Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 285 of 320
Found at i:91564328 original size:51 final size:53
Alignment explanation
Indices: 91564266--91564380 Score: 144
Period size: 51 Copynumber: 2.2 Consensus size: 53
91564256 ATGTGTCGAC
* *
91564266 TACTGTGACTGTTTCGGATTCCTTCCGAAGAGGTAC-TCTGTACC-TGACTGT
1 TACTGTTACTGTTTCAGATTCCTTCCGAAGAGGTACTTCTGTACCATGACTGT
* * * * *
91564317 TACTGTTACTGTTTCAGATTCGTTTCGATGAGGTACTTTGTGTACCATTACTGT
1 TACTGTTACTGTTTCAGATTCCTTCCGAAGAGGTAC-TTCTGTACCATGACTGT
91564371 TACTGTTACT
1 TACTGTTACT
91564381 ATTACTGTTA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
51 31 0.57
53 7 0.13
54 16 0.30
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.41
Consensus pattern (53 bp):
TACTGTTACTGTTTCAGATTCCTTCCGAAGAGGTACTTCTGTACCATGACTGT
Found at i:91564375 original size:6 final size:6
Alignment explanation
Indices: 91564364--91564397 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
91564354 TTGTGTACCA
* *
91564364 TTACTG TTACTG TTACTA TTACTG TTACCG TTAC
1 TTACTG TTACTG TTACTG TTACTG TTACTG TTAC
91564398 GGTGTATTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
TTACTG
Found at i:91564386 original size:18 final size:18
Alignment explanation
Indices: 91564363--91564397 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91564353 TTTGTGTACC
*
91564363 ATTACTGTTACTGTTACT
1 ATTACTGTTACCGTTACT
91564381 ATTACTGTTACCGTTAC
1 ATTACTGTTACCGTTAC
91564398 GGTGTATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (18 bp):
ATTACTGTTACCGTTACT
Found at i:91564548 original size:18 final size:18
Alignment explanation
Indices: 91564527--91564579 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
91564517 GACTGCTACG
*
91564527 GAATAATTGACTGTTATT
1 GAATAAATGACTGTTATT
* * *
91564545 GAATAAATAACTATTACT
1 GAATAAATGACTGTTATT
* *
91564563 GCATAACTGACTGTTAT
1 GAATAAATGACTGTTAT
91564580 AGAGTGCCGG
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (18 bp):
GAATAAATGACTGTTATT
Found at i:91566861 original size:52 final size:48
Alignment explanation
Indices: 91566803--91567014 Score: 178
Period size: 52 Copynumber: 4.2 Consensus size: 48
91566793 GATAGAAAAG
*
91566803 ATGTGATATGTGCTTCCGTTTAAGACCATAGCTGGGCTATGGCATCGGT
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
91566852 ACAATGTGAT-TCGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 ---ATGTGATAT-GTGTT-CCGTATAAGACCATAGCTGGGCTATGGCATC-G-GT
* * * * * *
91566906 GATGTGATAATGTGATTCCATAGAATACCATATCTGGGATATGGCATTGGT
1 -ATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
* * * * *
91566957 ATGT--TATGTGATCCGTGTAAGACCATGGCAGGGCTATGGCTTCGGT
1 ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
* *
91567003 GTGTGATGTGTG
1 ATGTGATATGTG
91567015 ACAATGTGAC
Statistics
Matches: 130, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
46 28 0.22
47 5 0.04
48 6 0.05
50 4 0.03
51 5 0.04
52 48 0.37
53 29 0.22
54 5 0.04
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (48 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
Found at i:91569927 original size:25 final size:25
Alignment explanation
Indices: 91569886--91570012 Score: 137
Period size: 25 Copynumber: 5.1 Consensus size: 25
91569876 GGTCACCGAT
** *
91569886 TTCAGCTCTTATGAGCTTCCCAATA
1 TTCAGCTCGCATGAGCTTCCCATTA
* * **
91569911 CTCAGCTCGCATAAGCTTCCTGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
*
91569936 TTCAGCTCGCATGAGCTTCCTATTA
1 TTCAGCTCGCATGAGCTTCCCATTA
* *
91569961 TTCAACTCGCATGAGCTTCCCGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
** *
91569986 TTCAGCTCATATGAGCTTCCCGTTA
1 TTCAGCTCGCATGAGCTTCCCATTA
91570011 TT
1 TT
91570013 TAACTCGGAG
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 86 1.00
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.35
Consensus pattern (25 bp):
TTCAGCTCGCATGAGCTTCCCATTA
Found at i:91569970 original size:50 final size:50
Alignment explanation
Indices: 91569886--91570019 Score: 169
Period size: 50 Copynumber: 2.7 Consensus size: 50
91569876 GGTCACCGAT
* * * * *
91569886 TTCAGCTCTTATGAGCTTCCCAATACTCAGCTCGCATAAGCTTCCTGTTA
1 TTCAGCTCATATGAGCTTCCCATTATTCAACTCGCATAAGCTTCCCGTTA
** * *
91569936 TTCAGCTCGCATGAGCTTCCTATTATTCAACTCGCATGAGCTTCCCGTTA
1 TTCAGCTCATATGAGCTTCCCATTATTCAACTCGCATAAGCTTCCCGTTA
* *
91569986 TTCAGCTCATATGAGCTTCCCGTTATTTAACTCG
1 TTCAGCTCATATGAGCTTCCCATTATTCAACTCG
91570020 GAGGAGCTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (50 bp):
TTCAGCTCATATGAGCTTCCCATTATTCAACTCGCATAAGCTTCCCGTTA
Found at i:91570026 original size:25 final size:25
Alignment explanation
Indices: 91569896--91570028 Score: 131
Period size: 25 Copynumber: 5.3 Consensus size: 25
91569886 TTCAGCTCTT
** * *
91569896 ATGAGCTTCCCAATACTCAGCTCGC
1 ATGAGCTTCCCGTTATTCAACTCGC
* * *
91569921 ATAAGCTTCCTGTTATTCAGCTCGC
1 ATGAGCTTCCCGTTATTCAACTCGC
**
91569946 ATGAGCTTCCTATTATTCAACTCGC
1 ATGAGCTTCCCGTTATTCAACTCGC
* **
91569971 ATGAGCTTCCCGTTATTCAGCTCAT
1 ATGAGCTTCCCGTTATTCAACTCGC
* *
91569996 ATGAGCTTCCCGTTATTTAACTCGG
1 ATGAGCTTCCCGTTATTCAACTCGC
*
91570021 AGGAGCTT
1 ATGAGCTT
91570029 AACATTTACA
Statistics
Matches: 90, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 90 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAACTCGC
Found at i:91579510 original size:30 final size:30
Alignment explanation
Indices: 91579435--91579532 Score: 78
Period size: 30 Copynumber: 3.2 Consensus size: 30
91579425 TCGAAGGATT
* *
91579435 TATTATTATTTTTGTTAAATTT--TGTTATAA
1 TATTTTTATTTTTG-TAAATTTAAAGTT-TAA
91579465 TATGTTTAGTATTTTTGTAAATTTAAAGTTTAA
1 TAT-TTT--TATTTTTGTAAATTTAAAGTTTAA
* *
91579498 TATTTTTATTTTT-AAGAATTTAAATTTTAA
1 TATTTTTATTTTTGTA-AATTTAAAGTTTAA
91579528 -ATTTT
1 TATTTT
91579533 AAGCTTAATT
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
29 6 0.10
30 23 0.40
31 2 0.03
32 10 0.17
33 14 0.24
34 3 0.05
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (30 bp):
TATTTTTATTTTTGTAAATTTAAAGTTTAA
Found at i:91579524 original size:22 final size:23
Alignment explanation
Indices: 91579493--91579535 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
91579483 AAATTTAAAG
* *
91579493 TTTAATATTTTTATTTTTAAGAA
1 TTTAATATTTTAAATTTTAAGAA
91579516 TTTAA-ATTTTAAATTTTAAG
1 TTTAATATTTTAAATTTTAAG
91579536 CTTAATTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTTAATATTTTAAATTTTAAGAA
Found at i:91587329 original size:15 final size:15
Alignment explanation
Indices: 91587302--91587343 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
91587292 CGCTTAACAA
91587302 TAAAAATAAATAAAAT
1 TAAAAA-AAATAAAAT
*
91587318 TTAAAAAAATAAAAT
1 TAAAAAAAATAAAAT
91587333 TAATAAAAAAT
1 TAA-AAAAAAT
91587344 TAATTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAAAAATAAAAT
Found at i:91587340 original size:14 final size:15
Alignment explanation
Indices: 91587304--91587343 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
91587294 CTTAACAATA
91587304 AAAATAAATAAAATTT
1 AAAA-AAATAAAATTT
*
91587320 AAAAAAATAAAATTA
1 AAAAAAATAAAATTT
91587335 ATAAAAAAT
1 A-AAAAAAT
91587344 TAATTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
AAAAAAATAAAATTT
Found at i:91587340 original size:16 final size:16
Alignment explanation
Indices: 91587309--91587353 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
91587299 CAATAAAAAT
*
91587309 AAATAAAATTTA-AAA
1 AAATAAAATTAATAAA
91587324 AAATAAAATTAATAAA
1 AAATAAAATTAATAAA
* *
91587340 AAATTAATTTAATA
1 AAATAAAATTAATA
91587354 TTTTTAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAAATTAATAAA
Found at i:91588603 original size:13 final size:13
Alignment explanation
Indices: 91588585--91588611 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91588575 GTTTTGTTAC
91588585 ATGTGATTCATTT
1 ATGTGATTCATTT
91588598 ATGTGATTCATTT
1 ATGTGATTCATTT
91588611 A
1 A
91588612 GTTTTTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
ATGTGATTCATTT
Found at i:91594949 original size:137 final size:133
Alignment explanation
Indices: 91594707--91594970 Score: 483
Period size: 137 Copynumber: 2.0 Consensus size: 133
91594697 CCGCAAAATC
91594707 TACGATTTTTAAAGATTGAAACTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
1 TACGATTTTTAAAGATTGAAACTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
*
91594772 ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAATTAATAAATAAGCAAGGGCG
66 ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAGGGCG
91594837 CCA
131 CCA
91594840 TACGATTTTTAAAGATTGAAACTGAATTCCTTTTATCTTTCTTTCTCAATACTACAGATAGATTC
1 TACGATTTTTAAAGATTGAAACTGAATTCC--TT-T-TTTCTTTCTCAATACTACAGATAGATTC
91594905 TAGAATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAG
62 TAGAATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAG
91594970 G
127 G
91594971 CCATGATGAT
Statistics
Matches: 126, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
133 30 0.24
135 2 0.02
136 1 0.01
137 93 0.74
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (133 bp):
TACGATTTTTAAAGATTGAAACTGAATTCCTTTTTTCTTTCTCAATACTACAGATAGATTCTAGA
ATCAAATGATAAACCTATAGAATCTCAGAGACATACACAGGACAAGTAATAAATAAGCAAGGGCG
CCA
Found at i:91599249 original size:21 final size:21
Alignment explanation
Indices: 91599225--91599267 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
91599215 TTGTATTTTT
91599225 AATTGCAGTAATTAACTTAAA
1 AATTGCAGTAATTAACTTAAA
91599246 AATTGCAGTAATTAACTTAAA
1 AATTGCAGTAATTAACTTAAA
91599267 A
1 A
91599268 TAATACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (21 bp):
AATTGCAGTAATTAACTTAAA
Found at i:91606840 original size:13 final size:13
Alignment explanation
Indices: 91606822--91606848 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91606812 TTAGCATTAC
91606822 TTTTAAAAAGTGT
1 TTTTAAAAAGTGT
91606835 TTTTAAAAAGTGT
1 TTTTAAAAAGTGT
91606848 T
1 T
91606849 GTGGAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TTTTAAAAAGTGT
Found at i:91609954 original size:25 final size:23
Alignment explanation
Indices: 91609917--91610036 Score: 89
Period size: 24 Copynumber: 4.9 Consensus size: 23
91609907 AGCTCTCTCT
91609917 TGAGCCATATAACGGAAAGCTCATG
1 TGAGCCAT-TAACGG-AAGCTCATG
*
91609942 TGAGCCATGTAACGGGAAGCTCCA-A
1 TGAGCCAT-TAAC-GGAAGCT-CATG
*
91609967 AGAGCCATTAACAGGAAGCTCATG
1 TGAGCCATTAAC-GGAAGCTCATG
* * * **
91609991 CGAGCCAATATCAGGAAGCTCCGG
1 TGAGCCATTAAC-GGAAGCTCATG
*
91610015 AGAGCCATTAACGGGAAGCTCA
1 TGAGCCATTAAC-GGAAGCTCA
91610037 CAAAAAACCT
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 47 0.61
25 24 0.31
26 4 0.05
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.16
Consensus pattern (23 bp):
TGAGCCATTAACGGAAGCTCATG
Found at i:91609983 original size:24 final size:24
Alignment explanation
Indices: 91609943--91610070 Score: 105
Period size: 24 Copynumber: 5.2 Consensus size: 24
91609933 AAGCTCATGT
91609943 GAGCCATGTAACGGGAAGCTCCAAA
1 GAGCCAT-TAACGGGAAGCTCCAAA
* **
91609968 GAGCCATTAACAGGAAGCT-CATGC
1 GAGCCATTAACGGGAAGCTCCA-AA
* * * **
91609992 GAGCCAATATCAGGAAGCTCCGGA
1 GAGCCATTAACGGGAAGCTCCAAA
91610016 GAGCCATTAACGGGAAGCTCACAAA
1 GAGCCATTAACGGGAAGCTC-CAAA
* * *
91610041 AAACCTTTAAACGGGAAGCTCACAAA
1 GAGCCATT-AACGGGAAGCTC-CAAA
91610067 GAGC
1 GAGC
91610071 TATATATCGG
Statistics
Matches: 82, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
23 2 0.02
24 46 0.56
25 15 0.18
26 19 0.23
ACGTcount: A:0.38, C:0.24, G:0.25, T:0.13
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCCAAA
Found at i:91610020 original size:48 final size:48
Alignment explanation
Indices: 91609918--91610036 Score: 141
Period size: 48 Copynumber: 2.4 Consensus size: 48
91609908 GCTCTCTCTT
* * *
91609918 GAGCCATATAACGGAAAGCTCATGTGAGCCATGTAACGGGAAGCTCCAAA
1 GAGCCAT-TAACGG-AAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
* **
91609968 GAGCCATTAACAGGAAGCTCATGCGAGCCA-ATATCAGGAAGCTCCGGA
1 GAGCCATTAAC-GGAAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
91610016 GAGCCATTAACGGGAAGCTCA
1 GAGCCATTAAC-GGAAGCTCA
91610037 CAAAAAACCT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
48 33 0.54
49 19 0.31
50 9 0.15
ACGTcount: A:0.34, C:0.24, G:0.27, T:0.15
Consensus pattern (48 bp):
GAGCCATTAACGGAAGCTCATGCGAGCCATATAACAGGAAGCTCCAAA
Found at i:91610081 original size:26 final size:25
Alignment explanation
Indices: 91610015--91610097 Score: 69
Period size: 26 Copynumber: 3.3 Consensus size: 25
91610005 GAAGCTCCGG
* *
91610015 AGAGCCATTAACGGGAAGCTCACAAA
1 AGAGCTATAAACGGGAAGCTCAC-AA
* * *
91610041 AAACCTTTAAACGGGAAGCTCACAA
1 AGAGCTATAAACGGGAAGCTCACAA
* * *
91610066 AGAGCTATATATCGGGACGCTCA-TA
1 AGAGCTATA-AACGGGAAGCTCACAA
91610091 AGAGCTA
1 AGAGCTA
91610098 CGGTGTGTCC
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
25 16 0.36
26 29 0.64
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.17
Consensus pattern (25 bp):
AGAGCTATAAACGGGAAGCTCACAA
Found at i:91612594 original size:50 final size:50
Alignment explanation
Indices: 91612519--91612614 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
91612509 CCATGGCAAC
* *
91612519 AAGTGATAAGTGATAGGTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
91612569 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAA
91612615 ATGACGACTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:91612661 original size:31 final size:31
Alignment explanation
Indices: 91612623--91612769 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
91612613 AAATGACGAC
*
91612623 TGAAAAGTGGTAGCTTTGGTTACCTGATCAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
91612654 TGAAAAGTGGTAGCTTCT-GCTACCTGATCAG
1 TGAAAAGTGGTAGCTT-TGGCTACCTGATCAG
**
91612685 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
* * *
91612716 TGAAAAATGGTAGCTCTGGCTACCTGATTAG
1 TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
*
91612747 TGAATAGTGGTAGCTTTGGCTAC
1 TGAAAAGTGGTAGCTTTGGCTAC
91612770 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
31 104 0.99
32 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTTGGCTACCTGATCAG
Found at i:91612956 original size:49 final size:48
Alignment explanation
Indices: 91612846--91613007 Score: 189
Period size: 49 Copynumber: 3.5 Consensus size: 48
91612836 GCTACTGTAA
* ** *
91612846 AAGACCATATCTGGAATATGGCATC-AT-TGA-GATATGTGATTCGTGC
1 AAGACCATAGCTGGGCTATGGCATCGATAT-ATGATATGTGATTCGTGT
* *
91612892 AAGACCATAGTTGGGCTATGGTATCGATATATGATATGTGATTACGTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATT-CGTGT
91612941 AAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTGT
1 AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATTCGTGT
91612983 AAGACCATAGCTGGGCTATGGCATC
1 AAGACCATAGCTGGGCTATGGCATC
91613008 ATTATGTGAA
Statistics
Matches: 104, Mismatches: 8, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
42 29 0.28
44 1 0.01
45 1 0.01
46 21 0.20
47 3 0.03
48 13 0.12
49 36 0.35
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (48 bp):
AAGACCATAGCTGGGCTATGGCATCGATATATGATATGTGATTCGTGT
Found at i:91612983 original size:42 final size:43
Alignment explanation
Indices: 91612937--91613051 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
91612927 ATGTGATTAC
*
91612937 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
91612979 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* ** **
91613021 GTGTAAAACCATAATTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
91613052 GAAAACGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:91615636 original size:25 final size:25
Alignment explanation
Indices: 91615585--91615636 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
91615575 CAATTTGATC
* ** *
91615585 AAATAAATTATTAAAAAATTTATAA
1 AAATAAAATATTAAAAAATAGAGAA
*
91615610 AAATAAAATATTTAAAAATAGAGAA
1 AAATAAAATATTAAAAAATAGAGAA
91615635 AA
1 AA
91615637 TTGGTTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (25 bp):
AAATAAAATATTAAAAAATAGAGAA
Found at i:91622204 original size:5 final size:6
Alignment explanation
Indices: 91622158--91622211 Score: 63
Period size: 6 Copynumber: 8.2 Consensus size: 6
91622148 CAACCCAATT
91622158 ATAAAA ATTAAAA ATAATTTAA ATAAAA ATAAAA ACTAAAA ATAAAA ATAAAA
1 ATAAAA A-TAAAA ATAA---AA ATAAAA ATAAAA A-TAAAA ATAAAA ATAAAA
91622211 A
1 A
91622212 ACATATAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
6 25 0.58
7 12 0.28
9 6 0.14
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (6 bp):
ATAAAA
Found at i:91622254 original size:18 final size:18
Alignment explanation
Indices: 91622231--91622299 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
91622221 TTTATACAAA
*
91622231 TAATTCGATTAATTTGGG
1 TAATTCGATTAATTTAGG
** *
91622249 TAATTCGGGTAA-TTCGG
1 TAATTCGATTAATTTAGG
* *
91622266 TCAATTCGATTAATTCAGT
1 T-AATTCGATTAATTTAGG
*
91622285 TAATTCGGTTAATTT
1 TAATTCGATTAATTT
91622300 TATACTTATT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
17 5 0.13
18 31 0.79
19 3 0.08
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (18 bp):
TAATTCGATTAATTTAGG
Found at i:91622271 original size:27 final size:27
Alignment explanation
Indices: 91622231--91622299 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
91622221 TTTATACAAA
* * *
91622231 TAATTCGATTAATTTGGGTAATTCGGG
1 TAATTCGGTTAATTTGAGTAATTCAGG
* * * *
91622258 TAATTCGGTCAATTCGATTAATTCAGT
1 TAATTCGGTTAATTTGAGTAATTCAGG
91622285 TAATTCGGTTAATTT
1 TAATTCGGTTAATTT
91622300 TATACTTATT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (27 bp):
TAATTCGGTTAATTTGAGTAATTCAGG
Found at i:91627820 original size:36 final size:36
Alignment explanation
Indices: 91627773--91627841 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
91627763 ATTAGGCTTG
91627773 AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
1 AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
*
91627809 AGATACTAAGAAATTTGATAAAAATTGATTTTT
1 AGATACTAAGAAATTCGATAAAAATTGATTTTT
91627842 GAGTATAGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (36 bp):
AGATACTAAGAAATTCGATAAAAATTGATTTTTTTT
Found at i:91629658 original size:39 final size:39
Alignment explanation
Indices: 91629604--91629697 Score: 152
Period size: 39 Copynumber: 2.4 Consensus size: 39
91629594 TGAGCTTTAG
* *
91629604 CTAGCCTTCGGGCTTCCGTTTAGCACTTGTGTGCTTCAG
1 CTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAA
*
91629643 TTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAA
1 CTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAA
*
91629682 CTAGACTTCGGGCTTC
1 CTAGCCTTCGGGCTTC
91629698 AGATCACGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.13, C:0.28, G:0.23, T:0.36
Consensus pattern (39 bp):
CTAGCCTTCGGGCTTCCGTTTAGCACTTATGTGCTTCAA
Found at i:91629679 original size:21 final size:20
Alignment explanation
Indices: 91629615--91629679 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
91629605 TAGCCTTCGG
91629615 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAGCACTT-TGT
* * *
91629636 GCTTCAG-TTAGC-CTTCGG
1 GCTTCCGTTTAGCACTTTGT
91629654 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTT-TGT
91629675 GCTTC
1 GCTTC
91629680 AACTAGACTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
20 8 0.23
21 12 0.34
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (20 bp):
GCTTCCGTTTAGCACTTTGT
Found at i:91630210 original size:47 final size:47
Alignment explanation
Indices: 91630084--91630248 Score: 124
Period size: 47 Copynumber: 3.6 Consensus size: 47
91630074 GTGCTGGTGC
** * * * *
91630084 AAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCCAATGT
1 AAGACCATGTCTGGGACATGGCATC-AACTTGAGATGTGAGCCAGTGT
* * * * * *
91630130 AAGA-CATGTTTGGGCCAT-GCATCGACTACGAGATGAT-TGTCAGTGT
1 AAGACCATGTCTGGGACATGGCATCAACT-TGAGATG-TGAGCCAGTGT
* *
91630176 AAGACCATGTCTGGGACGTGGTATCAACTTGAGATGTGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATCAACTTGAGATGTGAGCCAGTGT
**
91630223 AAGACTGTGTCTGGGACATGGCATCA
1 AAGACCATGTCTGGGACATGGCATCA
91630249 GCACCTTACC
Statistics
Matches: 95, Mismatches: 19, Indels: 9
0.77 0.15 0.07
Matches are distributed among these distances:
45 3 0.03
46 38 0.40
47 47 0.49
48 7 0.07
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AAGACCATGTCTGGGACATGGCATCAACTTGAGATGTGAGCCAGTGT
Found at i:91631803 original size:48 final size:48
Alignment explanation
Indices: 91631751--91631921 Score: 161
Period size: 48 Copynumber: 3.5 Consensus size: 48
91631741 GTTGTGAGAA
* ***
91631751 CTAGTGTAAGACCATGTCTGGGATATGGCATCGGTA-TTGA-TATGTGCG
1 CTAGTGTAA-ACCATGTCTGGGACATGGCATCGG-ACCACATTATGTGCG
* * *
91631799 CTAGTGTATAACCATGTCTGGGACATAGCAT-AGACCACATTATGTGTG
1 CTAGTGTA-AACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
* *
91631847 CTAGTGTAAAACCATGTCTGGGACATGGCATCGG-CCACATTATGAGAG
1 CTAGTGT-AAACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
* * *
91631895 CTAGTATAAGACCATATCTAGGACATG
1 CTAGTGTAA-ACCATGTCTGGGACATG
91631922 TTATCGGCAT
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
46 1 0.01
47 4 0.04
48 95 0.92
49 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
CTAGTGTAAACCATGTCTGGGACATGGCATCGGACCACATTATGTGCG
Found at i:91633928 original size:31 final size:31
Alignment explanation
Indices: 91633890--91633950 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
91633880 GCCGAAAGCT
91633890 TTTCATAAATCATATCACTGAGCTGAAGCCA
1 TTTCATAAATCATATCACTGAGCTGAAGCCA
* *
91633921 TTTCATAAATCATATCATTGGGCTGAAGCC
1 TTTCATAAATCATATCACTGAGCTGAAGCC
91633951 TTTACTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (31 bp):
TTTCATAAATCATATCACTGAGCTGAAGCCA
Found at i:91634242 original size:26 final size:26
Alignment explanation
Indices: 91634171--91634293 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
91634161 CCTCTTTAAT
**
91634171 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
91634196 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* **
91634221 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
91634247 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
91634273 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
91634294 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 32 0.36
26 56 0.64
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:91634282 original size:52 final size:51
Alignment explanation
Indices: 91634171--91634293 Score: 221
Period size: 52 Copynumber: 2.4 Consensus size: 51
91634161 CCTCTTTAAT
*
91634171 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
91634221 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
91634273 AACTAGGGCATAAGCCCTTTT
1 AACTAGGGCATAAGCCCTTTT
91634294 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
50 9 0.13
51 25 0.36
52 36 0.51
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (51 bp):
AACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCAAAGCCCTTTTCAATA
Found at i:91635196 original size:27 final size:27
Alignment explanation
Indices: 91635101--91635179 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
91635091 TATTCGTTAT
* *
91635101 TTTACCATACAGGGG-TATTACAGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCAC
*
91635128 TTTACCCTTCAGGGGCTTTACGGTCAC
1 TTTACCCTACAGGGGCTTTACGGTCAC
91635155 TTTACCCTACAGGGGCTTTACGGTC
1 TTTACCCTACAGGGGCTTTACGGTC
91635180 TTTTTACCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCAC
Found at i:91635271 original size:27 final size:27
Alignment explanation
Indices: 91635226--91635577 Score: 221
Period size: 27 Copynumber: 13.0 Consensus size: 27
91635216 TACAATGGTG
* * * *
91635226 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
* * * *
91635253 TTTTAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
*** * *
91635280 TTTCCATAATTTTTAGAAAGTCAAAGGTA
1 TTTTGGTAA-TTTTATAAA-TCAAGGGTA
* * *
91635309 TTTCT-GTAACTTTGTAAATCATGGGTA
1 TTT-TGGTAATTTTATAAATCAAGGGTA
* **
91635336 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
* * * *
91635363 TTTCGGTAATTTCACAAA-CCAGTGGTA
1 TTTTGGTAATTTTATAAATCAAG-GGTA
* *
91635390 TTTTGGTAATTTTACAAA-CTAGGGATA
1 TTTTGGTAATTTTATAAATCAAGGG-TA
* * *
91635417 TTTTGGGAATTTTACAAATTGAA-GGTA
1 TTTTGGTAATTTTATAAA-TCAAGGGTA
* *
91635444 TTTCGGTAATTTTATAAACCAAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
* * * * *
91635471 TTTTAGCAATTTTACAGA-CTAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
* *
91635497 TTTTGGTAATTTTACT-GATCGAGGGTA
1 TTTTGGTAATTTTA-TAAATCAAGGGTA
* *
91635524 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
* * *
91635551 TTTTAGTAATTTTGTAAATCGAGGGTA
1 TTTTGGTAATTTTATAAATCAAGGGTA
91635578 AAATAGTAAT
Statistics
Matches: 255, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
26 29 0.11
27 197 0.77
28 15 0.06
29 14 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TTTTGGTAATTTTATAAATCAAGGGTA
Found at i:91635391 original size:54 final size:53
Alignment explanation
Indices: 91635331--91635577 Score: 244
Period size: 54 Copynumber: 4.6 Consensus size: 53
91635321 TGTAAATCAT
* * *
91635331 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
* * **
91635384 GTGGTATTTTGGTAATTTTACAAA-CTAGGGATATTTTGGGAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAATCGAGGG-TATTTTGGTAATTTTACAAA-CCA
* * * * * * * * *
91635439 AGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
** **
91635492 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC-A
* **
91635546 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
91635578 AAATAGTAAT
Statistics
Matches: 155, Mismatches: 34, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
53 45 0.29
54 104 0.67
55 6 0.04
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:91635430 original size:81 final size:80
Alignment explanation
Indices: 91635331--91635563 Score: 333
Period size: 81 Copynumber: 2.9 Consensus size: 80
91635321 TGTAAATCAT
* * *
91635331 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAG-GGTATTTTA
91635395 GTAATTTTACAAACTA
65 GTAATTTTACAAACTA
* *
91635411 GGGATATTTTGGGAATTTTACAAATTGAAGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTA
1 GGG-TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTA
* *
91635476 GCAATTTTACAGACTA
65 GTAATTTTACAAACTA
** * * *
91635492 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTAG
91635557 TAATTTT
66 TAATTTT
91635564 GTAAATCGAG
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
80 64 0.47
81 70 0.51
82 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTATAAACCAAGGGTATTTTAG
TAATTTTACAAACTA
Found at i:91635584 original size:27 final size:27
Alignment explanation
Indices: 91635554--91635711 Score: 210
Period size: 27 Copynumber: 5.9 Consensus size: 27
91635544 AAGGGTATTT
*
91635554 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
91635581 TAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91635608 TAGTAATTCTGTAAATTAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* **
91635635 TAGTAATTCTATAAATTAAGGGT-AAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
**
91635661 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
91635688 CGGTAATTCTATAAATCGAGGGTA
1 TAGTAATTCTGTAAATCGAGGGTA
91635712 CTTTGGAAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
26 21 0.17
27 99 0.82
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:91635587 original size:54 final size:53
Alignment explanation
Indices: 91635529--91635711 Score: 204
Period size: 54 Copynumber: 3.4 Consensus size: 53
91635519 GGGTATTTTG
* * ** *
91635529 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTA-AATAGTAATTCTGTAAATCGAGGGTAAAATA
* **
91635583 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATTAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGT-AAATAGTAATTCTGTAAATCGAGGGTAAAATA
* * ** **
91635637 GTAATTCTATAAATTAAGGGTAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCGAGGGTAAAATA
* *
91635690 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCAAGGGTA
91635712 CTTTGGAAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 46 0.42
54 62 0.57
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (53 bp):
GTAATTCTGTAAATCAAGGGTAAATAGTAATTCTGTAAATCGAGGGTAAAATA
Found at i:91635710 original size:53 final size:53
Alignment explanation
Indices: 91635555--91635711 Score: 215
Period size: 53 Copynumber: 2.9 Consensus size: 53
91635545 AGGGTATTTT
* * *
91635555 AGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGT-AAAC
** **
91635609 AGTAATTCTGTAAATTAAGGGTAAAATAGTAATTCTATAAATTAAGGGTAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAC
* **
91635662 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTA
91635712 CTTTGGAAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 46 0.52
54 43 0.48
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (53 bp):
AGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAC
Found at i:91637654 original size:131 final size:130
Alignment explanation
Indices: 91637549--91638146 Score: 812
Period size: 131 Copynumber: 4.6 Consensus size: 130
91637539 CTCATGCCTT
91637549 TTAAAAATCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
* *
91637614 GCTAGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTT
91637679 A
130 A
* *
91637680 TTAAAAACCTTCCAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAACCTT-TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
* * *
91637745 GCTGGGTTGTGATTTCTCATTTGTTCAAAACAACTGAATATTCCTTTAGGTTTTCATTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTT
91637810 A
130 A
91637811 TTAAAAA-CTTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
* *
91637875 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATAATCCTTTAGGTTTTCATTCGTGTT
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTT
91637940 TA
129 TA
* * *
91637942 TTAAAAA-CTTTCGAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAATCGTGCCCTAACG
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
* * * * * ** **
91638006 TGTTGAGTTGTGATTTCTCGTTT-TTCAAAACAATCGAAGATTCC-TTCGAAATTTCACTCACGT
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAG-GTTTTCACTCGTGT
91638069 TT-
128 TTA
* * * * *
91638071 TCTAAAAACCCTTTAAAACGAAGGCGATATTCGATGTTTGACAATTCGGGAAAT-AGTACCCTAT
1 T-TAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAG-AATCA-TGCCCTAT
*
91638135 CGTGTTGGGTTG
62 CGTGCTGGGTTG
91638147 CAATTTCCCA
Statistics
Matches: 424, Mismatches: 34, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
129 4 0.01
130 75 0.18
131 341 0.80
132 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (130 bp):
TTAAAAACCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTG
CTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTTA
Found at i:91638135 original size:262 final size:259
Alignment explanation
Indices: 91637474--91638146 Score: 886
Period size: 262 Copynumber: 2.6 Consensus size: 259
91637464 CGAAATAGTA
** * * * * *
91637474 CCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCTCTTTAAAATTCCA
1 CCCTAACGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATAT-TCCTTAAAATTTCA
*
91637539 CTCATGCCTTTTAAAAATCCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCAT
65 CTCATG-TTTTTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCAT
* *
91637604 GCCCTATCGTGCTAGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTC
128 GCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATAATCCTTTAGGTTTTC
*
91637669 ACTCGTGTTTATTAAAAACCTTCCAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCA
193 ACTCGTGTTTATTAAAAACCTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCA
91637734 TG
258 TG
* * * ***
91637736 CCCTATCGTGCTGGGTTGTGATTTCTCATTTGTTCAAAACAA-CTGAATATTCCTTTAGGTTTTC
1 CCCTAACGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACAATC-GAATATTCC-TTAAAATTTC
* *
91637800 ATTCGTGTTTATTAAAAA-CTTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATC
64 ACTCATGTTT-TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATC
*
91637864 ATGCCCTATCGTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACCGAATAATCCTTTAGGTTT
126 ATGCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATAATCCTTTAGGTTT
* * * *
91637929 TCATTCGTGTTTATTAAAAACTTTCGAAAACGAAGGCAATACTCGATGTTTGATAATTCGGGAAT
191 TCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAAT
*
91637994 CGTG
256 CATG
* * *
91637998 CCCTAACGTGTTGAGTTGTGATTTCTCGTTT-TTCAAAACAATCGAAGATTCCTTCGAAATTTCA
1 CCCTAACGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTT-AAAATTTCA
* * * * *
91638062 CTCACGTTTTCTAAAAACCCTTTAAAACGAAGGCGATATTCGATGTTTGACAATTCGGGAAAT-A
65 CTCATGTTTT-TAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAG-AATCA
* *
91638126 GTACCCTATCGTGTTGGGTTG
127 -TGCCCTATCGTGCTGGGTTG
91638147 CAATTTCCCA
Statistics
Matches: 356, Mismatches: 43, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
260 7 0.02
261 73 0.21
262 272 0.76
263 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (259 bp):
CCCTAACGTGTTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTAAAATTTCAC
TCATGTTTTTAAAAACCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCC
CTATCGTGCTGGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATAATCCTTTAGGTTTTCACT
CGTGTTTATTAAAAACCTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATG
Found at i:91645303 original size:41 final size:41
Alignment explanation
Indices: 91645198--91645280 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
91645188 CATTTCATTC
91645198 ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
1 ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
91645239 ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
1 ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
91645280 A
1 A
91645281 AACATTTTTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.30, C:0.17, G:0.10, T:0.43
Consensus pattern (41 bp):
ATAACCATACAAATGATTACTTTCGGATTCTTTTATTCTTG
Found at i:91649792 original size:44 final size:44
Alignment explanation
Indices: 91649729--91649913 Score: 280
Period size: 44 Copynumber: 4.2 Consensus size: 44
91649719 ACAAATCCCA
* * *
91649729 CAGATTTGGCGTCTTTGTATTGGCGGAGAGTAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
*
91649773 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* * * *
91649817 AAGATTTGGGGTCTCTGTATTGTCAGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
* *
91649861 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
91649905 CAGATTTGG
1 CAGATTTGG
91649914 ATAACAGATT
Statistics
Matches: 128, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 128 1.00
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAG
Found at i:91649918 original size:13 final size:13
Alignment explanation
Indices: 91649900--91649926 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91649890 GCAGATCAAA
91649900 GATAACAGATTTG
1 GATAACAGATTTG
91649913 GATAACAGATTTG
1 GATAACAGATTTG
91649926 G
1 G
91649927 CGTCTCCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (13 bp):
GATAACAGATTTG
Found at i:91649953 original size:57 final size:57
Alignment explanation
Indices: 91649856--91649969 Score: 165
Period size: 57 Copynumber: 2.0 Consensus size: 57
91649846 GCAGATCGAA
* **
91649856 GATAGCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTG
1 GATAACAGATTTGGCGTCTCCATATTGGCAGAGAGCAGATCAAAGATAACAGATTTG
* * * *
91649913 GATAACAGATTTGGCGTCTCCATATTGGCGGAGAGTAGATCGAAGATAGCAGATTTG
1 GATAACAGATTTGGCGTCTCCATATTGGCAGAGAGCAGATCAAAGATAACAGATTTG
91649970 ACATCTCTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (57 bp):
GATAACAGATTTGGCGTCTCCATATTGGCAGAGAGCAGATCAAAGATAACAGATTTG
Found at i:91649968 original size:44 final size:44
Alignment explanation
Indices: 91649913--91650110 Score: 203
Period size: 44 Copynumber: 4.7 Consensus size: 44
91649903 AACAGATTTG
* * **
91649913 GATAACAGATTTGGCGTCTCCATATTGGCGGAGAGTAGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAA
* ** **
91649957 GATAGCAGATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAA
*
91650001 GACAGCAGATTTGGCATCTCTGTATTGGC-------AGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAA
* * ** **
91650038 GATAGCAAATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAA
1 GATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAA
91650082 GATAGCAGATTTGGCATCTCTGTATTGGC
1 GATAGCAGATTTGGCATCTCTGTATTGGC
91650111 AGGGAGCATA
Statistics
Matches: 119, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
37 30 0.25
44 89 0.75
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (44 bp):
GATAGCAGATTTGGCATCTCTGTATTGGCGGAGAGTAGATCGAA
Found at i:91650050 original size:37 final size:37
Alignment explanation
Indices: 91649993--91650112 Score: 132
Period size: 37 Copynumber: 3.1 Consensus size: 37
91649983 GATGGAGAGT
*
91649993 AGATCGAAGACAGCAGATTTGGCATCTCTGTATTGGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
* * * *
91650030 AGATCGAAGATAGCAAATTTGACATCTCTGTAGCGATGGAGAGT
1 AGATCGAAGATAGCAGATTTGGCATCTCTGT----AT--TG-GC
91650074 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
1 AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
91650111 AG
1 AG
91650113 GGAGCATATC
Statistics
Matches: 67, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
37 31 0.46
38 1 0.01
40 2 0.03
41 2 0.03
43 1 0.01
44 30 0.45
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (37 bp):
AGATCGAAGATAGCAGATTTGGCATCTCTGTATTGGC
Found at i:91650089 original size:81 final size:81
Alignment explanation
Indices: 91649949--91650112 Score: 310
Period size: 81 Copynumber: 2.0 Consensus size: 81
91649939 GGCGGAGAGT
*
91649949 AGATCGAAGATAGCAGATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAAGACAGCAGATTTG
1 AGATCGAAGATAGCAAATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAAGACAGCAGATTTG
91650014 GCATCTCTGTATTGGC
66 GCATCTCTGTATTGGC
*
91650030 AGATCGAAGATAGCAAATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAAGATAGCAGATTTG
1 AGATCGAAGATAGCAAATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAAGACAGCAGATTTG
91650095 GCATCTCTGTATTGGC
66 GCATCTCTGTATTGGC
91650111 AG
1 AG
91650113 GGAGCATATC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (81 bp):
AGATCGAAGATAGCAAATTTGACATCTCTGTAGCGATGGAGAGTAGATCGAAGACAGCAGATTTG
GCATCTCTGTATTGGC
Found at i:91653247 original size:131 final size:129
Alignment explanation
Indices: 91653154--91653884 Score: 916
Period size: 131 Copynumber: 5.6 Consensus size: 129
91653144 CTCATGTCTT
*
91653154 TTAAAAATCCTTTAAAACAAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
*
91653219 GCTGGGTTGTGACTTCTCGTTTGTTCAAAACAACCGAATATTCCTTTAGGTTTTCACTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTTTAGGTTTTCACTCGTGTTT
91653284 A
129 A
* *
91653285 TTAAAAACCTTCCAAAACGAAGGCAATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGT
1 TTAAAAACCTT-TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGT
* * * *
91653350 GATGGGTTGTGATTTCTCGTTTATTCAAAACAACTGAATATTCATTTAGGTTTTCATTCGTGTTT
65 GCTGGGTTGTGATTTCTCGTTTGTTCAAAACAAC-GAATATTCCTTTAGGTTTTCACTCGTGTTT
91653415 A
129 A
* *
91653416 TTAAAAA-CTTTCCAAAACGAAGGTAATACTCAATGTTTGA-AAGTTCGAGAATCATGCCCTATC
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAA-TTCGAGAATCATGCCCTATC
* * * *
91653479 GTGCTGAGTTGTGATTTTTCGTTTGTTCAAAACAACCAAATATTCCTTTAGGTTTTCATTCGTGT
63 GTGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTTTAGGTTTTCACTCGTGT
91653544 TTA
127 TTA
* *
91653547 TTAAAAA-CTTTCCAAAACGAAGGCAATACTCGATGTTTGATAATTTGAGAATCATGCCCAATCG
1 TTAAAAACCTTT--AAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
91653611 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAACTGAATATTCCTTTAGGTTTTCACTCGTGTT
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAAC-GAATATTCCTTTAGGTTTTCACTCGTGTT
91653676 TA
128 TA
* * * * *
91653678 TTAAAAACCTTCCAAAAACGAAGACAATACTCGGTGTTTGATAATTCGAGAATCGTGCCCTAACG
1 TTAAAAACCTT--TAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCG
* * * * ** * *
91653743 TGTTGGGTTGTGATTTCTCGTTTTTTCAAAACAATCGAAGATTCCTTCGAAATTTCTCTCACGT-
64 TGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAA-CGAATATTCCTT-TAGGTTT-TCACTCGTG
91653807 TTT-
126 TTTA
* * * * ** * *
91653810 CTAAAAACCCTTTAAAACGAATGCGATATTCGATGTTTGGCAATTCGGGAAAT-AGTACCCTATC
1 TTAAAAA-CCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAG-AATCA-TGCCCTATC
91653874 GTGCTGGGTTG
63 GTGCTGGGTTG
91653885 CAATTTCCCA
Statistics
Matches: 528, Mismatches: 55, Indels: 33
0.86 0.09 0.05
Matches are distributed among these distances:
130 11 0.02
131 380 0.72
132 119 0.23
133 12 0.02
134 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (129 bp):
TTAAAAACCTTTAAAACGAAGGCAATACTCGATGTTTGATAATTCGAGAATCATGCCCTATCGTG
CTGGGTTGTGATTTCTCGTTTGTTCAAAACAACGAATATTCCTTTAGGTTTTCACTCGTGTTTA
Found at i:91665012 original size:48 final size:48
Alignment explanation
Indices: 91664940--91665225 Score: 263
Period size: 48 Copynumber: 6.0 Consensus size: 48
91664930 GCCATTTGGG
* *
91664940 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * **
91664988 CGATATGAGGGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
91665036 TGTTGTGAGAACCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * *
91665083 TTGATATGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGG-CA
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * * *
91665131 TTGAGACGAGAGCTAGTATAAGACCATGTCTAGGATATGGCATCAGCC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * * *
91665179 TCGACATGTGAACCAGTGTAAGACCATGTTTGGAACATGACATCGGC
1 T-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
91665226 AATTCAGCCT
Statistics
Matches: 190, Mismatches: 45, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
47 2 0.01
48 187 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:91665121 original size:96 final size:96
Alignment explanation
Indices: 91664950--91665226 Score: 319
Period size: 96 Copynumber: 2.9 Consensus size: 96
91664940 TGATATGTGT
* * *
91664950 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGGGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATCGATATGTGAGCCAGTGTAAGACCAT
* *
91665014 GTTTGGAACATGGCATCGGTGATGTTGTGA-GA-A
65 GTTTGGAACATGGCATCGG-CA--TTGAGACGAGA
* * * *
91665047 -CCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGTGCTAGTGTAAAACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATG
* *
91665111 TCTGGGACATGGCATCGGCATTGAGACGAGA
66 TTTGGAACATGGCATCGGCATTGAGACGAGA
* * * * * * *
91665142 GCTAGTATAAGACCATGTCTAGGATATGGCATCAGCCTCGACATGTGAACCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATG
*
91665207 TTTGGAACATGACATCGGCA
66 TTTGGAACATGGCATCGGCA
91665227 ATTCAGCCTC
Statistics
Matches: 152, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
93 5 0.03
94 2 0.01
95 4 0.03
96 141 0.93
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATCGATATGTGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCGGCATTGAGACGAGA
Found at i:91665200 original size:144 final size:143
Alignment explanation
Indices: 91664940--91665226 Score: 341
Period size: 144 Copynumber: 2.0 Consensus size: 143
91664930 GCCATTTGGG
* * * * *
91664940 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGGGCCAGTG
1 TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACGAGACGAGAGCCAGTA
* * **
91665005 TAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAACCAGTGTAAGACCATGTCTAGG-
66 TAAGACCATGTTAGGAACATGGCATCGCTGATCATGT-AGAACCAGTGTAAGACCATGT-TAGGA
*
91665069 ACATGGCATCGGCAT
129 ACATGACATCGGCAT
* * *
91665084 TGATATGTGTGCTAGTGTAAAACCATGTCTGGGACATGGCATCGG-CATTGAGACGAGAGCTAGT
1 TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCA-CGAGACGAGAGCCAGT
* *
91665148 ATAAGACCATGTCTAGG-ATATGGCATCAGCCTCGA-CATGT-GAACCAGTGTAAGACCATGTTT
65 ATAAGACCATGT-TAGGAACATGGCATC-G-CT-GATCATGTAGAACCAGTGTAAGACCATGTTA
91665210 GGAACATGACATCGGCA
126 GGAACATGACATCGGCA
91665227 ATTCAGCCTC
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
143 5 0.04
144 107 0.88
145 4 0.03
146 4 0.03
147 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (143 bp):
TGATATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCACGAGACGAGAGCCAGTA
TAAGACCATGTTAGGAACATGGCATCGCTGATCATGTAGAACCAGTGTAAGACCATGTTAGGAAC
ATGACATCGGCAT
Found at i:91665818 original size:28 final size:28
Alignment explanation
Indices: 91665786--91665844 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
91665776 CAAGTCGATT
91665786 GATATTCACCCAACATAGCGATGAAATC
1 GATATTCACCCAACATAGCGATGAAATC
91665814 GATATTCACCCAACATAGCGATGAAATC
1 GATATTCACCCAACATAGCGATGAAATC
91665842 GAT
1 GAT
91665845 GACTAAACGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (28 bp):
GATATTCACCCAACATAGCGATGAAATC
Found at i:91666279 original size:15 final size:15
Alignment explanation
Indices: 91666259--91666287 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
91666249 ACGCATAATA
91666259 ATACTAAATATATAC
1 ATACTAAATATATAC
91666274 ATACTAAATATATA
1 ATACTAAATATATA
91666288 TACATAGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
ATACTAAATATATAC
Found at i:91666383 original size:32 final size:32
Alignment explanation
Indices: 91666342--91666405 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
91666332 ATAACATAGA
91666342 AAATATATTTATATACTAATAATAATAATAAT
1 AAATATATTTATATACTAATAATAATAATAAT
91666374 AAATATATTTATATACTAATAATAATAATAAT
1 AAATATATTTATATACTAATAATAATAATAAT
91666406 GAAAAGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTATATACTAATAATAATAATAAT
Found at i:91666991 original size:22 final size:23
Alignment explanation
Indices: 91666965--91667015 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
91666955 ATATATAAAA
91666965 TAATATGGTAA-AAAAATAATAG
1 TAATATGGTAAGAAAAATAATAG
* *
91666987 TAATATGTTAATGAAAAATAATGG
1 TAATATGGTAA-GAAAAATAATAG
91667011 TAATA
1 TAATA
91667016 AAAATATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
24 15 0.60
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (23 bp):
TAATATGGTAAGAAAAATAATAG
Found at i:91667674 original size:18 final size:18
Alignment explanation
Indices: 91667631--91667682 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
91667621 GATAAATAGT
91667631 AATAATAACAATAATATA
1 AATAATAACAATAATATA
* * *
91667649 AATGATAAC-ATACATGTG
1 AATAATAACAATA-ATATA
*
91667667 AATAATAATAATAATA
1 AATAATAACAATAATA
91667683 GCAATAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
AATAATAACAATAATATA
Found at i:91668828 original size:20 final size:20
Alignment explanation
Indices: 91668803--91668841 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
91668793 AAAATTTTGG
*
91668803 GTTTAATTTGTTGGGTTTTA
1 GTTTAATGTGTTGGGTTTTA
91668823 GTTTAATGTGTTGGGTTTT
1 GTTTAATGTGTTGGGTTTT
91668842 GGGGTTTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.00, G:0.28, T:0.59
Consensus pattern (20 bp):
GTTTAATGTGTTGGGTTTTA
Found at i:91668860 original size:22 final size:22
Alignment explanation
Indices: 91668835--91668881 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
91668825 TTAATGTGTT
* * *
91668835 GGGTTTTGGGGTTTAGTATGAA
1 GGGTTTTGGAGTTTAATATAAA
91668857 GGGTTTTGGAGTTTAATATAAA
1 GGGTTTTGGAGTTTAATATAAA
91668879 GGG
1 GGG
91668882 GCCAAAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.38, T:0.38
Consensus pattern (22 bp):
GGGTTTTGGAGTTTAATATAAA
Found at i:91673339 original size:48 final size:47
Alignment explanation
Indices: 91673241--91673341 Score: 123
Period size: 48 Copynumber: 2.1 Consensus size: 47
91673231 GAGATGTAAT
* * *
91673241 TATGTGCTCCTGTATAAGACCATATCTAGGATATGACATCGGTGATA
1 TATGTGCTCATGTATAAGACCATATCTAGGATATGACACCAGTGATA
* * *
91673288 TATGTGCTCATGTGTAAATACCATATCTAGGATATGGCACCAGT-ATGA
1 TATGTGCTCATGTAT-AAGACCATATCTAGGATATGACACCAGTGAT-A
91673336 TATGTG
1 TATGTG
91673342 ATACCTGTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 15 0.33
48 31 0.67
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (47 bp):
TATGTGCTCATGTATAAGACCATATCTAGGATATGACACCAGTGATA
Found at i:91674940 original size:27 final size:25
Alignment explanation
Indices: 91674874--91674941 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
91674864 AATTATAAGG
91674874 AAAAAGAAT-AAAATATAAAAAAAT
1 AAAAAGAATAAAAATATAAAAAAAT
*
91674898 AAAAAGAGA-AATAATATAAAAGAAA-
1 AAAAAGA-ATAAAAATATAAAA-AAAT
91674923 ATAAAAGAATTAAAAATAT
1 A-AAAAGAA-TAAAAATAT
91674942 TTTTTAAGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
24 7 0.19
25 13 0.36
26 9 0.25
27 7 0.19
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (25 bp):
AAAAAGAATAAAAATATAAAAAAAT
Found at i:91675246 original size:23 final size:23
Alignment explanation
Indices: 91675220--91675267 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
91675210 AAAGAAGGTA
91675220 TAGTTTAGGTTAAAGTGAAAATG
1 TAGTTTAGGTTAAAGTGAAAATG
*
91675243 TAGTTTAGGTTTAAGTGAAAATG
1 TAGTTTAGGTTAAAGTGAAAATG
91675266 TA
1 TA
91675268 TTCATTGTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (23 bp):
TAGTTTAGGTTAAAGTGAAAATG
Found at i:91679379 original size:18 final size:18
Alignment explanation
Indices: 91679356--91679392 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
91679346 TATAAAGAAG
91679356 AAAAATATGCATATATAT
1 AAAAATATGCATATATAT
*
91679374 AAAAATATGTATATATAT
1 AAAAATATGCATATATAT
91679392 A
1 A
91679393 TAGGTGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (18 bp):
AAAAATATGCATATATAT
Found at i:91679655 original size:36 final size:36
Alignment explanation
Indices: 91679615--91679694 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
91679605 ATACATATAA
* *
91679615 ATATATATACT-TATAAAAATAAAAAT-ATGTATATGT
1 ATATATATA-TATATAAAAAGAAAAATGA-GTATACGT
* *
91679651 ATATAGATATATATAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAGAAAAATGAGTATACGT
91679687 ATATATAT
1 ATATATAT
91679695 TAAACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.36
Consensus pattern (36 bp):
ATATATATATATATAAAAAGAAAAATGAGTATACGT
Found at i:91679836 original size:3 final size:3
Alignment explanation
Indices: 91679825--91679888 Score: 85
Period size: 3 Copynumber: 21.3 Consensus size: 3
91679815 CAATAATACC
* * *
91679825 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
91679870 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
91679889 GCAAAAGTAC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 1 0.02
3 52 0.98
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:91694876 original size:124 final size:124
Alignment explanation
Indices: 91694650--91695022 Score: 602
Period size: 124 Copynumber: 3.0 Consensus size: 124
91694640 CAAACATGCT
91694650 ACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGTATCCTGCT
1 ACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTT-ACAAATTCTTCTCAAATAGTATCCTGCT
91694715 AGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAAATTATTTCTTCCATGATCG
65 AGAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAAATTATTTCTTCCATGATCG
* * * *
91694775 ACTGCAGCAAAAGCGTGTGCACGAGGGCACGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
1 ACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGTATCCTGCTA
* * * *
91694840 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTTATTTCTTCCATGACCT
66 GAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAAATTATTTCTTCCATGATCG
* *
91694899 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGTATCCTGCTA
1 ACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGTATCCTGCTA
* ** *
91694964 GAAGCGATTTTATACTATTTGATCAAAAACGTCAACTCAAAATTATTTCTTCCAGGATC
66 GAAGCGATTTTATACTATTTGCTCAAAAACGTCAA-AAAAAATTATTTCTTCCATGATC
91695023 TAAAAACCCT
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
124 175 0.77
125 51 0.23
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGTGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGTATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAAAAACGTCAAAAAAAATTATTTCTTCCATGATCG
Found at i:91695476 original size:20 final size:20
Alignment explanation
Indices: 91695418--91695478 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
91695408 AAAATGATAA
** *
91695418 AATCAAGTTAAAAAAGTTTC
1 AATCAAGTTAAAACTGTTTT
**
91695438 AATTGAGTT-AAACAT-TTTT
1 AATCAAGTTAAAAC-TGTTTT
91695457 AATCAAGTTAAAACTGTTTT
1 AATCAAGTTAAAACTGTTTT
91695477 AA
1 AA
91695479 AACAAGTCAA
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (20 bp):
AATCAAGTTAAAACTGTTTT
Found at i:91696124 original size:37 final size:39
Alignment explanation
Indices: 91696083--91696156 Score: 116
Period size: 38 Copynumber: 1.9 Consensus size: 39
91696073 GAGGGTTGAG
91696083 TCTTAAG-GTTTGGGTAGAAACCTTAAGGGAG-TTGTGA
1 TCTTAAGAGTTTGGGTAGAAACCTTAAGGGAGATTGTGA
* *
91696120 TCTTAAGATTTTGGGTAGAAATCTTAAGGGAGATTGT
1 TCTTAAGAGTTTGGGTAGAAACCTTAAGGGAGATTGT
91696157 AAGGTTAAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 7 0.21
38 22 0.67
39 4 0.12
ACGTcount: A:0.28, C:0.07, G:0.30, T:0.35
Consensus pattern (39 bp):
TCTTAAGAGTTTGGGTAGAAACCTTAAGGGAGATTGTGA
Found at i:91700258 original size:27 final size:26
Alignment explanation
Indices: 91700190--91700295 Score: 72
Period size: 26 Copynumber: 4.1 Consensus size: 26
91700180 TCCCAGCGGA
* *
91700190 TATCCCAGTTTAGTGTCCTG-C-AGAC
1 TATCCCATTTTAATGTCCTGTCGA-AC
** *
91700215 TATCCTGTATTAATGTCCTGTCGAAC
1 TATCCCATTTTAATGTCCTGTCGAAC
* ** **
91700241 TATCCTATCTTTAATGTCCCATCGGTC
1 TATCCCAT-TTTAATGTCCTGTCGAAC
* *
91700268 TCTCCCATTTTAATGTCCTGTCAAAC
1 TATCCCATTTTAATGTCCTGTCGAAC
91700294 TA
1 TA
91700296 ACTATGATGT
Statistics
Matches: 59, Mismatches: 19, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
25 15 0.25
26 24 0.41
27 20 0.34
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (26 bp):
TATCCCATTTTAATGTCCTGTCGAAC
Found at i:91702579 original size:98 final size:102
Alignment explanation
Indices: 91702403--91702602 Score: 234
Period size: 98 Copynumber: 2.0 Consensus size: 102
91702393 GGTTCACACA
*
91702403 GGCAAGGACATGGATGTGTGTCCAGGCCGTGTACTCACTGTTTATGATTTAGGACCACACAGCCA
1 GGCAAGGACATGGATGTGTGTCCAGGCCATGTACTCACTGTTTATGATTTAGGACCACACAGCCA
*
91702468 GGACATGGGGTGTG-CT-C-AGGCCGTGTGAGCCACG
66 GGACATGGAGTGTGTCTCCTAGGCCGTGTGAGCCACG
* * **
91702502 GGCAA-GACATGGACT-TG-GTCCAGGCTATGTAACTCACTGTTTATGATTTAGGACTACATGGC
1 GGCAAGGACATGGA-TGTGTGTCCAGGCCATGT-ACTCACTGTTTATGATTTAGGACCACACAGC
* * *
91702564 TAGAGGCAT-GAGTGTGTGTGCCTAGGCCGTGTGAGCCAC
64 CAG-GACATGGAGTGTGTCT-CCTAGGCCGTGTGAGCCAC
91702603 ACGGACAAGG
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
97 11 0.13
98 46 0.54
99 11 0.13
101 1 0.01
102 16 0.19
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.24
Consensus pattern (102 bp):
GGCAAGGACATGGATGTGTGTCCAGGCCATGTACTCACTGTTTATGATTTAGGACCACACAGCCA
GGACATGGAGTGTGTCTCCTAGGCCGTGTGAGCCACG
Found at i:91702681 original size:42 final size:42
Alignment explanation
Indices: 91702579--91702673 Score: 136
Period size: 42 Copynumber: 2.3 Consensus size: 42
91702569 GCATGAGTGT
*
91702579 GTGTGCCTAGGCCGTGTGAGCCACACGGACAAGGATATGGGC
1 GTGTGCCTAGGCCGTGTGAGCCACACGGACAAGGACATGGGC
* * * *
91702621 GTGCGCCTAGCCCGTGTGAGCCATACGGGCAAGGACATGGGC
1 GTGTGCCTAGGCCGTGTGAGCCACACGGACAAGGACATGGGC
*
91702663 GTGTGTCTAGG
1 GTGTGCCTAGG
91702674 TCTTGTGACT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.19, C:0.24, G:0.39, T:0.18
Consensus pattern (42 bp):
GTGTGCCTAGGCCGTGTGAGCCACACGGACAAGGACATGGGC
Found at i:91703418 original size:15 final size:15
Alignment explanation
Indices: 91703398--91703453 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
91703388 ACATACATGC
91703398 TCTGTTCTGCTCTGT
1 TCTGTTCTGCTCTGT
* **
91703413 TCTGTTTTGCTCTAC
1 TCTGTTCTGCTCTGT
* *
91703428 TCTGTTTTGTTCTGT
1 TCTGTTCTGCTCTGT
*
91703443 TCAGTTCTGCT
1 TCTGTTCTGCT
91703454 TTGCTCTGTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.04, C:0.23, G:0.18, T:0.55
Consensus pattern (15 bp):
TCTGTTCTGCTCTGT
Found at i:91704137 original size:18 final size:19
Alignment explanation
Indices: 91704112--91704157 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
91704102 ACTTTATTCA
*
91704112 TTTATATAA-ATATTTTAT
1 TTTATATAATATATATTAT
*
91704130 TTTTTATAATTATATATTAT
1 TTTATATAA-TATATATTAT
91704150 TTTATATA
1 TTTATATA
91704158 TGATAATGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTATATAATATATATTAT
Found at i:91711039 original size:29 final size:29
Alignment explanation
Indices: 91710989--91711048 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
91710979 TTCGTGAGGA
* *
91710989 AAAAGAAAAGTATATAGATATACATATAT
1 AAAAGAAAAGCATATAGATATACATAAAT
* *
91711018 AAAAGAAAAGCATTTATG-TATATATAAAT
1 AAAAGAAAAGCATATA-GATATACATAAAT
91711047 AA
1 AA
91711049 GTTAGAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.28
Consensus pattern (29 bp):
AAAAGAAAAGCATATAGATATACATAAAT
Found at i:91712310 original size:15 final size:15
Alignment explanation
Indices: 91712284--91712316 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
91712274 TTTGATGATT
91712284 TTGGGCTATTGGGCTG
1 TTGGGCTATTGGG-TG
91712300 TTGGG-TATTGGGTG
1 TTGGGCTATTGGGTG
91712314 TTG
1 TTG
91712317 TAATTGGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.06, C:0.06, G:0.45, T:0.42
Consensus pattern (15 bp):
TTGGGCTATTGGGTG
Found at i:91712801 original size:40 final size:39
Alignment explanation
Indices: 91712711--91712839 Score: 156
Period size: 41 Copynumber: 3.3 Consensus size: 39
91712701 TCATGCAACT
91712711 TCAGGAGATAGGATTATTCTTCATCT-CTCCGCTGTAAT-
1 TCAGGAGATA-GATTATTCTTCATCTGCTCCGCTGTAATC
91712749 T-AGGAGATAGATTATATCTTCATCTGCTCCGCTGTAATC
1 TCAGGAGATAGATTAT-TCTTCATCTGCTCCGCTGTAATC
* * * *
91712788 TCAGGAGATAGATTCTGGCTTCAATCTGCTCCACTGTAACC
1 TCAGGAGATAGATTAT-TCTTC-ATCTGCTCCGCTGTAATC
91712829 TCAGGGAGATA
1 TCA-GGAGATA
91712840 AGATCTGAAA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
36 6 0.08
37 17 0.21
38 13 0.16
39 1 0.01
40 17 0.21
41 19 0.24
42 7 0.09
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33
Consensus pattern (39 bp):
TCAGGAGATAGATTATTCTTCATCTGCTCCGCTGTAATC
Found at i:91725316 original size:17 final size:17
Alignment explanation
Indices: 91725294--91725328 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
91725284 ATAAAGAAGA
91725294 AAAATATGCATATATAT
1 AAAATATGCATATATAT
*
91725311 AAAATATGTATATATAT
1 AAAATATGCATATATAT
91725328 A
1 A
91725329 TAGGTGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (17 bp):
AAAATATGCATATATAT
Found at i:91725773 original size:3 final size:3
Alignment explanation
Indices: 91725762--91725837 Score: 109
Period size: 3 Copynumber: 25.3 Consensus size: 3
91725752 CAATAATACC
* * *
91725762 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
91725807 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
91725838 GCAAAAGTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
2 1 0.02
3 64 0.98
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:91736836 original size:15 final size:15
Alignment explanation
Indices: 91736818--91736856 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
91736808 ATGATGATTA
*
91736818 TGATGGTGTTGGTGG
1 TGATGGTGATGGTGG
*
91736833 TGATGGTGATGGTGA
1 TGATGGTGATGGTGG
*
91736848 TGGTGGTGA
1 TGATGGTGA
91736857 AGAAGAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.51, T:0.36
Consensus pattern (15 bp):
TGATGGTGATGGTGG
Found at i:91740842 original size:25 final size:23
Alignment explanation
Indices: 91740814--91740874 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 23
91740804 TTTTTTATAA
*
91740814 ATTTTTAATGGTTTTTAATAAATTT
1 ATTTTTAAT--TTTTTAAAAAATTT
91740839 ATTTTTATATTTTTTAAAAAATTT
1 ATTTTTA-ATTTTTTAAAAAATTT
91740863 ATGGTTTTAATT
1 AT--TTTTAATT
91740875 AATTTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 15 0.47
25 10 0.31
26 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (23 bp):
ATTTTTAATTTTTTAAAAAATTT
Found at i:91740845 original size:35 final size:34
Alignment explanation
Indices: 91740790--91740855 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
91740780 AAAAATAAAA
91740790 TTTTTAATAAATTATTTTTTATAAATTTTTAATGG
1 TTTTTAATAAATTATTTTTTAT-AATTTTTAATGG
*
91740825 TTTTTAATAAATT-TATTTTTATATTTTTTAA
1 TTTTTAATAAATTAT-TTTTTATAATTTTTAA
91740856 AAAATTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 9 0.31
35 20 0.69
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (34 bp):
TTTTTAATAAATTATTTTTTATAATTTTTAATGG
Found at i:91746756 original size:71 final size:71
Alignment explanation
Indices: 91746550--91746782 Score: 290
Period size: 71 Copynumber: 3.3 Consensus size: 71
91746540 TCACAAGGTT
* * * *
91746550 TGAACCTAAGATCTCTATACTGGAAATC-AGTTTAACTCTCTGTCATCCTCTAACCCATGAACTT
1 TGAACCTAATATCTCTAAATTGGAAATCGA-TTTAA--CTCTGTCATACTCTAACCCATGAACTT
91746614 CCCAGGGTC
63 CCCAGGGTC
* *
91746623 TAAACCTAATATCTCTAAATTGGAAATCGATTTAACTCAGTCATACTCTAACCCATGAACTTCCC
1 TGAACCTAATATCTCTAAATTGGAAATCGATTTAACTCTGTCATACTCTAACCCATGAACTTCCC
91746688 AGGGTC
66 AGGGTC
* * *** *
91746694 TGAACCTAATATCTCCAAATTGGAAATCGATTTAACTCTGTCATTCTCTAAATTATGTACTT-CC
1 TGAACCTAATATCTCTAAATTGGAAATCGATTTAACTCTGTCATACTCTAACCCATGAACTTCCC
*
91746758 AGGGTT
66 AGGGTC
* *
91746764 TGAACCTAAGATTTCTAAA
1 TGAACCTAATATCTCTAAA
91746783 AGTCACATCA
Statistics
Matches: 141, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
70 23 0.16
71 88 0.62
73 29 0.21
74 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.32
Consensus pattern (71 bp):
TGAACCTAATATCTCTAAATTGGAAATCGATTTAACTCTGTCATACTCTAACCCATGAACTTCCC
AGGGTC
Found at i:91748743 original size:19 final size:19
Alignment explanation
Indices: 91748719--91748755 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
91748709 TTAATACTGC
91748719 TAATCATCATGCCTGATTT
1 TAATCATCATGCCTGATTT
91748738 TAATCATCATGCCTGATT
1 TAATCATCATGCCTGATT
91748756 CTTTCTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (19 bp):
TAATCATCATGCCTGATTT
Found at i:91750141 original size:22 final size:24
Alignment explanation
Indices: 91750116--91750170 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
91750106 TTTAGGCTCG
91750116 TTTATATTA-TTATTTAATTTT-T
1 TTTATATTATTTATTTAATTTTAT
* * *
91750138 TTTAAAATATTTATTTTATTTTAT
1 TTTATATTATTTATTTAATTTTAT
91750162 TTTAATATT
1 TTT-ATATT
91750171 TCATAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
22 7 0.28
23 11 0.44
24 4 0.16
25 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTATATTATTTATTTAATTTTAT
Found at i:91752001 original size:35 final size:35
Alignment explanation
Indices: 91751882--91752012 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
91751872 CCTCATTGAA
* * ***
91751882 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
91751917 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
91751954 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
91751992 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
91752013 CTTTTCCATG
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 47 0.60
38 2 0.03
40 29 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:91759452 original size:35 final size:35
Alignment explanation
Indices: 91759333--91759463 Score: 136
Period size: 35 Copynumber: 3.6 Consensus size: 35
91759323 CCTCATTGAA
* * ***
91759333 ATACCATACCTACATTTTACAACTCGGTATGGGCA
1 ATACCATACCTACATTTCACAACTCAGTATGGATG
* **
91759368 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
*
91759405 ATAATACCATACCTACATATCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
91759443 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
91759464 CTTTGCCATG
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 47 0.60
38 2 0.03
40 29 0.37
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:91762013 original size:9 final size:9
Alignment explanation
Indices: 91761999--91762031 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
91761989 TTTGTGAACT
91761999 TTTTTTAAA
1 TTTTTTAAA
91762008 TTTTTTAAA
1 TTTTTTAAA
91762017 -TTTTTAAA
1 TTTTTTAAA
*
91762025 TATTTTA
1 TTTTTTA
91762032 TTAATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:91765354 original size:273 final size:273
Alignment explanation
Indices: 91764867--91765392 Score: 678
Period size: 273 Copynumber: 1.9 Consensus size: 273
91764857 GGTTGAAATA
* * * *
91764867 TTTTTATATCGATCGAAGAGCTATTTGTTAGCTTCAAAATATACTTTGAATCACTCGATTTCGAG
1 TTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTAAATCACTCGATTTCGAG
* * * *
91764932 TTTGGGAGCTTAAGTCATGGCCATTTTATTGAAGATTGCATAAGTAAAATTTATAGACAAGATTA
66 TTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCAGAAGTAAAATTTATAGACAAGATTA
* * * *
91764997 TTACAACTTTTGGGCTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTAATTTTGATTATATATG
131 TTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTAATTTTAATTATATACG
* *
91765062 AGTTCAATATTATATTTATTAGGTTTTGCATTATTTATTTATTCAAAATTTTAGGATATTTTCTA
196 AGCTCAATATTATATTTATTAGGTTTTACATTATTTATTTATTCAAAATTTTAGGATATTTTCTA
91765127 GGTTGAGATTTTT
261 GGTTGAGATTTTT
* * * * *
91765140 TTTTTATATCGATCGAAGAGCTATCTATTAGCTTTAAAATGCACTTTAAATTATTCGGTTTCGAG
1 TTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTAAATCACTCGATTTCGAG
* *** * * ***
91765205 TTGGGGAGCTCAAGTTATGGTTGTTTTAATGAAGATTGCACGAA-TAAAATTTTTGGGTGAGATT
66 TTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCA-GAAGTAAAATTTATAGACAAGATT
** * * * * *
91765269 ATTATGAGTTTCGGACTTTAATTCGAGTTTAAATTTGATTTTAAGGCTTAATTTTAATTATATGC
130 ATTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTAATTTTAATTATATAC
* * *
91765334 GAGC-CTAATATTGTATTTATTAGGTTTTATATTATTTATTTATTCCAAATTTTAGGATA
195 GAGCTC-AATATTATATTTATTAGGTTTTACATTATTTATTTATTCAAAATTTTAGGATA
91765393 ATTTAAAATA
Statistics
Matches: 213, Mismatches: 38, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
272 1 0.00
273 210 0.99
274 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (273 bp):
TTTTTATATCGATCGAAGAGCTATCTATTAGCTTCAAAATACACTTTAAATCACTCGATTTCGAG
TTGGGGAGCTCAAGTCATGGCCATTTTAATGAAGATTGCAGAAGTAAAATTTATAGACAAGATTA
TTACAACTTTCGGACTTTAATTCAAGTTTAAATTCGATTTGAAGGCTTAATTTTAATTATATACG
AGCTCAATATTATATTTATTAGGTTTTACATTATTTATTTATTCAAAATTTTAGGATATTTTCTA
GGTTGAGATTTTT
Found at i:91767836 original size:433 final size:433
Alignment explanation
Indices: 91766426--91768155 Score: 3428
Period size: 433 Copynumber: 4.0 Consensus size: 433
91766416 AACCTAATCT
91766426 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91766491 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
*
91766556 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATAAAAATGTGTGTAAATGTGTG
131 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91766621 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91766686 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91766751 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
91766816 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
*
91766859 ATCTATTTTTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91766924 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
91766989 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATG-AAATGTGTGTAAATGTGTG
131 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91767053 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91767118 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91767183 AATGTAATTTTTGCCATAATGTGATTTTGGGCTG-TTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
91767247 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
91767290 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91767355 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
91767420 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
131 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91767485 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91767550 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91767615 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
91767680 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
91767723 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
1 ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
91767788 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
66 TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
91767853 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
131 AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
91767918 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
196 AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
91767983 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
261 AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
91768048 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
326 AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
91768113 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
391 ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
91768156 CGAGGGAAAA
Statistics
Matches: 1292, Mismatches: 3, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
431 247 0.19
432 366 0.28
433 679 0.53
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (433 bp):
ATCTATTTCTACCACTAATTTTAGATATAATCAAAGTTTAAATTTTTACTCATGATGGATATTTG
TGTATTTTGATGTTTAATGGTAGAAAATGCATGTTAGATGTTAGATAAATGATTTTTGCTAAGTG
AATTTCGGTAAAAATATAAAAAAGGACTTGTTTGTAAAAGTTATGAAAATGTGTGTAAATGTGTG
AATAAAAGGAAAATATGGGCTTCTATAAGCATGTATAAGATTCGACTAGGCTTGGGTAATGAAGA
AATTTGATAAAACATTTTATGAGCCTAGGGACTAAAATTAAAAAATGTGAAACTTTAGGGGTAAA
AATGTAATTTTTGCCATAATGTGATTTTGGGCTGTTTTTAATAGTATAATTATTGAATAAGTTAA
ATGTAATATTATAGATCAAGAAAAACAAGGTTCAGACCTAAAA
Found at i:91769573 original size:12 final size:12
Alignment explanation
Indices: 91769552--91769589 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
91769542 GGGCCTATGC
*
91769552 AAACACAAAACA
1 AAACAAAAAACA
91769564 AAACAAAAAAC-
1 AAACAAAAAACA
*
91769575 AAACTAAAAACA
1 AAACAAAAAACA
91769587 AAA
1 AAA
91769590 AAATAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.79, C:0.18, G:0.00, T:0.03
Consensus pattern (12 bp):
AAACAAAAAACA
Found at i:91772789 original size:261 final size:263
Alignment explanation
Indices: 91772351--91772841 Score: 720
Period size: 261 Copynumber: 1.9 Consensus size: 263
91772341 AAGGCGATGT
* *
91772351 TCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAA
1 TCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
* * * * *
91772416 AATAATCGAATGTCCCTTTAGAATTTTATTCATGTTTTCTAAAAACTCTTTAAAACGAAGGAAAT
66 AATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
* * *
91772481 GTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTATCGTGTTGGGTTGCAATTTCCCGTTCGTTC
131 GTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATCTCCCGTTCGTTC
*
91772546 AAAATAATCGAATACTCCTTTGGAATTTCACTCATATCTTTAAAAATTCTCCAAAACGAAGGTAA
196 AAAATAATCGAATACTCCTTTAGAATTTCACTCATATCTTTAAAAATTCTCCAAAACGAAGGTAA
91772611 TAC
261 TAC
* * * * *
91772614 TCGATGTTTGGCAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAA
1 TCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
* * *
91772678 AATAATCGAATATTCCTTT-GAAATTTCAC-CTATGTCTT-TAAAAATTCTCTAAAACGAAGGTA
66 AATAATCGAATATCCCTTTAG-AATTTCACTC-ATGTCTTCTAAAAACTCTCTAAAACGAAGGAA
* * * *
91772740 ATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATCGTGCTGGGTTGCGATCTCCTGTTTGT
129 ATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATCTCCCGTTCGT
*
91772805 TCAAAATAATCGAATATTCCTTTAGAATTTCACTCAT
194 TCAAAATAATCGAATACTCCTTTAGAATTTCACTCAT
91772842 GTTCTCCAAA
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
261 116 0.57
262 69 0.34
263 17 0.08
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (263 bp):
TCGATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCCCGTTCGCTCAA
AATAATCGAATATCCCTTTAGAATTTCACTCATGTCTTCTAAAAACTCTCTAAAACGAAGGAAAT
GTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATCTCCCGTTCGTTC
AAAATAATCGAATACTCCTTTAGAATTTCACTCATATCTTTAAAAATTCTCCAAAACGAAGGTAA
TAC
Found at i:91772834 original size:131 final size:131
Alignment explanation
Indices: 91772321--91772843 Score: 692
Period size: 130 Copynumber: 4.0 Consensus size: 131
91772311 TAATTATTCA
* * * ** * * * *
91772321 TTTAAAAGTTCTTTGAAACGAAGGCGATGTTCGATATTTGGCAATTCGCGGAATCATGCCCTAAC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * * *
91772386 GTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTTATTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
*
91772451 T
131 C
* * * *
91772452 TTCTAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTAT
1 TT-TAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
* * * *
91772517 CGTGTTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATACTCCTTTGGAATTTCACTCATA
65 CGTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATG
91772582 TC
130 TC
* **
91772584 TTTAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
91772648 GTGCTGGGTTGCGATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTT-GAAATTTCAC-CTAT
66 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAG-AATTTCACTC-AT
91772711 GTC
129 GTC
*
91772714 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATTGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * *
91772779 GTGCTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
91772844 TCTCCAAATT
Statistics
Matches: 346, Mismatches: 40, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
129 2 0.01
130 118 0.34
131 115 0.33
132 111 0.32
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (131 bp):
TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTCGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGT
C
Found at i:91781562 original size:261 final size:263
Alignment explanation
Indices: 91781132--91781618 Score: 681
Period size: 261 Copynumber: 1.9 Consensus size: 263
91781122 ATGTTTGATA
* * * *
91781132 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGAGTTGCAATTTCTCGTTTGCTCAAAATAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAAAACAAT
* ** * * **
91781197 CGAATGTCCCTTTAGAATTTCATTCATGTTTTCTAAAAACTCTTTAAAATGAAGGAAATGTTCGA
66 CGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACAAAGGAAATGTTCGA
* * * *
91781262 TGTTTGGCAATTCGGGGAGTCGTGCCCTATCGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATA
131 TGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTCAAAATA
*
91781327 ATCGAATATCCCTTTGGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTAATACTCG
196 ATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTAATACTCG
91781392 ATG
261 ATG
* * * * *
91781395 TTTGGCAATTCG-GGAATCGTGCCCTATCGTGTTGGGTTGCGATTTCCCGTTCGTTAAAAACAAT
1 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAAAACAAT
* * * * *
91781459 TGAATATTCCTTTGGAATTTCACCCATGTCTT-TAAAAATTCTCTAAAACAAAGGTAATGTTCGA
66 CGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACAAAGGAAATGTTCGA
* * *
91781523 TGTTTGGAAATTTGGGGAATCGTGCCCTATCATGCTGGGTTGCGATCTCCTGTTTGTTCAAAATA
131 TGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTCAAAATA
* *
91781588 ATCGAATATTCCTTTAGAATTTCATTCATGT
196 ATCGAATATCCCTTTAGAATTTCACTCATGT
91781619 TCTCCAAATT
Statistics
Matches: 193, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
261 113 0.59
262 68 0.35
263 12 0.06
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (263 bp):
TTTGGCAATTCGCGGAATCGTGCCCTAACGTGCTGAGTTGCAATTTCCCGTTCGCTAAAAACAAT
CGAATATCCCTTTAGAATTTCACCCATGTCTTCTAAAAACTCTCTAAAACAAAGGAAATGTTCGA
TGTTTGGAAATTCGGGGAATCGTGCCCTATCATGCTGGGTTGCAATCTCCTGTTCGTTCAAAATA
ATCGAATATCCCTTTAGAATTTCACTCATGTCTTTAAAAATTCTCCAAAACGAAGGTAATACTCG
ATG
Found at i:91781611 original size:131 final size:131
Alignment explanation
Indices: 91781096--91781618 Score: 645
Period size: 130 Copynumber: 4.0 Consensus size: 131
91781086 TAATTATTCA
* * * * * * * *
91781096 TTTAAAAATTCTTTGAAACGAATGTGATGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * *
91781161 GTGCTGAGTTGCAATTT-CTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATG
66 GTGCTGGGTTGCAATTTCCT-GTTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATG
*
91781225 TT
130 TC
* * * * *
91781227 TTCTAAAAACTCTTTAAAATGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAGTCGTGCCCTAT
1 TT-TAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTAT
*
91781292 CGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTGGAATTTCACTCATG
65 CGTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATG
91781357 TC
130 TC
* **
91781359 TTTAAAAATTCTCCAAAACGAAGGTAATACTCGATGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * * * * *
91781423 GTGTTGGGTTGCGATTTCCCGTTCGTTAAAAACAATTGAATATTCCTTTGGAATTTCACCCATGT
66 GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
91781488 C
131 C
* * *
91781489 TTTAAAAATTCTCTAAAACAAAGGTAATGTTCGATGTTTGGAAATTTGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * *
91781554 ATGCTGGGTTGCGATCTCCTGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCATTCATGT
66 GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
91781619 TCTCCAAATT
Statistics
Matches: 338, Mismatches: 51, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
130 115 0.34
131 111 0.33
132 110 0.33
133 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (131 bp):
TTTAAAAATTCTCTAAAACGAAGGTAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCAATTTCCTGTTCGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
C
Found at i:91787639 original size:20 final size:18
Alignment explanation
Indices: 91787612--91787662 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 18
91787602 AGGGTTTCTT
*
91787612 GGTTTTTTTTTTGGGGTTA
1 GGTTTTTTTTTT-TGGTTA
91787631 GGTTTTTTTTTTTGGTTA
1 GGTTTTTTTTTTTGGTTA
91787649 GGTTTTTTCTTTTT
1 GGTTTTTT-TTTTT
91787663 CTTTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.04, C:0.02, G:0.24, T:0.71
Consensus pattern (18 bp):
GGTTTTTTTTTTTGGTTA
Found at i:91787654 original size:15 final size:15
Alignment explanation
Indices: 91787636--91787687 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
91787626 GGTTAGGTTT
91787636 TTTTTTTTGGTTAGG
1 TTTTTTTTGGTTAGG
* ***
91787651 TTTTTTCTT-TTTCTT
1 TTTTTT-TTGGTTAGG
91787666 TTTTTTTTGGTTAGG
1 TTTTTTTTGGTTAGG
91787681 TTTTTTT
1 TTTTTTT
91787688 GGGGGGGGCT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
14 2 0.07
15 23 0.85
16 2 0.07
ACGTcount: A:0.04, C:0.04, G:0.15, T:0.77
Consensus pattern (15 bp):
TTTTTTTTGGTTAGG
Found at i:91787661 original size:18 final size:18
Alignment explanation
Indices: 91787612--91787687 Score: 74
Period size: 18 Copynumber: 4.5 Consensus size: 18
91787602 AGGGTTTCTT
91787612 GGTTTTTTTTTTGGGGTTA
1 GGTTTTTTTTTT-GGGTTA
*
91787631 GGTTTTTTTTTTTGGTTA
1 GGTTTTTTTTTTGGGTTA
*
91787649 GGTTTTTTCTTT---TT-
1 GGTTTTTTTTTTGGGTTA
*
91787663 -CTTTTTTTTTT-GGTTA
1 GGTTTTTTTTTTGGGTTA
91787679 GGTTTTTTT
1 GGTTTTTTT
91787688 GGGGGGGGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
13 9 0.19
15 4 0.08
17 7 0.15
18 16 0.33
19 12 0.25
ACGTcount: A:0.04, C:0.03, G:0.21, T:0.72
Consensus pattern (18 bp):
GGTTTTTTTTTTGGGTTA
Found at i:91788449 original size:88 final size:84
Alignment explanation
Indices: 91788355--91788764 Score: 261
Period size: 88 Copynumber: 4.8 Consensus size: 84
91788345 AAAACAAAAA
* *
91788355 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
**
91788420 AAACTTAACTTGAAAAGCAGATT
65 AAACAGAA-TT-AAAA-CAGATT
* * ** *
91788443 TTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTA
1 TTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-
**
91788507 AAAAACAGAAATT-AAA-AGA--
63 TGAAACAG-AATTAAAACAGATT
* * * ** *** ** * *
91788526 CT-CAACTCAACTCTCGCA-GAAATTAAAAACCTTAACTCACCTCTTGCAATATGAGTTGAATTT
1 TTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-TT
**
91788589 TTTTG-AA-A-AA--AAAACAGAAA
60 TTTTGAAACAGAATTAAAACAGATT
* *
91788609 TTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTG
1 TTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
91788673 AAAACAGAATTTGAAAAACAGATT
65 -AAACAGAA-TT--AAAACAGATT
* * * * *
91788697 TTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTG
1 TTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
91788762 AAA
65 AAA
91788765 AATATAAATT
Statistics
Matches: 244, Mismatches: 49, Indels: 58
0.70 0.14 0.17
Matches are distributed among these distances:
79 6 0.02
80 3 0.01
81 11 0.05
82 35 0.14
83 9 0.04
84 34 0.14
85 8 0.03
86 5 0.02
87 6 0.02
88 113 0.46
89 12 0.05
90 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (84 bp):
TTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AACAGAATTAAAACAGATT
Found at i:91788692 original size:14 final size:14
Alignment explanation
Indices: 91788669--91788703 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91788659 TGAGTTGATT
91788669 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
91788682 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
91788696 TTTGAAAA
1 TTTGAAAA
91788704 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:91788895 original size:77 final size:74
Alignment explanation
Indices: 91788723--91789004 Score: 304
Period size: 77 Copynumber: 3.8 Consensus size: 74
91788713 ATGTGACCCG
* * * * *
91788723 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTGAAAAATATAAATTGAAAAAATACCTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAGAAATTG--AAAATACCTC
*
91788788 AGTGTGTGATCTGA
63 AG-GCGTGATCT-A
* *
91788802 A-GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACCTCA
*
91788866 GCGCGTGAGCTA
64 G-GCGTGATCTA
* *
91788878 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA-A
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGG
*
91788942 CGTG-TCTTG
66 CGTGATC-TA
* ** *
91788951 AGGCTTAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACA-AAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAA
91789005 ATGGAAATTG
Statistics
Matches: 178, Mismatches: 21, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
71 10 0.06
72 12 0.07
73 33 0.19
75 20 0.11
76 12 0.07
77 45 0.25
78 30 0.17
79 16 0.09
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (74 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAGG
CGTGATCTA
Found at i:91789134 original size:84 final size:86
Alignment explanation
Indices: 91788949--91789438 Score: 416
Period size: 91 Copynumber: 5.7 Consensus size: 86
91788939 CAACGTGTCT
* ** * *
91788949 TGAGGCTTAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACA-AAATTGAAAAATGGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAA--CAAA
*
91789012 TTGAAAATACCTCGGCGTGTGATC
64 AT-AAAATACCTCGGCGTGTGATC
* * * **
91789036 TGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGAAGTA-AAAA-
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAAAAT
* *
91789099 AAAATACCTCAGTGTGTGATC
66 AAAATACCTCGGCGTGTGATC
* *
91789120 TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAACGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAAAC-AA
91789185 AATTGAAAATACCTCGGCGTGTGATC
63 AA-T-AAAATACCTCGGCGTGTGATC
*
91789211 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTG---------
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAAACAAA
* * * *
91789267 --AAAATAGCTCAGCGCGTGAGC
64 ATAAAATACCTCGGCGTGTGATC
** * **
91789288 CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAAAAACAGAAATTGAAAAAC-
* *
91789353 GAAATTGAAAATACCTCGGCGTGTGACC
61 -AAAAT-AAAATACCTCGGCGTGTGATC
* * * ** *
91789381 TGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAA
91789439 TTACCTCAGC
Statistics
Matches: 333, Mismatches: 45, Indels: 47
0.78 0.11 0.11
Matches are distributed among these distances:
77 48 0.14
79 21 0.06
84 51 0.15
86 23 0.07
87 35 0.11
88 9 0.03
89 9 0.03
90 18 0.05
91 74 0.22
93 45 0.14
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (86 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAAAAT
AAAATACCTCGGCGTGTGATC
Found at i:91789220 original size:91 final size:88
Alignment explanation
Indices: 91788914--91789270 Score: 435
Period size: 91 Copynumber: 4.1 Consensus size: 88
91788904 AGTTGATTTT
* * * **
91788914 TTGAAAACAG-AAATTGAAAATACCTCAACGTGT-CT-TGAGGCTTAACTCATTTCTCGCAATAT
1 TTGAAAA-AGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
*
91788976 GAGTTGAATTTTGAAA-ACA-AAA
65 GAGTTGATTTTTGAAAGACAGAAA
* *
91788998 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAA-GAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
91789063 AAGTTGATTTTTGAAAAATATAAA
65 GAGTTGATTTTTGAAAGACAGAAA
** * *
91789087 TTGAAGTA-AAAA---AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAAGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
91789148 AGTTGATTTTTTTGAAAGACAGAAA
66 AGTTGA--TTTTTGAAAGACAGAAA
*
91789173 TTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAA-GAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
91789238 GAGTTGATTTTTTTGAAAGACAGAAA
65 GAGTTGA--TTTTTGAAAGACAGAAA
91789264 TTGAAAA
1 TTGAAAA
91789271 TAGCTCAGCG
Statistics
Matches: 236, Mismatches: 24, Indels: 19
0.85 0.09 0.07
Matches are distributed among these distances:
83 1 0.00
84 59 0.25
85 21 0.09
86 21 0.09
87 41 0.17
88 6 0.03
89 9 0.04
91 78 0.33
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (88 bp):
TTGAAAAAGAAAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAGACAGAAA
Found at i:91789300 original size:77 final size:78
Alignment explanation
Indices: 91789184--91789349 Score: 244
Period size: 77 Copynumber: 2.1 Consensus size: 78
91789174 TGAAAAACGA
* * * ** *
91789184 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
91789248 TTTTGAAAGACAG
66 TTTTGAAAGACAG
*
91789261 AAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTT
*
91789326 TTTTTGAAAGGCAG
65 TTTTTGAAAGACAG
91789340 AAATTGAAAA
1 AAATTGAAAA
91789350 ACGGAAATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 54 0.68
79 25 0.32
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (78 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTT
TTTTGAAAGACAG
Found at i:91789391 original size:170 final size:164
Alignment explanation
Indices: 91788838--91789830 Score: 780
Period size: 170 Copynumber: 6.0 Consensus size: 164
91788828 GTTGATTTTT
* * * * * * *
91788838 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * ** * **
91788903 AAGTTGA-TTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCATTTC
66 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTC
*
91788967 TCGCAATATGAGTTGA--ATTTTGAAAACA-AAA
131 TCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
* *
91788998 TTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
91789063 AAGTTGA--TTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTGTGATCTGAA-G
66 GAGTTGATTTTTTTG-AAAACAGAAATT---G------AAAATACCTCA--GCGTG-TCTCAAGG
91789125 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
118 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAA
* *
91789173 TTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
91789238 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGC-CAAGGCTCAACTCA
66 GAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCTCAAGGCTCAACTCA
* *
91789302 CCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAA
127 CCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAA
* * *
91789343 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * *
91789408 GAGTTGACTTTTTTT-ACAACAGAAATTGAAATTACCTCAGCGTGTC-CTGAGGCTCAACTCACC
66 GAGTTGA-TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTC-AAGGCTCAACTCACC
* * *
91789471 GCTCGCAATACGAGTTGACTTTTTTT-ACAACAGAAA
129 TCTCGCAATATGAGTTGA-TTTTTTTGAAAACAGAAA
*
91789507 TT--------GAAA-T-----TACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
91789556 GAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGAC-C
66 GAGTTGA--TTTTT------------TTG-AAAACAGAAATTGAAAATACCTCAGCGTGT--CTC
* * * * *
91789620 TGAGGCTCAACTCGCCACTCGTAATACGAGTTGA-TTTTTTG---AC-----
114 -AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
* * *
91789663 ---AACAA---AAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * *
91789720 GAGTTGATTTTTTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCA
66 GAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCGTGT-CTC-AAGGCTCAACTCA
91789785 CCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
127 CCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAA
91789824 TTGAAAA
1 TTGAAAA
91789831 TAGCTCAGCG
Statistics
Matches: 699, Mismatches: 65, Indels: 134
0.78 0.07 0.15
Matches are distributed among these distances:
148 33 0.05
149 5 0.01
150 15 0.02
151 61 0.09
152 7 0.01
155 1 0.00
156 6 0.01
158 3 0.00
159 7 0.01
160 74 0.11
161 4 0.01
163 39 0.06
164 60 0.09
165 35 0.05
166 9 0.01
167 36 0.05
168 46 0.07
169 30 0.04
170 87 0.12
171 37 0.05
172 4 0.01
173 8 0.01
174 4 0.01
175 72 0.10
176 3 0.00
177 13 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (164 bp):
TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTCAAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTTTTGAAAACAGAAA
Found at i:91789420 original size:93 final size:93
Alignment explanation
Indices: 91789250--91789422 Score: 231
Period size: 93 Copynumber: 1.9 Consensus size: 93
91789240 GTTGATTTTT
* * * *
91789250 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
*
91789315 GAGTCGATTTTTTTTTGAAAGGCAGAAA
66 GAGTCGACTTTTTTTTGAAAGGCAGAAA
* * * * *
91789343 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCGCAATA
*
91789407 CGAGTTGACTTTTTTT
65 CGAGTCGACTTTTTTT
91789423 ACAACAGAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCGCAATAC
GAGTCGACTTTTTTTTGAAAGGCAGAAA
Found at i:91789476 original size:74 final size:74
Alignment explanation
Indices: 91789353--91789587 Score: 332
Period size: 74 Copynumber: 3.1 Consensus size: 74
91789343 TTGAAAAACG
* * * * *
91789353 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTT
1 GAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
91789418 TTTTT-ACAACA
63 TTTTTGACAACA
* *
91789429 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
91789494 TTT-ACAACA
65 TTTGACAACA
91789503 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91789568 TTGA-AAGGCA
66 TTGACAA--CA
91789578 GAAATTGAAA
1 GAAATTGAAA
91789588 AACGGAAATT
Statistics
Matches: 151, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
73 9 0.06
74 108 0.72
75 12 0.08
76 22 0.15
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (74 bp):
GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGACAACA
Found at i:91789672 original size:89 final size:88
Alignment explanation
Indices: 91789503--91789676 Score: 235
Period size: 91 Copynumber: 2.0 Consensus size: 88
91789493 TTTTACAACA
* * *
91789503 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
*
91789568 TTGAAAGGCAGAAATTGAAAAACG
66 TTGAAA-GCAAAAATTGAAAAACG
* * *
91789592 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGTAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
91789656 TTTTGACAA-CAAAAATTGAAA
64 TTTTGA-AAGCAAAAATTGAAA
91789677 TTACCTCAGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
89 33 0.44
90 8 0.11
91 34 0.45
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAAATTGAAAAACG
Found at i:91789725 original size:164 final size:165
Alignment explanation
Indices: 91789429--91790485 Score: 1350
Period size: 166 Copynumber: 6.4 Consensus size: 165
91789419 TTTTACAACA
* * *
91789429 GAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-TT
91789492 TTTTT-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
65 TTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
91789556 GAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACG
130 GAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACG
* * *
91789592 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGTAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
*
91789656 TTTTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
91789721 AGTTGA-TTTTTT------------TTGAAAGACG
131 AGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACG
* *
91789743 GAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
* * * * *
91789808 TTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAA
66 TTTTGACA-ACAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAA
* * *
91789872 TATGAGTCGATTTTTTTTTTGAAAAGCAGAAATTAAAAAACG
127 TATGAGTTGA---TTTTTTTGAAAGGCAGAAATTGAAAAACG
* * * *
91789914 GAAATTGAAAATATCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
91789979 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
91790044 AGTTGATTTTTTTTGAAAGGCAGAAATTGAAAAACG
131 AGTTGA-TTTTTTTGAAAGGCAGAAATTGAAAAACG
* *
91790080 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
91790145 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* *
91790210 AGTTGATTTTTTT-AAAGACAGAAATTGAAAAATG
131 AGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACG
* *
91790244 GAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTC
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA-T-
* * * * *
91790309 TTTCAAAAACATAATAATGAAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGACTCAACTCA
64 TTT--------T--T--TGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
* * ** * * * *
91790374 CCTCTCGCAATATGAGTTGA-TTCTTTCAAAAACATAATAATG-AAGACA
117 CCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAA-ATTGAAAAACG
* *
91790422 GAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
1 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
91790485 T
66 T
91790486 GAAAAAGTAG
Statistics
Matches: 791, Mismatches: 62, Indels: 71
0.86 0.07 0.08
Matches are distributed among these distances:
151 66 0.08
152 9 0.01
153 18 0.02
155 36 0.05
156 2 0.00
159 6 0.01
163 34 0.04
164 142 0.18
165 41 0.05
166 162 0.20
167 2 0.00
168 36 0.05
170 19 0.02
171 74 0.09
174 4 0.01
175 1 0.00
176 38 0.05
177 5 0.01
178 93 0.12
179 3 0.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (165 bp):
GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTT
TTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACG
Found at i:91789782 original size:78 final size:77
Alignment explanation
Indices: 91789582--91789888 Score: 408
Period size: 77 Copynumber: 4.0 Consensus size: 77
91789572 AAGGCAGAAA
* * * * * * *
91789582 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGTAATAC
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91789647 GAGTTGA-TTTT
66 GAGTTGATTTTT
* * *
91789658 TTGACA-ACAAAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91789720 GAGTTGATTTTTT
66 GAGTTGA-TTTTT
* * *
91789733 TTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
91789798 GAGTTGATTTTT
66 GAGTTGATTTTT
* * *
91789810 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
*
91789874 TGAGTCGATTTTT
65 TGAGTTGATTTTT
91789887 TT
1 TT
91789889 TTTGAAAAGC
Statistics
Matches: 203, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
73 32 0.16
75 32 0.16
76 28 0.14
77 75 0.37
78 36 0.18
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (77 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTT
Found at i:91789797 original size:560 final size:560
Alignment explanation
Indices: 91788791--91790076 Score: 1809
Period size: 561 Copynumber: 2.2 Consensus size: 560
91788781 ATACCTTAGT
* * ** * * *
91788791 GTGTGATCTGAAGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTG
1 GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTT-ACA-ACAGAAATTG
* * ** * * *
91788855 AAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAA
64 AAATTACCTCA--GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-TAA
* * **
91788920 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAAT
126 ACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAT
* *
91788985 TTTGAAAACAAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCA
191 TTTGAAAACAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCA
* * *
91789050 CCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGAAGTAAAAAAAAATACCTCAGTGTG
256 CCACTCGCAATACAAGTTGATTTTTGAAAAATATAAATT--AG-----AAAAATACCTCAGCGTG
*
91789115 TGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
314 T-ACCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAC----A--G----
91789180 ACGAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
368 A-GAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
91789245 TTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGC
432 TTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGC
* *
91789310 AATATGAGTCGA-TTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
497 AATATGAGTCGATTTTTTTTTTGAAAAGCAGAAATTAAAAAACGGAAATTGAAAATACCTCGGC
91789373 GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAA
* *
91789438 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTTTTTACAACA
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTA-AACA
* * *
91789503 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
129 GAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATT
*
91789568 TTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTC
192 TTGAAA-ACA-AAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTC
* * * * *
91789633 GCCACTCGTAATACGAGTTGATTTTTTGACAACA-A-AAATT-G-AAATTACCTCAGCGTGT-CC
255 ACCACTCGCAATACAAGTTGA-TTTTTGA-AAAATATAAATTAGAAAAATACCTCAGCGTGTACC
*
91789693 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGAC-G-G-AAATTGAAAAT
318 TGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAGAAAATTGAAAAT
91789755 ACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACA
382 ACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACA
91789820 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
447 GAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTT
*
91789885 TTTTTTTGAAAAGCAGAAATTAAAAAACGGAAATTGAAAATATCTCGGC
512 TTTTTTTGAAAAGCAGAAATTAAAAAACGGAAATTGAAAATACCTCGGC
*
91789934 GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAA
91789999 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGG
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT-AAA--
91790064 CAGAAATTGAAAA
127 CAGAAATTGAAAA
91790077 ACGGAAATTG
Statistics
Matches: 646, Mismatches: 44, Indels: 47
0.88 0.06 0.06
Matches are distributed among these distances:
560 138 0.21
561 171 0.26
562 1 0.00
563 12 0.02
567 1 0.00
573 34 0.05
574 14 0.02
575 15 0.02
579 37 0.06
580 64 0.10
581 20 0.03
582 46 0.07
583 9 0.01
584 73 0.11
585 8 0.01
586 3 0.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (560 bp):
GTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAACAGA
AATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGA
AAACAAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACT
CGCAATACAAGTTGATTTTTGAAAAATATAAATTAGAAAAATACCTCAGCGTGTACCTGAAGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAGAAAATTGAAAATACCTCGGCG
TGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAA
AATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGA
AAAGCAGAAATTAAAAAACGGAAATTGAAAATACCTCGGC
Found at i:91790159 original size:90 final size:89
Alignment explanation
Indices: 91789990--91790165 Score: 257
Period size: 92 Copynumber: 2.0 Consensus size: 89
91789980 TTTGACAACA
* * *
91789990 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
91790055 TTTGAAAGGCAGAAATTGAAAAACG
66 TTTGAAA-GCAGAAATTGAAAAACG
* *
91790080 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
91790144 TTTTTGACAA-CAGAAATTGAAA
64 TTTTTGA-AAGCAGAAATTGAAA
91790166 TTACCTCAGC
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
90 34 0.44
91 9 0.12
92 35 0.45
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (89 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTTGAAAGCAGAAATTGAAAAACG
Found at i:91790205 original size:727 final size:729
Alignment explanation
Indices: 91788838--91790404 Score: 2014
Period size: 727 Copynumber: 2.1 Consensus size: 729
91788828 GTTGATTTTT
* * * * *
91788838 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCTAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCACTCGCAATAC
* * * **
91788903 AAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCATTTCT
66 AAGTTGATTTTTTGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
*
91788968 CGCAATATGAGTTGAATTTTGAAAACAAAATTGAAAAATGGAAATTGAAAATACCTCGGCGTGTG
131 CGCAATATGAGTTGAATTTT-------AAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTG
* *
91789033 ATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGAAGTAAAA
189 ATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAGAAATT--AG-----
* * * * *
91789098 AAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
247 AAAAATACCTCAGCGCGTGAGCTCAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGA
* * *
91789163 AAGACAGAAATTGAAAAACGAAAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCT
312 AAGACAGAAATTAAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCG
* * *
91789228 CTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGG
377 CTCGCAATACGAGTTGACTTTTTTGAAAGACAGAAATTGAAAATACCTCA-CGCGTGAGCCAAGG
91789293 CTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAAT
441 CTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAAT
* *
91789358 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTT
506 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTT
91789423 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTG
571 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTG
*
91789488 ACTTTTTTTACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
636 A-TTTTTTTAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
91789552 ATATGAGTTGATTTTTTTGAAAGGCAGAAA
700 ATATGAGTTGATTTTTTTGAAAGGCAGAAA
* * * * * *
91789582 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGTAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCACTCGCAATAC
* * * *
91789647 GAGTTGATTTTTTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
66 AAGTTGATTTTTTGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
** *
91789712 CGCAATATGAGTTG-ATTTT-TTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGATCTGAG
131 CGCAATATGAGTTGAATTTTAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAG
* * *
91789775 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATT-G-AAAATAGCTCA
196 GCTCAACTCACCTCTCGCAATATAAGTTGA--TTTTTGAAAAACAGAAATTAGAAAAATACCTCA
91789838 GCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGAAA-AGCAG
259 GCGCGTGAGCTCAA-GCTCAACTCACCTCTCGCAATATGAGTCGA---TTTTTTTGAAAGA-CAG
* * *
91789901 AAATTAAAAAACGGAAATTGAAAATATCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAA
319 AAATTAAAAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAA
* * * *
91789966 TACGAGTTGACTTTTTTGACA-ACAGAAATTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACT
384 TACGAGTTGACTTTTTTGAAAGACAGAAATTGAAAATACCTCACGCGTGAGCC-AAGGCTCAACT
*
91790028 CACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAAT
448 CACCTCTCGCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAAT
*
91790092 ACCTCGGCGTGTGACTTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTTTTTGACAACA
513 ACCTCGGCGTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTT-ACAACA
* *
91790156 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
577 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTT
* *
91790221 TTAAAGACAGAAATTGAAAAATGGAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCG
642 TTAAAGACAGAAA-T------T-GAAA-T-----TACCTCAGCGTGT--CCTGAGGCTCAACTCA
* * * ** *
91790286 CCTCTCGCAATACGAGTTGA-TTCTTTCAAAAACATAATA
691 CCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAA-A
* * * * *
91790325 ATG-AAAACAGAAATTGAAAATACCTC-G-GCGTGACCTGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCACTCGCAATAC
* * *
91790387 GAGTTGATTCTTTCAAAA
66 AAGTTGATTTTTTGAAAA
91790405 ACATAATAAT
Statistics
Matches: 723, Mismatches: 73, Indels: 58
0.85 0.09 0.07
Matches are distributed among these distances:
726 16 0.02
727 164 0.23
728 83 0.11
730 20 0.03
731 91 0.13
734 2 0.00
735 73 0.10
736 1 0.00
737 16 0.02
740 44 0.06
741 13 0.02
742 34 0.05
743 42 0.06
744 124 0.17
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (729 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGACCTAAGGCTCAACTCACCACTCGCAATAC
AAGTTGATTTTTTGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGAATTTTAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGATCTGAG
GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAGAAATTAGAAAAATACCTCAGC
GCGTGAGCTCAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGACAGAAATTAA
AAAACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGT
TGACTTTTTTGAAAGACAGAAATTGAAAATACCTCACGCGTGAGCCAAGGCTCAACTCACCTCTC
GCAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
GTGTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTAAAGACA
GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAGGCAGAAA
Found at i:91790222 original size:76 final size:75
Alignment explanation
Indices: 91790080--91790240 Score: 236
Period size: 74 Copynumber: 2.1 Consensus size: 75
91790070 TTGAAAAACG
* *
91790080 GAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
91790145 TTTTGACAACA
65 TTTTGACAACA
* * *
91790156 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
*
91790220 TTT-AAAGACA
66 TTTGACA-ACA
91790230 GAAATTGAAAA
1 GAAATTGAAAA
91790241 ATGGAAATTA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
73 2 0.03
74 53 0.69
76 22 0.29
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTTGACAACA
Found at i:91790391 original size:88 final size:88
Alignment explanation
Indices: 91790152--91790483 Score: 488
Period size: 88 Copynumber: 3.8 Consensus size: 88
91790142 TTTTTTTGAC
* * *
91790152 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * * *
91790217 TTTTTTAAAGACAGAA-ATTGAA
66 TCTTTCAAAAACATAATAATGAA
* * *
91790239 AA-ATGGAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AACA--GAAATTGAAAATACCTCGGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
91790303 TGATTCTTTCAAAAACATAATAATGAA
62 TGATTCTTTCAAAAACATAATAATGAA
*
91790330 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
91790395 TCTTTCAAAAACATAATAATGAA
66 TCTTTCAAAAACATAATAATGAA
* *
91790418 GACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
91790483 T
66 T
91790484 TTGAAAAAGT
Statistics
Matches: 221, Mismatches: 18, Indels: 11
0.88 0.07 0.04
Matches are distributed among these distances:
86 1 0.00
87 2 0.01
88 141 0.64
90 69 0.31
91 7 0.03
92 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (88 bp):
AACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TCTTTCAAAAACATAATAATGAA
Found at i:91790583 original size:727 final size:707
Alignment explanation
Indices: 91789119--91790605 Score: 1753
Period size: 727 Copynumber: 2.0 Consensus size: 707
91789109 AGTGTGTGAT
* * *
91789119 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAAACGA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGACAGAAATTAAAAAACGA
* * * *
91789184 AAATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTT
*
91789249 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
131 TTTGAAAGACAGAAATTGAAAATACCTCA-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA
91789314 TGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA
195 TGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA
* *
91789379 CCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAAATTACC
260 CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAAATTACC
*
91789444 TCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTTTTTACAACAGAAATT
325 TCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTTTTTAAAACAGAAATT
* * *
91789509 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
390 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTCTTTCAAA
** * * * *
91789574 GGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACT
455 AACAGAAAATGAAAAACAGAAATTGAAAATACCTCGGCG-GTGACCTGAGACTCAACTCACCACT
* * *
91789639 CGTAATACGAGTTGATTTTTTGACAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
519 CGCAATACGAGTTGATTTTTTGACAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAAC
* *
91789704 TCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACGGAAATTGAAAATACCTCGGCGTGTGA
584 TCACCTCTCGCAATATGAGCTGA---TTTTTGAAAGAAGGAAATT-AAAATA------C--GTGA
* * *
91789769 TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAG
637 --T---G-TCAACCCACCTCTCGCAATATGAGTTGA-TTTCTTGAAAGACAGAAATTGAAAATAC
91789834 CTCAGCGCGTGAGC
695 CTCA-CGCGTGAGC
*
91789848 C-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTTTGAAA-AGCAGAAATTAAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA---TTTTTTTGAAAGA-CAGAAATTAAAAA
* * *
91789911 ACGGAAATTGAAAATATCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGA
62 ACGAAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGA
* * * *
91789976 CTTTTTTGACA-ACAGAAATTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGC
127 CTTTTTTGAAAGACAGAAATTGAAAATACCTCACGCGTGAGCC-AAGGCTCAACTCACCTCTCGC
*
91790038 AATATGAGTTGA-TTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGT
191 AATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGT
*
91790102 GTGACTTGAGGCTCAACTCACCACTCGCAATACGAGTTGA-TTTTTTTGACAACAGAAATTGAAA
256 GTGACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTT-ACAACAGAAATTGAAA
* *
91790166 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAGACA
320 TTACCTCAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTTTTTAAA-ACA
* *
91790230 GAAATTGAAAAATGGAAATTAAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCA
384 GAAA-T------T-GAAA-T-----TACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCA
*
91790295 ATACGAGTTGA-TTCTTTCAAAAACATAATAATG-AAAACAGAAATTGAAAATACCTCGGC-GTG
433 ATACGAGTTGATTTCTTTCAAAAACAGAA-AATGAAAAACAGAAATTGAAAATACCTCGGCGGTG
* *
91790357 ACCTGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGA-AGAC
497 ACCTGAGACTCAACTCACCACTCGCAATACGAGTTGA---TTT--------T--T--TGACA-AC
* *
91790421 AGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT
546 AAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
*
91790485 TGAAA-AAGTAGAAATT-AAA-A-G-G-T-TCAACCCACCTCTTGCAATATGAGTTGA-TTCTTG
611 TGAAAGAAG--GAAATTAAAATACGTGATGTCAACCCACCTCTCGCAATATGAGTTGATTTCTTG
* * * *
91790542 ACAA-ACAGAAATTGAGATTACCTCA-TCGTG-TC
674 A-AAGACAGAAATTGAAAATACCTCACGCGTGAGC
91790574 CTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGT
91790606 TGAAATTAAA
Statistics
Matches: 661, Mismatches: 53, Indels: 90
0.82 0.07 0.11
Matches are distributed among these distances:
726 18 0.03
727 195 0.30
728 67 0.10
729 25 0.04
730 22 0.03
731 117 0.18
734 1 0.00
735 4 0.01
736 2 0.00
739 1 0.00
740 36 0.05
741 12 0.02
742 37 0.06
743 40 0.06
749 1 0.00
750 5 0.01
751 9 0.01
752 6 0.01
753 1 0.00
754 1 0.00
755 61 0.09
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (707 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGACAGAAATTAAAAAACGA
AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTT
TTTGAAAGACAGAAATTGAAAATACCTCACGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGAC
CTGAGGCTCAACTCACCACTCGCAATACGAGTTGACTTTTTTTACAACAGAAATTGAAATTACCT
CAGCGTGTCCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGACTTTTTTTAAAACAGAAATTG
AAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTCTTTCAAAA
ACAGAAAATGAAAAACAGAAATTGAAAATACCTCGGCGGTGACCTGAGACTCAACTCACCACTCG
CAATACGAGTTGATTTTTTGACAACAAAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTC
ACCTCTCGCAATATGAGCTGATTTTTGAAAGAAGGAAATTAAAATACGTGATGTCAACCCACCTC
TCGCAATATGAGTTGATTTCTTGAAAGACAGAAATTGAAAATACCTCACGCGTGAGC
Done.