Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 294 of 320
Found at i:93868199 original size:72 final size:74
Alignment explanation
Indices: 93868066--93868280 Score: 247
Period size: 76 Copynumber: 2.9 Consensus size: 74
93868056 CTGTTTTCAA
* * * *
93868066 AAAAATCACCTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACATGCTGAGATAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGATAT-ATTTCAATTTC
*
93868131 TGCT-TG-TC
65 TGATATGTTC
* * * * *
93868139 -AAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGGGACACACCGATATATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGATATATT-TCAATTTC
*
93868203 TTATATGTTTC
65 TGATATG-TTC
* * *
93868214 AAAAATCAACTCTTATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGATGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGATATA-TTTCAATTTC
93868279 TG
65 TG
93868281 TTTTTCAATT
Statistics
Matches: 116, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
71 3 0.03
72 53 0.46
73 2 0.02
75 2 0.02
76 54 0.47
77 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGATATATTTCAATTTCT
GATATGTTC
Found at i:93868351 original size:89 final size:88
Alignment explanation
Indices: 93868214--93868427 Score: 320
Period size: 89 Copynumber: 2.4 Consensus size: 88
93868204 TATATGTTTC
* * * * **
93868214 AAAAATCAACTCTTATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGATGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTGA
* * *
93868279 TGTTTTTCAATTTTTGTCCTTCAA
66 TGTTTTGCAAATTCTGT-CTTCAA
93868303 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTGA
*
93868368 TGTTTTGCAAATTCTGTTTTCAA
66 TGTTTTGCAAATTCTGTCTTCAA
*
93868391 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
93868428 TGACTCACGT
Statistics
Matches: 114, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
88 41 0.36
89 73 0.64
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (88 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTGA
TGTTTTGCAAATTCTGTCTTCAA
Found at i:93868474 original size:88 final size:84
Alignment explanation
Indices: 93868214--93868512 Score: 298
Period size: 89 Copynumber: 3.4 Consensus size: 84
93868204 TATATGTTTC
* * *
93868214 AAAAATCAACTCTTATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGATGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGACACGCTGA-GTATTTTCAATTTC
* *
93868279 TGTTTTTCAATTTTTGTCCTTCAA
64 TG-TTTTCAA-TTATGT-TTTCAA
* * **
93868303 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGAATTTTCAATTGA
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-AGGACACGCTGA-GTATTTTCAATTTC
*
93868368 TGTTTTGCAAATTCTGTTTTCAA
64 TGTTTT-C-AATTATGTTTTCAA
*
93868391 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT-TGACTCACGTGCTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGA--CAC--GCTGAG-TATTTTCAAT
*
93868455 TTCTGTTTT-AATGTATGTTTT-TA
61 TTCTGTTTTCAAT-TATGTTTTCAA
* * * *
93868478 AAGAGTCAACTCATATCGCGAGAAGTAAGTTGAGC
1 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
93868513 TCAGGATCAC
Statistics
Matches: 183, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
86 2 0.01
87 35 0.19
88 55 0.30
89 68 0.37
90 23 0.13
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTAGGACACGCTGAGTATTTTCAATTTCTG
TTTTCAATTATGTTTTCAA
Found at i:93869513 original size:11 final size:11
Alignment explanation
Indices: 93869497--93869522 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
93869487 ATACTAAAAT
93869497 ATATAAAACAA
1 ATATAAAACAA
93869508 ATATAAAACAA
1 ATATAAAACAA
93869519 ATAT
1 ATAT
93869523 TTAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (11 bp):
ATATAAAACAA
Found at i:93870622 original size:24 final size:26
Alignment explanation
Indices: 93870577--93870624 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
93870567 TTAATACATG
93870577 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
93870603 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
93870625 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:93878809 original size:17 final size:17
Alignment explanation
Indices: 93878787--93878822 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
93878777 TAGAAAAACC
93878787 ATATTTTATAAT-TTTTT
1 ATATTTTA-AATATTTTT
93878804 ATATTTTAAATATTTTT
1 ATATTTTAAATATTTTT
93878821 AT
1 AT
93878823 GTGCTCCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTTTAAATATTTTT
Found at i:93881055 original size:21 final size:21
Alignment explanation
Indices: 93881029--93881073 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
93881019 GTACCACTAG
93881029 ATACTAGTCAAATTATCCCTT
1 ATACTAGTCAAATTATCCCTT
93881050 ATACTAGTCAAATTATCCCTT
1 ATACTAGTCAAATTATCCCTT
93881071 ATA
1 ATA
93881074 TCAAGTTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.22, G:0.04, T:0.38
Consensus pattern (21 bp):
ATACTAGTCAAATTATCCCTT
Found at i:93886410 original size:44 final size:44
Alignment explanation
Indices: 93886327--93886410 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
93886317 CAACAGGCTA
* * *
93886327 CAAATCTTATCTCCCTAAAATTGTAGTACAGCAGATTAAAGCCG
1 CAAACCTTATCTCCCTAAAATTATAGTACAACAGATTAAAGCCG
* * * *
93886371 CAAACCTTATCTCCCTGAAGTTATAGTAGAACAGGTTAAA
1 CAAACCTTATCTCCCTAAAATTATAGTACAACAGATTAAA
93886411 AATAAACAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.27
Consensus pattern (44 bp):
CAAACCTTATCTCCCTAAAATTATAGTACAACAGATTAAAGCCG
Found at i:93886584 original size:44 final size:42
Alignment explanation
Indices: 93886468--93886606 Score: 107
Period size: 44 Copynumber: 3.2 Consensus size: 42
93886458 ATAGGCAACA
** * *
93886468 AATCTTATCTCCCTAAAATTACTGTGGAGAAAATTAAAGCTGC
1 AATCTTATCTCCCTAAAA-TAGAGTGGAGTAAATTAAAGCTAC
* * * * * * *
93886511 AAACCTATCTCCCTAAAGTTGTAGCGGAGTAAATTCAAGTTAC
1 AATCTTATCTCCCTAAAATAG-AGTGGAGTAAATTAAAGCTAC
* * *
93886554 AAGTCTTATCTCCCTAAAATAAGAGTGGAGTGAATCAAAGCAAC
1 AA-TCTTATCTCCCTAAAAT-AGAGTGGAGTAAATTAAAGCTAC
93886598 AATTCTTAT
1 AA-TCTTAT
93886607 ACCCCTGAAG
Statistics
Matches: 71, Mismatches: 22, Indels: 5
0.72 0.22 0.05
Matches are distributed among these distances:
42 1 0.01
43 32 0.45
44 37 0.52
45 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (42 bp):
AATCTTATCTCCCTAAAATAGAGTGGAGTAAATTAAAGCTAC
Found at i:93886772 original size:13 final size:12
Alignment explanation
Indices: 93886740--93886772 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
93886730 TTACAAAAAA
93886740 AAACCCAATTAC
1 AAACCCAATTAC
93886752 AAACCCAATTAC
1 AAACCCAATTAC
93886764 AATACCCAA
1 AA-ACCCAA
93886773 ATGGCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACCCAATTAC
Found at i:93887799 original size:3 final size:3
Alignment explanation
Indices: 93887791--93887839 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
93887781 TTTAACTTTA
93887791 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
93887839 A
1 A
93887840 AACTGTTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:93892078 original size:16 final size:17
Alignment explanation
Indices: 93892039--93892079 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
93892029 AGGGTGTAAG
93892039 ATTAATTAATTAAATTAA
1 ATTAATTAATTAAA-TAA
93892057 A-T-ATTAATTAAA-AA
1 ATTAATTAATTAAATAA
93892071 ATTAATTAA
1 ATTAATTAA
93892080 ATTCGGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 3 0.14
15 1 0.05
16 15 0.71
17 1 0.05
18 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTAATTAATTAAATAA
Found at i:93892327 original size:124 final size:122
Alignment explanation
Indices: 93892178--93892456 Score: 330
Period size: 124 Copynumber: 2.2 Consensus size: 122
93892168 AAAATAATTT
* **
93892178 TTTTTTCTTCAGTAGTATCTG-GAAAAAAATTTTAAGAAGAAGTTTCT-AAAGAAATAGTATCCA
1 TTTTTT-TACAGT-GTATCTGAGAAAAAAATTTTAAGAAGAAGTTTCTGAAA-AAATAGTATAAA
* *
93892241 AAACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCCACGTGGACGC
63 AAACGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGA-GC
* * * *
93892302 TTTTTTTACAGTGGTATCTGAGAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTAAAAA
1 TTTTTTTACAGT-GTATCTGAGAAAAAAATTTTAAGAAGAAGTTTCTGAAAAAATAGTATAAAAA
* * * *
93892367 ACGCTTTAAGCAGGATGGACTGTCAGTAAAAGTACTGAAAAAAGCTCCCACGTGGAGC
65 ACGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAGC
* *
93892425 TCTTTTGATACAGTATATCTGA-AAAAATAATT
1 T-TTTT-TTACAGTGTATCTGAGAAAAA-AATT
93892457 GTGAAATGAC
Statistics
Matches: 133, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
123 19 0.14
124 105 0.79
125 9 0.07
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (122 bp):
TTTTTTTACAGTGTATCTGAGAAAAAAATTTTAAGAAGAAGTTTCTGAAAAAATAGTATAAAAAA
CGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGAGC
Found at i:93892481 original size:124 final size:124
Alignment explanation
Indices: 93892240--93892485 Score: 327
Period size: 124 Copynumber: 2.0 Consensus size: 124
93892230 AATAGTATCC
* *
93892240 AAAACGCTTCAAGCAAGATGCACTGTCAGCAAAATTACTGAAAAATGCTCCCACGTGGACGCTTT
1 AAAACGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTTT
* * * * *
93892305 TTTTACAGTGGTATCTGAGAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTAA
66 TTATACAGTGATATCTGAAAAAATAATTGTGAGAAGACCTTTCTGAAAAAATAGTGTAA
* * * *
93892364 AAAACGCTTTAAGCAGGATGGACTGTCAGTAAAAGTACTGAAAAAAGCTCCCACGTGGA-GCTCT
1 AAAACGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCT-T
* *
93892428 TTTGATACAGT-ATATCTGAAAAAATAATTGTGA-AATGACCTTTTTGAACAAATAGTGT
65 TTT-ATACAGTGATATCTGAAAAAATAATTGTGAGAA-GACCTTTCTGAAAAAATAGTGT
93892486 CATGCAGTAT
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
123 5 0.05
124 95 0.90
125 6 0.06
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (124 bp):
AAAACGCTTCAAGCAAGATGCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTTT
TTATACAGTGATATCTGAAAAAATAATTGTGAGAAGACCTTTCTGAAAAAATAGTGTAA
Found at i:93895694 original size:56 final size:56
Alignment explanation
Indices: 93895634--93895766 Score: 239
Period size: 56 Copynumber: 2.4 Consensus size: 56
93895624 TTCCTTATTC
93895634 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
* *
93895690 AAAACAACTTTTATTTTATTACAAATATATAAGAGTAAATTATAATTAAAATATTA
1 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
*
93895746 AAAACAAATTTTATTTTATTA
1 AAAACAACTTTTATTTTATTA
93895767 AATGAAAGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (56 bp):
AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:93896861 original size:14 final size:14
Alignment explanation
Indices: 93896842--93896874 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
93896832 TATACATAAC
93896842 ACTAAATAATAAAT
1 ACTAAATAATAAAT
*
93896856 ACTAAATATTAAAT
1 ACTAAATAATAAAT
93896870 ACTAA
1 ACTAA
93896875 TACGAAACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (14 bp):
ACTAAATAATAAAT
Found at i:93897877 original size:49 final size:49
Alignment explanation
Indices: 93897821--93897920 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
93897811 ATAAAATTAA
* **
93897821 AATTAAAATTGGATAAATGAAAAAAAATATTAAATTGTATTGAAAAATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
* *
93897870 AATTAAAATTGCATAAATTAAAAAAAATATTAAATACTATTGAAATATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
93897919 AA
1 AA
93897921 AATTATCACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.58, C:0.02, G:0.07, T:0.33
Consensus pattern (49 bp):
AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
Found at i:93898125 original size:20 final size:21
Alignment explanation
Indices: 93898062--93898126 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 21
93898052 CAAAAATTAA
*
93898062 AGAGAGATTTGAGAAAATTT-G
1 AGAGA-ATTTGAGAGAATTTGG
*
93898083 AGAGAATATGAGAGAATTTTTGG
1 AGAGAATTTGAGAGAA--TTTGG
93898106 A-AGAATTTGAGAGAATTTGG
1 AGAGAATTTGAGAGAATTTGG
93898126 A
1 A
93898127 TAGGAGGACT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 15 0.39
21 5 0.13
22 16 0.42
23 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (21 bp):
AGAGAATTTGAGAGAATTTGG
Found at i:93898719 original size:5 final size:5
Alignment explanation
Indices: 93898709--93898741 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
93898699 AAGAATTTGT
93898709 TATTA TATTA TATTA TATTA TATTA TATTA TAT
1 TATTA TATTA TATTA TATTA TATTA TATTA TAT
93898742 ATAAATAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:93900472 original size:6 final size:6
Alignment explanation
Indices: 93900461--93900493 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
93900451 ATGTGCCGAC
93900461 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
93900494 CGATTCGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:93900526 original size:51 final size:51
Alignment explanation
Indices: 93900467--93900587 Score: 146
Period size: 45 Copynumber: 2.5 Consensus size: 51
93900457 CGACTACTGT
**
93900467 TACTGTTACTGTTACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
* *
93900518 TACTGTTACTGTTAC-----C-GTTATCGATTCAACACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
* *
93900563 TACTGCTACTGTTATTGTTACTGTT
1 TACTGTTACTGTTACTGTTACTGTT
93900588 TCGGCTTCGG
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
45 38 0.66
46 1 0.02
50 1 0.02
51 18 0.31
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (51 bp):
TACTGTTACTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAA
Found at i:93900543 original size:45 final size:45
Alignment explanation
Indices: 93900473--93900576 Score: 154
Period size: 45 Copynumber: 2.3 Consensus size: 45
93900463 CTGTTACTGT
* **
93900473 TACTGTTACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
* *
93900518 TACTGTTACTGTTACCGTTATCGATTCAACACTTTGTGTGTTGAA
1 TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
*
93900563 TACTGCTACTGTTA
1 TACTGTTACTGTTA
93900577 TTGTTACTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.41
Consensus pattern (45 bp):
TACTGTTACTGTTACCGTTACCGATTCAACACTTTGTGTGTCGAA
Found at i:93900728 original size:18 final size:18
Alignment explanation
Indices: 93900707--93900857 Score: 105
Period size: 18 Copynumber: 8.4 Consensus size: 18
93900697 CTGATTATTT
93900707 CTGAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
* * *
93900725 CTGAATAACTGATTGTCA
1 CTGAATAATTGACTGTTA
* *
93900743 CTGAAT-ATCTGATTGTCA
1 CTGAATAAT-TGACTGTTA
*
93900761 CTGAAT-ATCTGA-TTTTA
1 CTGAATAAT-TGACTGTTA
*
93900778 CTAAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
* * * *
93900796 CTAAATAACTTAATTGCTA
1 CTGAATAA-TTGACTGTTA
*
93900815 CTGAAT-ATCTGA-TTTTA
1 CTGAATAAT-TGACTGTTA
*
93900832 CTAAATAATTGACTGTTA
1 CTGAATAATTGACTGTTA
*
93900850 CTGGATAA
1 CTGAATAA
93900858 CCGATCAATT
Statistics
Matches: 107, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
17 24 0.22
18 71 0.66
19 12 0.11
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (18 bp):
CTGAATAATTGACTGTTA
Found at i:93900747 original size:36 final size:35
Alignment explanation
Indices: 93900692--93900805 Score: 131
Period size: 36 Copynumber: 3.2 Consensus size: 35
93900682 AAAGGTATAA
*
93900692 AATAACTGATTATTTCTGAATAATTGACTGTTACTG
1 AATAACTGATT-TTACTGAATAATTGACTGTTACTG
* * *
93900728 AATAACTGATTGTCACTGAAT-ATCTGATTGTCACTG
1 AATAACTGATT-TTACTGAATAAT-TGACTGTTACTG
* * *
93900764 AATATCTGATTTTACTAAATAATTGACTGTTACTA
1 AATAACTGATTTTACTGAATAATTGACTGTTACTG
93900799 AATAACT
1 AATAACT
93900806 TAATTGCTAC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
35 24 0.38
36 40 0.62
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (35 bp):
AATAACTGATTTTACTGAATAATTGACTGTTACTG
Found at i:93900900 original size:18 final size:18
Alignment explanation
Indices: 93900877--93900937 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
93900867 TGATCGATAC
*
93900877 TGAATAACTGGCTATTAT
1 TGAATAACTGACTATTAT
* *
93900895 TGAATAATTGATTATTAT
1 TGAATAACTGACTATTAT
* * *
93900913 CGAATAACTGACTGTTAC
1 TGAATAACTGACTATTAT
93900931 TGAATAA
1 TGAATAA
93900938 ATAATTGTTC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (18 bp):
TGAATAACTGACTATTAT
Found at i:93902117 original size:3 final size:3
Alignment explanation
Indices: 93902109--93902138 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
93902099 GGTTTTTCAA
93902109 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
93902139 TATATTTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:93903410 original size:16 final size:15
Alignment explanation
Indices: 93903371--93903404 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
93903361 AAATACATAA
93903371 AAAATATAAAACATGAC
1 AAAATA-AAAA-ATGAC
93903388 AAAATAAAAAATGAC
1 AAAATAAAAAATGAC
93903403 AA
1 AA
93903405 TGATAATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 4 0.24
17 6 0.35
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.15
Consensus pattern (15 bp):
AAAATAAAAAATGAC
Found at i:93903427 original size:3 final size:3
Alignment explanation
Indices: 93903419--93903777 Score: 206
Period size: 3 Copynumber: 120.3 Consensus size: 3
93903409 AATGAGAACG
* * * *
93903419 ATA ATA ATA ATA TTA ATA ATA ATA TTA ATA ATA GTA A-A AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
93903466 CTA ATG ATA ATA ATA GTA GTA ATA ATA AGA ATA TTA ATA TTA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
93903514 ATA ATA ATG ATA ATA GTA ATA GAAA ATA CA-A ATA AT- ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA ATA ATA ATA ATA
* * * *
93903559 GTAA ATA A-A AGTA A-A AGTA ATA GTA ATA ATA ATG GTA ATA ATA A-A
1 AT-A ATA ATA A-TA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* ** * *** * *
93903604 AGGA ATA ATA ATA GCA ATA ATA AGA GCG TTA ATA ATA GTA ATA ATA
1 A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
93903650 CA-A ATA ATA AT- ATA TATGA AAA ATA ATA ATA GTA A-A ATA ATA ATA
1 -ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
93903695 ATA ATA ATA ATA ATA ATA ATA ATA ATA GA-A GTA GTA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *
93903739 ATAA ATA CA-A GT- ATA ATA ATA ATA GTA ATA AT- ATA ATA A
1 AT-A ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
93903778 AACAACAAAA
Statistics
Matches: 271, Mismatches: 59, Indels: 52
0.71 0.15 0.14
Matches are distributed among these distances:
2 21 0.08
3 230 0.85
4 19 0.07
5 1 0.00
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:93907131 original size:42 final size:42
Alignment explanation
Indices: 93907085--93907235 Score: 207
Period size: 42 Copynumber: 3.6 Consensus size: 42
93907075 CATGGTCCAA
* *
93907085 CTATGGTCATT-CACATATTCACATATCGATGCCATAGCCTAG
1 CTATGGTC-TTACACGTAATCACATATCGATGCCATAGCCTAG
*
93907127 CTATGGTCTTATACGTAATCACATATCGATGCCATAG-CTCAG
1 CTATGGTCTTACACGTAATCACATATCGATGCCATAGCCT-AG
* * * *
93907169 CTATAGTCTTACACGTAATCACATATCGATGTCATAGCCCAA
1 CTATGGTCTTACACGTAATCACATATCGATGCCATAGCCTAG
93907211 CTATGGTCTTACACGTAATCACATA
1 CTATGGTCTTACACGTAATCACATA
93907236 CTGACATGGT
Statistics
Matches: 97, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
41 4 0.04
42 92 0.95
43 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
CTATGGTCTTACACGTAATCACATATCGATGCCATAGCCTAG
Found at i:93921641 original size:15 final size:16
Alignment explanation
Indices: 93921616--93921645 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
93921606 GCCCGAGGTA
93921616 AAAAGCCCAACAACCC
1 AAAAGCCCAACAACCC
93921632 AAAA-CCCAACAACC
1 AAAAGCCCAACAACC
93921646 TCCAAAGTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.43, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAAGCCCAACAACCC
Found at i:93921749 original size:22 final size:22
Alignment explanation
Indices: 93921721--93921863 Score: 130
Period size: 22 Copynumber: 6.3 Consensus size: 22
93921711 CAAATATCTT
93921721 CACTCCAACCACCTCACTAAAC
1 CACTCCAACCACCTCACTAAAC
*
93921743 CACTCCAACCACCCCACTAAAC
1 CACTCCAACCACCTCACTAAAC
* * *
93921765 CACTCTAACCACCCCACTAAAT
1 CACTCCAACCACCTCACTAAAC
* **
93921787 CACCTCACTAAACCA-CTCCAACCACCC
1 CA-CTC-C--AACCACCT-C-ACTAAAC
*
93921814 CACT-AAACCA-CTCCACTAAAC
1 CACTCCAACCACCT-CACTAAAC
93921835 CACTCCAACCACCTCACTAAAC
1 CACTCCAACCACCTCACTAAAC
93921857 CACTCCA
1 CACTCCA
93921864 CTAAACCACT
Statistics
Matches: 99, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
21 8 0.08
22 72 0.73
23 5 0.05
25 1 0.01
26 8 0.08
27 5 0.05
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.13
Consensus pattern (22 bp):
CACTCCAACCACCTCACTAAAC
Found at i:93921796 original size:35 final size:35
Alignment explanation
Indices: 93921749--93921887 Score: 217
Period size: 35 Copynumber: 4.0 Consensus size: 35
93921739 AAACCACTCC
* *
93921749 AACCACCCCACTAAACCACTCTAACCACCCCACTA
1 AACCACTCCACTAAACCACTCCAACCACCCCACTA
*
93921784 AATCAC-CTCACTAAACCACTCCAACCACCCCACTA
1 AACCACTC-CACTAAACCACTCCAACCACCCCACTA
*
93921819 AACCACTCCACTAAACCACTCCAACCACCTCACTA
1 AACCACTCCACTAAACCACTCCAACCACCCCACTA
*
93921854 AACCACTCCACTAAACCACTCCAACCACTCCACT
1 AACCACTCCACTAAACCACTCCAACCACCCCACT
93921888 TGCCTACAAA
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
34 1 0.01
35 94 0.98
36 1 0.01
ACGTcount: A:0.37, C:0.50, G:0.00, T:0.14
Consensus pattern (35 bp):
AACCACTCCACTAAACCACTCCAACCACCCCACTA
Found at i:93921873 original size:13 final size:13
Alignment explanation
Indices: 93921749--93921876 Score: 104
Period size: 13 Copynumber: 10.8 Consensus size: 13
93921739 AAACCACTCC
*
93921749 AACCACCCCACTA
1 AACCACTCCACTA
93921762 AACCACT---CT-
1 AACCACTCCACTA
*
93921771 AACCACCCCACTA
1 AACCACTCCACTA
*
93921784 AATCAC-CTCACTA
1 AACCACTC-CACTA
93921797 AACCACT-C-C--
1 AACCACTCCACTA
*
93921806 AACCACCCCACTA
1 AACCACTCCACTA
93921819 AACCACTCCACTA
1 AACCACTCCACTA
93921832 AACCACT-C-C--
1 AACCACTCCACTA
93921841 AACCAC-CTCACTA
1 AACCACTC-CACTA
93921854 AACCACTCCACTA
1 AACCACTCCACTA
93921867 AACCACTCCA
1 AACCACTCCA
93921877 ACCACTCCAC
Statistics
Matches: 93, Mismatches: 6, Indels: 32
0.71 0.05 0.24
Matches are distributed among these distances:
9 18 0.19
10 4 0.04
11 4 0.04
12 5 0.05
13 61 0.66
14 1 0.01
ACGTcount: A:0.38, C:0.49, G:0.00, T:0.13
Consensus pattern (13 bp):
AACCACTCCACTA
Found at i:93921879 original size:22 final size:22
Alignment explanation
Indices: 93921792--93921887 Score: 95
Period size: 22 Copynumber: 4.2 Consensus size: 22
93921782 TAAATCACCT
*
93921792 CACTAAACCACTCCAACCACCC
1 CACTAAACCACTCCAACCACTC
* **
93921814 CACTAAACCACTCC-ACTAAAC
1 CACTAAACCACTCCAACCACTC
*
93921835 CACTCCAACCACCTCACTAAACCACTC
1 CACT-AAACCA-CTC-C--AACCACTC
93921862 CACTAAACCACTCCAACCACTC
1 CACTAAACCACTCCAACCACTC
93921884 CACT
1 CACT
93921888 TGCCTACAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
21 8 0.13
22 31 0.52
23 3 0.05
24 2 0.03
25 3 0.05
26 5 0.08
27 8 0.13
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (22 bp):
CACTAAACCACTCCAACCACTC
Found at i:93921887 original size:57 final size:57
Alignment explanation
Indices: 93921721--93921863 Score: 216
Period size: 57 Copynumber: 2.5 Consensus size: 57
93921711 CAAATATCTT
* * **
93921721 CACTCCAACCACCTCACTAAACCACTCCAACCACCCCACTAAACCACTCTAACCACCC
1 CACTCCAACCACCTCACTAAACCACTCCAACCACCCCACTAAACCACTC-CACTAAAC
* *
93921779 CACT-AAATCACCTCACTAAACCACTCCAACCACCCCACTAAACCACTCCACTAAAC
1 CACTCCAACCACCTCACTAAACCACTCCAACCACCCCACTAAACCACTCCACTAAAC
93921835 CACTCCAACCACCTCACTAAACCACTCCA
1 CACTCCAACCACCTCACTAAACCACTCCA
93921864 CTAAACCACT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
56 8 0.11
57 64 0.84
58 4 0.05
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.13
Consensus pattern (57 bp):
CACTCCAACCACCTCACTAAACCACTCCAACCACCCCACTAAACCACTCCACTAAAC
Found at i:93922288 original size:19 final size:18
Alignment explanation
Indices: 93922251--93922292 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
93922241 AGAGAGAGTG
*
93922251 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
93922269 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
93922288 TTATT
1 TTATT
93922293 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:93922351 original size:33 final size:39
Alignment explanation
Indices: 93922277--93922358 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
93922267 TATTATTTTC
*
93922277 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
93922316 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
93922349 TATTACTATT
1 TATTACTATT
93922359 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:93925992 original size:15 final size:15
Alignment explanation
Indices: 93925972--93926002 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93925962 TTATATGATG
93925972 TTTGAATTGAATATA
1 TTTGAATTGAATATA
93925987 TTTGAATTGAATATA
1 TTTGAATTGAATATA
93926002 T
1 T
93926003 GAAATGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (15 bp):
TTTGAATTGAATATA
Found at i:93926249 original size:40 final size:40
Alignment explanation
Indices: 93926188--93926325 Score: 186
Period size: 40 Copynumber: 3.5 Consensus size: 40
93926178 CTCGAGAATA
* * *
93926188 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATAGTAACT
* * *
93926228 CAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATAGTAACT
* * *
93926268 TAAAGTGAATAGGATTTATTCTTGATTCACTATAGTAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATAGTAACT
*
93926308 TAAGGTGGATAGGATTTG
1 TAAAGTGGATAGGATTTG
93926326 ACCTAAAAAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATAGTAACT
Found at i:93926391 original size:79 final size:79
Alignment explanation
Indices: 93926290--93926527 Score: 318
Period size: 79 Copynumber: 3.0 Consensus size: 79
93926280 GATTTATTCT
* * * * *
93926290 TGATTCACTATAGTAACTTAAGGTGGATAGGATTTGACCTAAAAAGGGTAATCCCGATTCACTAC
1 TGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTAC
*
93926355 AATTACATGATATA
66 AGTTACATGATATA
* * *
93926369 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACCTGAAATGAGTAATCCTGATTCGCTAC
1 TGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTAC
* *
93926434 GGTTACATGATACA
66 AGTTACATGATATA
* * *
93926448 TGATTCCTTATGATAACTTAAGGT-GAGTAGGATTTGACCTGAAAA-GGTATTCCTGATTCGCTA
1 TGATTCATTATGGTAACTTAAGGTGGA-TAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTA
*
93926511 CAGTTACATGAGATA
65 CAGTTACATGATATA
93926526 TG
1 TG
93926528 TAACGACCCA
Statistics
Matches: 138, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
78 32 0.23
79 106 0.77
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (79 bp):
TGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTAC
AGTTACATGATATA
Found at i:93926914 original size:4 final size:4
Alignment explanation
Indices: 93926907--93926940 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
93926897 TTATATTAAT
93926907 TAAA TAAA TTAAA TAAA TTAAA TAAA TAAA TAAA
1 TAAA TAAA -TAAA TAAA -TAAA TAAA TAAA TAAA
93926941 GACAAATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
TAAA
Found at i:93926917 original size:13 final size:13
Alignment explanation
Indices: 93926901--93926940 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
93926891 ATTCTTTTAT
*
93926901 ATTAATTAAATAA
1 ATTAAATAAATAA
93926914 ATTAAATAAATTAA
1 ATTAAATAAA-TAA
93926928 A-TAAATAAATAA
1 ATTAAATAAATAA
93926940 A
1 A
93926941 GACAAATGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 4 0.16
13 17 0.68
14 4 0.16
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
ATTAAATAAATAA
Found at i:93926918 original size:9 final size:9
Alignment explanation
Indices: 93926904--93926940 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
93926894 CTTTTATATT
93926904 AATTAAATA
1 AATTAAATA
93926913 AATTAAATA
1 AATTAAATA
93926922 AATTAAATA
1 AATTAAATA
93926931 AA-TAAATA
1 AATTAAATA
93926939 AA
1 AA
93926941 GACAAATGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 8 0.29
9 20 0.71
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTAAATA
Found at i:93927479 original size:17 final size:17
Alignment explanation
Indices: 93927457--93927495 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
93927447 CAAATTTAAA
93927457 TATTAAATGTAAATTAG
1 TATTAAATGTAAATTAG
93927474 TATTAAATGTAAATTAG
1 TATTAAATGTAAATTAG
93927491 TATTA
1 TATTA
93927496 TATTAATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (17 bp):
TATTAAATGTAAATTAG
Found at i:93928434 original size:18 final size:18
Alignment explanation
Indices: 93928411--93928534 Score: 140
Period size: 18 Copynumber: 6.9 Consensus size: 18
93928401 TAAATAAATG
*
93928411 TACTGAATAACTGACTAC
1 TACTGAATAACTGACTAT
* * *
93928429 TACTGAATAATTAACTGT
1 TACTGAATAACTGACTAT
* *
93928447 TACTGAATAAATGACTGT
1 TACTGAATAACTGACTAT
*
93928465 TACTGAATAACTGATTAT
1 TACTGAATAACTGACTAT
*
93928483 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTAT
*
93928501 TACTGAATAAATGACTAT
1 TACTGAATAACTGACTAT
* * *
93928519 AACTAAATAACCGACT
1 TACTGAATAACTGACT
93928535 GTTTCTGAAC
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 89 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (18 bp):
TACTGAATAACTGACTAT
Found at i:93928487 original size:54 final size:54
Alignment explanation
Indices: 93928411--93928534 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
93928401 TAAATAAATG
*
93928411 TACTGAATAACTGACTACTACTGAATAATTAACTGTTACTGAATAAATGACTGT
1 TACTGAATAACTGACTACTACTGAATAACTAACTGTTACTGAATAAATGACTGT
* * * *
93928465 TACTGAATAACTGATTATTACTGAATAACTGACTGTTACTGAATAAATGACTAT
1 TACTGAATAACTGACTACTACTGAATAACTAACTGTTACTGAATAAATGACTGT
* * *
93928519 AACTAAATAACCGACT
1 TACTGAATAACTGACT
93928535 GTTTCTGAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (54 bp):
TACTGAATAACTGACTACTACTGAATAACTAACTGTTACTGAATAAATGACTGT
Found at i:93928543 original size:54 final size:54
Alignment explanation
Indices: 93928416--93928562 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
93928406 AAATGTACTG
* * * * * *
93928416 AATAACTGACTACTACTGAATAATTAACTGTTACTGAATAAATGACTGTTACTG
1 AATAACCGACTATTACTGAATAATTGACTGTTACTGAATAAATGACTATAACTA
* * *
93928470 AATAACTGATTATTACTGAATAACTGACTGTTACTGAATAAATGACTATAACTA
1 AATAACCGACTATTACTGAATAATTGACTGTTACTGAATAAATGACTATAACTA
* * *
93928524 AATAACCGACTGTTTCTGAACAATTGA-TCGTTACTGAAT
1 AATAACCGACTATTACTGAATAATTGACT-GTTACTGAAT
93928563 GATATTGATA
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 78 0.99
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (54 bp):
AATAACCGACTATTACTGAATAATTGACTGTTACTGAATAAATGACTATAACTA
Found at i:93930135 original size:18 final size:18
Alignment explanation
Indices: 93930112--93930194 Score: 73
Period size: 18 Copynumber: 4.7 Consensus size: 18
93930102 AATCTTTGTT
93930112 AAATAAAATAAAGTGATA
1 AAATAAAATAAAGTGATA
*
93930130 AAATAAAATAAA-AG-TA
1 AAATAAAATAAAGTGATA
* * * *
93930146 AAATCTATATAGAACT-ATT
1 AAAT-AAAATA-AAGTGATA
*
93930165 AAATAAAATACAGTGATA
1 AAATAAAATAAAGTGATA
93930183 AAATAAAATAAA
1 AAATAAAATAAA
93930195 AGTAAAAATC
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
16 6 0.12
17 7 0.14
18 31 0.63
19 5 0.10
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.24
Consensus pattern (18 bp):
AAATAAAATAAAGTGATA
Found at i:93930190 original size:53 final size:54
Alignment explanation
Indices: 93930110--93930217 Score: 191
Period size: 53 Copynumber: 2.0 Consensus size: 54
93930100 TGAATCTTTG
*
93930110 TTAAATAAAATAAAGTGATAAAATAAAATAAAAGT-AAAATCTATATAGAACTA
1 TTAAATAAAATAAAGTGATAAAATAAAATAAAAGTAAAAATCCATATAGAACTA
*
93930163 TTAAATAAAATACAGTGATAAAATAAAATAAAAGTAAAAATCCATATAGAACTA
1 TTAAATAAAATAAAGTGATAAAATAAAATAAAAGTAAAAATCCATATAGAACTA
93930217 T
1 T
93930218 ACTTCTTTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 34 0.65
54 18 0.35
ACGTcount: A:0.61, C:0.06, G:0.07, T:0.26
Consensus pattern (54 bp):
TTAAATAAAATAAAGTGATAAAATAAAATAAAAGTAAAAATCCATATAGAACTA
Found at i:93930285 original size:49 final size:50
Alignment explanation
Indices: 93930213--93930310 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 50
93930203 TCCATATAGA
* * * *
93930213 ACTATACTTCTTTTATTTTACATTAATTAGAAT-ATGGTTTTTTAACCTT
1 ACTATACTTCTTCTATTTGACATTAAGTAGAATAAAGGTTTTTTAACCTT
* *
93930262 ACTATACTT-TATCTATTTGACATTGAGTAGAATAAAGTTTTTTTAACCT
1 ACTATACTTCT-TCTATTTGACATTAAGTAGAATAAAGGTTTTTTAACCT
93930311 ATAAATAGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.02
49 27 0.66
50 13 0.32
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (50 bp):
ACTATACTTCTTCTATTTGACATTAAGTAGAATAAAGGTTTTTTAACCTT
Found at i:93932276 original size:16 final size:16
Alignment explanation
Indices: 93932232--93932270 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
93932222 AGAGAGCAGG
* *
93932232 GGAAAGAAAGAAGGAA
1 GGAAAAAAAGAAAGAA
93932248 GGAAAAAAAGAAAGAA
1 GGAAAAAAAGAAAGAA
93932264 GGAAAAA
1 GGAAAAA
93932271 GGGAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
GGAAAAAAAGAAAGAA
Found at i:93934404 original size:46 final size:46
Alignment explanation
Indices: 93934348--93934577 Score: 307
Period size: 46 Copynumber: 5.0 Consensus size: 46
93934338 AGTGTGCTCT
**
93934348 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATTATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
93934394 CTGATGTGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
93934440 CTGATTTGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
93934486 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * **
93934532 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
93934578 ATGACAGAAA
Statistics
Matches: 166, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 166 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:93934505 original size:92 final size:92
Alignment explanation
Indices: 93934348--93934593 Score: 339
Period size: 92 Copynumber: 2.7 Consensus size: 92
93934338 AGTGTGCTCT
** * * * **
93934348 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATTATGGCAACCTGATGTGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAG
93934413 ACCATGGTTGAAAGATACCATGGCAAC
66 ACCATGGTTGAAAGATACCATGGCAAC
* *
93934440 CTGATTTGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAACATGACGGGAAATGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAG
*
93934505 ACCATGGTTGAAAGATACCATGGCAGC
66 ACCATGGTTGAAAGATACCATGGCAAC
* * * ** * *
93934532 GTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAAT
93934594 GAGTAAGACC
Statistics
Matches: 135, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 135 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:93936279 original size:16 final size:17
Alignment explanation
Indices: 93936248--93936280 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93936238 TTCATAAGTA
93936248 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
93936265 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
93936281 GCTTCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:93936876 original size:46 final size:46
Alignment explanation
Indices: 93936561--93936868 Score: 415
Period size: 46 Copynumber: 6.7 Consensus size: 46
93936551 TTATCTTTAA
* * * * *
93936561 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGT
* *
93936607 CATGTTGTCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
93936653 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* *
93936699 CACGTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * *
93936745 CACGTTGCCATGGTATC-TTCAACCATAGTCTT-TTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
* * ** *
93936789 CATGTTGCTATGGTATCATTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
93936835 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
93936869 CACATTTCTT
Statistics
Matches: 236, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
44 26 0.11
45 31 0.13
46 179 0.76
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
Found at i:93938661 original size:11 final size:11
Alignment explanation
Indices: 93938645--93938692 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
93938635 CTTTATATAC
93938645 TAATAAAATAA
1 TAATAAAATAA
93938656 TAATAAAATATA
1 TAATAAAATA-A
* *
93938668 TTATTAAAATAT
1 -TAATAAAATAA
93938680 TAATAAAATAA
1 TAATAAAATAA
93938691 TA
1 TA
93938693 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:93938675 original size:24 final size:24
Alignment explanation
Indices: 93938639--93938694 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
93938629 TTCTTTCTTT
*
93938639 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
93938663 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
93938687 ATAATATT
1 AT-ATATT
93938695 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:93945218 original size:11 final size:11
Alignment explanation
Indices: 93945199--93945243 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
93945189 TAAATATTTA
93945199 TAATAAAATAT
1 TAATAAAATAT
*
93945210 TAGTAAAATAT
1 TAATAAAATAT
*
93945221 CTCATTAAAATAT
1 -T-AATAAAATAT
93945234 TAATAAAATA
1 TAATAAAATA
93945244 ATATTTATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 18 0.62
12 2 0.07
13 9 0.31
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:93963266 original size:16 final size:16
Alignment explanation
Indices: 93963245--93963333 Score: 67
Period size: 16 Copynumber: 5.4 Consensus size: 16
93963235 CATTCATGAG
*
93963245 TGTTTTAATGTCTTTA
1 TGTTTTAATGTCTTAA
*
93963261 TGTTTTGTTTATGT-TTAA
1 TG--TT-TTAATGTCTTAA
*
93963279 TGCTTTT-ATGTCTTATT
1 TG-TTTTAATGTCTTA-A
93963296 TGTTTTAA-GTCTTAA
1 TGTTTTAATGTCTTAA
* *
93963311 CGTTCTAATGTCTTAA
1 TGTTTTAATGTCTTAA
93963327 TGTTTTA
1 TGTTTTA
93963334 TGTTTTTTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
15 10 0.18
16 29 0.51
17 5 0.09
18 7 0.12
19 6 0.11
ACGTcount: A:0.19, C:0.08, G:0.13, T:0.60
Consensus pattern (16 bp):
TGTTTTAATGTCTTAA
Found at i:93963876 original size:16 final size:16
Alignment explanation
Indices: 93963855--93963908 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
93963845 TATGCTGGAT
93963855 ACATGACTATTGTATG
1 ACATGACTATTGTATG
* *
93963871 ACATGA-TGTTGGAT-
1 ACATGACTATTGTATG
93963885 ACATGACTATTGTATG
1 ACATGACTATTGTATG
93963901 ACATGACT
1 ACATGACT
93963909 TTACTAGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
14 6 0.19
15 12 0.38
16 14 0.44
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.35
Consensus pattern (16 bp):
ACATGACTATTGTATG
Found at i:93963886 original size:30 final size:30
Alignment explanation
Indices: 93963850--93963906 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
93963840 GCAGGTATGC
93963850 TGGATACATGACTATTGTATGACATGATGT
1 TGGATACATGACTATTGTATGACATGATGT
93963880 TGGATACATGACTATTGTATGACATGA
1 TGGATACATGACTATTGTATGACATGA
93963907 CTTTACTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (30 bp):
TGGATACATGACTATTGTATGACATGATGT
Found at i:93969015 original size:21 final size:20
Alignment explanation
Indices: 93968985--93969023 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
93968975 GTCTTCTAAA
93968985 TTTATAGAATTATCAGAATT
1 TTTATAGAATTATCAGAATT
*
93969005 TTTATCAGAATTATTAGAA
1 TTTAT-AGAATTATCAGAA
93969024 CTGCTACTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (20 bp):
TTTATAGAATTATCAGAATT
Found at i:93969071 original size:40 final size:40
Alignment explanation
Indices: 93969011--93969090 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
93969001 AATTTTTATC
*
93969011 AGAATTATTAGAACTGCTACTACTGTCTGTAGTGTCATAG
1 AGAATTATTAGAACTACTACTACTGTCTGTAGTGTCATAG
93969051 AGAATTATTAGAACTACTACTACTGTCTGTAGTGTCATAG
1 AGAATTATTAGAACTACTACTACTGTCTGTAGTGTCATAG
93969091 TTTAACATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (40 bp):
AGAATTATTAGAACTACTACTACTGTCTGTAGTGTCATAG
Found at i:93970258 original size:41 final size:42
Alignment explanation
Indices: 93970204--93970307 Score: 131
Period size: 41 Copynumber: 2.5 Consensus size: 42
93970194 TTGCTTTCAC
*
93970204 GTTGCTTCCTTTTTTTGTCTGAACCTAGATGTTGCTTTCCCAA
1 GTTGCTT-CTTTTTTTGTCTAAACCTAGATGTTGCTTTCCCAA
* * *
93970247 GTTGCTT-TTTTTTTGTCTAAACTTGGATGTTGTTTTCCCAA
1 GTTGCTTCTTTTTTTGTCTAAACCTAGATGTTGCTTTCCCAA
*
93970288 GTTGCTAAC-TTTTTTGTCTA
1 GTTGCT-TCTTTTTTTGTCTA
93970308 GGCATGTATG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
41 36 0.67
42 11 0.20
43 7 0.13
ACGTcount: A:0.14, C:0.18, G:0.16, T:0.51
Consensus pattern (42 bp):
GTTGCTTCTTTTTTTGTCTAAACCTAGATGTTGCTTTCCCAA
Found at i:93970319 original size:42 final size:41
Alignment explanation
Indices: 93970214--93970335 Score: 127
Period size: 41 Copynumber: 3.0 Consensus size: 41
93970204 GTTGCTTCCT
* * * **
93970214 TTTTTTGTCTGAACCTAGATGTTGCTTTCCCAAGTTGCTTT
1 TTTTTTGTCTAAACATGGATGTTGCTTTCCCAAGTTGCTAC
* *
93970255 TTTTTTGTCTAAACTTGGATGTTGTTTTCCCAAGTTGCTAAC
1 TTTTTTGTCTAAACATGGATGTTGCTTTCCCAAGTTGCT-AC
** * * *
93970297 TTTTTTGTCTAGGCATGTATGTTGCTTTCCTATGTTGCT
1 TTTTTTGTCTAAACATGGATGTTGCTTTCCCAAGTTGCT
93970336 TCCTTGATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
41 35 0.52
42 32 0.48
ACGTcount: A:0.15, C:0.17, G:0.18, T:0.50
Consensus pattern (41 bp):
TTTTTTGTCTAAACATGGATGTTGCTTTCCCAAGTTGCTAC
Found at i:93972713 original size:21 final size:20
Alignment explanation
Indices: 93972689--93972740 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
93972679 TTACGCGTGC
93972689 ATATTATATATTATAAAAAT
1 ATATTATATATTATAAAAAT
*
93972709 AATATGAT-TATTTATAAAAAT
1 -ATATTATATA-TTATAAAAAT
*
93972730 ATGTTATATAT
1 ATATTATATAT
93972741 ATTTTTTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATTATATATTATAAAAAT
Found at i:93973821 original size:24 final size:23
Alignment explanation
Indices: 93973793--93973843 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
93973783 GTAAAATTCT
* *
93973793 TTTTTAGT-ATAATTAAATTATATA
1 TTTTTA-TAATAATAAAAATATA-A
93973817 TTTTTATAATAATAAAAATATAA
1 TTTTTATAATAATAAAAATATAA
93973840 TTTT
1 TTTT
93973844 ATTATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTTTATAATAATAAAAATATAA
Found at i:93973866 original size:15 final size:16
Alignment explanation
Indices: 93973836--93973874 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
93973826 TAATAAAAAT
93973836 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
93973853 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
93973868 ATAATTT
1 ATAATTT
93973875 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:93973929 original size:32 final size:29
Alignment explanation
Indices: 93973810--93973929 Score: 72
Period size: 32 Copynumber: 4.1 Consensus size: 29
93973800 TATAATTAAA
*
93973810 TTATATATTTTTATAATAATAAAAATATAATT
1 TTATA-ATTTTTA-AA-AATCAAAATATAATT
* ** *
93973842 TTATTA-TTTT---AAT-AATTTATATTT
1 TTATAATTTTTAAAAATCAAAATATAATT
* *
93973866 TTATAATTTTTAAAAATTAAATTA-AATTT
1 TTATAATTTTTAAAAATCAAAATATAA-TT
93973895 TTATTAATTTTTAAAAAAATCAAAATATAATT
1 TTA-TAATTTTT--AAAAATCAAAATATAATT
93973927 TTA
1 TTA
93973930 CTATTATTAA
Statistics
Matches: 69, Mismatches: 9, Indels: 20
0.70 0.09 0.20
Matches are distributed among these distances:
24 13 0.19
25 7 0.10
28 4 0.06
29 10 0.14
30 12 0.17
31 1 0.01
32 20 0.29
33 2 0.03
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.53
Consensus pattern (29 bp):
TTATAATTTTTAAAAATCAAAATATAATT
Found at i:93975161 original size:17 final size:17
Alignment explanation
Indices: 93975141--93975193 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
93975131 TCAATTTATA
93975141 AATATATTTTAAATTTT
1 AATATATTTTAAATTTT
*
93975158 AATA-ATTTTGAATTTT
1 AATATATTTTAAATTTT
* * *
93975174 TATGTATTTTTAATTTT
1 AATATATTTTAAATTTT
93975191 AAT
1 AAT
93975194 TAAAAACTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 13 0.43
17 17 0.57
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (17 bp):
AATATATTTTAAATTTT
Found at i:93975194 original size:23 final size:23
Alignment explanation
Indices: 93975178--93975233 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
93975168 AATTTTTATG
93975178 TATTTTTAATTTTAATTAAAAAC
1 TATTTTTAATTTTAATTAAAAAC
93975201 TATTTTTAATTTTAATTAAAAAC
1 TATTTTTAATTTTAATTAAAAAC
93975224 TATTTTTAAT
1 TATTTTTAAT
93975234 CTATACTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTTTTAATTTTAATTAAAAAC
Found at i:93979150 original size:18 final size:19
Alignment explanation
Indices: 93979127--93979174 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
93979117 ATCAATAAAG
93979127 TATATTCTCTATTGCT-TT
1 TATATTCTCTATTGCTCTT
* *
93979145 TATATTTTCT-TTGTTCTT
1 TATATTCTCTATTGCTCTT
*
93979163 TATTTTCTCTAT
1 TATATTCTCTAT
93979175 CTTTCTTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 4 0.17
18 19 0.79
19 1 0.04
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.67
Consensus pattern (19 bp):
TATATTCTCTATTGCTCTT
Found at i:93987099 original size:5 final size:5
Alignment explanation
Indices: 93987089--93987124 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
93987079 AATAATTAAG
93987089 TATAT TATAT TATAT TATA- T-TAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TAT
93987125 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 2 0.07
4 2 0.07
5 25 0.86
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:93987114 original size:13 final size:13
Alignment explanation
Indices: 93987096--93987133 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
93987086 AAGTATATTA
93987096 TATTATATTATAT
1 TATTATATTATAT
93987109 TATTATATTATAT
1 TATTATATTATAT
93987122 TATTATA-TATAT
1 TATTATATTATAT
93987134 AAAAGAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:93989691 original size:21 final size:22
Alignment explanation
Indices: 93989667--93989709 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
93989657 TGAAATTAGA
93989667 TTGAATTTAAAAATAT-ATATT
1 TTGAATTTAAAAATATAATATT
* **
93989688 TTGATTTTTGAAATATAATATT
1 TTGAATTTAAAAATATAATATT
93989710 ATAATAGTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
TTGAATTTAAAAATATAATATT
Found at i:93995843 original size:5 final size:5
Alignment explanation
Indices: 93995833--93995857 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93995823 CATACAGAAA
93995833 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
93995858 TGGTTCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:94002131 original size:3 final size:3
Alignment explanation
Indices: 94002123--94002161 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
94002113 GATCATCCAA
94002123 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
94002162 GGTCAAGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:94005630 original size:31 final size:32
Alignment explanation
Indices: 94005551--94005630 Score: 76
Period size: 33 Copynumber: 2.4 Consensus size: 32
94005541 AAATTAATTT
*
94005551 ATATTTTATTTATCATTATATTAAATTATTTAA
1 ATATTTTA-TTATCATTATATTAAATTATTAAA
*
94005584 ATATCGCTTATTATCA-TAT-TTAAAATT-TTAAA
1 ATAT--TTTATTATCATTATATT-AAATTATTAAA
94005616 ATATTTTATGTATCA
1 ATATTTTAT-TATCA
94005631 CTAGTTTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
30 4 0.10
31 5 0.12
32 10 0.25
33 12 0.30
34 6 0.15
35 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.53
Consensus pattern (32 bp):
ATATTTTATTATCATTATATTAAATTATTAAA
Found at i:94009487 original size:19 final size:19
Alignment explanation
Indices: 94009442--94009488 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
94009432 ATCAAATTAA
*
94009442 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
94009461 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
94009480 AATAAAAAT
1 AATAAAAAT
94009489 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:94013738 original size:14 final size:14
Alignment explanation
Indices: 94013719--94013748 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
94013709 AATGGTAGAA
94013719 GGATTTTGATTTGG
1 GGATTTTGATTTGG
94013733 GGATTTTGATTTGG
1 GGATTTTGATTTGG
94013747 GG
1 GG
94013749 GAAAAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (14 bp):
GGATTTTGATTTGG
Found at i:94013793 original size:13 final size:13
Alignment explanation
Indices: 94013777--94013810 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
94013767 TGGGGATACC
94013777 GATTTTAGGGGGA
1 GATTTTAGGGGGA
94013790 GATTTTAGGGGGA
1 GATTTTAGGGGGA
*
94013803 AATTTTAG
1 GATTTTAG
94013811 ACGTTCCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (13 bp):
GATTTTAGGGGGA
Found at i:94015291 original size:54 final size:53
Alignment explanation
Indices: 94015195--94015310 Score: 124
Period size: 54 Copynumber: 2.2 Consensus size: 53
94015185 GTTTTTTGGA
* * *
94015195 GTTTAGGGTTTTAAGGGTTATAGTTTAGTTTTTAGGGGTTTTTAGGATTTAGAG
1 GTTTAGGGTTTTAAGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAG-G
* * ** * * *
94015249 GTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTATTATTTTTTGGGGTTTAGG
1 GTTTAGGGTTTTAAGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
94015302 GTTTTAGGG
1 G-TTTAGGG
94015311 ATTATATGAC
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (53 bp):
GTTTAGGGTTTTAAGGGTTATAGATTAGTGTTTAGGAGTTTTTAGGATTTAGG
Found at i:94015374 original size:36 final size:41
Alignment explanation
Indices: 94015332--94015421 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
94015322 TTTAGCGGCG
*
94015332 TAATGCTCT-G-TTTTAGC-GCG-TTT-CCCAAAGCGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
94015368 TAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
1 TAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
* *
94015409 TATTGCTCCGGTT
1 TAATGCTCTGGTT
94015422 ATAATTTTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
36 9 0.20
37 1 0.02
38 7 0.15
39 3 0.07
40 3 0.07
41 23 0.50
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (41 bp):
TAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGC
Found at i:94031703 original size:11 final size:11
Alignment explanation
Indices: 94031687--94031711 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94031677 ATCCCGTGTA
94031687 AGAAATTACTT
1 AGAAATTACTT
94031698 AGAAATTACTT
1 AGAAATTACTT
94031709 AGA
1 AGA
94031712 TGATATTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (11 bp):
AGAAATTACTT
Found at i:94036720 original size:21 final size:21
Alignment explanation
Indices: 94036694--94036737 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
94036684 AGGCGCATCC
94036694 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
94036715 AAAGTATTTTATCTCCAGAAA
1 AAAGTATTTTATCTCCAGAAA
94036736 AA
1 AA
94036738 CGGTGGTGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (21 bp):
AAAGTATTTTATCTCCAGAAA
Found at i:94039032 original size:17 final size:17
Alignment explanation
Indices: 94039006--94039070 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 17
94038996 CAACGTTTTC
*
94039006 TTTAACATATTTAAAAT
1 TTTAATATATTTAAAAT
*
94039023 TTTAATATATTTAAATTTT
1 TTTAATATATTTAAA--AT
*
94039042 TTTAAGT-TTTTTAAAAT
1 TTTAA-TATATTTAAAAT
94039059 TTTAAATATATT
1 TTT-AATATATT
94039071 AAGAAATCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 19 0.50
18 5 0.13
19 13 0.34
20 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
TTTAATATATTTAAAAT
Found at i:94039037 original size:62 final size:63
Alignment explanation
Indices: 94038908--94039038 Score: 160
Period size: 62 Copynumber: 2.1 Consensus size: 63
94038898 ATATTAAAAT
* * * * * *
94038908 TTTAAAAATTTAAATTTGCTTATACTTAAATTTTCTTTTAATATGTTTCAAAATTTTAATAGA
1 TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
* *
94038971 -TTAAATATTTAAAATTGATTATACTCAACGTTTTC-TTTAACATATTT-AAAATTTTAATATA
1 TTTAAATATTTAAAATTGATTATACTCAA-ATTTTCTTTTAACATATTTCAAAATTTTAATAGA
94039032 TTTAAAT
1 TTTAAAT
94039039 TTTTTTAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
61 13 0.22
62 40 0.69
63 5 0.09
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.50
Consensus pattern (63 bp):
TTTAAATATTTAAAATTGATTATACTCAAATTTTCTTTTAACATATTTCAAAATTTTAATAGA
Found at i:94039361 original size:20 final size:21
Alignment explanation
Indices: 94039328--94039367 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
94039318 ACTTTCAAAA
*
94039328 TTAATTATACTTAATATTTTT
1 TTAATTATACTTAAAATTTTT
*
94039349 TTAA-TATATTTAAAATTTT
1 TTAATTATACTTAAAATTTT
94039368 AGAAAACTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TTAATTATACTTAAAATTTTT
Found at i:94042547 original size:21 final size:20
Alignment explanation
Indices: 94042513--94042551 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
94042503 TTAATCAACC
94042513 ACTTTATATATAATAAAAAT
1 ACTTTATATATAATAAAAAT
*
94042533 ACTTATATTTATAATAAAA
1 ACTT-TATATATAATAAAA
94042552 TAGAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
ACTTTATATATAATAAAAAT
Found at i:94053933 original size:16 final size:17
Alignment explanation
Indices: 94053908--94053943 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
94053898 AAAACTTATG
*
94053908 TTTTCTATCCTTTCAAT
1 TTTTCTATCCTTCCAAT
94053925 TTTTC-ATCCTTCCAAT
1 TTTTCTATCCTTCCAAT
94053941 TTT
1 TTT
94053944 CTTTCTACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTCTATCCTTCCAAT
Found at i:94058140 original size:3 final size:3
Alignment explanation
Indices: 94058134--94058158 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
94058124 TTCTATTCAT
94058134 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
94058159 AACATGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:94058918 original size:17 final size:18
Alignment explanation
Indices: 94058890--94058923 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
94058880 GTTTAATTGA
94058890 ATAAATTATTAAAAAAAC
1 ATAAATTATTAAAAAAAC
94058908 ATAAA-TATTAAAAAAA
1 ATAAATTATTAAAAAAA
94058924 TATATGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAATTATTAAAAAAAC
Found at i:94060922 original size:18 final size:18
Alignment explanation
Indices: 94060901--94060951 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
94060891 TAACTAATTA
94060901 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
**
94060919 TTACTGAATAAACGACTG
1 TTACTGAATAATTGACTG
94060937 TTACTGAATAATTGA
1 TTACTGAATAATTGA
94060952 TTAATACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:94060959 original size:18 final size:18
Alignment explanation
Indices: 94060884--94060979 Score: 79
Period size: 18 Copynumber: 5.4 Consensus size: 18
94060874 TAAATAAAAG
* *
94060884 TACTGAATAACTAATTAT
1 TACTGAATAACTGATTGT
* *
94060902 TACTGAATAATTGACTGT
1 TACTGAATAACTGATTGT
*
94060920 TACTGAATAAAC-GACTGT
1 TACTGAAT-AACTGATTGT
* **
94060938 TACTGAATAATTGATTAA
1 TACTGAATAACTGATTGT
* *
94060956 TACTG-ATGACTGATTGA
1 TACTGAATAACTGATTGT
94060973 TACTGAA
1 TACTGAA
94060980 CAATAAAGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
17 16 0.25
18 45 0.71
19 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (18 bp):
TACTGAATAACTGATTGT
Found at i:94064833 original size:21 final size:21
Alignment explanation
Indices: 94064795--94064834 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
94064785 ATTTGTATAT
* **
94064795 ACAATCTATATTCTATTAAAA
1 ACAATATATATTAGATTAAAA
94064816 ACAATATATATTAGATTAA
1 ACAATATATATTAGATTAA
94064835 TATATTAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (21 bp):
ACAATATATATTAGATTAAAA
Found at i:94066086 original size:3 final size:3
Alignment explanation
Indices: 94066080--94066106 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
94066070 CGTCTTATGC
94066080 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
94066107 CGTTTTCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:94066708 original size:99 final size:99
Alignment explanation
Indices: 94066578--94066781 Score: 372
Period size: 99 Copynumber: 2.1 Consensus size: 99
94066568 TGTCACCTCG
*
94066578 AAATAAGAATTTGTTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
*
94066643 AACTTATTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
* *
94066677 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAATGTGCTCT
1 AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
94066742 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
66 AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
94066776 AAATAA
1 AAATAA
94066782 TCGAATACCC
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 101 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.39
Consensus pattern (99 bp):
AAATAAGAATTTATTTTAAAATAAAGGCAATATTCGGTGTTTGAGAATTCGAGAAAACGTGCCCT
AACTTACTGGGTTTTGATTTCTTTCGTTTACTCT
Found at i:94075319 original size:51 final size:51
Alignment explanation
Indices: 94075243--94075480 Score: 314
Period size: 51 Copynumber: 4.8 Consensus size: 51
94075233 TTTGAAATTG
94075243 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
94075294 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
* **
94075345 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACT-GTTAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA-GAAAA-TAAATAA
** **
94075397 GATAAA-T-A--A--TT-AAATAAATTA-AAACTGTTATAAGAAAATAAATAA
1 G-TAAAGTGAGGATTTTGAAATTGATTAGAAACT-AAATAAGAAAATAAATAA
94075442 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
1 GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAA
94075481 TTAAAACTGT
Statistics
Matches: 160, Mismatches: 14, Indels: 26
0.80 0.07 0.13
Matches are distributed among these distances:
44 5 0.03
45 14 0.09
46 13 0.08
47 2 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 103 0.64
52 14 0.09
53 5 0.03
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.29
Consensus pattern (51 bp):
GTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAAGAAAATAAATAA
Found at i:94075464 original size:97 final size:97
Alignment explanation
Indices: 94075329--94075512 Score: 368
Period size: 97 Copynumber: 1.9 Consensus size: 97
94075319 TAGAAACTAA
94075329 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
94075394 TAAGATAAATAATTAAATAAATTAAAACTGTT
66 TAAGATAAATAATTAAATAAATTAAAACTGTT
94075426 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
1 ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
94075491 TAAGATAAATAATTAAATAAAT
66 TAAGATAAATAATTAAATAAAT
94075513 CAGAAATTAA
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 87 1.00
ACGTcount: A:0.54, C:0.03, G:0.12, T:0.30
Consensus pattern (97 bp):
ATAAGAAAATAAATAAGTAAAGTGAGGATTTTGAAATTGATTAGAAACTAAATAATTAAAACTGT
TAAGATAAATAATTAAATAAATTAAAACTGTT
Found at i:94076405 original size:5 final size:5
Alignment explanation
Indices: 94076395--94076451 Score: 71
Period size: 5 Copynumber: 11.0 Consensus size: 5
94076385 AAGCTAAATT
*
94076395 AATAA AAT-A AATAA AATAA AATAAA AATAAA TAATAA AATAA AACAA
1 AATAA AATAA AATAA AATAA AAT-AA AAT-AA -AATAA AATAA AATAA
94076442 AATAA AATAA
1 AATAA AATAA
94076452 TATCTTCCTA
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.09
5 30 0.64
6 10 0.21
7 3 0.06
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:94076416 original size:23 final size:23
Alignment explanation
Indices: 94076399--94076453 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 23
94076389 TAAATTAATA
94076399 AAATAAATAAAATAAAATAAAAAT
1 AAAT-AATAAAATAAAATAAAAAT
*
94076423 AAATAATAAAATAAAA-CAAAAT
1 AAATAATAAAATAAAATAAAAAT
94076445 AAAATAATA
1 -AAATAATA
94076454 TCTTCCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 5 0.17
23 20 0.69
24 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAATAAAATAAAATAAAAAT
Found at i:94076426 original size:33 final size:33
Alignment explanation
Indices: 94076389--94076451 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
94076379 TAGCTTAAGC
*
94076389 TAAATTAATAAAAT-AAATAAAATAAAATAAAAA
1 TAAA-TAATAAAATAAAACAAAATAAAATAAAAA
94076422 TAAATAATAAAATAAAACAAAATAAAATAA
1 TAAATAATAAAATAAAACAAAATAAAATAA
94076452 TATCTTCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (33 bp):
TAAATAATAAAATAAAACAAAATAAAATAAAAA
Found at i:94076453 original size:18 final size:17
Alignment explanation
Indices: 94076389--94076453 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 17
94076379 TAGCTTAAGC
* *
94076389 TAAATTAATAAAATAAA
1 TAAAATAATAAAAAAAA
94076406 TAAAATAAAATAAAAATAAA
1 TAAAAT--AATAAAAA-AAA
94076426 TAATAA-AATAAAACAAAA
1 TAA-AATAATAAAA-AAAA
94076444 TAAAATAATA
1 TAAAATAATA
94076454 TCTTCCTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
17 7 0.17
18 17 0.43
19 8 0.20
20 6 0.15
21 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (17 bp):
TAAAATAATAAAAAAAA
Found at i:94081372 original size:9 final size:9
Alignment explanation
Indices: 94081358--94081400 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
94081348 TTCAAATCTC
94081358 TCAAAACCT
1 TCAAAACCT
*
94081367 TTAAAACCT
1 TCAAAACCT
*
94081376 TCAAAATCT
1 TCAAAACCT
*
94081385 CCCAAAACCT
1 -TCAAAACCT
94081395 TCAAAA
1 TCAAAA
94081401 GTATCATAGT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (9 bp):
TCAAAACCT
Found at i:94082366 original size:17 final size:17
Alignment explanation
Indices: 94082340--94082373 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94082330 TATATAATTG
*
94082340 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
94082357 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
94082374 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:94083637 original size:24 final size:24
Alignment explanation
Indices: 94083549--94083636 Score: 158
Period size: 24 Copynumber: 3.7 Consensus size: 24
94083539 GAAATGATTT
*
94083549 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
94083573 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
*
94083597 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
94083621 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
94083637 GGTTAACATG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.19, C:0.14, G:0.32, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:94083652 original size:24 final size:24
Alignment explanation
Indices: 94083549--94083654 Score: 97
Period size: 24 Copynumber: 4.4 Consensus size: 24
94083539 GAAATGATTT
* *
94083549 TGGCACTATGTGTGCGAATTTGA-A
1 TGGCACTATGTGTGCGGA-TTAACA
* ***
94083573 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGGATTAACA
***
94083597 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTAACA
*
94083621 TGGCACTATGTGTGCGGGTTAACA
1 TGGCACTATGTGTGCGGATTAACA
*
94083645 TGGTACTATG
1 TGGCACTATG
94083655 GATATGAATT
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
23 2 0.03
24 71 0.97
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTAACA
Found at i:94083653 original size:48 final size:48
Alignment explanation
Indices: 94083549--94083654 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
94083539 GAAATGATTT
***
94083549 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
* * **
94083597 TGGCACTATGTGTGCGGATTTGTATGGCACTATGTGTGCGGGTTAACA
1 TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
*
94083645 TGGTACTATG
1 TGGCACTATG
94083655 GATATGAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (48 bp):
TGGCACTATGTGTGCGAATTTGAATGGCACTATGTGTGCGAATTAACA
Found at i:94084165 original size:69 final size:70
Alignment explanation
Indices: 94084034--94084165 Score: 203
Period size: 69 Copynumber: 1.9 Consensus size: 70
94084024 AGTTTATTAC
* * * * * *
94084034 TAATTAATTTGCTGTTGTGATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTAC
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
94084099 TTAGT
66 TTAGT
94084104 TAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
1 TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGT
94084166 GTTATGTGCT
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
69 36 0.64
70 20 0.36
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (70 bp):
TAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTAC
TTAGT
Found at i:94084373 original size:39 final size:39
Alignment explanation
Indices: 94084321--94084506 Score: 246
Period size: 39 Copynumber: 4.7 Consensus size: 39
94084311 ATTTGATGTA
*
94084321 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
94084360 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** *
94084399 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
94084439 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
94084478 TATCCGGACTTATGGTCCGCAGGCTTCGT
1 TATCCGGACTTAAGGTCCGCAGGCTTCGT
94084507 ATTGGTACTA
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
39 94 0.73
40 34 0.27
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:94084482 original size:79 final size:79
Alignment explanation
Indices: 94084319--94084489 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
94084309 ATATTTGATG
* ** * * *
94084319 TATATCCAGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGG
1 TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
94084383 CTTCATGCTGGAAT
66 CTTCATGCTAGAAC
* *
94084397 TGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
1 TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
* *
94084462 CTTCGTGCTAGTAC
66 CTTCATGCTAGAAC
94084476 TATATCCGGACTTA
1 TATATCCGGACTTA
94084490 TGGTCCGCAG
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
78 10 0.13
79 68 0.87
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (79 bp):
TATATCCGGACTTAAAGACCCGTAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGA
CTTCATGCTAGAAC
Found at i:94084529 original size:118 final size:118
Alignment explanation
Indices: 94084321--94084543 Score: 302
Period size: 118 Copynumber: 1.9 Consensus size: 118
94084311 ATTTGATGTA
* * * * *
94084321 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTT
1 TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * *
94084386 CATGCTGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
* * *
94084439 TATCCGGACTTAAGATCCGCAGACTTCGTGCTAGTACTATATCCGGACTTATGGTCCGCAGGCTT
1 TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
* * * * *
94084504 CGTATTGGTACTATATCTGGGCTTAAAGTCCCGTAGGCTT
66 CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTT
94084544 TGTGTTGGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
118 89 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (118 bp):
TATCCAGACTTAAGATCCGCAGACTTCGTGCTAGAACTATATCCGGACTTAAGGTCCGCAGGCTT
CATACTGGAACTATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAATTG
Found at i:94084552 original size:40 final size:39
Alignment explanation
Indices: 94084319--94084552 Score: 137
Period size: 39 Copynumber: 5.9 Consensus size: 39
94084309 ATATTTGATG
* * ** * *
94084319 TATATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * ** * *
94084358 TGTATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * * ** * *
94084397 TGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGAAT
1 TATATCCGGACTTAAAG-TCCGCAGGCTTCGTATTGGTAC
* * ** *
94084437 TGTATCCGGACTT-AAGATCCGCAGACTTCGTGCTAGTAC
1 TATATCCGGACTTAAAG-TCCGCAGGCTTCGTATTGGTAC
**
94084476 TATATCCGGACTTATGGTCCGCAGGCTTCGTATTGGTAC
1 TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
* * * * *
94084515 TATATCTGGGCTTAAAGTCCCGTAGGCTTTGTGTTGGT
1 TATATCCGGACTTAAAGT-CCGCAGGCTTCGTATTGGT
94084553 GATTGAATTC
Statistics
Matches: 163, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
39 115 0.71
40 48 0.29
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTTCGTATTGGTAC
Found at i:94086858 original size:19 final size:19
Alignment explanation
Indices: 94086813--94086857 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
94086803 CAGTATAAAA
94086813 ATATGTTTAATATTATTAAT
1 ATAT-TTTAATATTATTAAT
94086833 ATATTTTAAT-TTATT-AT
1 ATATTTTAATATTATTAAT
94086850 ATAATTTT
1 AT-ATTTT
94086858 TTTCTTGCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.17
18 10 0.42
19 6 0.25
20 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
ATATTTTAATATTATTAAT
Found at i:94089310 original size:17 final size:17
Alignment explanation
Indices: 94089290--94089350 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
94089280 ATTTCAAGAC
94089290 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* * ***
94089307 TTATTTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
94089326 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
94089344 TTATGTA
1 TTATGTA
94089351 GTAATTCAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 6
0.66 0.21 0.13
Matches are distributed among these distances:
17 15 0.48
18 4 0.13
19 4 0.13
20 8 0.26
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:94089326 original size:37 final size:37
Alignment explanation
Indices: 94089285--94089390 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
94089275 TGTTAATTTC
*
94089285 AAGACTTATGTAATGTTTTTAATTATTTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
94089322 AAGACTTATGTAATGTTTTTAATTATGTAGTAATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
94089359 AAGACTTATGTAATATTTTTAATTATGTAGTG
1 AAGACTTATGTAATGTTTTTAATTATGTAGTG
94089391 TAGTGATTCA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:94089384 original size:17 final size:17
Alignment explanation
Indices: 94089327--94089387 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
94089317 ATTCAAAGAC
*
94089327 TTATGTAATGTTTTTAA
1 TTATGTAATATTTTTAA
* ***
94089344 TTATGTAGTAATTCAAAGA
1 TTATGTAAT-ATTTTTA-A
94089363 CTTATGTAATATTTTTAA
1 -TTATGTAATATTTTTAA
94089381 TTATGTA
1 TTATGTA
94089388 GTGTAGTGAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 15 0.47
18 4 0.12
19 5 0.16
20 8 0.25
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.51
Consensus pattern (17 bp):
TTATGTAATATTTTTAA
Found at i:94089412 original size:9 final size:9
Alignment explanation
Indices: 94089400--94089466 Score: 98
Period size: 9 Copynumber: 7.4 Consensus size: 9
94089390 GTAGTGATTC
*
94089400 AATTCGGTC
1 AATTCGGTT
94089409 AATTCGGTT
1 AATTCGGTT
*
94089418 AATTCGGTC
1 AATTCGGTT
94089427 AATTCGGTT
1 AATTCGGTT
*
94089436 AATTCGATT
1 AATTCGGTT
*
94089445 AATTCGGGT
1 AATTCGGTT
94089454 AATTCGGTT
1 AATTCGGTT
94089463 AATT
1 AATT
94089467 TTTAACCAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:94092923 original size:37 final size:37
Alignment explanation
Indices: 94092874--94092945 Score: 87
Period size: 37 Copynumber: 1.9 Consensus size: 37
94092864 TTCAATTTTC
94092874 CACTCAATATTCA-C-ATATTTTATTCAATATCAATAAT
1 CACTCAATATTCATCAAT-TTTTATTCAAT-TCAATAAT
*
94092911 CACT-AATAATTCATGAATTTTTATTCAATTCAATA
1 CACTCAAT-ATTCATCAATTTTTATTCAATTCAATA
94092946 CCATAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
36 3 0.10
37 15 0.48
38 11 0.35
39 2 0.06
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.42
Consensus pattern (37 bp):
CACTCAATATTCATCAATTTTTATTCAATTCAATAAT
Found at i:94092956 original size:3 final size:3
Alignment explanation
Indices: 94092948--94092980 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
94092938 ATTCAATACC
94092948 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94092981 CTTACCATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.