genome.fa.s12.2.7.7.80.10.50.1000.287.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Length:  103038859

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   

This is table  287  of  320  ( 38372 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92052163--92052214	6	8.2	6	93	4	68	38	1	46	13	1.54
92052163--92052209	7	7.1	7	92	7	73	40	0	44	14	1.46
92052163--92052262	13	7.5	13	74	15	80	35	2	51	12	1.51
92052350--92052758	30	14.1	30	85	8	553	51	0	10	37	1.40
92052350--92052758	86	4.7	87	88	5	571	51	0	10	37	1.40
92060447--92060507	22	2.8	22	74	18	56	40	0	4	54	1.22
92061793--92061909	23	5.1	23	89	0	153	47	4	26	22	1.70
92066321--92066414	23	4.1	23	85	0	134	47	4	25	22	1.69
92070791--92070815	5	5.0	5	100	0	50	40	0	0	60	0.97
92072498--92072533	12	3.0	12	91	0	63	0	11	50	38	1.38
92072498--92072552	18	3.1	18	81	0	56	1	14	47	36	1.55
92072498--92072533	6	6.0	6	90	0	54	0	11	50	38	1.38
92074699--92074773	33	2.3	33	95	0	132	30	8	16	45	1.75
92075457--92075510	19	2.9	18	76	17	65	12	3	9	74	1.20
92078275--92078308	18	1.9	17	88	5	50	38	0	5	55	1.24
92080810--92080913	51	2.0	53	96	3	194	42	8	7	41	1.64
92083333--92083373	16	2.6	16	75	25	50	21	4	2	70	1.18
92085614--92085638	7	3.6	7	100	0	50	0	12	0	88	0.53
92087430--92087459	5	6.0	5	100	0	60	60	20	0	20	1.37
92095412--92095440	13	2.1	14	93	6	51	3	0	6	89	0.57
92096228--92096298	33	2.2	33	89	0	106	14	25	52	8	1.69
92096316--92096370	27	2.0	27	82	0	65	12	14	56	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92096435--92096463	6	4.8	6	100	0	58	17	0	68	13	1.20
92096488--92096582	39	2.4	39	82	3	120	20	10	53	15	1.71
92096732--92096769	3	12.7	3	100	0	76	0	0	68	31	0.90
92101610--92101696	37	2.3	36	82	13	95	55	4	5	34	1.44
92106948--92106988	20	2.0	20	95	0	73	21	12	24	41	1.87
92109551--92109632	30	2.6	31	79	7	85	40	0	6	53	1.26
92114616--92114650	18	1.9	18	94	0	61	34	14	14	37	1.86
92117857--92117894	9	4.4	9	83	12	53	86	0	2	10	0.66
92118593--92118635	18	2.4	18	96	0	77	46	2	0	51	1.13
92118673--92118742	4	16.8	4	73	19	54	64	5	0	30	1.17
92121180--92121287	54	2.0	54	100	0	216	25	12	18	42	1.86
92123125--92123173	25	2.0	25	100	0	98	44	4	0	51	1.20
92124957--92124998	19	2.1	21	83	12	54	54	4	7	33	1.49
92127883--92127911	15	1.9	15	100	0	58	27	0	13	58	1.36
92140616--92140736	64	1.9	64	84	0	161	30	17	14	38	1.89
92140808--92141063	132	1.9	132	84	1	343	29	18	24	27	1.98
92142865--92142893	15	1.9	15	100	0	58	27	0	13	58	1.36
92144055--92144436	131	2.9	129	75	12	357	27	20	18	33	1.96
92147777--92147814	20	2.0	20	89	5	60	76	2	0	21	0.91
92151169--92151198	15	2.0	15	93	0	51	43	13	10	33	1.77
92151551--92151619	30	2.3	31	82	7	79	46	5	18	28	1.72
92164121--92164769	126	5.1	124	83	6	696	36	20	15	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92168327--92168380	28	1.9	28	85	7	74	38	16	9	35	1.81
92168346--92168408	18	3.5	18	84	0	90	42	17	7	31	1.78
92168344--92168422	36	2.2	36	83	0	104	39	18	8	32	1.82
92168578--92168669	44	2.1	44	87	4	132	33	23	21	20	1.97
92169330--92169370	12	3.5	11	90	6	55	26	17	0	56	1.41
92169876--92169907	16	1.9	17	93	6	57	59	0	0	40	0.97
92169876--92169922	15	3.1	15	82	14	53	55	2	0	42	1.12
92172542--92172600	27	2.3	25	82	8	66	38	6	0	54	1.27
92173704--92173953	85	2.9	87	78	9	237	28	20	22	28	1.99
92174620--92174660	20	2.0	20	90	9	66	9	9	0	80	0.91
92175576--92175616	3	13.7	3	100	0	82	34	31	0	34	1.58
92178007--92178411	46	8.8	46	93	0	614	39	14	24	22	1.91
92179255--92179298	17	2.6	18	82	10	56	34	11	2	52	1.50
92179982--92180045	26	2.4	25	82	10	74	32	4	3	59	1.34
92183326--92183722	108	3.7	107	89	3	611	34	20	17	28	1.95
92183326--92183722	217	1.8	213	92	2	668	34	20	17	28	1.95
92184271--92184312	3	14.0	3	89	0	66	61	0	4	33	1.17
92186577--92186607	16	1.9	16	93	0	53	48	9	6	35	1.62
92200575--92200620	19	2.4	19	86	13	60	56	2	2	39	1.24
92218143--92218190	17	2.8	17	70	0	51	35	0	0	64	0.94
92218381--92218418	20	1.9	20	88	0	58	15	0	7	76	1.01
92219140--92219177	20	2.0	20	89	5	60	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92219117--92219211	49	1.9	49	81	8	113	56	3	0	40	1.15
92219367--92219413	20	2.4	19	80	16	51	31	2	4	61	1.27
92222415--92222463	25	2.0	24	84	4	62	18	6	14	61	1.53
92226438--92226483	23	2.0	23	83	8	58	52	0	6	41	1.27
92228470--92228549	25	3.2	25	62	13	65	33	5	2	58	1.33
92228506--92228531	7	3.7	7	100	0	52	42	11	0	46	1.40
92229204--92229251	14	3.1	15	83	16	71	41	2	0	56	1.11
92230476--92230569	47	2.0	47	89	0	143	35	7	17	40	1.77
92237484--92237560	35	2.2	35	86	11	106	42	10	3	42	1.57
92237730--92237792	31	2.0	31	100	0	126	34	22	6	36	1.80
92242670--92242700	14	2.2	14	94	0	53	54	3	0	41	1.16
92244700--92244789	28	3.3	28	67	13	80	36	15	18	28	1.92
92249763--92249797	18	2.0	18	94	5	63	60	0	0	40	0.97
92251000--92251030	9	3.4	9	90	0	53	58	0	3	38	1.15
92251480--92251536	27	2.1	27	84	12	73	70	1	3	24	1.13
92251659--92251718	31	1.9	31	83	6	77	35	8	10	46	1.67
92259456--92259518	26	2.4	26	76	12	65	50	1	3	44	1.27
92259734--92259775	16	2.6	16	92	3	66	33	16	4	45	1.69
92268281--92268309	15	1.9	15	100	0	58	34	0	20	44	1.52
92268318--92268365	19	2.6	19	86	3	71	35	2	14	47	1.56
92268385--92268469	42	2.2	37	73	18	89	31	4	11	51	1.59
92272265--92272312	19	2.6	19	86	3	71	35	2	14	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92272329--92272417	42	2.1	42	93	0	151	30	5	12	51	1.62
92279579--92279638	22	2.6	23	71	15	61	40	0	6	53	1.27
92279669--92279713	23	2.0	23	83	16	58	46	0	0	53	1.00
92280426--92280467	10	4.0	11	78	12	52	47	0	0	52	1.00
92280429--92280467	20	1.9	21	94	5	71	46	0	0	53	1.00
92281354--92281420	30	2.2	28	78	19	73	70	5	7	16	1.31
92281684--92281862	3	60.3	3	70	13	79	64	1	4	29	1.22
92281771--92281844	31	2.4	32	81	4	98	64	1	4	29	1.20
92281684--92281862	23	8.0	23	67	22	75	64	1	4	29	1.22
92283628--92283807	52	3.6	51	74	11	140	29	23	18	27	1.98
92290798--92290843	19	2.4	19	100	0	92	32	10	21	34	1.88
92290798--92290843	10	4.9	9	79	10	56	32	10	21	34	1.88
92293865--92293905	21	2.0	21	90	0	64	29	21	29	19	1.98
92296429--92296588	52	3.1	52	80	4	196	29	27	18	25	1.98
92298866--92298904	13	3.0	13	92	0	60	41	0	10	48	1.37
92299871--92299946	25	3.0	25	80	7	91	39	2	0	57	1.12
92301297--92301356	32	1.9	32	83	10	79	35	3	3	58	1.31
92301554--92301587	17	1.9	18	88	5	52	47	29	2	20	1.65
92302936--92302984	13	3.6	14	83	10	50	34	4	2	59	1.28
92303074--92303166	3	31.7	3	81	4	109	33	6	1	59	1.30
92303312--92303373	15	4.2	14	75	17	54	27	8	0	64	1.21
92304430--92304501	37	1.9	38	85	2	101	36	11	4	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92306118--92306157	7	5.4	7	85	11	53	40	0	0	60	0.97
92306107--92306172	9	8.0	9	79	17	56	39	0	0	60	0.97
92306137--92306173	17	2.1	17	90	10	56	37	0	0	62	0.96
92306120--92306170	16	3.2	15	77	20	50	35	0	0	64	0.94
92308490--92308678	100	1.9	101	92	1	317	36	16	7	39	1.77
92311437--92311534	52	1.9	49	81	6	115	30	8	6	55	1.54
92311500--92311550	22	2.3	22	80	19	61	35	1	0	62	1.06
92311637--92311740	26	4.0	25	72	7	73	29	11	1	56	1.45
92311613--92311713	52	1.9	54	82	8	127	29	9	1	58	1.42
92311713--92311769	26	2.2	26	81	6	62	26	21	3	49	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320