA----T-T
* ***
91444292 TCAATTTATGTTTTTCAAA
61 TC--TGT-TG--TCAAAAA
91444311 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* ***
91444376 TTTTTCAAA
66 TGTCAAAAA
* * * * * *
91444385 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-G
91444450 TT-TCAAAAAAA
65 TTGTC--AAAAA
*
91444461 AATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATCAACTCATATTGCGAGAGGTGAGTTGA
91444491 ACCTTTTAAT
Statistics
Matches: 619, Mismatches: 62, Indels: 41
0.86 0.09 0.06
Matches are distributed among these distances:
69 54 0.09
70 2 0.00
71 8 0.01
72 120 0.19
74 263 0.42
75 69 0.11
76 33 0.05
77 2 0.00
79 4 0.01
80 4 0.01
81 1 0.00
82 2 0.00
84 57 0.09
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31
Consensus pattern (74 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TGTCAAAAA
Found at i:91443983 original size:146 final size:144
Alignment explanation
Indices: 91443717--91444623 Score: 897
Period size: 146 Copynumber: 6.2 Consensus size: 144
91443707 AGGTATTTTT
* * * * * * *
91443717 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
** ** *
91443782 TTT--AAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
66 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
*
91443845 TTTTGTTTTTC-AA
131 TTCTGTTTTTCAAA
*
91443858 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
* **
91443923 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 TTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
91443988 AATTTCTG-TTGTCAAAAA
128 AATTTCTGTTTTTC--AAA
** *
91444006 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
*
91444071 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
65 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
***
91444136 TTTCTGTTGTAAAAAA
130 TTTCTGTT-TTTCAAA
* ** *
91444152 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
* * *
91444217 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTT
65 TTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T
*
91444282 CAATTCCTGTTCAATTTATGTTTTTCAAA
122 -AA----T-TTCAATTTCTGTTTTTCAAA
91444311 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-
* * * *
91444376 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTC
65 -TTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* **
91444441 AAATTCT-ACTTTCAAAAAAA
128 AATTTCTGTTTTTC----AAA
* ** * *
91444461 AATCAACTCATATTGCGAGAGGT--G--G-G--T--TGA-AC-CT--TTTAATTTC---TACTTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
** * * *
91444510 TTCAAA-ATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAGAACACGCTGAGGTAATTTCAAT
66 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
*
91444574 TTCTG-TTGTCAAAAA
131 TTCTGTTTTTC--AAA
**
91444589 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
91444624 GGTTCACATG
Statistics
Matches: 650, Mismatches: 77, Indels: 83
0.80 0.10 0.10
Matches are distributed among these distances:
128 26 0.04
130 58 0.09
131 2 0.00
132 4 0.01
133 1 0.00
134 3 0.00
135 1 0.00
137 7 0.01
139 2 0.00
140 2 0.00
141 61 0.09
143 1 0.00
145 5 0.01
146 194 0.30
147 9 0.01
148 65 0.10
149 51 0.08
150 26 0.04
152 1 0.00
153 1 0.00
154 1 0.00
155 2 0.00
158 45 0.07
159 65 0.10
160 17 0.03
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (144 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTCTGTTTTTCAAA
Found at i:91444094 original size:220 final size:219
Alignment explanation
Indices: 91443717--91444623 Score: 1106
Period size: 220 Copynumber: 4.2 Consensus size: 219
91443707 AGGTATTTTT
* * * *
91443717 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAATTTATGT
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCTGT
* **
91443782 TT----TAAATTGACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
66 TTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
91443843 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
131 ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
91443908 AATTTCAATTTCTGTTGTCAAAAA
196 AATTTCAATTTCTGTTGTCAAAAA
* * *
91443932 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCTGT
*
91443997 TGTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
66 T-TCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
91444062 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
130 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
*
91444127 TAATTTCAATTTCTGTTGTAAAAAA
195 TAATTTCAATTTCTGTTGTCAAAAA
* * ***
91444152 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCTG-
* ** * *
91444217 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTATTTT
65 -TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG-----T
* *
91444282 CAATTCCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
124 -AA----T-TTCAATTTTTGTTTTTC-AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCA
* ***
91444347 GGACACGCTGAGGTAATTTCAATTTCTGTTTTTTCAAA
182 GGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * * * *
91444385 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAAATTCTAC
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCT-G
* *
91444450 TTTCAAAAAAAAATCAACTCATATTGCGAG--A-G-G-TG-G-GT--TGA-AC-C-----T--TT
65 TTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
** * *
91444497 T-AATTTCTACTTTTTCAAAATCAACTCATATTG-TGAGAGGTGAGTTGAACCTCAGAACACGCT
128 TCAATTT-TTGTTTTTCAAAATCAACTCATATTGCT-AGAGGTGAGTTGAGCCTCAGGACACGCT
91444560 GAGGTAATTTCAATTTCTGTTGTCAAAAA
191 GAGGTAATTTCAATTTCTGTTGTCAAAAA
*
91444589 AATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC
91444624 GGTTCACATG
Statistics
Matches: 612, Mismatches: 56, Indels: 59
0.84 0.08 0.08
Matches are distributed among these distances:
204 106 0.17
205 8 0.01
206 1 0.00
213 1 0.00
215 59 0.10
216 1 0.00
220 201 0.33
221 50 0.08
222 2 0.00
224 1 0.00
225 2 0.00
226 1 0.00
227 3 0.00
228 1 0.00
229 2 0.00
230 1 0.00
231 2 0.00
232 20 0.03
233 127 0.21
234 23 0.04
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (219 bp):
AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTCAATTTCTGT
TTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCAATTTCTGTTGTCAAAAA
Found at i:91444446 original size:159 final size:159
Alignment explanation
Indices: 91444149--91444442 Score: 466
Period size: 159 Copynumber: 1.9 Consensus size: 159
91444139 CTGTTGTAAA
* *
91444149 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* **
91444214 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCGTTGAGGTAT
66 TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
91444279 TTTCAATTCCTGTTCAATTTATGTTTTTC
131 TTTCAATTCCTGTTCAATTTATGTTTTTC
* *
91444308 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
* ** *
91444373 TGTTTTTTC-A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGAGGTA
66 TG-CTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTA
91444436 TTTTCAA
130 TTTTCAA
91444443 ATTCTACTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
158 54 0.44
159 64 0.52
160 5 0.04
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTAATTTCAATTTC
TGCTTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTAT
TTTCAATTCCTGTTCAATTTATGTTTTTC
Found at i:91444535 original size:130 final size:129
Alignment explanation
Indices: 91444367--91444608 Score: 344
Period size: 130 Copynumber: 1.9 Consensus size: 129
91444357 AGGTAATTTC
** * * **
91444367 AATTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCCGA
1 AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
*
91444432 GGTATTTTCAAATTCTACTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTT
66 GGTAATTTCAAATTCT-CTTGTC--AAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTT
91444496 TT
128 TT
* *
91444498 AATTTCTACTTTTTC-AAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAGAACACGCTGA
1 AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
* *
91444562 GGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGA
66 GGTAATTTCAAATTCTCTTGTCAAAAAAATCAACTCATATTGCGAGA
91444609 AATGAGTTGA
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
128 25 0.25
129 2 0.02
130 59 0.60
131 13 0.13
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (129 bp):
AATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGAACACGCCGA
GGTAATTTCAAATTCTCTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTT
Found at i:91446649 original size:68 final size:66
Alignment explanation
Indices: 91446577--91446982 Score: 204
Period size: 68 Copynumber: 6.2 Consensus size: 66
91446567 CATCATGTGT
*
91446577 ACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGACA-TATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
91446642 TAG
64 TAG
** * * * ***
91446645 ACAAGAGAGCTAC-GGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCCCG-GTTGA-ACC-T-
1 ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCATG
*
91446704 TCGG
64 T-AG
* * * ** * *
91446708 A-AAGATTGGATGATACAG--AT-GGTATGTAGCTAGGTCACATGTAT-AGTGCTGA-GTGCACA
1 ACAAGA---GA-GCTACAGACATATG-ATGTAGCTAGGTCGCATGGGTGA-TACT-ATGTGTACA
*
91446767 TCATGT-G
59 CCATGTAG
91446774 TACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
1 -ACAAGAGAGCTAC-AGACA-TATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAT
91446839 GTAG
63 GTAG
** * * * * * *
91446843 ACAAGAGAGCTAC-GGGATAT-ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCAT
1 ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCAT
91446906 GTAG
63 GTAG
* * * * * *
91446910 ACAAGAGAGCTAC-GAGATA-AACT-T-GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ACAAGAGAGCTACAGACATATGA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
91446971 -G
65 AG
91446972 TACAAGAGAGC
1 -ACAAGAGAGC
91446983 CGAACTATAT
Statistics
Matches: 259, Mismatches: 47, Indels: 69
0.69 0.13 0.18
Matches are distributed among these distances:
62 6 0.02
63 23 0.09
64 53 0.20
65 24 0.09
66 48 0.19
67 38 0.15
68 64 0.25
69 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (66 bp):
ACAAGAGAGCTACAGACATATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
G
Found at i:91446831 original size:198 final size:198
Alignment explanation
Indices: 91446493--91446889 Score: 767
Period size: 198 Copynumber: 2.0 Consensus size: 198
91446483 AGAGAGAAAT
91446493 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
*
91446558 TTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
91446623 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
91446688 TTC
196 TTC
*
91446691 CCCGGTTGAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
1 CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
*
91446756 CTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
66 CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
91446821 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
131 ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
91446886 TTC
196 TTC
91446889 C
1 C
91446890 AAGTGAAGGA
Statistics
Matches: 196, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
198 196 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (198 bp):
CCCGGTTGAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTG
CTGAGTGCACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTG
ATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGG
TTC
Found at i:91446972 original size:198 final size:196
Alignment explanation
Indices: 91446500--91446982 Score: 600
Period size: 198 Copynumber: 2.4 Consensus size: 196
91446490 AATCCCGGTT
** * ** *
91446500 GAACCTTCAGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGTTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTG
*
91446565 CACATCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
64 CACACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
**
91446630 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCCCG
129 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
**
91446695 GTT
194 GAG
* ** * * *
91446698 GAACCTTCGGAAAGATTGGATGATACAGATGGTATGTAGCTAGGTCACATGTATAGTGCTGAGTG
1 GAACCTTCAGAAAGA-T-GATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTG
* *
91446763 CACATCATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
64 CACACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTAT
91446828 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
129 GTGTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAG
91446893 TGAAG
194 -G-AG
* * *
91446898 GACACCATGT-AGACAAGA-GA-GCTACGAGAT-AAACT-T-GCTAGGTCACATGGGTGGTACTA
1 GA-ACC-T-TCAGA-AAGATGATGATAC-AGATGAAA-TGTAGCTAGGTCACATGGATAGTACTA
**
91446957 AGTGTTCACCATGTGTACAAGAGAGC
60 AGTGCACACCATGTGTACAAGAGAGC
91446983 CGAACTATAT
Statistics
Matches: 258, Mismatches: 19, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
198 231 0.90
199 7 0.03
200 9 0.03
201 3 0.01
202 3 0.01
203 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (196 bp):
GAACCTTCAGAAAGATGATGATACAGATGAAATGTAGCTAGGTCACATGGATAGTACTAAGTGCA
CACCATGTGTACAAGAGAGCAACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGT
GTACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGGA
G
Found at i:91455278 original size:18 final size:19
Alignment explanation
Indices: 91455236--91455280 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
91455226 TCAAGATCTT
*
91455236 AAATTAATGTGGTCCAAAG
1 AAATTAATGTGATCCAAAG
91455255 AAATTAATGTGATCCAAA-
1 AAATTAATGTGATCCAAAG
91455273 AAATTAAT
1 AAATTAAT
91455281 TAGTACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (19 bp):
AAATTAATGTGATCCAAAG
Found at i:91455593 original size:24 final size:24
Alignment explanation
Indices: 91455566--91455645 Score: 83
Period size: 24 Copynumber: 3.3 Consensus size: 24
91455556 AAATATGTTG
91455566 AATAATAATACTTATAACTTTAAT
1 AATAATAATACTTATAACTTTAAT
* * *
91455590 AATAATAATA-TT-TAACAATCATAC
1 AATAATAATACTTATAAC-TTTA-AT
*
91455614 AATAATAATACTTATAATATTTAAT
1 AATAATAATACTTATAA-CTTTAAT
91455639 AATAATA
1 AATAATA
91455646 CAATAATAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
22 4 0.09
23 4 0.09
24 21 0.48
25 10 0.23
26 5 0.11
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (24 bp):
AATAATAATACTTATAACTTTAAT
Found at i:91455622 original size:30 final size:30
Alignment explanation
Indices: 91455586--91455670 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 30
91455576 CTTATAACTT
*
91455586 TAATAATAATAATATTTAACAATCATACAA
1 TAATAATAATAATATTTAACAATAATACAA
*
91455616 TAATAATACTTATAATATTTAATAATAATACAA
1 TAATAATA---ATAATATTTAACAATAATACAA
* *
91455649 TAATAAAAAT-ATGTTTAACAAT
1 TAATAATAATAATATTTAACAAT
91455671 TAAATGAGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
29 10 0.21
30 10 0.21
33 27 0.57
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (30 bp):
TAATAATAATAATATTTAACAATAATACAA
Found at i:91458189 original size:7 final size:7
Alignment explanation
Indices: 91458177--91458206 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
91458167 AAATTTCCTT
91458177 TTATATA
1 TTATATA
91458184 TTATATA
1 TTATATA
91458191 TTATATA
1 TTATATA
91458198 TTATATA
1 TTATATA
91458205 TT
1 TT
91458207 TTAAACTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTATATA
Found at i:91458357 original size:9 final size:10
Alignment explanation
Indices: 91458343--91458367 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
91458333 TATATATACA
91458343 TTTTTTTATT
1 TTTTTTTATT
91458353 TTTTTTTATT
1 TTTTTTTATT
91458363 TTTTT
1 TTTTT
91458368 AAAGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:91459153 original size:128 final size:126
Alignment explanation
Indices: 91458961--91459310 Score: 398
Period size: 128 Copynumber: 2.7 Consensus size: 126
91458951 AACGAAAGTG
* * * *
91458961 ATGTTTGATGTTTAGAAATTCGAGGGATTGTACCCTAATGTGTTGGGTTTCGGTCTTTCGTTTGT
1 ATGTTTGATG-TTAGAAATTCGAGGGATCGTGCCCTAATGTGTTGGGTTTCGATCTTTTGTTTGT
* * * * *
91459026 CTAAATAGTCAAATTTCCCTTTAAAATTTGATCTGCGTTTTCTAAACCATTAAAACGAATGCA
65 CTAAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCT-AACCATTAAAACAAAAGCA
* * *
91459089 ATGTTTGATGCTTAGAAATTCGAGGGATCGTGTCCTAATGTGTTGAGTTTCGATCTTTTATTTGT
1 ATGTTTGATG-TTAGAAATTCGAGGGATCGTGCCCTAATGTGTTGGGTTTCGATCTTTTGTTTGT
* * * * *
91459154 CTAAATAATCAGATTTCCCTTTTAAATTTCATCCGCGTTTTCTAAGCTTTAAAACAAAAGCG
65 CTAAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCTAACCATTAAAACAAAAGCA
* * ** *
91459216 ATGATTGATGTTTGAGAATTCG-GAAAATCGTGCCCTAATGTGCTGGGTTTCGAT-TTTCTGTTT
1 ATGTTTGATGTTAGA-AATTCGAG-GGATCGTGCCCTAATGTGTTGGGTTTCGATCTTT-TGTTT
* * **
91459279 ATATAAATAATCAAACATCCCTTTAAAATTTC
63 GTCTAAATAATCAAATTTCCCTTTAAAATTTC
91459311 GTTTGCATTT
Statistics
Matches: 187, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
126 8 0.04
127 84 0.45
128 95 0.51
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (126 bp):
ATGTTTGATGTTAGAAATTCGAGGGATCGTGCCCTAATGTGTTGGGTTTCGATCTTTTGTTTGTC
TAAATAATCAAATTTCCCTTTAAAATTTCATCCGCGTTTTCTAACCATTAAAACAAAAGCA
Found at i:91460911 original size:3 final size:3
Alignment explanation
Indices: 91460903--91460937 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
91460893 TAATAAAGTC
* *
91460903 ATT ATT ATT ATT ATT ATT ATT TTT ATT TTT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
91460938 ATATATATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
ATT
Found at i:91462618 original size:5 final size:5
Alignment explanation
Indices: 91462603--91462659 Score: 78
Period size: 5 Copynumber: 11.2 Consensus size: 5
91462593 AGTGGAAAAG
* *
91462603 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT GGAAT GGAAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
*
91462654 GGAAT T
1 TGAAT T
91462660 ATGATTAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
5 45 0.92
6 4 0.08
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.37
Consensus pattern (5 bp):
TGAAT
Found at i:91463138 original size:45 final size:45
Alignment explanation
Indices: 91463074--91463213 Score: 217
Period size: 45 Copynumber: 3.1 Consensus size: 45
91463064 CTGCTACTGC
* * *
91463074 TACTGCTACTGTTACCGATTCGGCACTTTATGTGTCGAATATTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
91463119 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
* * * *
91463164 TACTGTTACCGTTACCGATTCAACACTTTGTGTGTTGAATACTGT
1 TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
91463209 TACTG
1 TACTG
91463214 TTACTGTTCC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (45 bp):
TACTGCTACCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
Found at i:91463418 original size:18 final size:18
Alignment explanation
Indices: 91463397--91463667 Score: 140
Period size: 18 Copynumber: 14.6 Consensus size: 18
91463387 TAACTGATTA
91463397 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
91463415 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
91463433 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
91463451 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
91463469 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* * *
91463487 TTACTGAATAACTAATTG
1 TTACTGAATAATTGACTG
* * *
91463505 TCACTGAATGAA-TGCCTA
1 TTACTGAAT-AATTGACTG
* * *
91463523 CTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
* *
91463542 TTACTGAAT-ATCT-AATT
1 TTACTGAATAAT-TGACTG
91463559 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
91463577 TTACTGGATAACCGATCAATTGA-TCG
1 TTACT-G---A---AT-AATTGACT-G
* * ** *
91463603 ATACTGAATAACTGGTTA
1 TTACTGAATAATTGACTG
*
91463621 TTATTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
91463639 TTACCGAATAACTGACTG
1 TTACTGAATAATTGACTG
91463657 TTACTGAATAA
1 TTACTGAATAA
91463668 ATAATTGTTC
Statistics
Matches: 192, Mismatches: 41, Indels: 40
0.70 0.15 0.15
Matches are distributed among these distances:
17 19 0.10
18 137 0.71
19 19 0.10
22 2 0.01
25 4 0.02
26 11 0.06
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:91466286 original size:12 final size:12
Alignment explanation
Indices: 91466271--91466296 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91466261 TCTATTTGAG
91466271 TTTTTGTTTGCT
1 TTTTTGTTTGCT
91466283 TTTTTGTTTGCT
1 TTTTTGTTTGCT
91466295 TT
1 TT
91466297 ATTAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.15, T:0.77
Consensus pattern (12 bp):
TTTTTGTTTGCT
Found at i:91467379 original size:45 final size:46
Alignment explanation
Indices: 91467306--91467612 Score: 121
Period size: 46 Copynumber: 6.7 Consensus size: 46
91467296 TTGTTCAACA
* * * * * *
91467306 GATGTCATAGCGTCTCTCATCCACGGTCTTATTTATCTT-TGACAT
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTCTGACAT
* * *
91467351 GATGTCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAT
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTCTGACAT
* * * * ** *
91467397 GTTGCCATGGTATCTTTCAACCATGGTCTTGTTCAT-TTCAT-ATCAC
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTC-TGA-CAT
* * * * * *
91467443 GTTGCCATGGTATCTTTCAACCATGGTCTTACACAT-TTCAT-ATCAG
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTC-TGA-CAT
* * * * * * *
91467489 GTTGCCATGGTATCTTTCAACCATGGTTTTACACAT-TTCAT-ATCAG
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTC-TGA-CAT
* * * * *
91467535 GCTGTCATGGTATCTTTCAACTATGGTCTTA-TACAT-TTCAT-ATCAG
1 GATGTCATAGTGTCTTTCAACCATGGTCTTACT-CATCTTC-TGA-CAT
* * * *
91467581 GCTGCCATGGTATCTTTCAACCATGGTCTTAC
1 GATGTCATAGTGTCTTTCAACCATGGTCTTAC
91467613 ACATTTCATA
Statistics
Matches: 227, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
45 34 0.15
46 193 0.85
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (46 bp):
GATGTCATAGTGTCTTTCAACCATGGTCTTACTCATCTTCTGACAT
Found at i:91467415 original size:46 final size:46
Alignment explanation
Indices: 91467363--91467626 Score: 386
Period size: 46 Copynumber: 5.7 Consensus size: 46
91467353 TGTCATAGTG
* * * *
91467363 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
*** *
91467409 TCTTTCAACCATGGTCTTGTTCATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
91467455 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
91467501 TCTTTCAACCATGGTTTTACACATTTCATATCAGGCTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
91467547 TCTTTCAACTATGGTCTTATACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
91467593 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
91467627 AGAGCACACT
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 195 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:91471348 original size:46 final size:46
Alignment explanation
Indices: 91471288--91471561 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
91471278 TTTGACATGA
* * * * *
91471288 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
*
91471334 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* * * * *
91471380 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
91471426 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
91471472 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
91471518 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
91471562 AGAGCACACT
Statistics
Matches: 211, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 207 0.98
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:91471445 original size:92 final size:92
Alignment explanation
Indices: 91471288--91471561 Score: 449
Period size: 92 Copynumber: 3.0 Consensus size: 92
91471278 TTTGACATGA
* * *
91471288 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
91471353 CATGGTCTTATTCATTTCATATCAGGT
66 CATGGTCTTATTCATTTCATATCAGGT
*
91471380 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
91471445 CATGGTCTTATTCATTTCATATCAGGT
66 CATGGTCTTATTCATTTCATATCAGGT
* * * * *
91471472 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
**
91471537 CATGGTCTTACACATTTCATATCAG
66 CATGGTCTTATTCATTTCATATCAG
91471562 AGAGCACACT
Statistics
Matches: 170, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 170 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.41
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCAGGT
Found at i:91474051 original size:30 final size:30
Alignment explanation
Indices: 91473984--91474051 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
91473974 CACCCTTAAA
* * * *
91473984 ATATTTGCACTATTAGTCCTTCAACTTTTT
1 ATATTTACACTATTAATCCTTCAAATTTTG
91474014 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTG
91474043 ACTATTTAC
1 A-TATTTAC
91474052 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTG
Found at i:91479578 original size:23 final size:23
Alignment explanation
Indices: 91479548--91479591 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
91479538 TTAATCCAAC
91479548 ATTGGCTAAAGAACACTCACAAT
1 ATTGGCTAAAGAACACTCACAAT
91479571 ATTGGCTAAAGAACACTCACA
1 ATTGGCTAAAGAACACTCACA
91479592 TAGTCACACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.23, G:0.14, T:0.20
Consensus pattern (23 bp):
ATTGGCTAAAGAACACTCACAAT
Found at i:91482620 original size:25 final size:25
Alignment explanation
Indices: 91482591--91482690 Score: 146
Period size: 25 Copynumber: 4.0 Consensus size: 25
91482581 ACTCAACTAA
*
91482591 CATGAGTTTCCCGTTATTCAGCTCG
1 CATGAGCTTCCCGTTATTCAGCTCG
* *
91482616 TATGAGCTTCCCGTTATTCAGCTTG
1 CATGAGCTTCCCGTTATTCAGCTCG
*
91482641 CATGAGCTTCCCATTATTCAGCTCG
1 CATGAGCTTCCCGTTATTCAGCTCG
* *
91482666 CATGATCTTCCCGTTATTCGGCTCG
1 CATGAGCTTCCCGTTATTCAGCTCG
91482691 AAGAAGCTTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.16, C:0.29, G:0.19, T:0.36
Consensus pattern (25 bp):
CATGAGCTTCCCGTTATTCAGCTCG
Found at i:91482620 original size:50 final size:50
Alignment explanation
Indices: 91482557--91482678 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 50
91482547 GGTCACCGAT
* * * * *
91482557 TTCAACTCTTATGAGCTTCCTGATACTCAACTAACATGAGTTTCCCGTTA
1 TTCAGCTCGTATGAGCTTCCCGATACTCAACTAACATGAGCTTCCCATTA
* * * **
91482607 TTCAGCTCGTATGAGCTTCCCGTTATTCAGCTTGCATGAGCTTCCCATTA
1 TTCAGCTCGTATGAGCTTCCCGATACTCAACTAACATGAGCTTCCCATTA
* *
91482657 TTCAGCTCGCATGATCTTCCCG
1 TTCAGCTCGTATGAGCTTCCCG
91482679 TTATTCGGCT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.20, C:0.29, G:0.16, T:0.35
Consensus pattern (50 bp):
TTCAGCTCGTATGAGCTTCCCGATACTCAACTAACATGAGCTTCCCATTA
Found at i:91485872 original size:43 final size:41
Alignment explanation
Indices: 91485796--91485901 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 41
91485786 CAGAAAACTC
* * *
91485796 ATACAATGCCAACGTCCTAGAC-GTGGTCTTACATGTAATCAA
1 ATACAATGCCAA-GTCCCAGACAG-GGTCATACATGAAATCAA
* * *
91485838 ATATCGATGCCACTGTCCCAGACAGGGTCATACATGAAATTAA
1 ATA-CAATGCCA-AGTCCCAGACAGGGTCATACATGAAATCAA
91485881 ATACAATGCCAAGTCCCAGAC
1 ATACAATGCCAAGTCCCAGAC
91485902 GTGGTCTTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
41 9 0.17
42 10 0.19
43 33 0.62
44 1 0.02
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (41 bp):
ATACAATGCCAAGTCCCAGACAGGGTCATACATGAAATCAA
Found at i:91490027 original size:14 final size:14
Alignment explanation
Indices: 91490008--91490034 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
91489998 ATATTTAACT
91490008 TGTTCTTAATTATG
1 TGTTCTTAATTATG
91490022 TGTTCTTAATTAT
1 TGTTCTTAATTAT
91490035 TGCTTTAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:91493152 original size:13 final size:13
Alignment explanation
Indices: 91493134--91493161 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91493124 CTGGACTTCC
91493134 TCACACGGCCATG
1 TCACACGGCCATG
91493147 TCACACGGCCATG
1 TCACACGGCCATG
91493160 TC
1 TC
91493162 CCTTTGGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.39, G:0.21, T:0.18
Consensus pattern (13 bp):
TCACACGGCCATG
Found at i:91503304 original size:38 final size:38
Alignment explanation
Indices: 91503262--91503444 Score: 240
Period size: 38 Copynumber: 4.8 Consensus size: 38
91503252 TAAAATCTGT
* * *
91503262 AGGCTTTGTACTGGTATTATATCCGGGTTAAATCCCAC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
*
91503300 AGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
91503338 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
* * * * *
91503376 AGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCGT
1 AGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-TCCCGC
* * *
91503416 AGGCTTCGTGCTGGTGTTATGTTCGGGTT
1 AGGCTTCGTGCTGGTATTATATCCGGGTT
91503445 TTATACATCG
Statistics
Matches: 126, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 93 0.74
39 9 0.07
40 24 0.19
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGC
Found at i:91506066 original size:26 final size:26
Alignment explanation
Indices: 91506037--91506092 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
91506027 TATGTTTTGT
*
91506037 CTTGATATTTAGTCTATATTATTTAA
1 CTTGATATTAAGTCTATATTATTTAA
* *
91506063 CTTGTTCTTAAGTCTATATTATTTAA
1 CTTGATATTAAGTCTATATTATTTAA
91506089 CTTG
1 CTTG
91506093 TTCTTAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.54
Consensus pattern (26 bp):
CTTGATATTAAGTCTATATTATTTAA
Found at i:91506093 original size:26 final size:26
Alignment explanation
Indices: 91506047--91506099 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
91506037 CTTGATATTT
91506047 AGTCTATATTATTTAACTTGTTCTTA
1 AGTCTATATTATTTAACTTGTTCTTA
91506073 AGTCTATATTATTTAACTTGTTCTTA
1 AGTCTATATTATTTAACTTGTTCTTA
91506099 A
1 A
91506100 AAAAAAACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (26 bp):
AGTCTATATTATTTAACTTGTTCTTA
Found at i:91508169 original size:14 final size:14
Alignment explanation
Indices: 91508150--91508179 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91508140 TTATATCGAG
91508150 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
91508164 ACCAATCCAATTCA
1 ACCAATCCAAATCA
91508178 AC
1 AC
91508180 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:91508955 original size:59 final size:60
Alignment explanation
Indices: 91508863--91509002 Score: 266
Period size: 59 Copynumber: 2.4 Consensus size: 60
91508853 TATTGTCGGG
91508863 ATTACCAGTCCAGGCTAAA-TCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
91508922 ATTACCAGTCCAGGCTAAATTCCC-TGCAACGACAATTACTCTAATGAGCTTGGATCTGA
1 ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
91508981 ATTACCAGTCCAGGCTAAATTC
1 ATTACCAGTCCAGGCTAAATTC
91509003 AGACCCTAAT
Statistics
Matches: 80, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
59 76 0.95
60 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (60 bp):
ATTACCAGTCCAGGCTAAATTCCCTTGCAACGACAATTACTCTAATGAGCTTGGATCTGA
Found at i:91510884 original size:24 final size:24
Alignment explanation
Indices: 91510852--91510922 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
91510842 CTGTCAGGAG
91510852 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
91510876 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
91510900 AGGATTTAGGAGTAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
91510923 GGAAATCTAG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.38, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:91510934 original size:48 final size:48
Alignment explanation
Indices: 91510852--91510945 Score: 120
Period size: 48 Copynumber: 1.9 Consensus size: 48
91510842 CTGTCAGGAG
* * *
91510852 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGA-TAAGGGAT
1 AGGATTTAGGAGTAGATAAGGGA-AGGATCTAGGAGCTGATTAAGGGAT
91510900 AGGATTTAGGAGTAGATAAGGG-AGGAAATCTAGGAGCTGATTAAGG
1 AGGATTTAGGAGTAGATAAGGGAAGG--ATCTAGGAGCTGATTAAGG
91510946 AACAAGAGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.80
49 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.37, T:0.26
Consensus pattern (48 bp):
AGGATTTAGGAGTAGATAAGGGAAGGATCTAGGAGCTGATTAAGGGAT
Found at i:91512437 original size:26 final size:26
Alignment explanation
Indices: 91512330--91512440 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
91512320 AGGAAGCATC
* * *
91512330 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGACTCTGCCACA-TTATCTGTT
* *
91512357 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGACTCTGCCACAT-TATCTGTT
91512384 CTGGTGACTCTGCCACAATTATCTGTT
1 CTGGTGACTCTGCCAC-ATTATCTGTT
*
91512411 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGACTCTGCCACATTATCTGTT
91512437 CTGG
1 CTGG
91512441 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGACTCTGCCACATTATCTGTT
Found at i:91518899 original size:14 final size:14
Alignment explanation
Indices: 91518880--91518909 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91518870 TTATATCGAG
91518880 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
91518894 ACCAATCCAATTCA
1 ACCAATCCAAATCA
91518908 AC
1 AC
91518910 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:91524178 original size:11 final size:11
Alignment explanation
Indices: 91524162--91524189 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
91524152 ATAAGAATTG
91524162 AAAATAATATT
1 AAAATAATATT
91524173 AAAATAATATT
1 AAAATAATATT
91524184 AAAATA
1 AAAATA
91524190 TTATAACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATAATATT
Found at i:91537987 original size:23 final size:23
Alignment explanation
Indices: 91537961--91538005 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91537951 TAGGTATGTG
*
91537961 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91537984 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91538006 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91544636 original size:23 final size:23
Alignment explanation
Indices: 91544610--91544654 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
91544600 TAAGTATGTG
*
91544610 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
91544633 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
91544655 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:91550028 original size:47 final size:47
Alignment explanation
Indices: 91549974--91550305 Score: 477
Period size: 47 Copynumber: 7.1 Consensus size: 47
91549964 TTAGGATTTT
** * * *
91549974 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91550021 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91550068 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
91550115 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91550162 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
***
91550209 ATGTGATGAATGTGAACATGCATATATGTGATAAGGAAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
91550256 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
91550303 ATG
1 ATG
91550306 CGAAATGTGT
Statistics
Matches: 263, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 260 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91550098 original size:25 final size:25
Alignment explanation
Indices: 91550069--91550193 Score: 85
Period size: 25 Copynumber: 5.2 Consensus size: 25
91550059 GAATGGCCAA
91550069 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
91550094 TGTGAT-AAGGCCG-A-ATGGCCA-A--
1 TGTGATGAATG-TGAACAT-G-CATATG
91550116 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
*
91550141 TGTGAT-AAGGTCG-A-ATGGCCA-A--
1 TGTGATGAATGT-GAACAT-G-CATATG
91550163 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
91550188 TGTGAT
1 TGTGAT
91550194 AAGGCCGAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 36
0.64 0.05 0.31
Matches are distributed among these distances:
22 18 0.24
23 17 0.22
24 17 0.22
25 24 0.32
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:91550168 original size:22 final size:22
Alignment explanation
Indices: 91550094--91550215 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
91550084 CATGCATATG
*
91550094 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGCCAA
*
91550116 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
91550139 TGTGTGATAAGGTCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
*
91550163 TGTGATGAATGT-GAACAT-G-CATA
1 TGTGAT-AAGGTCG-A-ATGGCCA-A
*
91550186 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGCCAA
91550210 TGTGAT
1 TGTGAT
91550216 GAATGTGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 36
0.64 0.05 0.31
Matches are distributed among these distances:
22 24 0.32
23 17 0.22
24 17 0.22
25 18 0.24
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGCCAA
Found at i:91550335 original size:46 final size:46
Alignment explanation
Indices: 91550279--91550461 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
91550269 GGAAGTGTAT
* *
91550279 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
91550325 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
91550371 ATATGAGGTAAAGTCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
91550417 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
91550462 TGTATATATA
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:91554156 original size:19 final size:18
Alignment explanation
Indices: 91554119--91554162 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
91554109 ATACATACAG
91554119 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
91554136 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
91554155 TACTAATT
1 TAATAATT
91554163 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:91558267 original size:46 final size:46
Alignment explanation
Indices: 91558217--91558392 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
91558207 TGGTTGAGCA
91558217 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
91558263 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
91558308 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
91558356 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91558393 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:91558373 original size:93 final size:93
Alignment explanation
Indices: 91558214--91558385 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
91558204 GGATGGTTGA
***
91558214 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTAAGT
91558279 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
91558307 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTAAGT
91558372 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
91558386 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTAAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91562642 original size:13 final size:13
Alignment explanation
Indices: 91562626--91562650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91562616 ATAAATTCGT
91562626 AAATATTTATGAG
1 AAATATTTATGAG
91562639 AAATATTTATGA
1 AAATATTTATGA
91562651 AGCTAGTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATATTTATGAG
Found at i:91562912 original size:29 final size:30
Alignment explanation
Indices: 91562871--91562930 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
91562861 TATTATTGTT
91562871 ATTATTGTCATTATATTA-CAAATTAAATTA
1 ATTATTGTCATTATATTATCAAA-TAAATTA
* *
91562901 ATTA-TGTTATTATATTATGAAATAAATTA
1 ATTATTGTCATTATATTATCAAATAAATTA
91562930 A
1 A
91562931 GAAAAGACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (30 bp):
ATTATTGTCATTATATTATCAAATAAATTA
Found at i:91563216 original size:16 final size:17
Alignment explanation
Indices: 91563187--91563227 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
91563177 ATATATATAT
*
91563187 AAAGTAAAAGGAATA-AA
1 AAAG-AAAAAGAATAGAA
91563204 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAGAA
91563221 AAAGAAA
1 AAAGAAA
91563228 GAAAGGATGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (17 bp):
AAAGAAAAAGAATAGAA
Done.