Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 295 of 320
Found at i:94093613 original size:54 final size:54
Alignment explanation
Indices: 94093551--94093658 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
94093541 AAAGGGGCTA
*
94093551 AATTGACTTACCTATTAAACTTCTAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
94093605 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
1 AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
94093659 CTTTCTTTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.28, C:0.29, G:0.04, T:0.40
Consensus pattern (54 bp):
AATTGACTTACCTATTAAACTTCCAAGCTTCAAAATCCCTATTTCCCCTTTTTC
Found at i:94096608 original size:53 final size:49
Alignment explanation
Indices: 94096533--94096681 Score: 149
Period size: 52 Copynumber: 2.9 Consensus size: 49
94096523 CGGATCACAT
* *
94096533 ATCATACTGATGCCATATCCCAGATATGGTCTTATACAGAGGCACATTATCAC
1 ATCATACCGATGCCATAGCCCAG-TATGGTCTTATAC-G-GGCACA-TATCAC
* * *
94096586 ATCATACCGATGCCATAGCCCAGTCATGGTTTTATATGGGAGTACATATCAC
1 ATCATACCGATGCCATAGCCCAGT-ATGGTCTTATA-CGG-GCACATATCAC
94096638 A--ATGCACCGATGCCATAGCCCAGCTATGGTCTTATACGGGCACA
1 ATCAT--ACCGATGCCATAGCCCAG-TATGGTCTTATACGGGCACA
94096682 CACATCACAT
Statistics
Matches: 82, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
50 6 0.07
51 2 0.02
52 37 0.45
53 37 0.45
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCATACCGATGCCATAGCCCAGTATGGTCTTATACGGGCACATATCAC
Found at i:94097327 original size:35 final size:35
Alignment explanation
Indices: 94097288--94097357 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
94097278 AGAACCCCAG
94097288 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
1 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
94097323 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
1 TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
94097358 CTCATGGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (35 bp):
TTCCGTACTAAATCATCATAAACTTTCAGCTCTTA
Found at i:94100797 original size:26 final size:26
Alignment explanation
Indices: 94100768--94100849 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
94100758 TGATACAAAT
*
94100768 TGATAATGGGTTAGGTAGATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94100794 TGATAATGGGTTAGGTAAACGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
94100820 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94100846 TGAT
1 TGAT
94100850 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.09, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94107622 original size:33 final size:33
Alignment explanation
Indices: 94107580--94107645 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
94107570 TGCATTAAGT
*
94107580 TAGATTTCTAGATTTTTTTTAGTAAAATCCCTG
1 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
94107613 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
1 TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
94107646 CTCCTCTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (33 bp):
TAGATTTCTAGATTATTTTTAGTAAAATCCCTG
Found at i:94111661 original size:17 final size:18
Alignment explanation
Indices: 94111639--94111679 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
94111629 TATCAACTGT
94111639 AAAATG-AACA-GAAAATA
1 AAAATGAAACAGGAAAA-A
94111656 AAAATGAAACAGGAAAAA
1 AAAATGAAACAGGAAAAA
94111674 AAAATG
1 AAAATG
94111680 GTGCGCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 11 0.50
19 5 0.23
ACGTcount: A:0.71, C:0.05, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAATGAAACAGGAAAAA
Found at i:94120777 original size:5 final size:5
Alignment explanation
Indices: 94120767--94120791 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
94120757 TTAATTCGAT
94120767 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
94120792 ATCAGATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:94121231 original size:18 final size:18
Alignment explanation
Indices: 94121205--94121255 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
94121195 CTTCTGCCAC
*
94121205 TCTTCTTTTCTTTTCT-TT
1 TCTTTTTTTCTTTT-TATT
*
94121223 TCTTTTTTTATTTTTATT
1 TCTTTTTTTCTTTTTATT
94121241 T-TTTTTTCTCTTTTT
1 TCTTTTTT-TCTTTTT
94121256 TTAATTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.04, C:0.14, G:0.00, T:0.82
Consensus pattern (18 bp):
TCTTTTTTTCTTTTTATT
Found at i:94121237 original size:24 final size:25
Alignment explanation
Indices: 94121210--94121256 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
94121200 GCCACTCTTC
*
94121210 TTTTCTTTTCTTTTCT-TTTTTTAT
1 TTTTATTTTCTTTTCTCTTTTTTAT
*
94121234 TTTTATTTTTTTTTCTCTTTTTT
1 TTTTATTTTCTTTTCTCTTTTTT
94121257 TAATTTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (25 bp):
TTTTATTTTCTTTTCTCTTTTTTAT
Found at i:94132057 original size:12 final size:12
Alignment explanation
Indices: 94132040--94132074 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
94132030 TCAAAGAAAA
94132040 AATAAAATGAAT
1 AATAAAATGAAT
*
94132052 AATAAAATAAAT
1 AATAAAATGAAT
94132064 AATAACAATGA
1 AATAA-AATGA
94132075 TAACAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 16 0.80
13 4 0.20
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (12 bp):
AATAAAATGAAT
Found at i:94133782 original size:53 final size:52
Alignment explanation
Indices: 94133650--94133789 Score: 158
Period size: 52 Copynumber: 2.7 Consensus size: 52
94133640 GATATGTTCG
*
94133650 CCCGTATAAGACCATAGTTGGGCTATGGCATTGGTGCAATGTGATACATGTT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
* * * **
94133702 CCCGCATAAGACTATAGCTGGGCTATGG-AGTCGGTGTGATGTGATA-ATGTGAT
1 CCCGTATAAGACCATAGTTGGGCTATGGCA-TCGGTGCAATGTGATACATGT--T
* * *
94133755 TCCGTATAAGACCATATTTGGGATATGGCATCGGT
1 CCCGTATAAGACCATAGTTGGGCTATGGCATCGGT
94133790 ATTATATGTG
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
51 5 0.07
52 38 0.53
53 28 0.39
54 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (52 bp):
CCCGTATAAGACCATAGTTGGGCTATGGCATCGGTGCAATGTGATACATGTT
Found at i:94136641 original size:46 final size:46
Alignment explanation
Indices: 94136591--94136766 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
94136581 TGGTTGAGCA
94136591 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
94136637 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G
* * * *
94136682 CATCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
94136730 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94136767 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
41 4 0.04
42 3 0.03
43 1 0.01
44 1 0.01
45 1 0.01
46 62 0.58
47 26 0.25
48 1 0.01
49 1 0.01
51 3 0.03
52 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94136747 original size:93 final size:93
Alignment explanation
Indices: 94136588--94136759 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
94136578 GGATGGTTGA
* * * *
94136588 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
94136653 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
* *
94136681 GCATCCGAGCTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
94136746 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
94136760 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAACGTAACTAG
Found at i:94138777 original size:24 final size:23
Alignment explanation
Indices: 94138741--94138786 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
94138731 TATATTAGCG
*
94138741 AAAGATTTATTGATCAGAAGCAC
1 AAAGATTTATTGAGCAGAAGCAC
* *
94138764 AAAGAATTTCTTGAGCTGAAGCA
1 AAAG-ATTTATTGAGCAGAAGCA
94138787 AGGTAATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (23 bp):
AAAGATTTATTGAGCAGAAGCAC
Found at i:94144228 original size:46 final size:46
Alignment explanation
Indices: 94144178--94144443 Score: 246
Period size: 46 Copynumber: 5.7 Consensus size: 46
94144168 TTGAGCATCT
94144178 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* **
94144224 GAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G--TCC
*
94144271 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* **
94144317 GAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G--TCC
* * *
94144364 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
94144410 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94144444 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 18, Indels: 44
0.74 0.07 0.18
Matches are distributed among these distances:
41 8 0.04
42 6 0.03
43 2 0.01
44 2 0.01
45 2 0.01
46 87 0.48
47 54 0.30
48 2 0.01
49 2 0.01
50 1 0.01
51 6 0.03
52 8 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:94144290 original size:47 final size:47
Alignment explanation
Indices: 94144221--94144389 Score: 206
Period size: 47 Copynumber: 3.6 Consensus size: 47
94144211 GATGCGAATG
94144221 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
* * **
94144268 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C--GT-GAAACGTAACTAGGCA
94144314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
*
94144361 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
94144390 ACTTATGGAT
Statistics
Matches: 102, Mismatches: 9, Indels: 22
0.77 0.07 0.17
Matches are distributed among these distances:
41 4 0.04
42 3 0.03
43 1 0.01
44 1 0.01
45 1 0.01
46 27 0.26
47 55 0.54
48 1 0.01
49 1 0.01
50 1 0.01
51 3 0.03
52 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAACGTAACTAGGCA
Found at i:94144331 original size:93 final size:93
Alignment explanation
Indices: 94144172--94144436 Score: 485
Period size: 93 Copynumber: 2.8 Consensus size: 93
94144162 GGATGGTTGA
* *
94144172 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
94144237 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
94144265 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
94144330 TGAGTCCGAGTTCGTGAAACGTAACTAG
66 TGAGTCCGAGTTCGTGAAACGTAACTAG
* * *
94144358 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
94144423 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
94144437 CTTATGGGCG
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 167 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAACGTAACTAG
Found at i:94151642 original size:5 final size:5
Alignment explanation
Indices: 94151634--94151659 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
94151624 GAAAAAATAA
94151634 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
94151660 CAATTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:94166060 original size:29 final size:29
Alignment explanation
Indices: 94166022--94166093 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
94166012 ACAAAATAGT
94166022 AACATAAGTGACTAAAACGTAAAATTTCA
1 AACATAAGTGACTAAAACGTAAAATTTCA
94166051 AACATAAGTGACTAAAACGTAAAATTTCA
1 AACATAAGTGACTAAAACGTAAAATTTCA
*
94166080 AACATAAGTAACTA
1 AACATAAGTGACTA
94166094 TTTTTATAGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.24
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAAAATTTCA
Found at i:94167130 original size:11 final size:11
Alignment explanation
Indices: 94167114--94167140 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
94167104 GTTGCCAGCT
94167114 TGCTTGAGAAA
1 TGCTTGAGAAA
94167125 TGCTTGAGAAA
1 TGCTTGAGAAA
94167136 TGCTT
1 TGCTT
94167141 TTTGTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.33
Consensus pattern (11 bp):
TGCTTGAGAAA
Found at i:94172336 original size:22 final size:22
Alignment explanation
Indices: 94172312--94172355 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
94172302 TACACTTTTA
*
94172312 TTTTTAAATTTATTAAATAATAT
1 TTTTTAAATTT-TTAAAAAATAT
*
94172335 TTTTTTAATTTTTAAAAAATA
1 TTTTTAAATTTTTAAAAAATA
94172356 AATTTATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTTAAATTTTTAAAAAATAT
Found at i:94172401 original size:22 final size:23
Alignment explanation
Indices: 94172356--94172406 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
94172346 TTAAAAAATA
*
94172356 AATTTATATTAATAAATTGAGATTT
1 AATTTATAATAATAAATT-AGA-TT
94172381 AATTTATAATAA-AAATT-GATT
1 AATTTATAATAATAAATTAGATT
94172402 AATTT
1 AATTT
94172407 TGAAATGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 7 0.28
22 2 0.08
24 5 0.20
25 11 0.44
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (23 bp):
AATTTATAATAATAAATTAGATT
Found at i:94173683 original size:19 final size:19
Alignment explanation
Indices: 94173655--94173698 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
94173645 TAAAGGATGT
* *
94173655 TTTTATTAATATATTAAAA
1 TTTTAATAATATAATAAAA
* *
94173674 TTTTAATAATTTAATATAA
1 TTTTAATAATATAATAAAA
94173693 TTTTAA
1 TTTTAA
94173699 AACTTTAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAATAATATAATAAAA
Found at i:94173705 original size:19 final size:18
Alignment explanation
Indices: 94173672--94173712 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
94173662 AATATATTAA
94173672 AATTTTAATAATTTAATAT
1 AATTTTAATAATTTAA-AT
94173691 AATTTTAA-AACTTTAAAT
1 AATTTTAATAA-TTTAAAT
94173709 AATT
1 AATT
94173713 CAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTTTAATAATTTAAAT
Found at i:94173717 original size:28 final size:27
Alignment explanation
Indices: 94173665--94173732 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
94173655 TTTTATTAAT
* * *
94173665 ATATTAAAATTTTAATAATTTAATATA
1 ATATTAAAATTTAAATAATTCAATAAA
*
94173692 ATTTTAAAACTTTAAATAATTCAATAAA
1 ATATTAAAA-TTTAAATAATTCAATAAA
94173720 ATATTAAATATTT
1 ATATTAAA-ATTT
94173733 TACGTTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 8 0.24
28 25 0.74
29 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (27 bp):
ATATTAAAATTTAAATAATTCAATAAA
Found at i:94177940 original size:4 final size:4
Alignment explanation
Indices: 94177931--94177960 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
94177921 ATGCAAGTTT
94177931 CATA CATA CATA CATA CATA CATA CATA CA
1 CATA CATA CATA CATA CATA CATA CATA CA
94177961 GATTCCCTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
CATA
Found at i:94188092 original size:18 final size:17
Alignment explanation
Indices: 94188060--94188093 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
94188050 ATCCGATATG
*
94188060 TTTTATTTTACTTTTAC
1 TTTTATTTTAATTTTAC
94188077 TTTTATTTTTAATTTTA
1 TTTTA-TTTTAATTTTA
94188094 GTCATGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTATTTTAATTTTAC
Found at i:94196726 original size:22 final size:23
Alignment explanation
Indices: 94196675--94196726 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
94196665 TTATTTAAAT
* *
94196675 TATTTT-ATAATTTATAAAATTT
1 TATTTTAATAATTAATAAAATTA
**
94196697 TAAATTAATAA-TAATAAAATTA
1 TATTTTAATAATTAATAAAATTA
94196719 TATTTTAA
1 TATTTTAA
94196727 CTCTCTTAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTTTAATAATTAATAAAATTA
Found at i:94200380 original size:15 final size:15
Alignment explanation
Indices: 94200360--94200437 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
94200350 TTTATGGAAA
94200360 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
94200375 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
94200389 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
94200405 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
94200419 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
94200435 ATC
1 ATC
94200438 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:94200397 original size:30 final size:30
Alignment explanation
Indices: 94200356--94200437 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
94200346 CATATTTATG
*
94200356 GAAAATCAAAGATATGGGTATCAAATAATA
1 GAAAGTCAAAGATATGGGTATCAAATAATA
* *
94200386 GAAAGTCAAAGATATGGGTATCAAATATTG
1 GAAAGTCAAAGATATGGGTATCAAATAATA
94200416 GAAAGTCAAAGATATGGGTATC
1 GAAAGTCAAAGATATGGGTATC
94200438 GAGATATTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24
Consensus pattern (30 bp):
GAAAGTCAAAGATATGGGTATCAAATAATA
Found at i:94205044 original size:15 final size:15
Alignment explanation
Indices: 94205024--94205131 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
94205014 TTTATGGAAA
94205024 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
94205039 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
94205053 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
94205069 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
94205083 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
94205099 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
94205113 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
94205129 ATC
1 ATC
94205132 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:94205061 original size:30 final size:30
Alignment explanation
Indices: 94205018--94205141 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
94205008 TCCATATTTA
* *
94205018 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
94205048 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
94205078 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
94205108 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
94205139 TGG
1 TGG
94205142 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:94206134 original size:3 final size:3
Alignment explanation
Indices: 94206121--94206164 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
94206111 CTAAGATAAG
*
94206121 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94206165 CTATAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:94209031 original size:46 final size:46
Alignment explanation
Indices: 94208974--94209154 Score: 256
Period size: 46 Copynumber: 3.9 Consensus size: 46
94208964 TTTGACGTGA
* * * * *
94208974 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGT
***
94209020 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
94209066 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
94209112 TGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
94209155 GAGAGCACAC
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
45 4 0.03
46 119 0.97
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:94211195 original size:11 final size:11
Alignment explanation
Indices: 94211154--94211196 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
94211144 TTATATACTA
* *
94211154 ATAAAATAATA
1 ATAAAATATTT
94211165 ATAAAATATCTT
1 ATAAAATAT-TT
94211177 ATTAAAATATTT
1 A-TAAAATATTT
94211189 ATAAAATA
1 ATAAAATA
94211197 ATATTTATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 15 0.54
12 5 0.18
13 8 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAAAATATTT
Found at i:94211237 original size:31 final size:30
Alignment explanation
Indices: 94211159--94211237 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
94211149 TACTAATAAA
* *
94211159 ATAATAAT-AAAATATCTTATTAAAATATTT
1 ATAA-AATAAAAATATCTAATTAAAATAATT
**
94211189 ATAAAATAATATTTATCTAATT-AAATAATT
1 ATAAAATAA-AAATATCTAATTAAAATAATT
94211219 ATAAAATATCAAAATATCT
1 ATAAAATA--AAAATATCT
94211238 CTAGCATCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
29 3 0.08
30 20 0.51
31 15 0.38
32 1 0.03
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAAAATAAAAATATCTAATTAAAATAATT
Found at i:94216598 original size:46 final size:46
Alignment explanation
Indices: 94216531--94216656 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 46
94216521 CTTCACATAA
* * * *
94216531 TGATGCCATAGCCCA-ACTATGGTCTTACACGAATCACATATCTCAC
1 TGATGCCATATCCCAGA-TATGGTCTTATACGAAGCACATATCACAC
* * *
94216577 TGATGCCATATCCCAGATATGGTTTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
**
94216624 CAATGCCATATCCCAGATATGGTCTTATACGAA
1 TGATGCCATATCCCAGATATGGTCTTATACGAA
94216657 AATCACTTGT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (46 bp):
TGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:94216714 original size:31 final size:31
Alignment explanation
Indices: 94216679--94216863 Score: 257
Period size: 31 Copynumber: 6.0 Consensus size: 31
94216669 CTTGTCACTT
*
94216679 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
94216710 GTAGCCGGAA-CTATCATTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
94216741 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
94216772 GTAGCCGGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
94216803 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
** * *
94216834 GTAGCTAAAGCTATCACTTTTCACTTATCA
1 GTAGCCGAAGCTACCACTTTTCACTGATCA
94216864 TTTGTCATTG
Statistics
Matches: 138, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
30 5 0.04
31 128 0.93
32 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:94216940 original size:50 final size:51
Alignment explanation
Indices: 94216841--94216960 Score: 190
Period size: 50 Copynumber: 2.4 Consensus size: 51
94216831 CAGGTAGCTA
* *
94216841 AAGCTATCACTTTTCACTTATCATTTGTCATTGATCAGATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGTGTAGCCG
*
94216892 AAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAAATAAGTGTAGCCG
1 AAGCTATCACTTATCACTTATCA-TTTGTCATTGATCAAATAAGTGTAGCCG
94216942 AAGCTATCACTTATCACTT
1 AAGCTATCACTTATCACTT
94216961 GTTGCCATGG
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
50 44 0.68
51 21 0.32
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (51 bp):
AAGCTATCACTTATCACTTATCATTTGTCATTGATCAAATAAGTGTAGCCG
Found at i:94219448 original size:15 final size:15
Alignment explanation
Indices: 94219428--94219495 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
94219418 ACACTACAAA
94219428 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
94219443 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
94219460 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
94219477 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
94219490 ATATTT
1 ATATTT
94219496 TCAATAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:94219545 original size:16 final size:16
Alignment explanation
Indices: 94219514--94219550 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
94219504 ATGTGAATAA
94219514 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
94219530 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
94219546 TATTA
1 TATTA
94219551 AAATAAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:94225661 original size:17 final size:18
Alignment explanation
Indices: 94225627--94225671 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
94225617 AATTCATGTG
94225627 TAATTTTATTATTTTTAA
1 TAATTTTATTATTTTTAA
94225645 TAATTTTATTA-TTTTAA
1 TAATTTTATTATTTTTAA
94225662 -AGATTTTATT
1 TA-ATTTTATT
94225672 TTTATTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.04
17 14 0.54
18 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TAATTTTATTATTTTTAA
Found at i:94227024 original size:20 final size:20
Alignment explanation
Indices: 94227001--94227038 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
94226991 AATATTTTGT
*
94227001 ATAATTATCTAAAATATTAG
1 ATAATTACCTAAAATATTAG
*
94227021 ATAATTACCTAAACTATT
1 ATAATTACCTAAAATATT
94227039 TCAATATCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (20 bp):
ATAATTACCTAAAATATTAG
Found at i:94228402 original size:60 final size:60
Alignment explanation
Indices: 94228318--94228436 Score: 186
Period size: 60 Copynumber: 2.0 Consensus size: 60
94228308 ATACTAAACT
* * * *
94228318 AAACACAACAATTTATAACTTAATCCTAAATTACTAATAACTTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
94228378 AAACACGAAAAATTT-TAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACAC-AAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
94228437 TAAAAAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
60 47 0.87
61 7 0.13
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:94230389 original size:27 final size:27
Alignment explanation
Indices: 94230357--94230412 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
94230347 TAGATTTTCA
94230357 AAGAATTCTTCATGTTAATACTTGATT
1 AAGAATTCTTCATGTTAATACTTGATT
94230384 AAGAATTCTTCATGTTAATACTTGATT
1 AAGAATTCTTCATGTTAATACTTGATT
94230411 AA
1 AA
94230413 TAATGTAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.43
Consensus pattern (27 bp):
AAGAATTCTTCATGTTAATACTTGATT
Found at i:94244445 original size:23 final size:25
Alignment explanation
Indices: 94244419--94244464 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
94244409 TATCATTCAT
*
94244419 TTCATTATAT-CA-ATATTTTATCC
1 TTCATCATATCCATATATTTTATCC
*
94244442 TTCATCATTTCCATATATTTTAT
1 TTCATCATATCCATATATTTTAT
94244465 GTATATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 2 0.11
25 9 0.47
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.54
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATCC
Found at i:94244786 original size:46 final size:46
Alignment explanation
Indices: 94244726--94245159 Score: 540
Period size: 46 Copynumber: 10.0 Consensus size: 46
94244716 TTTGACGTGA
* * * * * *
94244726 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
94244772 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
94244818 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
94244864 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94244910 TGCCATGGTATCTTTCAACCATGGTCTTACACA---C--A--A-GT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94244948 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94244994 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
94245032 TTCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
94245078 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
94245116 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
94245160 AGAGCACACT
Statistics
Matches: 345, Mismatches: 18, Indels: 50
0.84 0.04 0.12
Matches are distributed among these distances:
38 100 0.29
39 3 0.01
40 5 0.01
41 4 0.01
43 4 0.01
44 6 0.02
45 7 0.02
46 216 0.63
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:94244959 original size:38 final size:38
Alignment explanation
Indices: 94244908--94245145 Score: 305
Period size: 38 Copynumber: 5.8 Consensus size: 38
94244898 TTCATATCAG
94244908 GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
94244946 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA---C--A--A
*
94244991 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
1 -GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
*
94245030 GTTTCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA---C--A--A
*
94245075 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
1 -GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
94245114 GTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTAC
94245146 TCATTTCATA
Statistics
Matches: 179, Mismatches: 5, Indels: 32
0.83 0.02 0.15
Matches are distributed among these distances:
38 101 0.56
41 4 0.02
43 4 0.02
45 1 0.01
46 69 0.39
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (38 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
Found at i:94245003 original size:84 final size:84
Alignment explanation
Indices: 94244859--94245159 Score: 557
Period size: 84 Copynumber: 3.6 Consensus size: 84
94244849 CATCTCATAT
*
94244859 CAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
94244924 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
*
94244943 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
94245008 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
* *
94245027 CAGGTTTCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
94245092 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
*
94245111 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
94245160 AGAGCACACT
Statistics
Matches: 209, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 209 1.00
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
TCAACCATGGTCTTACACA
Found at i:94245101 original size:168 final size:172
Alignment explanation
Indices: 94244770--94245159 Score: 635
Period size: 168 Copynumber: 2.3 Consensus size: 172
94244760 TTTCTGTCAT
* * * *
94244770 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCA
*
94244835 ACCATGGTCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTT
66 ACCATGGTCTTA-ACA--TCA-ATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTC
94244900 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
127 CATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
*
94244946 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCA
* *
94245011 ACCATGGTCTT-ACA-C-A-CAGGTTTCCATGGTATCTTTCAACCATGGTCTTACACATTCCATA
66 ACCATGGTCTTAACATCAATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTCCATA
*
94245072 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAG
131 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
94245114 GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
94245160 AGAGCACACT
Statistics
Matches: 204, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
168 128 0.63
169 1 0.00
171 1 0.00
174 3 0.01
176 71 0.35
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (172 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTAACATCAATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACATTCCATA
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACACAA
Found at i:94247317 original size:24 final size:24
Alignment explanation
Indices: 94247281--94247361 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
94247271 TTCTTTCTTT
94247281 ATATACTAATAAAATAATAATAAA
1 ATATACTAATAAAATAATAATAAA
* * *
94247305 ATATATTATTAAAGTATTAATAAATAAT
1 ATATACTAATAAA--A-TAAT-AATAAA
* * *
94247333 ATTTATCTAATTAAATAATTATAAA
1 ATATA-CTAATAAAATAATAATAAA
94247358 ATAT
1 ATAT
94247362 CAAAATATCT
Statistics
Matches: 42, Mismatches: 10, Indels: 9
0.69 0.16 0.15
Matches are distributed among these distances:
24 11 0.26
25 7 0.17
26 5 0.12
27 5 0.12
28 9 0.21
29 5 0.12
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (24 bp):
ATATACTAATAAAATAATAATAAA
Found at i:94248512 original size:206 final size:206
Alignment explanation
Indices: 94248154--94248619 Score: 817
Period size: 206 Copynumber: 2.3 Consensus size: 206
94248144 GATCGGGCTA
*
94248154 AAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
*
94248218 TTGGCTTTCGCGTGCTTACGCTAAAGAAAGTATAAGATGATTTGACATCTTTATATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGAAAGTATAAGATGATTTGACATCTCTATATTGTCAGAGA
94248283 ACAAGTCGAAATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
*
94248348 TGTTTATACTG
196 TGTTTATACCG
*
94248359 AAGCAAGATCCAAGATAATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
* * * *
94248424 TTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCGCGTGCTTACGCTAAAGAAAGTATAAGATGATTTGACATCTCTATATTGTCAGAGA
*
94248489 ACAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
131 ACAAGTCGAAATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
94248554 TGTTTATACCG
196 TGTTTATACCG
* * *
94248565 AAGTAAGATCCAAGATGATTTGGCATCATTGTGCTTACAAGGAACAAATCGAAGA
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGA
94248620 AGCAGATTTG
Statistics
Matches: 247, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
205 4 0.02
206 243 0.98
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGAT
TTGGCTTTCGCGTGCTTACGCTAAAGAAAGTATAAGATGATTTGACATCTCTATATTGTCAGAGA
ACAAGTCGAAATCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGA
TGTTTATACCG
Found at i:94248803 original size:45 final size:46
Alignment explanation
Indices: 94248707--94248803 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 46
94248697 AAATTGACAA
* **
94248707 AGCAAATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCGGAGATT
1 AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
* *
94248753 A-CAGATTTGGCGTCTCTGTATTAGACGGGTAGCAGATCAAAGA-T
1 AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
94248797 AGCAGAT
1 AGCAGAT
94248804 ATCGCTTTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
44 2 0.04
45 42 0.93
46 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (46 bp):
AGCAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCAAAGATT
Found at i:94249015 original size:15 final size:15
Alignment explanation
Indices: 94248988--94249033 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
94248978 ATTTTGCCCT
94248988 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
94249004 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
94249019 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
94249034 ACCTTCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:94249133 original size:13 final size:13
Alignment explanation
Indices: 94249115--94249172 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
94249105 TCTTCACTCC
94249115 AACCACCCCACTA
1 AACCACCCCACTA
*
94249128 AACCACTCCACTA
1 AACCACCCCACTA
*
94249141 AACCA---CTCT-
1 AACCACCCCACTA
94249150 AACCACCCCACTA
1 AACCACCCCACTA
*
94249163 AACCATCCCA
1 AACCACCCCA
94249173 ACCACTCCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 5 0.14
10 3 0.08
12 3 0.08
13 26 0.70
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (13 bp):
AACCACCCCACTA
Found at i:94249153 original size:22 final size:22
Alignment explanation
Indices: 94249128--94249183 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
94249118 CACCCCACTA
*
94249128 AACCACTCCACTAAACCA-CTCT
1 AACCACTCCACTAAACCATC-CC
*
94249150 AACCACCCCACTAAACCATCCC
1 AACCACTCCACTAAACCATCCC
94249172 AACCACTCCACT
1 AACCACTCCACT
94249184 TGCCGACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCACTCCACTAAACCATCCC
Found at i:94249582 original size:19 final size:18
Alignment explanation
Indices: 94249545--94249586 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
94249535 GGAGAGAGTG
*
94249545 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
94249563 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
94249582 TTATT
1 TTATT
94249587 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:94249645 original size:33 final size:38
Alignment explanation
Indices: 94249571--94249652 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
94249561 TATTATTTTC
*
94249571 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCAC-ATTATCATCAT
*
94249610 TATTACTATTA-TATTA-TAATACC-C-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACATTATCATCAT
94249643 TATTACTATT
1 TATTACTATT
94249653 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
36 1 0.02
37 7 0.17
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.15, G:0.00, T:0.51
Consensus pattern (38 bp):
TATTACTATTATTATTACTAATACCACATTATCATCAT
Found at i:94249931 original size:25 final size:23
Alignment explanation
Indices: 94249903--94249959 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
94249893 ACCTTCGTAT
94249903 TTATCGTTATT-ATTTGTTTATCTTG
1 TTATCGTTATTGA-TT-TTTAT-TTG
*
94249928 TTATAGTTATTGATTTTTATTTG
1 TTATCGTTATTGATTTTTATTTG
94249951 TTATGCGTT
1 TTAT-CGTT
94249960 CTTTATTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 8 0.29
25 12 0.43
26 1 0.04
ACGTcount: A:0.18, C:0.05, G:0.14, T:0.63
Consensus pattern (23 bp):
TTATCGTTATTGATTTTTATTTG
Found at i:94252817 original size:22 final size:23
Alignment explanation
Indices: 94252792--94252854 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 23
94252782 TCTCTTTTAA
94252792 TTAATTAAT-TAA-AAATATATTT
1 TTAATTAATATAATAAA-ATATTT
*
94252814 TTAATTGATATAATAAAATA--T
1 TTAATTAATATAATAAAATATTT
94252835 TT-A--AATATAATAAAATATTT
1 TTAATTAATATAATAAAATATTT
94252855 ACTTTTCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
18 13 0.37
20 2 0.06
21 3 0.09
22 8 0.23
23 6 0.17
24 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (23 bp):
TTAATTAATATAATAAAATATTT
Found at i:94252844 original size:18 final size:18
Alignment explanation
Indices: 94252821--94252855 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
94252811 TTTTTAATTG
94252821 ATATAATAAAATATTTAA
1 ATATAATAAAATATTTAA
94252839 ATATAATAAAATATTTA
1 ATATAATAAAATATTTA
94252856 CTTTTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAATAAAATATTTAA
Found at i:94255402 original size:26 final size:26
Alignment explanation
Indices: 94255366--94255452 Score: 84
Period size: 26 Copynumber: 3.2 Consensus size: 26
94255356 ACCAACATCC
*
94255366 AATTGAATGTTTGTTATTATATTTTT
1 AATTTAATGTTTGTTATTATATTTTT
* * * *
94255392 AATTTAGTGTTACTATTAATATTGTTTTT
1 AATTTAATGTT--TGTTATTA-TATTTTT
* *
94255421 AATGTAATATTTGTTATTATATTTTT
1 AATTTAATGTTTGTTATTATATTTTT
94255447 AATTTA
1 AATTTA
94255453 TTAATTGAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
26 20 0.43
27 6 0.13
28 6 0.13
29 14 0.30
ACGTcount: A:0.30, C:0.01, G:0.09, T:0.60
Consensus pattern (26 bp):
AATTTAATGTTTGTTATTATATTTTT
Found at i:94255790 original size:17 final size:15
Alignment explanation
Indices: 94255751--94255807 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
94255741 TAAAGTCAAC
94255751 ACTTAATTTTTTTAAT
1 ACTT-ATTTTTTTAAT
94255767 ACTTATTTTTTTAAT
1 ACTTATTTTTTTAAT
* * * *
94255782 ATTTATATTTTCAAC
1 ACTTATTTTTTTAAT
*
94255797 ACTGATTTTTT
1 ACTTATTTTTT
94255808 CATTTTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (15 bp):
ACTTATTTTTTTAAT
Found at i:94265783 original size:24 final size:24
Alignment explanation
Indices: 94265738--94265783 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
94265728 TATATGAAAT
* * *
94265738 ATAAATTTTAAATATTTTTAAACA
1 ATAAATATTAAATACTTATAAACA
*
94265762 ATAAATATTAATTACTTATAAA
1 ATAAATATTAAATACTTATAAA
94265784 TTTTAATTAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (24 bp):
ATAAATATTAAATACTTATAAACA
Found at i:94266933 original size:41 final size:41
Alignment explanation
Indices: 94266854--94267073 Score: 327
Period size: 41 Copynumber: 5.4 Consensus size: 41
94266844 CGTTTTTTAC
* * **
94266854 TAAAATGCCGCTAAAAA-TAGAGAATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* *
94266894 TAAAACGCCGCTAAAAACCATATCATTAGCGGCGCTTTAGT
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
94266935 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTT-GG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
*
94266975 TTAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTGGG
1 -TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* * *
94267017 TAAAACGCCGCTAAAAACCAGACCATTAGTGGCGCTTTGGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
94267058 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
94267074 GTCATAAACC
Statistics
Matches: 167, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
40 17 0.10
41 148 0.89
42 2 0.01
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
Found at i:94267500 original size:25 final size:25
Alignment explanation
Indices: 94267471--94267522 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
94267461 GTGATTTTGA
94267471 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
*
94267496 ATGTGGAATTAGCATTTGTTTAACT
1 ATGTGGAATTAGCATTTGTTGAACT
94267521 AT
1 AT
94267523 TAGCTAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (25 bp):
ATGTGGAATTAGCATTTGTTGAACT
Found at i:94267840 original size:22 final size:22
Alignment explanation
Indices: 94267815--94267856 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
94267805 TGTGTTTGTG
94267815 GTCTAAGGTTTAGGGGTTTAGA
1 GTCTAAGGTTTAGGGGTTTAGA
* *
94267837 GTCTCAGGTTTAGGGTTTTA
1 GTCTAAGGTTTAGGGGTTTA
94267857 AATTTAGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.07, G:0.33, T:0.40
Consensus pattern (22 bp):
GTCTAAGGTTTAGGGGTTTAGA
Found at i:94267909 original size:15 final size:15
Alignment explanation
Indices: 94267889--94267918 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94267879 TTTAATTTAG
*
94267889 AAGATAAATGTATAT
1 AAGATAAATATATAT
94267904 AAGATAAATATATAT
1 AAGATAAATATATAT
94267919 TATTATTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:94269989 original size:43 final size:44
Alignment explanation
Indices: 94269920--94270135 Score: 287
Period size: 43 Copynumber: 5.0 Consensus size: 44
94269910 TTGGGCAAAT
* *
94269920 TAGCGGCGTTTTTTTGCAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
94269964 TAGCGGCG-TTTTTTACAGAAGCGCCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTAC-AGGTCTA
*
94270007 TAGCGGCGCTTTTTTACAAAAGCGTCGCTAAAAGTACAGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
* * * *
94270051 TAGCGGCG-TTTTTTACAGAAGCACCGCT-AAAGTTCTTGGTCTA
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTAC-AGGTCTA
*
94270094 TAGCGGCGCTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTC
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTC
94270136 CTGGTCTTTG
Statistics
Matches: 148, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
42 12 0.08
43 63 0.43
44 61 0.41
45 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (44 bp):
TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:94270066 original size:87 final size:87
Alignment explanation
Indices: 94269920--94270135 Score: 387
Period size: 87 Copynumber: 2.5 Consensus size: 87
94269910 TTGGGCAAAT
* *
94269920 TAGCGGCGTTTTTTTGCAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
*
94269985 CGCCGCTAAAGTTCTTGGTCTA
66 CACCGCTAAAGTTCTTGGTCTA
*
94270007 TAGCGGCGCTTTTTTACAAAAGCGTCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
94270072 CACCGCTAAAGTTCTTGGTCTA
66 CACCGCTAAAGTTCTTGGTCTA
*
94270094 TAGCGGCGCTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTC
1 TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTC
94270136 CTGGTCTTTG
Statistics
Matches: 123, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 123 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (87 bp):
TAGCGGCGCTTTTTTACAAAAGCGCCGCTAAAAGTACAGGTCTATAGCGGCGTTTTTTACAGAAG
CACCGCTAAAGTTCTTGGTCTA
Found at i:94271060 original size:25 final size:23
Alignment explanation
Indices: 94271031--94271076 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
94271021 AATAAAAAAT
*
94271031 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAAT-AAATACA
94271056 TTTAAAACATAAAAATAAATA
1 TTTAAAACATAAAAATAAATA
94271077 TTAAACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (23 bp):
TTTAAAACATAAAAATAAATACA
Found at i:94271202 original size:12 final size:12
Alignment explanation
Indices: 94271180--94271208 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
94271170 AAACTAAAAC
94271180 AAATT-AGAACT
1 AAATTAAGAACT
94271191 AAATTAAGAACT
1 AAATTAAGAACT
94271203 AAATTA
1 AAATTA
94271209 TATATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (12 bp):
AAATTAAGAACT
Found at i:94271314 original size:9 final size:10
Alignment explanation
Indices: 94271294--94271320 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
94271284 AAAGTTACTT
94271294 AAAATTTAAA
1 AAAATTTAAA
94271304 AAAATTTAAA
1 AAAATTTAAA
94271314 AAAATTT
1 AAAATTT
94271321 TAATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:94272866 original size:42 final size:42
Alignment explanation
Indices: 94272819--94272932 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
94272809 CGTGTTTTAC
* ***
94272819 TTTCTGTTTAGCTCTTACTTTCTTCCGTTAAACT-TATACGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCT-TACGAG
* * *
94272861 TTTCTGTTCAGCTCTTACGAGCTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCTTACGAG
* *
94272903 TTTCTGTTCAGCTCTTGCGAGCTTCTGTTA
1 TTTCTGTTCAGCTCTTACGAGCTTCCGTTA
94272933 GCTTTCGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 61 0.98
43 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.16, T:0.46
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTACGAGCTTCCGTTAAACTCTTACGAG
Found at i:94272880 original size:21 final size:21
Alignment explanation
Indices: 94272855--94272949 Score: 124
Period size: 21 Copynumber: 4.7 Consensus size: 21
94272845 GTTAAACTTA
*
94272855 TACGAGTTTCTGTTCAGCTCT
1 TACGAGCTTCTGTTCAGCTCT
*
94272876 TACGAGCTTCTGTTCAACTCT
1 TACGAGCTTCTGTTCAGCTCT
* *
94272897 TATGAGTTTCTGTTCAGCTCT
1 TACGAGCTTCTGTTCAGCTCT
*
94272918 TGCGAGCTTCTGTT-AGCT-T
1 TACGAGCTTCTGTTCAGCTCT
94272937 T-CGAGCTTCTGTT
1 TACGAGCTTCTGTT
94272950 AACGTGTACT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
18 12 0.18
19 2 0.03
20 4 0.06
21 48 0.73
ACGTcount: A:0.14, C:0.23, G:0.20, T:0.43
Consensus pattern (21 bp):
TACGAGCTTCTGTTCAGCTCT
Found at i:94275037 original size:13 final size:14
Alignment explanation
Indices: 94275016--94275044 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
94275006 TGAAAAATAG
94275016 ATTAGAAAATATTT
1 ATTAGAAAATATTT
94275030 ATTA-AAAATATTT
1 ATTAGAAAATATTT
94275043 AT
1 AT
94275045 AAAGTTAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
ATTAGAAAATATTT
Found at i:94276075 original size:19 final size:19
Alignment explanation
Indices: 94276034--94276075 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
94276024 ATATACCTTT
*
94276034 TTATATATAGTATCATTTT
1 TTATATATAGTATCATTTA
*
94276053 TTATATATCATTAT-ATTTA
1 TTATATAT-AGTATCATTTA
94276072 TTAT
1 TTAT
94276076 CGTACTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (19 bp):
TTATATATAGTATCATTTA
Found at i:94278633 original size:29 final size:29
Alignment explanation
Indices: 94278599--94278656 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
94278589 CAAAAAACTT
*
94278599 ATATATATAATTATCATTTTTTAATTTTTTG
1 ATAT-TATAATAATCATTTTTT-ATTTTTTG
* *
94278630 ATATTATTATAATTATTTTTTATTTTT
1 ATATTATAATAATCATTTTTTATTTTT
94278657 ATCTAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 6 0.25
30 14 0.58
31 4 0.17
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (29 bp):
ATATTATAATAATCATTTTTTATTTTTTG
Found at i:94279200 original size:24 final size:25
Alignment explanation
Indices: 94279169--94279240 Score: 130
Period size: 24 Copynumber: 3.0 Consensus size: 25
94279159 CCCTCCCAAA
94279169 AAAAAACCTAA-CCAAAAAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAAG
94279193 AAAAAACCTAACCCAAAAAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAAG
94279218 -AAAAACCTAACCCAAAAAAAAAA
1 AAAAAACCTAACCCAAAAAAAAAA
94279241 CCAAGAAACC
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
24 34 0.72
25 13 0.28
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (25 bp):
AAAAAACCTAACCCAAAAAAAAAAG
Found at i:94290224 original size:69 final size:70
Alignment explanation
Indices: 94290056--94290224 Score: 232
Period size: 71 Copynumber: 2.4 Consensus size: 70
94290046 AGAAAAATCA
* * *
94290056 ACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTTGTTTTCA
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTATGTTTT-A
94290121 AAATTG
65 AAATTG
* ** * * *
94290127 ACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTATGTTTT-A
1 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTATGTTTTAA
94290191 AATTG
66 AATTG
*
94290196 ACTCATATTGCGAGAGGTGAGTTAAGCCT
1 ACTCATATTGCGAGAGGTGAGTTGAGCCT
94290225 TTTAATTTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
69 33 0.38
71 54 0.62
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (70 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGACGAGGTATTTTTAATTTATGTTTTAA
AATTG
Found at i:94290345 original size:72 final size:73
Alignment explanation
Indices: 94290228--94290418 Score: 244
Period size: 72 Copynumber: 2.6 Consensus size: 73
94290218 TAAGCCTTTT
* * * * * * *
94290228 AATTTTTGTTTTTCAA-AATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAG
1 AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
*
94290292 GTATTTTC
66 GTAATTTC
* *
94290300 AATTTTTGTGTTCT-AA-TATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
1 AATTTCTGT-TTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGA
94290363 GGTAATTTC
65 GGTAATTTC
* *
94290372 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGA
94290419 ACCTTTTAAT
Statistics
Matches: 104, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
71 3 0.03
72 70 0.67
73 31 0.30
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.34
Consensus pattern (73 bp):
AATTTCTGTTTCTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
GTAATTTC
Found at i:94290468 original size:199 final size:194
Alignment explanation
Indices: 94290049--94290576 Score: 709
Period size: 199 Copynumber: 2.7 Consensus size: 194
94290039 CTTTTCAAGA
* * ** * * *
94290049 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGATGAGGTATTTTTAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* * ** * * * *
94290114 GTTTTC-AAAATTGACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
66 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
* ** **
94290178 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 AATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
*
94290242 AAAATCAGCCCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
** *
94290307 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTC
66 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
* *
94290372 AATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTTCTACT
131 AATTTATGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACT
94290436 TTTTC
190 TTTTC
*
94290441 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCATGCTGAGGTATTTTCAATTTTT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
* *
94290506 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
66 GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCCGAGGTATTT
94290571 TCAATT
129 TCAATT
94290577 AAGCCTTTCA
Statistics
Matches: 293, Mismatches: 33, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
193 62 0.21
194 57 0.19
195 1 0.00
197 1 0.00
198 36 0.12
199 117 0.40
201 19 0.06
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.35
Consensus pattern (194 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
GTGTTCTAATATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCCGAGGTATTTTC
AATTTATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTC
Found at i:94290663 original size:87 final size:89
Alignment explanation
Indices: 94290517--94290721 Score: 283
Period size: 89 Copynumber: 2.3 Consensus size: 89
94290507 TGTTTTAATT
94290517 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA-TTAAGC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACAC-CCGAGGTATTTTCAATTTAAG-
*
94290581 CTTTCA-ATTTCTGTCTTTT-AAAAAA
64 CTTTCATATTTATGT-TTTTGAAAAAA
** *
94290606 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACA-CCGAGGTATTTTCAATTTCTGTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTATTTTCAATTTAAGCT
* *
94290670 TTCATTTTTATGTTTTTGAAAGAA
66 TTCATATTTATGTTTTTGAAAAAA
* *
94290694 TCAACTCATATTGCGAGAAGTGGGTTGA
1 TCAACTCATATTGCGAGAGGTGAGTTGA
94290722 ACCTTTTAAT
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
87 24 0.23
88 40 0.38
89 41 0.39
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (89 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCCGAGGTATTTTCAATTTAAGCT
TTCATATTTATGTTTTTGAAAAAA
Found at i:94290892 original size:140 final size:142
Alignment explanation
Indices: 94290602--94290916 Score: 526
Period size: 140 Copynumber: 2.2 Consensus size: 142
94290592 TGTCTTTTAA
* * *
94290602 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTATTTTCAATTTCT
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTAGTTTCAATTTCC
* *
94290667 GTTTTCATTTTTATGTTTTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
66 GTTTTCATATTTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
94290732 TTCTACTTTTTC
131 TTCTACTTTTTC
* *
94290744 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTAGTTTCAATTTCC
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTAGTTTCAATTTCC
* *
94290809 GTTTTCA-ATTTATGTTGTT-CAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAAT
66 GTTTTCATATTTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
94290872 TTCTACTTTTTC
131 TTCTACTTTTTC
*
94290884 AAAATCAGCTCATATTGCGAGAGGTGAGGTGAG
1 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAG
94290917 TTGAGCCTCG
Statistics
Matches: 163, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
140 86 0.53
141 10 0.06
142 67 0.41
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (142 bp):
AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGAGGTAGTTTCAATTTCC
GTTTTCATATTTATGTTGTTGAAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAAT
TTCTACTTTTTC
Found at i:94291058 original size:72 final size:73
Alignment explanation
Indices: 94290931--94291108 Score: 277
Period size: 72 Copynumber: 2.4 Consensus size: 73
94290921 GCCTCGGTTT
* *
94290931 ACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATTCAACTCATATTGCGAGAAATGA
1 ACATGTTGAGGTAATTTCAATTTCTGT-TTTC----AAAAATTCAACTCATATTGCGAGAAATGA
94290996 GTTGAGCCTCAAG
61 GTTGAGCCTCAAG
94291009 ACATGTTGAGGTAATTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGA
1 ACATGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGA
94291073 GCCTCAAG
66 GCCTCAAG
*
94291081 ACACGTTGAGGTAATTTCAATTTCTGTT
1 ACATGTTGAGGTAATTTCAATTTCTGTT
94291109 CAAAATGAGT
Statistics
Matches: 97, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
72 68 0.70
77 4 0.04
78 25 0.26
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (73 bp):
ACATGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGA
GCCTCAAG
Found at i:94291119 original size:49 final size:49
Alignment explanation
Indices: 94291062--94291157 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
94291052 ATATTGCGAG
*
94291062 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
94291111 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
94291158 TACAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:94291204 original size:121 final size:121
Alignment explanation
Indices: 94290990--94291229 Score: 426
Period size: 121 Copynumber: 2.0 Consensus size: 121
94290980 ATATTGCGAG
* * *
94290990 AAATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTACAAAATTCAACTCATA
*
94291055 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
94291111 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTACAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTACAAAATTCAACTCATA
* *
94291176 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
94291230 TTCAAAATTC
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
121 113 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTACAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:94291343 original size:78 final size:75
Alignment explanation
Indices: 94291111--94291462 Score: 482
Period size: 72 Copynumber: 4.7 Consensus size: 75
94291101 TTTCTGTTCA
* * * *
94291111 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG--TTT-ACAAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
94291173 ATATTGCGAG
66 ATATTGCGAG
* * *
94291183 AAATTAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
94291245 ATATTGCGAG
66 ATATTGCGAG
*
94291255 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTC---AAAAAAATCAA
*
94291320 CTCATATTGTGAG
63 CTCATATTGCGAG
*
94291333 AAATGAGTTGAGCCTCAAGACATGCTAAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
94291398 ATATTGCGAG
66 ATATTGCGAG
** * * *
94291408 AGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACATGCTGAGGTATTTTCAATTTCTGTTTTTCAA
94291463 TTTCTGCCTT
Statistics
Matches: 256, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
72 109 0.43
73 8 0.03
75 39 0.15
77 31 0.12
78 69 0.27
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (75 bp):
AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
ATATTGCGAG
Found at i:94291381 original size:150 final size:151
Alignment explanation
Indices: 94291111--94291670 Score: 510
Period size: 168 Copynumber: 3.6 Consensus size: 151
94291101 TTTCTGTTCA
* * *
94291111 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG--TTT---ACAAAATTCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
* *
94291171 TCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTAATTTCAATTTCTG-TTTTC-A
66 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTAAGGTAATTTCAATTTCTGTTTTTCAA
*
94291234 AAATTCAACTCATATTGCGAG
131 AAAATCAACTCATATTGCGAG
* *
94291255 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTC-AAAAAAAAATCAA
* *
94291320 CTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTAAGGTATTTTCAATTTCTGTTTTTCA
65 CTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTAAGGTAATTTCAATTTCTGTTTTTC-
94291385 AAAAAATCAACTCATATTGCGAG
129 AAAAAATCAACTCATATTGCGAG
** * *
94291408 AGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTT
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTTCAATTTCTGTTTTTCAA----------
** ** ** * * *
94291473 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGCGCTGAGCTATTTT
54 --AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACATGCTAAGGTAATTT
* *
94291537 CAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAG
114 CAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAG
** * * * * * *
94291576 AGGTGAGTTGAGCTTTAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTC--AAAAAAAT
1 AAATGAGTTGAGCCTCA-A-GACACGCTGAGGTA--TTTTCAATTTCTGTTTTTCAAAAAAAAAT
* **
94291639 CAACTCACATTGCGAGATGTGAGTTGAGCCTC
62 CAACTCATATTGCGAGAAATGAGTTGAGCCTC
94291671 GGGTCACATG
Statistics
Matches: 349, Mismatches: 37, Indels: 51
0.80 0.08 0.12
Matches are distributed among these distances:
144 42 0.12
146 3 0.01
150 63 0.18
151 5 0.01
153 37 0.11
154 2 0.01
155 31 0.09
156 36 0.10
166 35 0.10
167 1 0.00
168 76 0.22
169 1 0.00
170 17 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (151 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAATCAAC
TCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTAAGGTAATTTCAATTTCTGTTTTTCAA
AAAATCAACTCATATTGCGAG
Found at i:94291461 original size:14 final size:14
Alignment explanation
Indices: 94291442--94291468 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
94291432 CGCCGAGGTA
94291442 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
94291456 TTTTCAATTTCTG
1 TTTTCAATTTCTG
94291469 CCTTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:94291474 original size:14 final size:14
Alignment explanation
Indices: 94291443--94291476 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
94291433 GCCGAGGTAT
**
94291443 TTTCAATTTCTGTT
1 TTTCAATTTCTGCC
94291457 TTTCAATTTCTGCC
1 TTTCAATTTCTGCC
94291471 TTTCAA
1 TTTCAA
94291477 AAAAATCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (14 bp):
TTTCAATTTCTGCC
Found at i:94291535 original size:91 final size:91
Alignment explanation
Indices: 94291365--94291553 Score: 290
Period size: 91 Copynumber: 2.1 Consensus size: 91
94291355 TGCTAAGGTA
**
94291365 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* *
94291430 CACGCCGAGGTATTTTCAATTTCTGT
66 CACGCCGAGCTATTTTCAATTTCTAT
*
94291456 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTC
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TC
* *
94291520 ACGCGCTGAGCTATTTTCAATTTCTAT
65 ACACGCCGAGCTATTTTCAATTTCTAT
*
94291547 CTTTCAA
1 TTTTCAA
94291554 AAAAATCAAC
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
90 2 0.02
91 87 0.98
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
CACGCCGAGCTATTTTCAATTTCTAT
Found at i:94291537 original size:77 final size:77
Alignment explanation
Indices: 94291456--94292047 Score: 386
Period size: 88 Copynumber: 7.2 Consensus size: 77
94291446 CAATTTCTGT
**
94291456 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* *
94291521 CGCGCTGAGCTA
66 CACACTGAGCTA
* * * * *
94291533 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
*
94291598 CACACTGAGGTA
66 CACACTGAGCTA
* * * * * *
94291610 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
** *
94291675 CACA-TGTCGAGGTA
64 CACACACT-GAGCTA
** *
94291689 TTTTCAAAATCTGTTTTTCAAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
**
94291754 GCCTTGGCTCACGTACTGAGCTA
55 GCCTTGGCTCACACACTGAGCTA
*
94291777 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
1 TTTTCAATTTCTG---TTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTT
*** * * * **
94291842 AATTTCTGCGAGAGTTGAATTGA
60 -GGCTC-AC-ACA-CTGAGCT-A
* * **
94291865 GTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-
1 -T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
* *
94291927 TCACATA-TCGAGGTA
63 TCACACACT-GAGCTA
*
94291942 TTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
94292006 AGTCTTGGCTCACGCGCTGAGCTA
54 AGCCTTGGCTCACACACTGAGCTA
94292030 TTTTCAATTTCTGTTTTT
1 TTTTCAATTTCTGTTTTT
94292048 AGAGAGTCAA
Statistics
Matches: 407, Mismatches: 63, Indels: 91
0.73 0.11 0.16
Matches are distributed among these distances:
75 3 0.01
76 4 0.01
77 88 0.22
78 6 0.01
79 70 0.17
80 10 0.02
81 31 0.08
82 2 0.00
83 6 0.01
84 34 0.08
85 6 0.01
86 3 0.01
87 15 0.04
88 107 0.26
89 3 0.01
90 13 0.03
91 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACACTGAGCTA
Found at i:94291664 original size:79 final size:77
Alignment explanation
Indices: 94291456--94291836 Score: 305
Period size: 77 Copynumber: 4.7 Consensus size: 77
94291446 CAATTTCTGT
* ** * *
94291456 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
* *
94291521 CGCGCTGAGCTA
66 CACACTGAGCTA
* *
94291533 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTAGATCA
1 TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
*
94291598 CACACTGAGGTA
66 CACACTGAGCTA
* * * ** *
94291610 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGAT
** *
94291675 CACA-TGTCGAGGTA
64 CACACACT-GAGCTA
* * *** *
94291689 TTTTCAAAATCTGTTTTTCAAATTTTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AA------TTT-ATA-TCT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * **
94291754 GCCTTGGCTCACGTACTGAGCTA
55 GCCTTAGATCACACACTGAGCTA
* * *
94291777 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAA-TT-T-ATATCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
94291837 TTTTTAATTT
Statistics
Matches: 249, Mismatches: 38, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
77 74 0.30
78 1 0.00
79 67 0.27
80 7 0.03
81 35 0.14
82 1 0.00
85 3 0.01
86 4 0.02
87 3 0.01
88 53 0.21
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (77 bp):
TTTTCAATTTATATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGATCA
CACACTGAGCTA
Found at i:94291854 original size:30 final size:30
Alignment explanation
Indices: 94291818--94291879 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
94291808 CAACTCATAT
*
94291818 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAATTGAGTC-TTTTAATTTC
*
94291848 TGCGAGAGTTGAATTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAATTGAGTCTTTTAATTTC
94291878 TG
1 TG
94291880 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAATTGAGTCTTTTAATTTC
Found at i:94291962 original size:253 final size:246
Alignment explanation
Indices: 94291278--94292047 Score: 902
Period size: 253 Copynumber: 3.1 Consensus size: 246
94291268 CTCAAGACAT
* **** * **
94291278 GCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTG
1 GCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * **
94291343 AGCCTCA-A-GACATGCT-AAGGTA--TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATT
66 AGCTTTAGATCACACACTGAA-GTATCTTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATT
* * **
94291403 GCGAGAGGTGAGTTGAGCCT-CAGGTCACACGCCGAGGTATTTTCAATTTCTGTTTTTC-AATTT
129 GCGAGAGGTGAGTTGAGCCTCCA-GTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTT
94291466 CTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
193 -TG--TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
* *
94291524 GCTGAGCTATTTTCAATTTC---TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 GCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * *
94291586 AGCTTTAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTG
66 AGCTTTAGATCACACACTGAAGTATCTTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTG
* **
94291651 CGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTTTG
130 CGAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTTTG
* *
94291716 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
195 -TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
94291768 ACTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTT
1 GCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTT
* * * *
94291833 GAGCTTTTTA-ATTTCTGCGAGAGTTGAATTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAA
65 GAGC--TTTAGA--TC-AC-ACA-CTGAAGT-A-TCTTTTCAATTTCTGTTTTTCAAAAAATCAA
* * *
94291895 CTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTT
121 CTCATATTGCGAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTT
* ** *
94291960 CAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTTGGCTCACGC
186 CAAATTTTGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
94292021 GCTGAGCTATTTTCAATTTCTGTTTTT
1 GCTGAGCTATTTTCAATTTCTGTTTTT
94292048 AGAGAGTCAA
Statistics
Matches: 449, Mismatches: 54, Indels: 35
0.83 0.10 0.07
Matches are distributed among these distances:
243 38 0.08
244 65 0.14
245 8 0.02
246 24 0.05
247 100 0.22
248 35 0.08
249 1 0.00
250 4 0.01
251 2 0.00
252 5 0.01
253 145 0.32
254 4 0.01
255 13 0.03
256 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (246 bp):
GCTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
AGCTTTAGATCACACACTGAAGTATCTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGC
GAGAGGTGAGTTGAGCCTCCAGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTTTGT
TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
Found at i:94292715 original size:18 final size:18
Alignment explanation
Indices: 94292692--94292759 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
94292682 GCCCTCCCCC
94292692 AAAAAAAAACCTAACCAA
1 AAAAAAAAACCTAACCAA
**
94292710 AAAAAAAAA-AGAA--AA
1 AAAAAAAAACCTAACCAA
*
94292725 AAGAAAAAAACCTAACCCA
1 AA-AAAAAAACCTAACCAA
94292744 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
94292760 CCCCCCAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 4 0.10
16 7 0.17
17 4 0.10
18 23 0.56
19 3 0.07
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (18 bp):
AAAAAAAAACCTAACCAA
Found at i:94292760 original size:18 final size:17
Alignment explanation
Indices: 94292692--94292759 Score: 75
Period size: 17 Copynumber: 3.9 Consensus size: 17
94292682 GCCCTCCCCC
94292692 AAAAAAAAACCTAACCA
1 AAAAAAAAACCTAACCA
*** *
94292709 AAAAAAAAAAAGAA-AA
1 AAAAAAAAACCTAACCA
94292725 AAGAAAAAAACCTAACCCA
1 AA-AAAAAAACCTAA-CCA
94292744 AAAAAAAAACCTAACC
1 AAAAAAAAACCTAACC
94292760 CCCCCCAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
16 3 0.08
17 22 0.55
18 12 0.30
19 3 0.08
ACGTcount: A:0.74, C:0.19, G:0.03, T:0.04
Consensus pattern (17 bp):
AAAAAAAAACCTAACCA
Found at i:94294530 original size:12 final size:12
Alignment explanation
Indices: 94294506--94294544 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
94294496 TAAAAATATC
94294506 ATAAACAAA-CAA
1 ATAAA-AAATCAA
94294518 ATAAAAAATCAA
1 ATAAAAAATCAA
94294530 ATAAAAAATCAA
1 ATAAAAAATCAA
94294542 ATA
1 ATA
94294545 TTCTCCTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.74, C:0.10, G:0.00, T:0.15
Consensus pattern (12 bp):
ATAAAAAATCAA
Found at i:94297682 original size:37 final size:37
Alignment explanation
Indices: 94297641--94297722 Score: 87
Period size: 37 Copynumber: 2.2 Consensus size: 37
94297631 TATTAAACTA
94297641 TAATTATAAAAATA-AATTTT-AATTTTTATAATATTTT
1 TAATTATAAAAATATAATTTTCAATTTTTA-AA-ATTTT
* * * *
94297678 TAATTTTATACATATTATTTTCAATTTTTAAAATTTT
1 TAATTATAAAAATATAATTTTCAATTTTTAAAATTTT
*
94297715 AAATTATA
1 TAATTATA
94297723 CTTTTCAGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
37 22 0.59
38 7 0.19
39 8 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (37 bp):
TAATTATAAAAATATAATTTTCAATTTTTAAAATTTT
Found at i:94297684 original size:17 final size:19
Alignment explanation
Indices: 94297657--94297707 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 19
94297647 TAAAAATAAA
94297657 TTTTAATTTTTATA-ATAT
1 TTTTAATTTTTATACATAT
94297675 TTTTAA-TTTTATACATATT
1 TTTTAATTTTTATACATA-T
94297694 ATTTTCAATTTTTA
1 -TTTT-AATTTTTA
94297708 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 7 0.25
18 9 0.32
19 1 0.04
20 4 0.14
21 2 0.07
22 5 0.18
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTAATTTTTATACATAT
Found at i:94297698 original size:21 final size:18
Alignment explanation
Indices: 94297657--94297719 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 18
94297647 TAAAAATAAA
94297657 TTTTAATTTTTATAATAT
1 TTTTAATTTTTATAATAT
94297675 TTTTAA-TTTTATACATATT
1 TTTTAATTTTTATA-ATA-T
94297694 ATTTTCAATTTTTA-AA-AT
1 -TTTT-AATTTTTATAATAT
*
94297712 TTTAAATT
1 TTTTAATT
94297720 ATACTTTTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
16 4 0.10
17 10 0.26
18 10 0.26
19 2 0.05
20 5 0.13
21 3 0.08
22 5 0.13
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAATTTTTATAATAT
Found at i:94297871 original size:21 final size:21
Alignment explanation
Indices: 94297825--94297872 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
94297815 ATCAACGCTT
* *
94297825 AGTCAACATTGATTAACAGTT
1 AGTCAACATTGATTAACAATC
* *
94297846 GGTCAACATTGATTAATAATC
1 AGTCAACATTGATTAACAATC
94297867 AGTCAA
1 AGTCAA
94297873 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.31
Consensus pattern (21 bp):
AGTCAACATTGATTAACAATC
Found at i:94307079 original size:23 final size:23
Alignment explanation
Indices: 94307053--94307101 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
94307043 TATCAAATGC
* *
94307053 TTTTTTTTATAA-AAAAACAATA
1 TTTTTTTTAAAATAAAAAAAATA
94307075 TTTTTTTTAAAATAAAAAAAATA
1 TTTTTTTTAAAATAAAAAAAATA
94307098 TTTT
1 TTTT
94307102 CATATATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 11 0.46
23 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TTTTTTTTAAAATAAAAAAAATA
Found at i:94308448 original size:12 final size:12
Alignment explanation
Indices: 94308431--94308463 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
94308421 CCTATATTGA
94308431 AATTATAATAAT
1 AATTATAATAAT
94308443 AATTATAATAAT
1 AATTATAATAAT
*
94308455 AATAATAAT
1 AATTATAAT
94308464 GAATTCTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATTATAATAAT
Found at i:94309957 original size:20 final size:20
Alignment explanation
Indices: 94309934--94309973 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
94309924 AAAAACCATT
94309934 GAAAAA-AAAGAAGAGATGAA
1 GAAAAATAAA-AAGAGATGAA
*
94309954 GAAAAATAAAAGGAGATGAA
1 GAAAAATAAAAAGAGATGAA
94309974 TAGTTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (20 bp):
GAAAAATAAAAAGAGATGAA
Found at i:94311102 original size:17 final size:19
Alignment explanation
Indices: 94311075--94311132 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 19
94311065 TAAAGTGATA
94311075 AACACTTTAATATTAAATT
1 AACACTTTAATATTAAATT
94311094 AA-A-TTTAATATTAAGA-T
1 AACACTTTAATATTAA-ATT
94311111 AATCACTTTAATATTAAATT
1 AA-CACTTTAATATTAAATT
94311131 AA
1 AA
94311133 TAAAATACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 14 0.41
18 2 0.06
19 4 0.12
20 14 0.41
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (19 bp):
AACACTTTAATATTAAATT
Found at i:94311133 original size:20 final size:20
Alignment explanation
Indices: 94311077--94311133 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
94311067 AAGTGATAAA
94311077 CACTTTAATATTAAATTAA-
1 CACTTTAATATTAAATTAAT
94311096 -A-TTTAATATTAAGA-TAAT
1 CACTTTAATATTAA-ATTAAT
94311114 CACTTTAATATTAAATTAAT
1 CACTTTAATATTAAATTAAT
94311134 AAAATACTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
17 14 0.42
18 2 0.06
19 2 0.06
20 15 0.45
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (20 bp):
CACTTTAATATTAAATTAAT
Found at i:94311175 original size:17 final size:17
Alignment explanation
Indices: 94311083--94311178 Score: 58
Period size: 17 Copynumber: 5.6 Consensus size: 17
94311073 TAAACACTTT
*
94311083 AATATTAAATTAAATTT
1 AATATTAAATTAAATTA
*
94311100 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAA--A-TTA
*
94311120 AATATTAAATT-AATAA
1 AATATTAAATTAAATTA
* *
94311136 AATACT--ATCAAGA-TA
1 AATATTAAATTAA-ATTA
*
94311151 AGTATTAAATTAAATTA
1 AATATTAAATTAAATTA
94311168 AATATTAAATT
1 AATATTAAATT
94311179 TGTTAAAATA
Statistics
Matches: 60, Mismatches: 9, Indels: 20
0.67 0.10 0.22
Matches are distributed among these distances:
14 2 0.03
15 6 0.10
16 8 0.13
17 28 0.47
18 1 0.02
19 3 0.05
20 12 0.20
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:94315581 original size:20 final size:20
Alignment explanation
Indices: 94315556--94315605 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
94315546 TAATTATTTG
*
94315556 TAAAATTTAATTTAAATATA
1 TAAAATATAATTTAAATATA
*
94315576 TAAAATATATTTTAAATAT-
1 TAAAATATAATTTAAATATA
*
94315595 CAAAATATAAT
1 TAAAATATAAT
94315606 CCTTACCAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATATAATTTAAATATA
Found at i:94316648 original size:11 final size:12
Alignment explanation
Indices: 94316612--94316641 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
94316602 CTATCGGACT
*
94316612 AAAAATAACTAA
1 AAAAATAATTAA
94316624 AAAAATAATTAA
1 AAAAATAATTAA
94316636 AAAAAT
1 AAAAAT
94316642 CATAAAAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAAATAATTAA
Found at i:94326671 original size:67 final size:67
Alignment explanation
Indices: 94326578--94326706 Score: 258
Period size: 67 Copynumber: 1.9 Consensus size: 67
94326568 TTAGGTCAAA
94326578 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
1 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
94326643 CC
66 CC
94326645 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAA
1 TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAA
94326707 GCTAGATGAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.64, C:0.06, G:0.09, T:0.21
Consensus pattern (67 bp):
TAAAATAAATGACTAAGATAAATAAAATAAAGTAATAAATCAAAGATTAAAACAATAAAGAATGA
CC
Found at i:94326898 original size:26 final size:27
Alignment explanation
Indices: 94326869--94326919 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
94326859 AAAGATTGTT
94326869 AAAATTCTTTAAAAG-AAAACTCAAGA
1 AAAATTCTTTAAAAGAAAAACTCAAGA
*
94326895 AAAATTTTTTAAAAGAAAAACTCAA
1 AAAATTCTTTAAAAGAAAAACTCAA
94326920 AGAGAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (27 bp):
AAAATTCTTTAAAAGAAAAACTCAAGA
Found at i:94326933 original size:27 final size:26
Alignment explanation
Indices: 94326869--94326933 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
94326859 AAAGATTGTT
94326869 AAAATTCT-TTAAAAGAAAACTCAAGA
1 AAAATT-TATTAAAAGAAAACTCAAGA
*
94326895 AAAATTTTTTAAAAGAAAAACTCAA-A
1 AAAATTTATTAAAAG-AAAACTCAAGA
*
94326921 GAGAATTTATTAA
1 -AAAATTTATTAA
94326934 CTTCAAAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 1 0.03
26 14 0.41
27 19 0.56
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAATTTATTAAAAGAAAACTCAAGA
Found at i:94330949 original size:26 final size:26
Alignment explanation
Indices: 94330920--94331053 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 26
94330910 TGATACAAAT
94330920 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
94330946 TGATAATGAGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
94330972 TTATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94330998 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94331024 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
94331050 TGAT
1 TGAT
94331054 GGGAATTTCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.32, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:94332688 original size:27 final size:28
Alignment explanation
Indices: 94332650--94332728 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
94332640 AGGAAGCATC
94332650 CTGGTGGCTCTGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
94332677 CTGGTGGCTCTGCCAC-ATATATCTGTAT
1 CTGGTGGCTCTGCCACAAT-TATCTGTAT
* * *
94332705 CTGGTGACTCCGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
94332729 GCAGCCTCGC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 28 0.61
28 15 0.33
29 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:94336156 original size:39 final size:39
Alignment explanation
Indices: 94336094--94336250 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
94336084 ATGCAAGACA
*
94336094 CTGGAAATGTAT-CAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
94336132 CTAGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
94336171 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
94336210 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
94336249 CT
1 CT
94336251 TGTAATATAA
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 11 0.10
39 99 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:94337698 original size:53 final size:53
Alignment explanation
Indices: 94337632--94337772 Score: 203
Period size: 53 Copynumber: 2.7 Consensus size: 53
94337622 ATAAGTGCGC
* * *
94337632 CCGTTTAAGACCATAGCTGGGCTATGGCATTGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
* *
94337685 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
* *
94337738 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTA
94337773 TGATATGTGA
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
52 1 0.01
53 79 0.99
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:94341236 original size:29 final size:28
Alignment explanation
Indices: 94341202--94341308 Score: 124
Period size: 29 Copynumber: 3.8 Consensus size: 28
94341192 CCGAGCATTT
94341202 TGTGTGCGAGATCGGTTGTTGAAGCACTG
1 TGTGTGCGAGATCGGTTGTTG-AGCACTG
*
94341231 TGTGTGCGAGATCGATTGTTGAGACACTG
1 TGTGTGCGAGATCGGTTGTTGAG-CACTG
* * ****
94341260 TGTGTGCGAGTTCTGTAACCGAGCACTG
1 TGTGTGCGAGATCGGTTGTTGAGCACTG
*
94341288 TGTGTGCAAGATCGGTTGTTG
1 TGTGTGCGAGATCGGTTGTTG
94341309 GGGCACTAAG
Statistics
Matches: 62, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
28 21 0.34
29 41 0.66
ACGTcount: A:0.18, C:0.15, G:0.36, T:0.32
Consensus pattern (28 bp):
TGTGTGCGAGATCGGTTGTTGAGCACTG
Found at i:94345164 original size:3 final size:3
Alignment explanation
Indices: 94345158--94345193 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
94345148 ACACTACTAT
94345158 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
94345194 TAGAAATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.