Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 287 of 320
Found at i:92052174 original size:6 final size:6
Alignment explanation
Indices: 92052163--92052214 Score: 68
Period size: 6 Copynumber: 8.2 Consensus size: 6
92052153 TATTGTTGAT
*
92052163 AATGGG AATGGG AATGGG AAATGGG AAATGGG AAATGGG AATGGG AACGGG
1 AATGGG AATGGG AATGGG -AATGGG -AATGGG -AATGGG AATGGG AATGGG
92052214 A
1 A
92052215 GGAGGGAACG
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
6 24 0.55
7 20 0.45
ACGTcount: A:0.38, C:0.02, G:0.46, T:0.13
Consensus pattern (6 bp):
AATGGG
Found at i:92052187 original size:7 final size:7
Alignment explanation
Indices: 92052163--92052209 Score: 73
Period size: 7 Copynumber: 7.1 Consensus size: 7
92052153 TATTGTTGAT
92052163 AATGGG-
1 AATGGGA
92052169 AATGGG-
1 AATGGGA
92052175 AATGGGA
1 AATGGGA
92052182 AATGGGA
1 AATGGGA
92052189 AATGGGA
1 AATGGGA
92052196 AATGGG-
1 AATGGGA
92052202 AATGGGA
1 AATGGGA
92052209 A
1 A
92052210 CGGGAGGAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 18 0.46
7 21 0.54
ACGTcount: A:0.40, C:0.00, G:0.45, T:0.15
Consensus pattern (7 bp):
AATGGGA
Found at i:92052187 original size:13 final size:13
Alignment explanation
Indices: 92052163--92052262 Score: 80
Period size: 13 Copynumber: 7.5 Consensus size: 13
92052153 TATTGTTGAT
92052163 AATGGG-AATGGG
1 AATGGGAAATGGG
92052175 AATGGGAAATGGG
1 AATGGGAAATGGG
92052188 AAATGGGAAATGGG
1 -AATGGGAAATGGG
*
92052202 AATGGG-AACGGG
1 AATGGGAAATGGG
* *
92052214 AGGA-GGGAACGGTGGA
1 A--ATGGGAA--ATGGG
* *
92052230 AGAGGGGAGATGGG
1 A-ATGGGAAATGGG
92052244 AATGGGAAATGGG
1 AATGGGAAATGGG
92052257 AATGGG
1 AATGGG
92052263 TATTGCATGG
Statistics
Matches: 71, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
12 12 0.17
13 31 0.44
14 19 0.27
15 2 0.03
16 7 0.10
ACGTcount: A:0.35, C:0.02, G:0.51, T:0.12
Consensus pattern (13 bp):
AATGGGAAATGGG
Found at i:92052386 original size:30 final size:30
Alignment explanation
Indices: 92052350--92052758 Score: 553
Period size: 30 Copynumber: 14.1 Consensus size: 30
92052340 TGTATTTAAA
* * *
92052350 ATTTTAAAAATAAAAAAATATATATAATGG
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052380 ATTTTAAAAATAAAAAAATACT-TGTAGTGT
1 ATTTTAAAAATAAAAAAATA-TATGTAGTGT
*
92052410 ATTTT-AAAAT----ATATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052435 ATTTTAAAAAT-AAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* *
92052464 ATTCTAGAAATAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* * * *
92052494 ATTTT-AAAAT--ATATATATATGAATTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
*
92052521 ATTTTAAAAGTAAAAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052551 ATTTTAAAAATAAAAAAAATATATGTAGTGT
1 ATTTTAAAAAT-AAAAAAATATATGTAGTGT
*
92052582 ATTTTAAAAATAAAAAAATATGTGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052612 ATTTTAAAAAT--AAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
*
92052640 ATTTTAAAAATAAAAAAATATGTGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052670 ATTTTAAAAAT--AAAAATATATGTAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052698 ATTTTAAAAATAAAAAAATATA--TAGTGT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
* *
92052726 ATTGTAAAAATAAAAAAATATATGTAGTAT
1 ATTTTAAAAATAAAAAAATATATGTAGTGT
92052756 ATT
1 ATT
92052759 CGGCGTATTC
Statistics
Matches: 337, Mismatches: 25, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.00
25 17 0.05
26 5 0.01
27 18 0.05
28 85 0.25
29 32 0.09
30 148 0.44
31 31 0.09
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (30 bp):
ATTTTAAAAATAAAAAAATATATGTAGTGT
Found at i:92052528 original size:86 final size:87
Alignment explanation
Indices: 92052350--92052758 Score: 571
Period size: 86 Copynumber: 4.7 Consensus size: 87
92052340 TGTATTTAAA
* * *
92052350 ATTTTAAAAATAAAAAAATATATATAATGGATTTTAAAAATAAAAAAATACT-TGTAGTGTATTT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATA-TATGTAGTGTATTT
*
92052414 T-AAAAT--ATATATATGTAGTGT
64 TAAAAATAAAAATATATGTAGTGT
* *
92052435 ATTTTAAAAATAAAAAATATATGTAGTGTATTCTAGAAATAAAAAAATATATGTAGTGTATTTT-
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTA
* * * *
92052499 AAAATATATATATATGAATTGT
66 AAAATAAAAATATATGTAGTGT
*
92052521 ATTTTAAAAGTAAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAAATATATGTAGTGTATTT
1 ATTTTAAAAAT-AAAAAATATATGTAGTGTATTTTAAAAAT-AAAAAAATATATGTAGTGTATTT
*
92052586 TAAAAATAAAAAAATATGTGTAGTGT
64 TAAAAAT--AAAAATATATGTAGTGT
*
92052612 ATTTTAAAAAT-AAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATGTGTAGTGTATTTTA
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTA
92052676 AAAATAAAAATATATGTAGTGT
66 AAAATAAAAATATATGTAGTGT
* * *
92052698 ATTTTAAAAATAAAAAA-ATATATAGTGTATTGTAAAAATAAAAAAATATATGTAGTATATT
1 ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATT
92052759 CGGCGTATTC
Statistics
Matches: 293, Mismatches: 22, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.00
84 51 0.17
85 11 0.04
86 90 0.31
87 32 0.11
88 53 0.18
89 33 0.11
91 22 0.08
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (87 bp):
ATTTTAAAAATAAAAAATATATGTAGTGTATTTTAAAAATAAAAAAATATATGTAGTGTATTTTA
AAAATAAAAATATATGTAGTGT
Found at i:92060498 original size:22 final size:22
Alignment explanation
Indices: 92060447--92060507 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
92060437 TAATAAAAAA
*
92060447 ATAATTTTATATTAATATTTAT
1 ATAATTTTATATTAATATGTAT
*
92060469 ATATTTTTATAATTAA-ATGTA-
1 ATAATTTTAT-ATTAATATGTAT
92060490 AGTAATTTT-TATTGAATA
1 A-TAATTTTATATT-AATA
92060508 ATAAAACGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 3 0.09
21 4 0.12
22 20 0.62
23 5 0.16
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (22 bp):
ATAATTTTATATTAATATGTAT
Found at i:92061819 original size:23 final size:23
Alignment explanation
Indices: 92061793--92061909 Score: 153
Period size: 23 Copynumber: 5.1 Consensus size: 23
92061783 AAGTTAGAAG
92061793 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
92061816 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
92061839 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
92061862 AGTTAAGAGGCTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
92061885 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
92061908 AG
1 AG
92061910 ATACACACAT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 84 1.00
ACGTcount: A:0.47, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:92066347 original size:23 final size:23
Alignment explanation
Indices: 92066321--92066414 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
92066311 AAGTTAGAAG
92066321 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
92066344 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
92066367 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
92066390 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
92066413 AG
1 AG
92066415 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:92070801 original size:5 final size:5
Alignment explanation
Indices: 92070791--92070815 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
92070781 CGTGATAATA
92070791 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
92070816 ATGATAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:92072515 original size:12 final size:12
Alignment explanation
Indices: 92072498--92072533 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
92072488 GTGGGTGTTT
92072498 CTGGTGTTGGTG
1 CTGGTGTTGGTG
*
92072510 CTGGTGCTGGTG
1 CTGGTGTTGGTG
92072522 CTGGTGTTGGTG
1 CTGGTGTTGGTG
92072534 TTGGCCCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.11, G:0.50, T:0.39
Consensus pattern (12 bp):
CTGGTGTTGGTG
Found at i:92072521 original size:18 final size:18
Alignment explanation
Indices: 92072498--92072552 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
92072488 GTGGGTGTTT
* *
92072498 CTGGTGTTGGTGCTGGTG
1 CTGGTGCTGGTGTTGGTG
92072516 CTGGTGCTGGTGTTGGTG
1 CTGGTGCTGGTGTTGGTG
* ** *
92072534 TTGGCCCTGGAGTTGGTG
1 CTGGTGCTGGTGTTGGTG
92072552 C
1 C
92072553 AAGTGGTGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.02, C:0.15, G:0.47, T:0.36
Consensus pattern (18 bp):
CTGGTGCTGGTGTTGGTG
Found at i:92072537 original size:6 final size:6
Alignment explanation
Indices: 92072498--92072533 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
92072488 GTGGGTGTTT
* *
92072498 CTGGTG TTGGTG CTGGTG CTGGTG CTGGTG TTGGTG
1 CTGGTG CTGGTG CTGGTG CTGGTG CTGGTG CTGGTG
92072534 TTGGCCCTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.11, G:0.50, T:0.39
Consensus pattern (6 bp):
CTGGTG
Found at i:92074738 original size:33 final size:33
Alignment explanation
Indices: 92074699--92074773 Score: 132
Period size: 33 Copynumber: 2.3 Consensus size: 33
92074689 AAATGATTTG
92074699 TTTTTTTATGCATTAAGAAGGAAAGTAGTCTAT
1 TTTTTTTATGCATTAAGAAGGAAAGTAGTCTAT
92074732 TTTTTTTATGCATTAAGAAGGAAAGTAGTCTAT
1 TTTTTTTATGCATTAAGAAGGAAAGTAGTCTAT
* *
92074765 CTTTCTTAT
1 TTTTTTTAT
92074774 TTTCTTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (33 bp):
TTTTTTTATGCATTAAGAAGGAAAGTAGTCTAT
Found at i:92075480 original size:18 final size:18
Alignment explanation
Indices: 92075457--92075510 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
92075447 CTGTTGGCTG
92075457 TTTTGTTGTATTATTTAT
1 TTTTGTTGTATTATTTAT
*
92075475 TTTTGTCCTTTATT-TTTAT
1 TTTTGT--TGTATTATTTAT
92075494 TTTTGTTGTTATTATTT
1 TTTTGTTG-TATTATTT
92075511 TTGGCTTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 1 0.03
18 10 0.33
19 14 0.47
20 5 0.17
ACGTcount: A:0.13, C:0.04, G:0.09, T:0.74
Consensus pattern (18 bp):
TTTTGTTGTATTATTTAT
Found at i:92078300 original size:18 final size:17
Alignment explanation
Indices: 92078275--92078308 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92078265 TTAATTCCTA
*
92078275 TAATATTTTTATATATG
1 TAATATTTTTAAATATG
92078292 TAATGATTTTTAAATAT
1 TAAT-ATTTTTAAATAT
92078309 TTTATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
TAATATTTTTAAATATG
Found at i:92080888 original size:51 final size:53
Alignment explanation
Indices: 92080810--92080913 Score: 194
Period size: 51 Copynumber: 2.0 Consensus size: 53
92080800 TTCCATTAAA
92080810 TATATTTTACAAACAATTGAAAGGTTTTTCTTTTTCCAAAATAAAAAATGTAT
1 TATATTTTACAAACAATTGAAAGGTTTTTCTTTTTCCAAAATAAAAAATGTAT
92080863 TATA-TTTA-AAACAATTGAAAGGTTTTTCTTTTTCCAAAATAAAAAATGTAT
1 TATATTTTACAAACAATTGAAAGGTTTTTCTTTTTCCAAAATAAAAAATGTAT
92080914 GAAACACAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
51 43 0.84
52 4 0.08
53 4 0.08
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (53 bp):
TATATTTTACAAACAATTGAAAGGTTTTTCTTTTTCCAAAATAAAAAATGTAT
Found at i:92083370 original size:16 final size:16
Alignment explanation
Indices: 92083333--92083373 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
92083323 ATTCATGGTG
92083333 CTATTTTATTTTTAAT
1 CTATTTTATTTTTAAT
92083349 -TGATTTT-TTTTTATAT
1 CT-ATTTTATTTTTA-AT
92083365 CTATTTTAT
1 CTATTTTAT
92083374 GATTCATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
15 7 0.33
16 12 0.57
17 2 0.10
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (16 bp):
CTATTTTATTTTTAAT
Found at i:92085650 original size:7 final size:7
Alignment explanation
Indices: 92085614--92085638 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92085604 GAGGAATTCT
92085614 TTTTTTC
1 TTTTTTC
92085621 TTTTTTC
1 TTTTTTC
92085628 TTTTTTC
1 TTTTTTC
92085635 TTTT
1 TTTT
92085639 CCTTTTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:92087440 original size:5 final size:5
Alignment explanation
Indices: 92087430--92087459 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
92087420 TTGATGGAGG
92087430 AATCA AATCA AATCA AATCA AATCA AATCA
1 AATCA AATCA AATCA AATCA AATCA AATCA
92087460 TATCCCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AATCA
Found at i:92095441 original size:14 final size:14
Alignment explanation
Indices: 92095412--92095440 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
92095402 TATCTTCAAC
92095412 TTGTATTTTTTTTT
1 TTGTATTTTTTTTT
92095426 TTGT-TTTTTTTTT
1 TTGTATTTTTTTTT
92095439 TT
1 TT
92095441 TTGGGGGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.03, C:0.00, G:0.07, T:0.90
Consensus pattern (14 bp):
TTGTATTTTTTTTT
Found at i:92096310 original size:33 final size:33
Alignment explanation
Indices: 92096228--92096298 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
92096218 ACCTGGAGGA
* * *
92096228 GGTGGAGGAGCCCCCCGCATAGGAGGCGGGGGC
1 GGTGCAGGTGCCCCACGCATAGGAGGCGGGGGC
*
92096261 GGTGCAGGTGCCCCACGCATAGGAGGGGGGGGC
1 GGTGCAGGTGCCCCACGCATAGGAGGCGGGGGC
92096294 GGTGC
1 GGTGC
92096299 TGGTTCTCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.14, C:0.25, G:0.52, T:0.08
Consensus pattern (33 bp):
GGTGCAGGTGCCCCACGCATAGGAGGCGGGGGC
Found at i:92096346 original size:27 final size:27
Alignment explanation
Indices: 92096316--92096370 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
92096306 CCACGAGCAG
* * *
92096316 GTGGAGGTGGTGGGGGTGGAGCTCCAC
1 GTGGAGGAGGAGGAGGTGGAGCTCCAC
* *
92096343 GTGGGGGAGGAGGAGGTGGTGCTCCAC
1 GTGGAGGAGGAGGAGGTGGAGCTCCAC
92096370 G
1 G
92096371 CAAAGGGGGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.13, C:0.15, G:0.56, T:0.16
Consensus pattern (27 bp):
GTGGAGGAGGAGGAGGTGGAGCTCCAC
Found at i:92096446 original size:6 final size:6
Alignment explanation
Indices: 92096435--92096463 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
92096425 CACCGATGGG
92096435 GGAGGT GGAGGT GGAGGT GGAGGT GGAGG
1 GGAGGT GGAGGT GGAGGT GGAGGT GGAGG
92096464 ACCAGGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.69, T:0.14
Consensus pattern (6 bp):
GGAGGT
Found at i:92096532 original size:39 final size:39
Alignment explanation
Indices: 92096488--92096582 Score: 120
Period size: 39 Copynumber: 2.4 Consensus size: 39
92096478 GGAGCAATGA
92096488 AGGTGGAGGTGGGGCACTAGACATCAATG-GCGGTGGAGG
1 AGGTGGAGGTGGGGCACTAGACATCAATGAG-GGTGGAGG
* * * * *
92096527 GGGTGGAGGTGGGGCAGTGGACTTCAATGAGGGTGGTGG
1 AGGTGGAGGTGGGGCACTAGACATCAATGAGGGTGGAGG
*
92096566 AGGTGGAGGAGGGGCAC
1 AGGTGGAGGTGGGGCAC
92096583 CAAACCTAGG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 46 0.98
40 1 0.02
ACGTcount: A:0.20, C:0.11, G:0.54, T:0.16
Consensus pattern (39 bp):
AGGTGGAGGTGGGGCACTAGACATCAATGAGGGTGGAGG
Found at i:92096740 original size:3 final size:3
Alignment explanation
Indices: 92096732--92096769 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
92096722 ATGTCTAGTA
92096732 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
92096770 GGGGGGGCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GGT
Found at i:92101693 original size:40 final size:36
Alignment explanation
Indices: 92101610--92101696 Score: 95
Period size: 37 Copynumber: 2.3 Consensus size: 36
92101600 ACGATTTTAA
* *
92101610 AATATAAATATATGTTTAAAAGTAACATATAATAGAT
1 AATA-AAATATATGTTTAAAACTAAAATATAATAGAT
92101647 AATAAAATATATGGTTTAAAACTAATTAATCATAATA-AT
1 AATAAAATATAT-GTTTAAAACTAA--AAT-ATAATAGAT
92101686 ACATAAAATAT
1 A-ATAAAATAT
92101697 GTACGATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
36 8 0.19
37 15 0.35
39 5 0.12
40 15 0.35
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (36 bp):
AATAAAATATATGTTTAAAACTAAAATATAATAGAT
Found at i:92106977 original size:20 final size:20
Alignment explanation
Indices: 92106948--92106988 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
92106938 TGACATGTCA
92106948 ACTTCCATGGTTAGATGGTT
1 ACTTCCATGGTTAGATGGTT
*
92106968 ACTTCTATGGTTAGATGGTT
1 ACTTCCATGGTTAGATGGTT
92106988 A
1 A
92106989 AAATTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.41
Consensus pattern (20 bp):
ACTTCCATGGTTAGATGGTT
Found at i:92109632 original size:30 final size:31
Alignment explanation
Indices: 92109551--92109632 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 31
92109541 TAATTTAAGC
* * *
92109551 TTATTAGTATTTGTTTATAATAATAATAATGG
1 TTATTAATATTTATTTAT-ATAATAATAATAG
* * *
92109583 TTAATTATTATTTAATTATATTATAATAA-AG
1 TT-ATTAATATTTATTTATATAATAATAATAG
92109614 TTATTAATATTTATTTATA
1 TTATTAATATTTATTTATA
92109633 AATTTTTACT
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
30 15 0.36
31 3 0.07
32 11 0.26
33 13 0.31
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (31 bp):
TTATTAATATTTATTTATATAATAATAATAG
Found at i:92114660 original size:18 final size:18
Alignment explanation
Indices: 92114616--92114650 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
92114606 TAACAGATAT
*
92114616 ACTTAAAATCTATTTGGC
1 ACTTAAAATCTAGTTGGC
92114634 ACTTAAAATCTAGTTGG
1 ACTTAAAATCTAGTTGG
92114651 ACTGTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (18 bp):
ACTTAAAATCTAGTTGGC
Found at i:92117876 original size:10 final size:9
Alignment explanation
Indices: 92117857--92117894 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
92117847 AGCAAGTAGC
*
92117857 AAAAGTAAA
1 AAAAATAAA
92117866 AAAAATAAA
1 AAAAATAAA
92117875 AAAAAT--A
1 AAAAATAAA
92117882 AAAAATAAA
1 AAAAATAAA
92117891 AAAA
1 AAAA
92117895 TTAATAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
7 7 0.27
9 19 0.73
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAAATAAA
Found at i:92118619 original size:18 final size:18
Alignment explanation
Indices: 92118593--92118635 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
92118583 AAAAACTGTT
*
92118593 TTTACATATATTAATAAA
1 TTTATATATATTAATAAA
92118611 TTTATATATATTAATAAA
1 TTTATATATATTAATAAA
92118629 TTTATAT
1 TTTATAT
92118636 TTTAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATATTAATAAA
Found at i:92118680 original size:4 final size:4
Alignment explanation
Indices: 92118673--92118742 Score: 54
Period size: 4 Copynumber: 16.8 Consensus size: 4
92118663 TGATTTATTT
* * *
92118673 ATAA ATAA ATAA ATAA ATCAA ATAA ATAT AT-A ATAA TACTCA AT-T ATAA
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA -A-TAA ATAA ATAA
92118722 ATAA ATAA ATCAA ATTAA ATA
1 ATAA ATAA AT-AA A-TAA ATA
92118743 TATCAATCAA
Statistics
Matches: 54, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
3 4 0.07
4 35 0.65
5 12 0.22
6 3 0.06
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:92121262 original size:54 final size:54
Alignment explanation
Indices: 92121180--92121287 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
92121170 TAATTTGACA
92121180 TGTTTTTTTTACATGCGGTGATATGGCATAGGCATTTTTTATACAATTGAACAC
1 TGTTTTTTTTACATGCGGTGATATGGCATAGGCATTTTTTATACAATTGAACAC
92121234 TGTTTTTTTTACATGCGGTGATATGGCATAGGCATTTTTTATACAATTGAACAC
1 TGTTTTTTTTACATGCGGTGATATGGCATAGGCATTTTTTATACAATTGAACAC
92121288 CAAAGACTGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (54 bp):
TGTTTTTTTTACATGCGGTGATATGGCATAGGCATTTTTTATACAATTGAACAC
Found at i:92123153 original size:25 final size:25
Alignment explanation
Indices: 92123125--92123173 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
92123115 CCACTAAACC
92123125 AAAATTTATTTTAATATAATACTTT
1 AAAATTTATTTTAATATAATACTTT
92123150 AAAATTTATTTTAATATAATACTT
1 AAAATTTATTTTAATATAATACTT
92123174 ACATTTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
AAAATTTATTTTAATATAATACTTT
Found at i:92124997 original size:18 final size:21
Alignment explanation
Indices: 92124957--92124998 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
92124947 ATTGGATTTA
*
92124957 AATAATGATATATTCAAATTG
1 AATAATGATATATACAAATTG
92124978 AATAAT-ATA-ATACAAA-TG
1 AATAATGATATATACAAATTG
92124996 AAT
1 AAT
92124999 TCCAACTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 5 0.25
19 6 0.30
20 3 0.15
21 6 0.30
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (21 bp):
AATAATGATATATACAAATTG
Found at i:92127903 original size:15 final size:15
Alignment explanation
Indices: 92127883--92127911 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92127873 CGTTATGATA
92127883 ATATGTTTTGTATAT
1 ATATGTTTTGTATAT
92127898 ATATGTTTTGTATA
1 ATATGTTTTGTATA
92127912 AAATTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
ATATGTTTTGTATAT
Found at i:92140725 original size:64 final size:64
Alignment explanation
Indices: 92140616--92140736 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
92140606 CATAATCATT
**
92140616 CATTTAGTTAGAAGCACTTGATTCATTTCGATCATAACATTCTAATTATTTGACATAAACACCA
1 CATTTAGTTAGAAGCACTTGATTCATTTCGATCATAACACCCTAATTATTTGACATAAACACCA
** * * ** *
92140680 CATTTAGTTAGGGGCATTTGATTCATTTTGATCATGGCACCCTAATTATTTGGCATA
1 CATTTAGTTAGAAGCACTTGATTCATTTCGATCATAACACCCTAATTATTTGACATA
92140737 CACAGATACA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
CATTTAGTTAGAAGCACTTGATTCATTTCGATCATAACACCCTAATTATTTGACATAAACACCA
Found at i:92141026 original size:132 final size:132
Alignment explanation
Indices: 92140808--92141063 Score: 343
Period size: 132 Copynumber: 1.9 Consensus size: 132
92140798 TAAATTCTAC
* * * *
92140808 AGATCTCGTTTCCCTGAAGTTGCAGTGAAGTAGATCGAAGACGGAAAATCTTGGCTTCCTAAAGT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGGAAAATCTAGGATTCCTAAAGT
* * * * *
92140873 TACAGTGAAGCAGATTTAAGCCACCGGCCTAGCT-CCTTAAAGTTGTAGTGGAGTAGGCTGAAAT
66 TACAGTGAAGCAGATTCAAGCCACCAGCCTAGCTCCCTGAAA-TTGTAGTAGAATAGGCTGAAAT
92140937 TTT
130 TTT
* * ** * *
92140940 AGATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGTATTCCTGAAGT
1 AGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGGAAAATCTAGGATTCCTAAAGT
* *
92141005 TACAGTGAAGCAGATTCAAGCCATCATCCTAGCTCCCTGAAATTGTAGTAGAATAGGCT
66 TACAGTGAAGCAGATTCAAGCCACCAGCCTAGCTCCCTGAAATTGTAGTAGAATAGGCT
92141064 TAATATAGCA
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
132 100 0.94
133 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
AGATCTCGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGGAAAATCTAGGATTCCTAAAGT
TACAGTGAAGCAGATTCAAGCCACCAGCCTAGCTCCCTGAAATTGTAGTAGAATAGGCTGAAATT
TT
Found at i:92142885 original size:15 final size:15
Alignment explanation
Indices: 92142865--92142893 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92142855 CGTTATGATA
92142865 ATATGTTTTGTATAT
1 ATATGTTTTGTATAT
92142880 ATATGTTTTGTATA
1 ATATGTTTTGTATA
92142894 AAATTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
ATATGTTTTGTATAT
Found at i:92144192 original size:131 final size:129
Alignment explanation
Indices: 92144055--92144436 Score: 357
Period size: 131 Copynumber: 2.9 Consensus size: 129
92144045 ATCCCTCCAA
* * **
92144055 AATTTCACCCATGTCTTCTAAAAACCCTTTAAAACGAAGGCAATACTCGGTGTTTGATAATTCAG
1 AATTTCACTCATGT-TTCTAAAAACCCTTTAAAACGAAGGCAAT-CTCGATGTTTGGCAATTCAG
* *
92144120 GAATCATGCCCTATCGTGCTGGGTTGTGGTTTCTCGTTTGTTCAAAACAATCGAACATTCATTTA
64 GAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAACATTCATTT-
92144185 GG
128 GG
* * * * * *
92144187 -TTTTCACTCATGTTTATTAAAAA-CCTTCCAAAACGAAGGCGATCTTAGATGTTTGGCAATT-T
1 AATTTCACTCATGTTT-CTAAAAACCCTT-TAAAACGAAGGCAATC-TCGATGTTTGGCAATTCA
* * * *
92144249 GAGAATCGTGCCCTATCGTGCT-GGTTGCGCATTT-TCGTTCGTTCAAAACAATCGAAGATTCCT
63 G-GAATCATGCCCTATCGTGCTGGGTTGCG-ATTTCTCGTTTGTTCAAAACAATCGAACATTCAT
92144312 TTGG
126 TTGG
* *
92144316 AATTTCACTC-TCGTTTTCTAAAAACTCTTTAAAACGGAA-GAAATGCTCGATGTTTGGCAATTC
1 AATTTCACTCAT-G-TTTCTAAAAACCCTTTAAAAC-GAAGGCAAT-CTCGATGTTTGGCAATTC
* * * * * * *
92144379 GGGGAAT-AGCGCCCTATCGTGCTGCGTTGCAATCTCCCGTTTGTTCAAAATAATCGAA
62 -AGGAATCA-TGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAA
92144437 TATCTCTTTC
Statistics
Matches: 202, Mismatches: 32, Indels: 32
0.76 0.12 0.12
Matches are distributed among these distances:
129 3 0.01
130 80 0.40
131 94 0.47
132 25 0.12
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (129 bp):
AATTTCACTCATGTTTCTAAAAACCCTTTAAAACGAAGGCAATCTCGATGTTTGGCAATTCAGGA
ATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCGAACATTCATTTGG
Found at i:92147810 original size:19 final size:20
Alignment explanation
Indices: 92147777--92147814 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92147767 TATATTAAAT
*
92147777 AAAAAAATTATATTAAAAAC
1 AAAAAAAATATATTAAAAAC
92147797 AAAAAAAATA-ATTAAAAA
1 AAAAAAAATATATTAAAAA
92147815 ATTGAAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAAAATATATTAAAAAC
Found at i:92151192 original size:15 final size:15
Alignment explanation
Indices: 92151169--92151198 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92151159 TATAATATTC
92151169 TCATAATAAATGCAT
1 TCATAATAAATGCAT
*
92151184 TCATGATAAATGCAT
1 TCATAATAAATGCAT
92151199 GCATCTTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (15 bp):
TCATAATAAATGCAT
Found at i:92151585 original size:30 final size:31
Alignment explanation
Indices: 92151551--92151619 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
92151541 TTGTCTAAGA
* *
92151551 GTAAATACT-CAAAATTTGAGGGATTAA-AGT
1 GTAAATA-TACAAAATTTGAAGGATCAATAGT
*
92151581 GTAAATATAGAAAATTTGAAGGATCAATAGT
1 GTAAATATACAAAATTTGAAGGATCAATAGT
*
92151612 GCAAATAT
1 GTAAATAT
92151620 TTCAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 22 0.67
31 10 0.30
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (31 bp):
GTAAATATACAAAATTTGAAGGATCAATAGT
Found at i:92164347 original size:126 final size:124
Alignment explanation
Indices: 92164121--92164769 Score: 696
Period size: 126 Copynumber: 5.1 Consensus size: 124
92164111 ATCGAATTTT
* * * * * * * *
92164121 CAAATACGAAACATTGCCTCATTTTAATTTGAGAAAACATGGACGAAATTTTAAAAGGATATTCT
1 CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCC
* * * *
92164186 GTATTTTAGTCGAATGGAAAATTGAAGCTCAGCACGATTGGGCACGACTCCCCAAACTTC
66 ATATTTTAGTCGAATGAAAAATCGAAGCCCAGCACGATTGGGCACGA-TCCCCAAACTTC
**
92164246 CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAATGTGGATGAAATTTCAAAAAGGATATTC
1 CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAACATGGATGAAATTTC-AAAAGGATATTC
* * * *
92164311 CATATTTTAGTCGAATGGAAAATTGAAGCCCAGCACGATTGGGCACAACTTCCCAAACTTC
65 CATATTTTAGTCGAATGAAAAATCGAAGCCCAGCACGATTGGGCACGA-TCCCCAAACTTC
*
92164372 CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAACGTGGATGAAATTTCAAAAAAGGATATT
1 CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAACATGGATGAAATTTC--AAAAGGATATT
* * * * *
92164437 CTATATTTTAGTCGAATGAAAAAAACGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCC
64 CCATATTTTAGTCGAATG-AAAAATCGAAGCCCAGCACGATTGGGCACGATC-CCCAAACT-TC
* * * * ** *
92164501 CAAATACGACATATTGCCTCATTTTAATTTTTTTAAAAAAACATGGACAAAATTTCCAAAGGATA
1 CAAACACGAAATATTGCCTCGTTTT-A---TTTTAAGAAAACATGGATGAAATTTCAAAAGGATA
* * * *
92164566 TTCCGTATTTTAG-CTGAACGAAAAATCGAAGCCCAGCACGATTGGGCACGATCCCTCGAACTCC
62 TTCCATATTTTAGTC-GAATGAAAAATCGAAGCCCAGCACGATTGGGCACGATCCC-CAAACTTC
* * *
92164630 CAAACACGAAATATTGCCTCGTTTCCA-TTTAAG-AAACATGGATGAAATCTCACAAGGATATTC
1 CAAACACGAAATATTGCCTCGTTT-TATTTTAAGAAAACATGGATGAAATTTCAAAAGGATATTC
* * * * * *
92164693 CCTAGTTCAATTGAATGAAAAAGTCGTAA-CCCAGCACGATTGGGCACGATTTCTCC-AACTTC
65 CATATTTTAGTCGAATGAAAAA-TCG-AAGCCCAGCACGATTGGGCACGA--TCCCCAAACTTC
92164755 CAAACACGAAATATT
1 CAAACACGAAATATT
92164770 TCCTTATGCT
Statistics
Matches: 450, Mismatches: 57, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
124 40 0.09
125 91 0.20
126 122 0.27
127 33 0.07
128 33 0.07
129 48 0.11
130 38 0.08
131 23 0.05
133 22 0.05
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (124 bp):
CAAACACGAAATATTGCCTCGTTTTATTTTAAGAAAACATGGATGAAATTTCAAAAGGATATTCC
ATATTTTAGTCGAATGAAAAATCGAAGCCCAGCACGATTGGGCACGATCCCCAAACTTC
Found at i:92168358 original size:28 final size:28
Alignment explanation
Indices: 92168327--92168380 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
92168317 TTTTCAATAT
* *
92168327 CAATCAATTTATT-AGTATCATTCAGTAA
1 CAATCAA-TTATTCAGTAGCAATCAGTAA
92168355 CAATCAATTATTCAGTAGCAATCAGT
1 CAATCAATTATTCAGTAGCAATCAGT
92168381 TATTCAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (28 bp):
CAATCAATTATTCAGTAGCAATCAGTAA
Found at i:92168369 original size:18 final size:18
Alignment explanation
Indices: 92168346--92168408 Score: 90
Period size: 18 Copynumber: 3.5 Consensus size: 18
92168336 TATTAGTATC
92168346 ATTCAGTAACAATCAATT
1 ATTCAGTAACAATCAATT
* *
92168364 ATTCAGTAGCAATCAGTT
1 ATTCAGTAACAATCAATT
* *
92168382 ATTCAATAACAATCAATC
1 ATTCAGTAACAATCAATT
92168400 ATTCAGTAA
1 ATTCAGTAA
92168409 TAGTCAGTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:92168416 original size:36 final size:36
Alignment explanation
Indices: 92168344--92168422 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
92168334 TTTATTAGTA
* * *
92168344 TCATTCAGTAACAATCAATTATTCAGTAGCAATCAG
1 TCATTCAATAACAATCAATCATTCAGTAACAATCAG
* * *
92168380 TTATTCAATAACAATCAATCATTCAGTAATAGTCAG
1 TCATTCAATAACAATCAATCATTCAGTAACAATCAG
92168416 TCATTCA
1 TCATTCA
92168423 GTGCCTTTAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (36 bp):
TCATTCAATAACAATCAATCATTCAGTAACAATCAG
Found at i:92168647 original size:44 final size:44
Alignment explanation
Indices: 92168578--92168669 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
92168568 CCAAAGTAAC
* *
92168578 AGTAACAGTACGACACACATGGTGCCTCATCGACTCGAA-GTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACT-AAAGGTCGA
**
92168622 AGTAACAGTACGACACTTATAGTGCCTCATCGACTAAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTAAAGGTCGA
92168666 AGTA
1 AGTA
92168670 TCCCCAAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 2 0.05
44 41 0.95
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.21
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTAAAGGTCGA
Found at i:92169370 original size:12 final size:11
Alignment explanation
Indices: 92169330--92169370 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
92169320 TTAATATTTA
92169330 AATTTCTTATTC
1 AATTTC-TATTC
92169342 AATTTCTATTC
1 AATTTCTATTC
*
92169353 AATTTCTACTTT
1 AATTTCTA-TTC
92169365 AATTTC
1 AATTTC
92169371 AATTTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:92169897 original size:16 final size:17
Alignment explanation
Indices: 92169876--92169907 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
92169866 TTATTTATTT
92169876 TATTAATATAA-AATAA
1 TATTAATATAATAATAA
92169892 TATTAATATAATAATA
1 TATTAATATAATAATA
92169908 TTTACTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TATTAATATAATAATAA
Found at i:92169906 original size:14 final size:15
Alignment explanation
Indices: 92169876--92169922 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
92169866 TTATTTATTT
92169876 TATTAATATAAAATAA
1 TATTAATAT-AAATAA
92169892 TATTAATAT-AATAA
1 TATTAATATAAATAA
*
92169906 TATTTACT-TAAATAA
1 TA-TTAATATAAATAA
92169921 TA
1 TA
92169923 AGTAAACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.29
15 11 0.39
16 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
TATTAATATAAATAA
Found at i:92172585 original size:27 final size:25
Alignment explanation
Indices: 92172542--92172600 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
92172532 GTTATATATC
92172542 ATTTT-AAATTAACTTATATATTACTT
1 ATTTTAAAATTAACTTATATA--ACTT
** *
92172568 ATTTTAAAATTATTTTATATACCTT
1 ATTTTAAAATTAACTTATATAACTT
92172593 ATTTTAAA
1 ATTTTAAA
92172601 CCCATTTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 11 0.38
26 5 0.17
27 13 0.45
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTTTAAAATTAACTTATATAACTT
Found at i:92173892 original size:85 final size:87
Alignment explanation
Indices: 92173704--92173953 Score: 237
Period size: 85 Copynumber: 2.9 Consensus size: 87
92173694 AAGCTTACAA
* * *
92173704 ATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAACCATTAACCTTATCTCCCTGAAGATGC
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAAAACA-TAACCTTATCTCCCTGAAGATGC
** *
92173769 AGTGGAGTTGGTTGAAATTACAG
65 AGTGGAGCAGGTTGAAATCACAG
* ** * * *
92173792 ATCTTGTC-TCTCTGAAGTTGCAGTAAAGCAGATC-AAAACA-AACCTTATCTCCTTGAAGTTGT
1 ATCTTATCTTC-CTGAAGTTGCAGTGGAGCAGATCGAAAACATAACCTTATCTCCCTGAAGATGC
92173854 AGTGGAGCAGGTT-AAAGTCACTAG
65 AGTGGAGCAGGTTGAAA-TCAC-AG
* * * *
92173878 -TCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACA-AACCTTA-CCCCCTGAAGTTG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAA--AACATAACCTTATCTCCCTGAAGATG
92173940 CAGTGG-GACAGGTT
64 CAGTGGAG-CAGGTT
92173954 AAAACTACGA
Statistics
Matches: 134, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
84 3 0.02
85 59 0.44
86 7 0.05
87 28 0.21
88 37 0.28
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (87 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATCGAAAACATAACCTTATCTCCCTGAAGATGCA
GTGGAGCAGGTTGAAATCACAG
Found at i:92174645 original size:20 final size:20
Alignment explanation
Indices: 92174620--92174660 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
92174610 GTTACCGCTA
92174620 TTTATTTATTTTT-CTTTCTT
1 TTTATTT-TTTTTACTTTCTT
92174640 TTTATTTTTTTTACTTTCTT
1 TTTATTTTTTTTACTTTCTT
92174660 T
1 T
92174661 CTTTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTATTTTTTTTACTTTCTT
Found at i:92175584 original size:3 final size:3
Alignment explanation
Indices: 92175576--92175616 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
92175566 TTTATTTTTT
92175576 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
92175617 TATTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:92178074 original size:46 final size:46
Alignment explanation
Indices: 92178007--92178411 Score: 614
Period size: 46 Copynumber: 8.8 Consensus size: 46
92177997 GTGTGCTCTT
*
92178007 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
92178053 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
92178099 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
92178145 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*
92178191 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
**
92178237 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * *
92178283 TGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
*** ** * *
92178329 TGACGGGAAAATGAATAAGACCATGGTTGAAAGATACTATGGCAACA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
* * * *
92178376 TGATA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
92178412 TATGACATCA
Statistics
Matches: 338, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 298 0.88
47 40 0.12
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:92179298 original size:17 final size:18
Alignment explanation
Indices: 92179255--92179298 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
92179245 CGTTGTTTTT
* *
92179255 TATTACTATTATCATTAT
1 TATTACTATTACCATTAG
92179273 TA-TACTATTACCATTAG
1 TATTACTATTACCATTAG
92179290 TATTA-TATT
1 TATTACTATT
92179299 TATATTCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.52
Consensus pattern (18 bp):
TATTACTATTACCATTAG
Found at i:92180021 original size:28 final size:25
Alignment explanation
Indices: 92179982--92180045 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
92179972 TTTATTTAAC
*
92179982 ATATTAATTATTTAAAATTTGCTTTAT
1 ATATTATTTATTTAAAA-TTG-TTTAT
*
92180009 ATATTACTTTATTTCAAATTGTTTAT
1 ATATTA-TTTATTTAAAATTGTTTAT
*
92180035 ATTTTATTTAT
1 ATATTATTTAT
92180046 GTTGAATCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 5 0.15
26 10 0.30
27 9 0.27
28 9 0.27
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (25 bp):
ATATTATTTATTTAAAATTGTTTAT
Found at i:92183671 original size:109 final size:107
Alignment explanation
Indices: 92183326--92183722 Score: 611
Period size: 108 Copynumber: 3.7 Consensus size: 107
92183316 ATTTGGTTAG
* * *
92183326 ACGAGAAATCGAAACCCAGCACCTTAGAGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
92183391 TATTTTG-AAA-TTTTAAAAGGATATTTAGCTATTTGGTCGA
66 TATTTTGAAAATTTTTAAAAGGATATTTAGCTATTTGGTCGA
* *
92183431 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCAAATTTCCAAACGCAAAATATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
* *
92183496 TATTTTGAAAATTTTTGAAAAGGATATTAAG-TCATTTGGTGGA
66 TATTTTGAAAATTTTT-AAAAGGATATTTAGCT-ATTTGGTCGA
*
92183539 ACGAGAAATCGAAACCCAGTACCTTGGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
92183604 TATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTAATTGGTCGA
66 TA-TTTTGAAAA-TTTTTAAAAGGATATTTAGCTATTTGGTCGA
* * * * *
92183648 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGCTCCTCGAACTTCCGAACGCAAAATATTGCTT
1 ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
92183713 TATTTTGAAA
66 TATTTTGAAA
92183723 TGTTTTCCTT
Statistics
Matches: 266, Mismatches: 19, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
105 67 0.25
106 3 0.01
107 5 0.02
108 94 0.35
109 91 0.34
110 6 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (107 bp):
ACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
TATTTTGAAAATTTTTAAAAGGATATTTAGCTATTTGGTCGA
Found at i:92183702 original size:217 final size:213
Alignment explanation
Indices: 92183326--92183722 Score: 668
Period size: 217 Copynumber: 1.8 Consensus size: 213
92183316 ATTTGGTTAG
92183326 ACGAGAAATCGAAACCCAGCACCTTAGAGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGCACCTTAGAGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCT
*
92183391 TATTTTGAAATTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTT
66 TATTTTGAAATTTTAAAAGGATATTTAGCTAATTGGTCGAACGAGAAATCGAAACCCAGTACCTT
* *
92183456 AGGGCACGTTCCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAAAGGAT
131 AGGGCACGCTCCTCAAACTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAAAGGAT
92183521 ATTAAGTCATTTGGTGGA
196 ATTAAGTCATTTGGTGGA
* * * *
92183539 ACGAGAAATCGAAACCCAGTACCTTGGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCCT
1 ACGAGAAATCGAAACCCAGCACCTTAGAGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCT
92183604 TATTTTTGAAAAGTTTTTAAAAGGATATTTAGCTAATTGGTCGAACGAGAAATCGAAACCCAGTA
66 TA-TTTTG-AAA--TTTTAAAAGGATATTTAGCTAATTGGTCGAACGAGAAATCGAAACCCAGTA
* * *
92183669 CCTTAGGGCACGCTCCTCGAACTTCCGAACGCAAAATATTGCTTTATTTTGAAA
127 CCTTAGGGCACGCTCCTCAAACTTCCAAACGCAAAATATTGCCTTATTTTGAAA
92183723 TGTTTTCCTT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
213 63 0.37
214 5 0.03
215 3 0.02
217 99 0.58
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (213 bp):
ACGAGAAATCGAAACCCAGCACCTTAGAGCACATTCCTCGAATTTCCAAACGCAAAACATTGCCT
TATTTTGAAATTTTAAAAGGATATTTAGCTAATTGGTCGAACGAGAAATCGAAACCCAGTACCTT
AGGGCACGCTCCTCAAACTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAAAAGGAT
ATTAAGTCATTTGGTGGA
Found at i:92184279 original size:3 final size:3
Alignment explanation
Indices: 92184271--92184312 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
92184261 ATATAAAAGC
* *
92184271 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
92184313 GTCAACTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92186598 original size:16 final size:16
Alignment explanation
Indices: 92186577--92186607 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92186567 TATGTTAGAG
92186577 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
92186593 CATATATATTTGAAA
1 CATATAAATTTGAAA
92186608 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:92200599 original size:19 final size:19
Alignment explanation
Indices: 92200575--92200620 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
92200565 TAAAAATGTT
92200575 ATTAAATT-TATTATAAA-AA
1 ATTAAATTCTA-TA-AAAGAA
92200594 ATTAAATTCTATAAAAGAA
1 ATTAAATTCTATAAAAGAA
92200613 ATTAAATT
1 ATTAAATT
92200621 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.12
19 20 0.80
20 2 0.08
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAAATTCTATAAAAGAA
Found at i:92218165 original size:17 final size:17
Alignment explanation
Indices: 92218143--92218190 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
92218133 CCCGGCCCAA
92218143 TTTTAATATTAAATTAT
1 TTTTAATATTAAATTAT
* ***
92218160 TTTTAAAATTTTTTTAT
1 TTTTAATATTAAATTAT
*
92218177 TTTTAATTTTAAAT
1 TTTTAATATTAAAT
92218191 AACTTTAGTA
Statistics
Matches: 22, Mismatches: 9, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAATATTAAATTAT
Found at i:92218410 original size:20 final size:20
Alignment explanation
Indices: 92218381--92218418 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
92218371 TCTCATTTTT
* *
92218381 TATTTGTTTTTTTGTTTTAA
1 TATTTATTTTTATGTTTTAA
92218401 TATTTATTTTTATGTTTT
1 TATTTATTTTTATGTTTT
92218419 TAAATGTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:92219174 original size:19 final size:20
Alignment explanation
Indices: 92219140--92219177 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
92219130 TAAAAATCAA
92219140 TAAAAATATAATAATTTATT
1 TAAAAATATAATAATTTATT
*
92219160 TAAAAATATTA-AATTTAT
1 TAAAAATATAATAATTTAT
92219178 CAAAACTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAAAATATAATAATTTATT
Found at i:92219210 original size:49 final size:49
Alignment explanation
Indices: 92219117--92219211 Score: 113
Period size: 49 Copynumber: 1.9 Consensus size: 49
92219107 TACAAACAAT
* * *
92219117 TATTAAATTTTATTAAAAATCAATAAAAATATAATAATTTATTTAAAAA
1 TATTAAATTTTATCAAAAATCAATAAAAATATAAAAATTAATTTAAAAA
* *
92219166 TATTAAA-TTTATCAAAACTTAAT-AAAATATTAAAAAATTAATTTAA
1 TATTAAATTTTATCAAAAATCAATAAAAATA-T-AAAAATTAATTTAA
92219212 TTTGAAAGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
47 6 0.15
48 14 0.36
49 19 0.49
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (49 bp):
TATTAAATTTTATCAAAAATCAATAAAAATATAAAAATTAATTTAAAAA
Found at i:92219395 original size:20 final size:19
Alignment explanation
Indices: 92219367--92219413 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
92219357 ATATTTATTG
92219367 TAATTTTAAATG-ATTTTTA
1 TAATTTT-AATGTATTTTTA
*
92219386 TAATTCTTAATGTTTTTTTA
1 TAATT-TTAATGTATTTTTA
92219406 TAAATTTT
1 T-AATTTT
92219414 TATAATGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 9 0.38
20 11 0.46
21 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (19 bp):
TAATTTTAATGTATTTTTA
Found at i:92222444 original size:24 final size:24
Alignment explanation
Indices: 92222415--92222463 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
92222405 TTTTAACATG
*
92222415 TTTTTTATATTATTCGTTAGTTAGA
1 TTTTTCATATTATTCGTT-GTTAGA
* *
92222440 TTTTTCATGTTTTTCGTTGTTAGA
1 TTTTTCATATTATTCGTTGTTAGA
92222464 CATTTAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.18, C:0.06, G:0.14, T:0.61
Consensus pattern (24 bp):
TTTTTCATATTATTCGTTGTTAGA
Found at i:92226464 original size:23 final size:23
Alignment explanation
Indices: 92226438--92226483 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
92226428 TATTTAGATT
* *
92226438 ATTTGATAA-ATATAATTTTTAAA
1 ATTTGA-AAGATAAAATATTTAAA
92226461 ATTTGAAAGATAAAATATTTAAA
1 ATTTGAAAGATAAAATATTTAAA
92226484 GGATAATACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
ATTTGAAAGATAAAATATTTAAA
Found at i:92228499 original size:25 final size:25
Alignment explanation
Indices: 92228470--92228549 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
92228460 AACAATTTAC
92228470 AATTTACAATTTTTTTTGTAATTTT
1 AATTTACAATTTTTTTTGTAATTTT
* *** ** *
92228495 AATTT--TATATAAATTTACAATTTAC
1 AATTTACAAT-TTTTTTTGTAATTT-T
92228520 AATTTACAATTTTTTTTGTAATTTT
1 AATTTACAATTTTTTTTGTAATTTT
92228545 AATTT
1 AATTT
92228550 TATATGAAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 8
0.63 0.24 0.14
Matches are distributed among these distances:
23 2 0.05
24 9 0.24
25 15 0.41
26 9 0.24
27 2 0.05
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.59
Consensus pattern (25 bp):
AATTTACAATTTTTTTTGTAATTTT
Found at i:92228518 original size:7 final size:7
Alignment explanation
Indices: 92228506--92228531 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
92228496 ATTTTATATA
92228506 AATTTAC
1 AATTTAC
92228513 AATTTAC
1 AATTTAC
92228520 AATTTAC
1 AATTTAC
92228527 AATTT
1 AATTT
92228532 TTTTTGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.46
Consensus pattern (7 bp):
AATTTAC
Found at i:92229230 original size:17 final size:15
Alignment explanation
Indices: 92229204--92229251 Score: 71
Period size: 14 Copynumber: 3.1 Consensus size: 15
92229194 AAAATAAAAT
92229204 AATTTTTATTATATA
1 AATTTTTATTATATA
92229219 AATTCATTTATTATAT-
1 AATT--TTTATTATATA
92229235 AATTTTTATTATATA
1 AATTTTTATTATATA
92229250 AA
1 AA
92229252 ATTGTTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.33
15 6 0.20
16 4 0.13
17 10 0.33
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTTTTATTATATA
Found at i:92230528 original size:47 final size:47
Alignment explanation
Indices: 92230476--92230569 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
92230466 TTATAATAAT
* *
92230476 TTATTTATTTTAACCGAATAGATTAATTGAAGTGATGAACTGTTAGA
1 TTATTTATTCTAACCGAATAGATTAATTGAAGTAATGAACTGTTAGA
* * *
92230523 TTATTTATTCTAACCGGATAGATTAATTGAATTAATGGACTGTTAGA
1 TTATTTATTCTAACCGAATAGATTAATTGAAGTAATGAACTGTTAGA
92230570 ATCTATCTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (47 bp):
TTATTTATTCTAACCGAATAGATTAATTGAAGTAATGAACTGTTAGA
Found at i:92237529 original size:35 final size:35
Alignment explanation
Indices: 92237484--92237560 Score: 106
Period size: 35 Copynumber: 2.2 Consensus size: 35
92237474 TTATTTTTAA
92237484 TATC-AATTTTTATAAACTTGTTACAA-AAAATTTC
1 TATCAAATTTTTATAAACTTGTTA-AAGAAAATTTC
*
92237518 TATCAAATTTTTATAAATTTGTTAAAGAAAATTTC
1 TATCAAATTTTTATAAACTTGTTAAAGAAAATTTC
92237553 -ACTCAAAT
1 TA-TCAAAT
92237561 CGTGAGCATG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
34 7 0.18
35 32 0.82
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (35 bp):
TATCAAATTTTTATAAACTTGTTAAAGAAAATTTC
Found at i:92237768 original size:31 final size:31
Alignment explanation
Indices: 92237730--92237792 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
92237720 TCCTTTTCAG
92237730 TAATAATTTGGCTAACCCACTTAACCTAATT
1 TAATAATTTGGCTAACCCACTTAACCTAATT
92237761 TAATAATTTGGCTAACCCACTTAACCTAATT
1 TAATAATTTGGCTAACCCACTTAACCTAATT
92237792 T
1 T
92237793 CATCAATGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.37
Consensus pattern (31 bp):
TAATAATTTGGCTAACCCACTTAACCTAATT
Found at i:92242698 original size:13 final size:14
Alignment explanation
Indices: 92242670--92242700 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
92242660 ACTCTAGAAA
*
92242670 TTAAAAAAATATTT
1 TTAAAAAAACATTT
92242684 TTAAAAAAACATTT
1 TTAAAAAAACATTT
92242698 TTA
1 TTA
92242701 GCTCTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
TTAAAAAAACATTT
Found at i:92244789 original size:28 final size:28
Alignment explanation
Indices: 92244700--92244789 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 28
92244690 AAGTCTGGAG
92244700 GGACTATC-TAAATGTAGAAGTCCATTA
1 GGACTATCTTAAATGTAGAAGTCCATTA
* * * * *
92244727 GGCCTA--TAAAATATGGAAGTCCGTTA
1 GGACTATCTTAAATGTAGAAGTCCATTA
* *
92244753 AGA-TAATCTTAAATGTAGAAGTCCATCA
1 GGACT-ATCTTAAATGTAGAAGTCCATTA
92244781 GGACTATCT
1 GGACTATCT
92244790 AATGTGGAAA
Statistics
Matches: 45, Mismatches: 13, Indels: 9
0.67 0.19 0.13
Matches are distributed among these distances:
25 1 0.02
26 17 0.38
27 5 0.11
28 21 0.47
29 1 0.02
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (28 bp):
GGACTATCTTAAATGTAGAAGTCCATTA
Found at i:92249807 original size:17 final size:18
Alignment explanation
Indices: 92249763--92249797 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
92249753 TAATATTATT
92249763 AAATAATTATAAATTTAA
1 AAATAATTATAAATTTAA
92249781 AAATAATTAT-AATTTAA
1 AAATAATTATAAATTTAA
92249798 TAAAATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATAATTATAAATTTAA
Found at i:92251030 original size:9 final size:9
Alignment explanation
Indices: 92251000--92251030 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
92250990 TTATTAATTT
92251000 AAAATTTTA
1 AAAATTTTA
*
92251009 AAGATTTTA
1 AAAATTTTA
92251018 AAAATTTTA
1 AAAATTTTA
92251027 AAAA
1 AAAA
92251031 ACTGAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:92251510 original size:27 final size:27
Alignment explanation
Indices: 92251480--92251536 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
92251470 ATTAATGATT
92251480 TAAAAATT-ATAAAATATTCAA-AAAAAA
1 TAAAAATTAATAAAA-ATT-AAGAAAAAA
*
92251507 TAAAAGTTAATAAAAATTAAGAAAAAA
1 TAAAAATTAATAAAAATTAAGAAAAAA
92251534 TAA
1 TAA
92251537 CATGAAGTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 19 0.70
28 6 0.22
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (27 bp):
TAAAAATTAATAAAAATTAAGAAAAAA
Found at i:92251717 original size:31 final size:31
Alignment explanation
Indices: 92251659--92251718 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
92251649 ATTAGGTAGT
**
92251659 AAAGTTTTCATTTAAGTTATTGAACTATTTA
1 AAAGTTTTCATTTAAGCCATTGAACTATTTA
*
92251690 AAAGTTTTTATTTAAGCCATT-AGACTATT
1 AAAGTTTTCATTTAAGCCATTGA-ACTATT
92251719 AAGTTTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.47
Consensus pattern (31 bp):
AAAGTTTTCATTTAAGCCATTGAACTATTTA
Found at i:92259517 original size:26 final size:26
Alignment explanation
Indices: 92259456--92259518 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
92259446 ATTTTTTAAC
92259456 TTATAATAAATAATAATTATATATAAA
1 TTAT-ATAAATAATAATTATATATAAA
** * *
92259483 TTA-ATTAAATAATTGTTATGTCTAAA
1 TTATA-TAAATAATAATTATATATAAA
92259509 TTATATAAAT
1 TTATATAAAT
92259519 TTAACTTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
25 1 0.03
26 25 0.83
27 4 0.13
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (26 bp):
TTATATAAATAATAATTATATATAAA
Found at i:92259758 original size:16 final size:16
Alignment explanation
Indices: 92259734--92259775 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
92259724 TATTATTATT
*
92259734 TTCCCTAAATTATATG
1 TTCCTTAAATTATATG
92259750 TTCCTTAAATTATATG
1 TTCCTTAAATTATATG
92259766 TTCCATTAAA
1 TTCC-TTAAA
92259776 AAATAATCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.33, C:0.17, G:0.05, T:0.45
Consensus pattern (16 bp):
TTCCTTAAATTATATG
Found at i:92268301 original size:15 final size:15
Alignment explanation
Indices: 92268281--92268309 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92268271 CCAGTATATA
92268281 GTTGAAATATGTATT
1 GTTGAAATATGTATT
92268296 GTTGAAATATGTAT
1 GTTGAAATATGTAT
92268310 ATATATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (15 bp):
GTTGAAATATGTATT
Found at i:92268364 original size:19 final size:19
Alignment explanation
Indices: 92268318--92268365 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
92268308 ATATATATTT
92268318 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
92268336 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
92268355 TAAGTTTTATT
1 TAAATTTTATT
92268366 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:92268426 original size:37 final size:37
Alignment explanation
Indices: 92268385--92268469 Score: 89
Period size: 42 Copynumber: 2.2 Consensus size: 37
92268375 GGAATTTTTT
*
92268385 TATTTTATCTTTTAGTAATTTATTAGAATAAGGAAAC
1 TATTTTATATTTTAGTAATTTATTAGAATAAGGAAAC
* * *
92268422 TATTTTCTTTTTTATTTTAGTAGTTTATTAGAATAAGGGAAC
1 TA-----TTTTATATTTTAGTAATTTATTAGAATAAGGAAAC
92268464 TATTTT
1 TATTTT
92268470 CCCAATTAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
37 6 0.15
42 33 0.85
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.52
Consensus pattern (37 bp):
TATTTTATATTTTAGTAATTTATTAGAATAAGGAAAC
Found at i:92272311 original size:19 final size:19
Alignment explanation
Indices: 92272265--92272312 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
92272255 ATATATATTT
92272265 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
92272283 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
92272302 TAAGTTTTATT
1 TAAATTTTATT
92272313 CATATTCTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:92272381 original size:42 final size:42
Alignment explanation
Indices: 92272329--92272417 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
92272319 CTAGAAATTT
* *
92272329 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
*
92272371 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
92272413 TTTTC
1 TTTTC
92272418 CACATTAGGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.06, G:0.12, T:0.52
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:92279638 original size:24 final size:23
Alignment explanation
Indices: 92279579--92279638 Score: 61
Period size: 22 Copynumber: 2.6 Consensus size: 23
92279569 GATTTATTTT
*
92279579 ATTATTTTTGAATATTATTTTATA
1 ATTATTTTTGAA-AATATTTTATA
* *
92279603 A--ATGTTTAAAAATATTTTGATA
1 ATTATTTTTGAAAATATTTT-ATA
92279625 ATTATTTTTGAAAA
1 ATTATTTTTGAAAA
92279639 ATGATATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
21 7 0.25
22 11 0.39
24 10 0.36
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
ATTATTTTTGAAAATATTTTATA
Found at i:92279712 original size:23 final size:23
Alignment explanation
Indices: 92279669--92279713 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
92279659 TTAAATTAAT
92279669 TTTATTATTTTAAATATAAAATA
1 TTTATTATTTTAAATATAAAATA
92279692 TTTATT-TTTATATAATA-AAAAT
1 TTTATTATTT-TA-AATATAAAAT
92279714 TAAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 3 0.15
23 13 0.65
24 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTATTATTTTAAATATAAAATA
Found at i:92280442 original size:11 final size:11
Alignment explanation
Indices: 92280426--92280467 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
92280416 ATATTATAAA
92280426 ATATAAAATTT
1 ATATAAAATTT
92280437 ATAT-AAATTT
1 ATATAAAATTT
*
92280447 -TTTAAAATTT
1 ATATAAAATTT
*
92280457 ATATAATATTT
1 ATATAAAATTT
92280468 GTCGAAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 2 0.08
10 12 0.46
11 12 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATAAAATTT
Found at i:92280454 original size:20 final size:21
Alignment explanation
Indices: 92280429--92280467 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
92280419 TTATAAAATA
92280429 TAAAATTTATATAA-ATTTTT
1 TAAAATTTATATAATATTTTT
92280449 TAAAATTTATATAATATTT
1 TAAAATTTATATAATATTT
92280468 GTCGAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TAAAATTTATATAATATTTTT
Found at i:92281420 original size:30 final size:28
Alignment explanation
Indices: 92281354--92281420 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 28
92281344 AATACAAAGG
*
92281354 AGAAAAATAGTATAAAATAAAATAAATC
1 AGAAAAATAGAATAAAATAAAATAAATC
92281382 AGCCAAAAATAGAAATAAAAATAATAATAAA-C
1 AG--AAAAATAG-AAT-AAAATAA-AATAAATC
92281414 AGAAAAA
1 AGAAAAA
92281421 ACTAAATCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
28 2 0.06
30 13 0.39
31 2 0.06
32 10 0.30
33 6 0.18
ACGTcount: A:0.70, C:0.06, G:0.07, T:0.16
Consensus pattern (28 bp):
AGAAAAATAGAATAAAATAAAATAAATC
Found at i:92281692 original size:3 final size:3
Alignment explanation
Indices: 92281684--92281862 Score: 79
Period size: 3 Copynumber: 60.3 Consensus size: 3
92281674 TAGTACCATG
* * * * * *
92281684 ATA ATA ATA AAA ATA AAA ATA ATA A-A ATA ATA AAA ATA ACA GT- ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
92281730 TTA CTA ATA ATA ATA ATA ATAA ATAA ATAA ATA ATG GTA GTA A-A TATA
1 ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA ATA ATA ATA -ATA
* * *
92281778 TATA A-A ATA ATA ATA ACA GTA ATA A-A ATA A-A TGTA AT- ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * *
92281821 ATA ATA AGTA ATA A-A AT- ATA ATA ATA AAA ATA TTA AAA ATA A
1 ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
92281863 CACTCTCCGC
Statistics
Matches: 133, Mismatches: 30, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
2 15 0.11
3 98 0.74
4 20 0.15
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:92281806 original size:31 final size:32
Alignment explanation
Indices: 92281771--92281844 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 32
92281761 TAATGGTAGT
*
92281771 AAATATATATAAAATAATAATAA-CAGTAATA
1 AAATATATATAAAATAATAATAATAAGTAATA
* * *
92281802 AAATAAATGTAATATAATAATAATAAGTAATA
1 AAATATATATAAAATAATAATAATAAGTAATA
92281834 AAATATA-ATAA
1 AAATATATATAA
92281845 TAAAAATATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
31 23 0.64
32 13 0.36
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (32 bp):
AAATATATATAAAATAATAATAATAAGTAATA
Found at i:92281859 original size:23 final size:23
Alignment explanation
Indices: 92281684--92281862 Score: 75
Period size: 23 Copynumber: 8.0 Consensus size: 23
92281674 TAGTACCATG
92281684 ATAATAATAAA-AATAAAA-ATA
1 ATAATAATAAATAATAAAATATA
* *
92281705 ATAAAATAATAAA-AATAACAGTATG
1 AT--AATAATAAATAATAA-AATATA
* *
92281730 TTACTAAT-AATAATAATAATA-A
1 ATAATAATAAATAATAA-AATATA
92281752 AT-A-AATAAATAATGGTAGTAAATATA
1 ATAATAATAAATAA---TA--AAATATA
* *
92281778 TATAA-AAT-AATAATAACA-GTA
1 -ATAATAATAAATAATAAAATATA
*
92281799 ATAA-AATAAAT-GT--AATATA
1 ATAATAATAAATAATAAAATATA
*
92281818 ATAATAATAAGTAATAAAATATA
1 ATAATAATAAATAATAAAATATA
*
92281841 ATAATAA-AAATATTAAAA-ATA
1 ATAATAATAAATAATAAAATATA
92281862 A
1 A
92281863 CACTCTCCGC
Statistics
Matches: 120, Mismatches: 18, Indels: 40
0.67 0.10 0.22
Matches are distributed among these distances:
18 1 0.01
19 6 0.05
20 17 0.14
21 17 0.14
22 14 0.12
23 40 0.33
24 5 0.04
25 7 0.06
26 2 0.02
27 7 0.06
28 4 0.03
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (23 bp):
ATAATAATAAATAATAAAATATA
Found at i:92283804 original size:52 final size:51
Alignment explanation
Indices: 92283628--92283807 Score: 140
Period size: 52 Copynumber: 3.6 Consensus size: 51
92283618 TAGCCCTGCC
* * *
92283628 ATGGTCTTACACGG-ATCACATAT--CAT-AC-CGATGCCATATCCCGGAT
1 ATGGTCTTATACGGAATCACGTATCACATCACACGATGCCATAGCCCGGAT
* * * *
92283674 ATGGTCTTATACAGAATCACATAATCACATCACACTGATGCCATAG-CCAGTT
1 ATGGTCTTATACGGAATCACGT-ATCACATCACAC-GATGCCATAGCCCGGAT
* * *** *
92283726 ATGGTCTTATACGGGGAT-ACGAATCACATGGTATCGATGCCATAGCCCGGCT
1 ATGGTCTTATAC-GGAATCACGTATCACATCACA-CGATGCCATAGCCCGGAT
* *
92283778 ATGGTCTTATATGGAATCATGTATCACATC
1 ATGGTCTTATACGGAATCACGTATCACATC
92283808 TTTTCCGTCA
Statistics
Matches: 104, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
46 12 0.12
47 7 0.07
48 2 0.02
50 3 0.03
51 24 0.23
52 44 0.42
53 12 0.12
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (51 bp):
ATGGTCTTATACGGAATCACGTATCACATCACACGATGCCATAGCCCGGAT
Found at i:92290822 original size:19 final size:19
Alignment explanation
Indices: 92290798--92290843 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
92290788 AACACACAGA
92290798 AGTAAGCTTATTGAAGCTT
1 AGTAAGCTTATTGAAGCTT
92290817 AGTAAGCTTATTGAAGCTT
1 AGTAAGCTTATTGAAGCTT
92290836 AGTAAGCT
1 AGTAAGCT
92290844 CTTAGGCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (19 bp):
AGTAAGCTTATTGAAGCTT
Found at i:92290825 original size:9 final size:9
Alignment explanation
Indices: 92290798--92290843 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
92290788 AACACACAGA
92290798 AGTAAGCTT
1 AGTAAGCTT
*
92290807 ATTGAAGCTT
1 AGT-AAGCTT
92290817 AGTAAGCTT
1 AGTAAGCTT
*
92290826 ATTGAAGCTT
1 AGT-AAGCTT
92290836 AGTAAGCT
1 AGTAAGCT
92290844 CTTAGGCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.35
Consensus pattern (9 bp):
AGTAAGCTT
Found at i:92293891 original size:21 final size:21
Alignment explanation
Indices: 92293865--92293905 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
92293855 AGACGAGCGA
* *
92293865 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
92293886 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
92293906 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:92296585 original size:52 final size:52
Alignment explanation
Indices: 92296429--92296588 Score: 196
Period size: 52 Copynumber: 3.1 Consensus size: 52
92296419 CGGACCACAT
* * *
92296429 ATCATACCGATGCCATATCCCGGATATGGTCTTATACGGAATCACATAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGT-ATCAC
* * * *
92296482 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGCGAT-ACGAATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGG-AATCACGTATCAC
** * *
92296534 ATGGTACCGATGCCATAGCCCGGCTATAGTCTTATACGGAATCATGTATCAC
1 ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCAC
92296586 ATC
1 ATC
92296589 TTTTCCGTCA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
51 2 0.02
52 48 0.54
53 37 0.42
54 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (52 bp):
ATCATACCGATGCCATAGCCCGGCTATGGTCTTATACGGAATCACGTATCAC
Found at i:92298884 original size:13 final size:13
Alignment explanation
Indices: 92298866--92298904 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
92298856 CCAAATTGTA
*
92298866 ATTTTAGTAAAGT
1 ATTTTAGTAAAAT
92298879 ATTTTAGTAAAAT
1 ATTTTAGTAAAAT
*
92298892 ATTTTTGTAAAAT
1 ATTTTAGTAAAAT
92298905 CGAGAGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (13 bp):
ATTTTAGTAAAAT
Found at i:92299905 original size:25 final size:25
Alignment explanation
Indices: 92299871--92299946 Score: 91
Period size: 25 Copynumber: 3.0 Consensus size: 25
92299861 ATTTTTTTAT
92299871 ATTTTATATTTTAAATAATTTAAATA
1 ATTTT-TATTTTAAATAATTTAAATA
** *
92299897 ATTTTTATTTTTCATAATTTATATA
1 ATTTTTATTTTAAATAATTTAAATA
92299922 ATTTTTATTTTTAAA-AACTTTAAAT
1 ATTTTTA-TTTTAAATAA-TTTAAAT
92299947 TTTATTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
25 26 0.62
26 16 0.38
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTTATTTTAAATAATTTAAATA
Found at i:92301332 original size:31 final size:32
Alignment explanation
Indices: 92301297--92301356 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
92301287 TTTTTTTAAA
92301297 ATTATTTAATA-AT-ATTTTAATAATTTTTCGT
1 ATTA-TTAATACATAATTTTAATAATTTTTCGT
* *
92301328 ATTATTGATACATAATTTTAATATTTTTT
1 ATTATTAATACATAATTTTAATAATTTTT
92301357 TACCTTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 6 0.24
32 14 0.56
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (32 bp):
ATTATTAATACATAATTTTAATAATTTTTCGT
Found at i:92301576 original size:17 final size:18
Alignment explanation
Indices: 92301554--92301587 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
92301544 AAATGAACCC
*
92301554 AAATTAGCCC-AACTACT
1 AAATTAACCCAAACTACT
92301571 AAATTAACCCAAACTAC
1 AAATTAACCCAAACTAC
92301588 CTACTCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (18 bp):
AAATTAACCCAAACTACT
Found at i:92302981 original size:13 final size:14
Alignment explanation
Indices: 92302936--92302984 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
92302926 ACTTATTACT
92302936 TTATTAT-TAATTAA
1 TTATTATCT-ATTAA
*
92302950 TTTAGTAT-TATTAA
1 -TTATTATCTATTAA
92302964 TTATTATCTATT-A
1 TTATTATCTATTAA
92302977 TTATTATC
1 TTATTATC
92302985 CTTATTAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 15 0.48
14 9 0.29
15 7 0.23
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (14 bp):
TTATTATCTATTAA
Found at i:92303080 original size:3 final size:3
Alignment explanation
Indices: 92303074--92303166 Score: 109
Period size: 3 Copynumber: 31.7 Consensus size: 3
92303064 TTGTTGTGTC
92303074 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
92303122 ACT ATC ACT A-T ATT GTT ATT ATT ACT ATC A-T ATT ATC ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
92303167 ACTATTTTTA
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
2 3 0.04
3 72 0.96
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:92303364 original size:15 final size:14
Alignment explanation
Indices: 92303312--92303373 Score: 54
Period size: 15 Copynumber: 4.2 Consensus size: 14
92303302 TATTCGTTAG
*
92303312 TATCATTATTAATTT
1 TATCATTATT-TTTT
*
92303327 TATCTTTATTTTCTT
1 TATCATTATTTT-TT
92303342 TA-CAATTATTTTTAT
1 TATC-ATTATTTTT-T
*
92303357 TATCATTATTTATT
1 TATCATTATTTTTT
92303371 TAT
1 TAT
92303374 TTATTTATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
14 7 0.18
15 31 0.79
16 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (14 bp):
TATCATTATTTTTT
Found at i:92304501 original size:37 final size:38
Alignment explanation
Indices: 92304430--92304501 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 38
92304420 CTTTAGTAGA
* *
92304430 ATTTAACCATTTTTTTATATATTTAAATTGAAACTAAT
1 ATTTAACCATTCTTTTATATATTTAAATTCAAACTAAT
**
92304468 ATTTAACCA-TCTTTTATATATTTGGATTCAAACT
1 ATTTAACCATTCTTTTATATATTTAAATTCAAACT
92304502 TCAAAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 21 0.70
38 9 0.30
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (38 bp):
ATTTAACCATTCTTTTATATATTTAAATTCAAACTAAT
Found at i:92306128 original size:7 final size:7
Alignment explanation
Indices: 92306118--92306157 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
92306108 AATTTTTAAA
92306118 AATTTAT
1 AATTTAT
92306125 AATTTAT
1 AATTTAT
92306132 AATTTAT
1 AATTTAT
92306139 AATTTTTAT
1 AA--TTTAT
*
92306148 AATTTTT
1 AATTTAT
92306155 AAT
1 AAT
92306158 AATTTTATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
7 23 0.77
9 7 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
AATTTAT
Found at i:92306159 original size:10 final size:9
Alignment explanation
Indices: 92306107--92306172 Score: 56
Period size: 9 Copynumber: 8.0 Consensus size: 9
92306097 ATTAATTAAT
92306107 TAATTTTTA
1 TAATTTTTA
**
92306116 -AAAATTTA
1 TAATTTTTA
92306124 TAA--TTTA
1 TAATTTTTA
92306131 TAA--TTTA
1 TAATTTTTA
92306138 TAATTTTTA
1 TAATTTTTA
92306147 TAATTTTTAA
1 TAATTTTT-A
92306157 TAA-TTTTA
1 TAATTTTTA
92306165 T-ATTTTTA
1 TAATTTTTA
92306173 AAAATAGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 11
0.79 0.03 0.17
Matches are distributed among these distances:
7 15 0.30
8 13 0.26
9 18 0.36
10 4 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (9 bp):
TAATTTTTA
Found at i:92306161 original size:19 final size:17
Alignment explanation
Indices: 92306137--92306173 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
92306127 TTTATAATTT
92306137 ATAATTTTTATAATTTTTA
1 ATAA-TTTTAT-ATTTTTA
92306156 ATAATTTTATATTTTTA
1 ATAATTTTATATTTTTA
92306173 A
1 A
92306174 AAATAGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 6 0.33
19 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATAATTTTATATTTTTA
Found at i:92306170 original size:16 final size:15
Alignment explanation
Indices: 92306120--92306170 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
92306110 TTTTTAAAAA
*
92306120 TTTATAA-TTTATAA
1 TTTATAATTTTATAT
92306134 TTTATAATTTTTATAATT
1 TTTATAA-TTTTAT-A-T
92306152 TTTAATAATTTTATAT
1 TTT-ATAATTTTATAT
92306168 TTT
1 TTT
92306171 TAAAAATAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
14 7 0.23
16 9 0.29
17 2 0.06
18 9 0.29
19 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATAATTTTATAT
Found at i:92308663 original size:100 final size:101
Alignment explanation
Indices: 92308490--92308678 Score: 317
Period size: 100 Copynumber: 1.9 Consensus size: 101
92308480 ACATTGGAGA
* * * *
92308490 ATCGATGAATTTCGACTACCCATTCAATTCTACACTCTACATAATTCTAAGGTACCATTATTTTT
1 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
* *
92308555 ATTTAAGA-TAATTAAGTATATATATTTATGTATTT
66 ATATAAGATTAATTAAATATATATATTTATGTATTT
92308590 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
1 ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
92308655 ATATAAGATTAATTAAATATATAT
66 ATATAAGATTAATTAAATATATAT
92308679 TCATGCATTT
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
100 68 0.83
101 14 0.17
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (101 bp):
ATCGATGAATTTCGACTACCCATCCAATTATACACTCTACATAATCCTAAGGTACCATTATTTAT
ATATAAGATTAATTAAATATATATATTTATGTATTT
Found at i:92311493 original size:52 final size:49
Alignment explanation
Indices: 92311437--92311534 Score: 115
Period size: 52 Copynumber: 1.9 Consensus size: 49
92311427 TTTTTAATTT
* * * *
92311437 GCTTTGTGTAATATAGATTTTAAAATTCTTTTACATTATTTATTTTAAACTC
1 GCTTTATGCAATATACATTTT-AAATTATTTT--ATTATTTATTTTAAACTC
* *
92311489 GCTTTATGCATTATTCATTTTAAATTATTTTATTATTTATTTTAAA
1 GCTTTATGCAATATACATTTTAAATTATTTTATTATTTATTTTAAA
92311535 ATTTTATATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 15 0.38
51 9 0.22
52 16 0.40
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (49 bp):
GCTTTATGCAATATACATTTTAAATTATTTTATTATTTATTTTAAACTC
Found at i:92311550 original size:22 final size:22
Alignment explanation
Indices: 92311500--92311550 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
92311490 CTTTATGCAT
92311500 TATTCATTTTAAATTATTTTATTA
1 TATT-ATTTTAAA-TATTTTATTA
92311524 T-TTATTTTAAA-ATTTTATATA
1 TATTATTTTAAATATTTTAT-TA
92311545 TATTAT
1 TATTAT
92311551 CAATTTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 12 0.48
23 2 0.08
24 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATTTTAAATATTTTATTA
Found at i:92311675 original size:26 final size:25
Alignment explanation
Indices: 92311637--92311740 Score: 73
Period size: 26 Copynumber: 4.0 Consensus size: 25
92311627 CAAGTTTCTT
* *
92311637 TTTACATAATATTTATTTTAAACTC
1 TTTATATATTATTTATTTTAAACTC
* ** *
92311662 ATTTATATATTATTTATCTTAATTTTT
1 -TTTATATATTATTTATTTTAA-ACTC
* *
92311689 TTTATATATTGTTCATTTTAAACTC
1 TTTATATATTATTTATTTTAAACTC
* *
92311714 TTTCCCGTATATTATTTATTTCAAACT
1 TTT---ATATATTATTTATTTTAAACT
92311741 TTCGCCTATA
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
25 4 0.07
26 36 0.62
27 1 0.02
28 17 0.29
ACGTcount: A:0.30, C:0.12, G:0.02, T:0.57
Consensus pattern (25 bp):
TTTATATATTATTTATTTTAAACTC
Found at i:92311692 original size:52 final size:54
Alignment explanation
Indices: 92311613--92311713 Score: 127
Period size: 52 Copynumber: 1.9 Consensus size: 54
92311603 AGATGTCTTG
*
92311613 TATATTACTTATTTCAAGTTTCTTTTTACATAATATTTATTTTAAACTCATTTA
1 TATATTACTTATTTCAAGTTTCTTTTTACATAATATTCATTTTAAACTCATTTA
* * * *
92311667 TATATTATTTATCTT-AA-TTT-TTTTTATATATTGTTCATTTTAAACTC
1 TATATTACTTAT-TTCAAGTTTCTTTTTACATAATATTCATTTTAAACTC
92311714 TTTCCCGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 23 0.56
53 3 0.07
54 13 0.32
55 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.58
Consensus pattern (54 bp):
TATATTACTTATTTCAAGTTTCTTTTTACATAATATTCATTTTAAACTCATTTA
Found at i:92311759 original size:26 final size:26
Alignment explanation
Indices: 92311713--92311769 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
92311703 ATTTTAAACT
**
92311713 CTTTCCCGTATATTATTTATTTCAAA
1 CTTTCCCGTATATTACCTATTTCAAA
*
92311739 CTTTCGCC-TATATTACCTATTTTAAA
1 CTTTC-CCGTATATTACCTATTTCAAA
*
92311765 ATTTC
1 CTTTC
92311770 TTATACATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.04, T:0.49
Consensus pattern (26 bp):
CTTTCCCGTATATTACCTATTTCAAA
Done.