Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 297 of 320
Found at i:94614478 original size:94 final size:93
Alignment explanation
Indices: 94614313--94614673 Score: 392
Period size: 94 Copynumber: 3.9 Consensus size: 93
94614303 TGATTTGTGC
* *
94614313 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGAGAGCTAGTGTAAGATCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
* *
94614378 TGGGACATGGCATCGGCATCCAGACTAGG
66 TGGGACATGGCATCGGCAT-CAGAATAGT
* * *
94614407 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
* *
94614472 TAGGACATGGCATCAGCA-CAGAGATGAGT
66 TGGGACATGGCATCGGCATCAGA-AT-AGT
* * * * *** *
94614501 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTTGGCA-GAGATAGCCAGTGTAAGA-CGTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAG--AGCCAGTGTAAGATCATG
* * * *
94614564 TTTGGGACA-CGCATCGGC-T-AAAAGTTGT
64 TCTGGGACATGGCATCGGCATCAGAA-TAGT
* * *
94614592 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACGTATATATGAAAGCCAGTGTAAGATCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CATAT-TATGAGAGCCAGTGTAAGATCATG
94614657 TCTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
94614674 ACAATTTATC
Statistics
Matches: 221, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
91 33 0.15
92 22 0.10
93 23 0.10
94 131 0.59
95 12 0.05
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGATCATGTC
TGGGACATGGCATCGGCATCAGAATAGT
Found at i:94614566 original size:141 final size:137
Alignment explanation
Indices: 94614313--94614673 Score: 408
Period size: 141 Copynumber: 2.6 Consensus size: 137
94614303 TGATTTGTGC
*
94614313 GCTAGTGTAAGACATGTCTAGGACATGCATCAGC-CATATTATGAGAGCTAGTGTAAGATCATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACATA-TATGAGAGCCAGTGTAAGATCATGT
* * *
94614377 CTGGGACATGGCATCGGCATCCAGACTAGGGCTAGTGTAAGACATGTTTGGGACATGCATCAGCC
65 CTGGGACATGGCATCGGCATCCAGAATA-GGCCAGTGTAAGACATGTTTGGGACACGCATC-GCC
**
94614442 ATATTA-TGAGA
128 -TAAAAGT-AGA
* * * *
94614453 GCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGAGATGAGTGCCAGAGTAAGA-CATG
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCACATATATGAGAGCCAGTGTAAGATCATG
* * *
94614517 TCTGGGACAT-GCATCGGCCTTGGCAGAGATA-GCCAGTGTAAGACGTGTTTGGGACACGCATCG
64 TCTGGGACATGGCATCGG-CAT-CCAGA-ATAGGCCAGTGTAAGACATGTTTGGGACACGCATCG
* * *
94614580 GCTAAAAGTTGT
126 CCTAAAAGTAGA
* * *
94614592 GCTAGTGTAAGACATGTCTGGGACATGTATCAGCACGTATATATGAAAGCCAGTGTAAGATCATG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCAC--ATATATGAGAGCCAGTGTAAGATCATG
94614657 TCTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
94614674 ACAATTTATC
Statistics
Matches: 187, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
137 9 0.05
138 13 0.07
139 33 0.18
140 36 0.19
141 64 0.34
142 27 0.14
143 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (137 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCACATATATGAGAGCCAGTGTAAGATCATGTC
TGGGACATGGCATCGGCATCCAGAATAGGCCAGTGTAAGACATGTTTGGGACACGCATCGCCTAA
AAGTAGA
Found at i:94630451 original size:46 final size:45
Alignment explanation
Indices: 94630303--94630567 Score: 178
Period size: 46 Copynumber: 5.7 Consensus size: 45
94630293 TTTGTACGCT
* * * * *
94630303 AGTGTAAGACATGTCTGGGACATACATCAGC-CATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC-CA-GACGAGAGCC
* *
94630349 AGTGTAAGATCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCCAGACGAGAGCC
*
94630397 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGGCAGA-GATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC--CAGACGAGAGCC
* * * * * * *
94630443 AGTATAAGACGTGTCTGGGACACGCATCGGCT-AAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCCAGACG-AGAGCC
* * * * * * *
94630487 AGTGTAAGATATGTCTGGGAAATACATCAGCACACATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTC-C--AGACGAGAGCC
*
94630535 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
94630568 AATTTATCCC
Statistics
Matches: 169, Mismatches: 36, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
43 4 0.02
44 26 0.15
45 2 0.01
46 50 0.30
47 32 0.19
48 35 0.21
49 13 0.08
50 7 0.04
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCCAGACGAGAGCC
Found at i:94632659 original size:47 final size:46
Alignment explanation
Indices: 94632550--94632652 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 46
94632540 CCGGGATAAG
* * *
94632550 CACATAGTGCTTTATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTATAACAGTATAG-A
* *
94632597 CACAAAGTACTTCATCGGAACAAATCCGGAACTATAACAGTAGTCA-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTATAACAGTA-T-AGA
94632644 CACATAGTG
1 CACATAGTG
94632653 TCTCATCAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 45 0.96
48 1 0.02
49 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (46 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTATAACAGTATAGA
Found at i:94633430 original size:4 final size:4
Alignment explanation
Indices: 94633421--94633449 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
94633411 CCCTTTTCTA
94633421 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
94633450 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:94635803 original size:16 final size:17
Alignment explanation
Indices: 94635784--94635816 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94635774 CAATAGTCAT
94635784 CAAATTT-AAAAAAAAA
1 CAAATTTCAAAAAAAAA
94635800 CAAATTTCAAAAAAAAA
1 CAAATTTCAAAAAAAAA
94635817 ATCAAATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (17 bp):
CAAATTTCAAAAAAAAA
Found at i:94635975 original size:33 final size:34
Alignment explanation
Indices: 94635938--94636003 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
94635928 AAAGGCAGCC
94635938 AAAAAGAAAAAAAAAGTAAAAA-AAT-AAACAAAT
1 AAAAAGAAAAAAAAA-TAAAAACAATAAAACAAAT
* *
94635971 AAAAATAAAAAAGAATAAAAACAATAAAACAAA
1 AAAAAGAAAAAAAAATAAAAACAATAAAACAAA
94636004 GGTCATGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 6 0.21
33 16 0.55
34 7 0.24
ACGTcount: A:0.82, C:0.05, G:0.05, T:0.09
Consensus pattern (34 bp):
AAAAAGAAAAAAAAATAAAAACAATAAAACAAAT
Found at i:94635996 original size:9 final size:8
Alignment explanation
Indices: 94635946--94635999 Score: 56
Period size: 8 Copynumber: 6.5 Consensus size: 8
94635936 CCAAAAAGAA
94635946 AAAAAAAGT
1 AAAAAAA-T
94635955 AAAAAAAT
1 AAAAAAAT
*
94635963 AAACAAAT
1 AAAAAAAT
94635971 AAAAATAA-
1 AAAAA-AAT
*
94635979 AAAAGAAT
1 AAAAAAAT
94635987 AAAAACAAT
1 AAAAA-AAT
94635996 AAAA
1 AAAA
94636000 CAAAGGTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
7 2 0.05
8 20 0.53
9 16 0.42
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.11
Consensus pattern (8 bp):
AAAAAAAT
Found at i:94640665 original size:171 final size:171
Alignment explanation
Indices: 94640376--94641359 Score: 1209
Period size: 171 Copynumber: 5.7 Consensus size: 171
94640366 GTGAATTCAT
* ** *
94640376 AGATCTCATCTCCCTAAGATAGTAGTGGAGCAGATCGAAGACAATGAAACTTATCTT-CTAGAGG
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTA-AGG
* * * * *
94640440 TAGTAGAGGAGAAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGAAG
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
* * *
94640505 ATTGTAGTCTTATCTTCTTGAGGTAGTAAGGAAGTAAACTAA
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * *
94640547 AGATCTCATCTCCTTGAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTTCTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* *
94640612 GGCAGGGGAGCAAATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
*
94640677 TTGTAGTCTTGTCTTCCTGAGGTAGCAAGGAAGCAAACTAA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * ** *
94640718 AGATCTCATCTCCCTGAGATAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* * * * *
94640783 AGCAGGGGAGCAGATTTTAACCACTAGCCTTATCTCTCTAAAGTAGCAAGAGAACAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
** * *
94640848 TTGTAGTCTTATCTTCCTGAGGTATTAAGGAAGCTGACTGAAGATTGA
131 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAA---G-C--AA-ACTAA
* * *
94640896 AGATCTTATCTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
* * * **
94640960 AGTAGGGAAGCAGATTTTATCCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
*
94641025 TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGA
131 TTGTAGTCTTATCTTCCTGAGGTAGC----AAGGAAGCAAACT--A-A
* * * * *
94641073 TTGTAGACCTTATCTCCCTAA-ATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTG
1 ----AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTA
* *
94641137 AGGTAGCAGGGGAGCATATTTTAGCCACCAGCCTTACCTCTCTGAGGTAGCAAGAGAGCAGGTTG
62 AGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
*
94641202 AAGATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTAA
127 AAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
* * * * * ** * *
94641247 AGATCTCATCGCCCTAAGATAGCAATGGAGTAGATCAAAGACGGCGAATCTTGTCTTCCCAAGGT
1 AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
** * * *
94641312 AGCAGGGGAGCAGATTTTAGATAGCAGCCTTATCTCCCTGAAGTAGCA
66 AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCA
94641360 GTGGGGAAGA
Statistics
Matches: 707, Mismatches: 85, Indels: 42
0.85 0.10 0.05
Matches are distributed among these distances:
170 14 0.02
171 377 0.53
172 3 0.00
174 4 0.01
175 3 0.00
177 138 0.20
178 20 0.03
181 148 0.21
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27
Consensus pattern (171 bp):
AGATCTCATCTCCCTAAGATAGCAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGT
AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
TTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAAACTAA
Found at i:94641036 original size:44 final size:44
Alignment explanation
Indices: 94640640--94641234 Score: 194
Period size: 44 Copynumber: 13.5 Consensus size: 44
94640630 AGCCACCAGC
*
94640640 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* * *
94640684 CTTGTCTTCCTGAGGTAGCAAG-GAAGCAAACT-AA-A--G-A-T
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAGT
* * * * * * * * *
94640722 CTCATCTCCCTGAGATAGC-AGTGGAGCAGATCGAAAATGGCGAAT
1 CTTATCTTCCTGAGGTAGCAAG-AGAGCAGATTGAAGATTG-TAGT
* * * * * * * *
94640767 CTTATCTTCTTAAGGTAGCAGGGGAGCAGATTTTAACCA--CTAGC
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGA-TTGAA-GATTGTAGT
* * * *
94640811 CTTATC-TCTCTAAAGTAGCAAGAGAACAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
** * * *
94640855 CTTATCTTCCTGAGGTATTAAG-GAAGCTGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGATTGAAGATTGTAG-T
* * * * *
94640900 CTTATCTCCCTAAGCAGTAG--TG-GAGCAGATCGAAGA-TGATGAAT
1 CTTATCTTCCTGAG--GTAGCAAGAGAGCAGATTGAAGATTG-T-AGT
* * * * ** *
94640944 CTTATCTTCCTAAGGTAG-TAGGGAAGCAGATTTTATCCA-T-TAGC
1 CTTATCTTCCTGAGGTAGCAAGAG-AGCAGA-TTGA-AGATTGTAGT
*
94640988 CTTATC-TCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* *
94641032 CTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGTAGAC
1 CTTATCTTCCTGAGGTAGCAA-G-A-G-AGCAGATTGAAGATTGTAG-T
* ** * * * * *
94641081 CTTATCTCCCT-AAATAG-TAGTGGAGCAGATCGAAGATGGTGAAT
1 CTTATCTTCCTGAGGTAGCAAG-AGAGCAGATTGAAGATTGT-AGT
* * * ** ***** *
94641125 CTTATCTTCCTGAGGTAGCAGGGGAGCATATTTTAGCCACCAGC
1 CTTATCTTCCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
* *
94641169 CTTA-CCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
1 CTTATCTTC-CTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
*
94641213 CTTATCTTCCTAAGGTAGCAAG
1 CTTATCTTCCTGAGGTAGCAAG
94641235 GAAGCAAACT
Statistics
Matches: 394, Mismatches: 113, Indels: 88
0.66 0.19 0.15
Matches are distributed among these distances:
37 2 0.01
38 21 0.05
39 4 0.01
40 2 0.01
42 8 0.02
43 22 0.06
44 212 0.54
45 75 0.19
46 9 0.02
47 8 0.02
48 21 0.05
49 10 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGAGAGCAGATTGAAGATTGTAGT
Found at i:94641172 original size:181 final size:181
Alignment explanation
Indices: 94640725--94641238 Score: 757
Period size: 181 Copynumber: 2.9 Consensus size: 181
94640715 TAAAGATCTC
* * * * *
94640725 ATCTCCCTGAGATAGCAGTGGAGCAGATCGAAAATGGCGAATCTTATCTTCTTAAGGTAGCAGGG
1 ATCTCCCT-AAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGG
* * *
94640790 GAGCAGATTTTAACCACTAGCCTTATCTCTCTAAAGTAGCAAGAGAACAGGTTGAAGATTGTAGT
65 GAGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGT
** * *
94640855 CTTATCTTCCTGAGGT----ATTAAGGAAGCTGACTGAAGATTGAAGATCTT
130 CTTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
** * * *
94640903 ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGATGAATCTTATCTTCCTAAGGTAGTAGGGA
1 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
* *
94640968 AGCAGATTTTATCCATTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
66 AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
*
94641033 TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGTAGACCTT
131 TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
*
94641084 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTGAGGTAGCAGGGG
1 ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
* * * *
94641149 AGCATATTTTAGCCACCAGCCTTACCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
66 AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
*
94641214 TTATCTTCCTAAGGTAGCAAGGAAG
131 TTATCTTCCTGAGGTAGCAAGGAAG
94641239 CAAACTAAAG
Statistics
Matches: 300, Mismatches: 32, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
177 122 0.41
178 8 0.03
181 170 0.57
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (181 bp):
ATCTCCCTAAATAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAAGGTAGCAGGGG
AGCAGATTTTAACCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGTAGTC
TTATCTTCCTGAGGTAGCAAGGAAGGAAGCAGACTGAAGATTGAAGACCTT
Found at i:94641399 original size:45 final size:45
Alignment explanation
Indices: 94641340--94641455 Score: 160
Period size: 45 Copynumber: 2.6 Consensus size: 45
94641330 AGATAGCAGC
* * * *
94641340 CTTATCTCCCTGAAGTAGCAGTGGGGAAGATTAAGGACGGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
* *
94641385 CTTATCTCCTTGAAGTAGTAGTGGAGAAGACTGAGGACAGTGATT
1 CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
**
94641430 CTTATCTCCTTGAAGTTCCAGTGGAG
1 CTTATCTCCTTGAAGTAGCAGTGGAG
94641456 TAGATTGAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (45 bp):
CTTATCTCCTTGAAGTAGCAGTGGAGAAGACTAAGGACAGTGATT
Found at i:94643153 original size:15 final size:15
Alignment explanation
Indices: 94643133--94643191 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 15
94643123 CTTAAATACC
94643133 TATTATTTTTATATA
1 TATTATTTTTATATA
*
94643148 TATTATTTATATTAGACTA
1 TATTA-TT-T-TTATA-TA
94643167 CCTATTATTTTTATATA
1 --TATTATTTTTATATA
94643184 TATTATTT
1 TATTATTT
94643192 ATATTAGACT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 13 0.36
16 2 0.06
17 3 0.08
18 8 0.22
19 3 0.08
20 2 0.06
21 5 0.14
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTTTTATATA
Found at i:94643169 original size:36 final size:36
Alignment explanation
Indices: 94643129--94643229 Score: 150
Period size: 36 Copynumber: 2.8 Consensus size: 36
94643119 TATTCTTAAA
94643129 TACCTATTATTTTTATATATATTATTTATATTAGAC
1 TACCTATTATTTTTATATATATTATTTATATTAGAC
94643165 TACCTATTATTTTTATATATATTATTTATATTAGAC
1 TACCTATTATTTTTATATATATTATTTATATTAGAC
* * *
94643201 TATCT-TTTTTAATTTATGTATATTATTTA
1 TACCTATTATT--TTTATATATATTATTTA
94643230 CTTATATATA
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
35 4 0.07
36 40 0.67
37 16 0.27
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (36 bp):
TACCTATTATTTTTATATATATTATTTATATTAGAC
Found at i:94643172 original size:21 final size:19
Alignment explanation
Indices: 94643146--94643203 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
94643136 TATTTTTATA
94643146 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
*
94643165 TACCTATTA-TT-T-TTATA-
1 TA--TATTATTTATATTAGAC
94643182 TATATTATTTATATTAGAC
1 TATATTATTTATATTAGAC
94643201 TAT
1 TAT
94643204 CTTTTTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 12
0.69 0.04 0.27
Matches are distributed among these distances:
15 5 0.16
16 2 0.06
17 3 0.10
18 8 0.26
19 6 0.19
20 2 0.06
21 5 0.16
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.55
Consensus pattern (19 bp):
TATATTATTTATATTAGAC
Found at i:94647791 original size:35 final size:35
Alignment explanation
Indices: 94647745--94647815 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
94647735 AAAACTCACA
94647745 AAGCAATACATAGAGTCTCCCATTGAACACTTCGG
1 AAGCAATACATAGAGTCTCCCATTGAACACTTCGG
94647780 AAGCAATACATAGAGTCTCCCATTGAACACTTCGG
1 AAGCAATACATAGAGTCTCCCATTGAACACTTCGG
94647815 A
1 A
94647816 TCAATCCTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (35 bp):
AAGCAATACATAGAGTCTCCCATTGAACACTTCGG
Found at i:94648827 original size:30 final size:30
Alignment explanation
Indices: 94648793--94648849 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
94648783 TAACTCAAAA
94648793 TTTTGAAAAATTACAATTTTGCCCCTAAAC
1 TTTTGAAAAATTACAATTTTGCCCCTAAAC
* * * *
94648823 TTTTGCATATTTACACTTTTGCCCCTA
1 TTTTGAAAAATTACAATTTTGCCCCTA
94648850 GGCTCGGTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCTAAAC
Found at i:94658371 original size:12 final size:12
Alignment explanation
Indices: 94658341--94658372 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
94658331 TATATATTTT
94658341 AAAATT-ATATA
1 AAAATTAATATA
94658352 AAAA-TAATATA
1 AAAATTAATATA
94658363 AAAATTAATA
1 AAAATTAATA
94658373 CGAGCGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:94663777 original size:15 final size:15
Alignment explanation
Indices: 94663757--94663804 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
94663747 TTTATGGAAA
94663757 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
94663772 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
94663786 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
94663802 ATC
1 ATC
94663805 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:94663785 original size:30 final size:31
Alignment explanation
Indices: 94663751--94663814 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
94663741 TCCATATTTA
94663751 TGGAAAATCAAAGATATGGGTATC-AAATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
* *
94663781 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
94663812 TGG
1 TGG
94663815 CATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (31 bp):
TGGAAAATCAAAGATATGGGTATCGAAATAT
Found at i:94666466 original size:17 final size:17
Alignment explanation
Indices: 94666444--94666477 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
94666434 TTTGATGAAT
94666444 CAACCATGATGAAGAAC
1 CAACCATGATGAAGAAC
94666461 CAACCATGATGAAGAAC
1 CAACCATGATGAAGAAC
94666478 AATGATTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.12
Consensus pattern (17 bp):
CAACCATGATGAAGAAC
Found at i:94668424 original size:15 final size:15
Alignment explanation
Indices: 94668404--94668451 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
94668394 TTTATGGAAA
94668404 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
94668419 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
94668433 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
94668449 ATC
1 ATC
94668452 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:94668432 original size:30 final size:31
Alignment explanation
Indices: 94668398--94668461 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
94668388 TCCATATTTA
94668398 TGGAAAATCAAAGATATGGGTATC-AAATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
* *
94668428 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAATCAAAGATATGGGTATCGAAATAT
94668459 TGG
1 TGG
94668462 CATAATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (31 bp):
TGGAAAATCAAAGATATGGGTATCGAAATAT
Found at i:94672893 original size:21 final size:20
Alignment explanation
Indices: 94672869--94672959 Score: 94
Period size: 21 Copynumber: 4.3 Consensus size: 20
94672859 TCTGCTGCCA
*
94672869 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCT-TGCCTCCC
94672890 TCGCT-CATGCCTCTGCCTCCC
1 TCGCTGC-TGCCT-TGCCTCCC
* *
94672911 TCGCTGTTGCAGTTGCCTCCC
1 TCGCTGCTGC-CTTGCCTCCC
94672932 TCGCTGCTGCCGTTGCCTCCC
1 TCGCTGCTGCC-TTGCCTCCC
*
94672953 TCTCTGC
1 TCGCTGC
94672960 CACCTCCGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.02
21 58 0.97
22 1 0.02
ACGTcount: A:0.02, C:0.46, G:0.20, T:0.32
Consensus pattern (20 bp):
TCGCTGCTGCCTTGCCTCCC
Found at i:94674790 original size:10 final size:10
Alignment explanation
Indices: 94674775--94674809 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
94674765 TTTGTACATA
94674775 ATATGCCATG
1 ATATGCCATG
94674785 ATATGCACATG
1 ATATGC-CATG
94674796 ATATGCCATG
1 ATATGCCATG
94674806 ATAT
1 ATAT
94674810 ATACATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:94674794 original size:21 final size:21
Alignment explanation
Indices: 94674770--94674809 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
94674760 ACTGATTTGT
94674770 ACATAATATGCCATGATATGC
1 ACATAATATGCCATGATATGC
*
94674791 ACATGATATGCCATGATAT
1 ACATAATATGCCATGATAT
94674810 ATACATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (21 bp):
ACATAATATGCCATGATATGC
Found at i:94674815 original size:21 final size:20
Alignment explanation
Indices: 94674769--94674821 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
94674759 TACTGATTTG
*
94674769 TACATAATATGCCATGATATG
1 TACAT-ATATGCCATGATATA
*
94674790 CACATGATATGCCATGATATA
1 TACAT-ATATGCCATGATATA
94674811 TACATATATGC
1 TACATATATGC
94674822 ATGGGTTGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 6 0.21
21 22 0.79
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (20 bp):
TACATATATGCCATGATATA
Found at i:94675155 original size:31 final size:31
Alignment explanation
Indices: 94675119--94675194 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
94675109 CATTTACAGT
* *
94675119 AAAGGCTTTGGCCTAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
94675150 AAAGGCTTCGGCCCAGTGGTATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
94675181 AAAGGCTTCGGCCC
1 AAAGGCTTCGGCCC
94675195 CGTATATACT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:94678099 original size:40 final size:40
Alignment explanation
Indices: 94678039--94678222 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
94678029 TATTCGAATG
* * *
94678039 ATATCCGGGTTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
94678079 ATATCCGGACTAAGATCCGAAGACATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
94678119 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
94678159 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
94678199 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
94678223 CTTGTGTGAG
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:94679060 original size:20 final size:20
Alignment explanation
Indices: 94679037--94679076 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
94679027 AATTAATAAA
94679037 TTATTTAATCGAACCTTGAT
1 TTATTTAATCGAACCTTGAT
94679057 TTATTTAATCGAACCTTGAT
1 TTATTTAATCGAACCTTGAT
94679077 GAATCTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (20 bp):
TTATTTAATCGAACCTTGAT
Found at i:94679859 original size:13 final size:14
Alignment explanation
Indices: 94679829--94679862 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
94679819 ACTAATGATG
94679829 AATTA-AATTAAAC
1 AATTATAATTAAAC
94679842 AATTATAATTAAAC
1 AATTATAATTAAAC
94679856 -ATTATAA
1 AATTATAA
94679863 ATATTTAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
AATTATAATTAAAC
Found at i:94684915 original size:9 final size:9
Alignment explanation
Indices: 94684901--94685065 Score: 90
Period size: 9 Copynumber: 17.9 Consensus size: 9
94684891 AGGGATTATC
94684901 TTATGTAAA
1 TTATGTAAA
94684910 TTATGTAAGA
1 TTATGTAA-A
94684920 -TATGATATATA
1 TTATG-TA-A-A
94684931 TTTATGT--A
1 -TTATGTAAA
**
94684939 TTATGTAGG
1 TTATGTAAA
94684948 TTATGTAAA
1 TTATGTAAA
*
94684957 TTATGTAAG
1 TTATGTAAA
* **
94684966 TTATTTATC
1 TTATGTAAA
94684975 TTATGTAAA
1 TTATGTAAA
94684984 TTATGTAAGA
1 TTATGTAA-A
*
94684994 -TATGATACGTCA
1 TTATG-TA---AA
94685006 TTATGT--A
1 TTATGTAAA
*
94685013 TTATGTAAG
1 TTATGTAAA
94685022 TTATGTAAA
1 TTATGTAAA
*
94685031 TTATGTAAG
1 TTATGTAAA
* **
94685040 TTATTTATC
1 TTATGTAAA
94685049 TTATGTAAA
1 TTATGTAAA
94685058 TTATGTAA
1 TTATGTAA
94685066 GATATGATAT
Statistics
Matches: 120, Mismatches: 21, Indels: 30
0.70 0.12 0.18
Matches are distributed among these distances:
7 13 0.11
8 1 0.01
9 87 0.73
10 6 0.05
11 2 0.02
12 3 0.03
13 8 0.07
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TTATGTAAA
Found at i:94684961 original size:18 final size:18
Alignment explanation
Indices: 94684938--94685065 Score: 100
Period size: 18 Copynumber: 7.0 Consensus size: 18
94684928 ATATTTATGT
*
94684938 ATTATGTAGGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
94684956 ATTATGTAAGTTATTTAT
1 ATTATGTAAGTTATGTAA
* *
94684974 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
*
94684992 GA-TATGATACGTCATTATGT--
1 -ATTATG-TAAG---TTATGTAA
94685012 ATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGTAA
* *
94685030 ATTATGTAAGTTATTTAT
1 ATTATGTAAGTTATGTAA
* *
94685048 CTTATGTAAATTATGTAA
1 ATTATGTAAGTTATGTAA
94685066 GATATGATAT
Statistics
Matches: 85, Mismatches: 17, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
16 6 0.07
18 63 0.74
19 6 0.07
20 4 0.05
22 6 0.07
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (18 bp):
ATTATGTAAGTTATGTAA
Found at i:94685017 original size:74 final size:74
Alignment explanation
Indices: 94684896--94685086 Score: 330
Period size: 74 Copynumber: 2.6 Consensus size: 74
94684886 ATAAAAGGGA
* *
94684896 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAGGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
94684961 GTAAGTTAT
66 GTAAGTTAT
*
94684970 TTATCTTATGTAAATTATGTAAGATATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATACAT-ATTTATGTATTATGTAAGTTATGTAAATTA
94685034 TGTAAGTTAT
65 TGTAAGTTAT
*
94685044 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTA
1 TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTA
94685087 CTGTGATTGT
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
73 1 0.01
74 108 0.98
75 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.48
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGATATGATACATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGTTAT
Found at i:94685353 original size:105 final size:105
Alignment explanation
Indices: 94685209--94685633 Score: 716
Period size: 104 Copynumber: 4.1 Consensus size: 105
94685199 AATAATGAAT
*
94685209 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
* *
94685274 TAAATTAAAACATTTAAAATAAAATTTTAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
94685314 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
94685379 TAAAATAAAATATTTAAAATAAAA-TTTAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
94685418 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
94685483 TAAAATAAAATATTTAAAAT-AAATTTTAAATACAATTTA
66 TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
* * * *
94685522 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
* * *
94685587 T-AAAT--AATATCTTCAAATAAAACTTTAATTACAATTTA
66 TAAAATAAAATAT-TTAAAATAAAATTTTAAATACAATTTA
94685625 ATTTAATTA
1 ATTTAATTA
94685634 ATAAGGTTAA
Statistics
Matches: 307, Mismatches: 10, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
101 5 0.02
102 6 0.02
103 33 0.11
104 177 0.58
105 86 0.28
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (105 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
TAAAATAAAATATTTAAAATAAAATTTTAAATACAATTTA
Found at i:94685588 original size:208 final size:208
Alignment explanation
Indices: 94685209--94685633 Score: 721
Period size: 209 Copynumber: 2.0 Consensus size: 208
94685199 AATAATGAAT
94685209 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAA
*
94685274 TAAATTAAAACATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAA
66 TAAAATAAAACATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAA
*
94685339 AATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAATAAAATAAAATAT-TTAAAATAAAA
131 AATAAAAGTAGACAAAATATTTATCCTGATTAAAATAAAAT-AAAT--AATATCTTAAAATAAAA
94685403 -TTTAAATACAATTTA
193 CTTTAAATACAATTTA
*
94685418 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAA
* *
94685483 TAAAATAAAATATTTAAAAT-AAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAATTAA
66 TAAAATAAAACATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAA
* * *
94685547 AATAAAAGTAGACAAAATATTTATCGTGATTAAATTAAAATAAATAATATCTTCAAATAAAACTT
131 AATAAAAGTAGACAAAATATTTATCCTGATTAAAATAAAATAAATAATATCTTAAAATAAAACTT
*
94685612 TAATTACAATTTA
196 TAAATACAATTTA
94685625 ATTTAATTA
1 ATTTAATTA
94685634 ATAAGGTTAA
Statistics
Matches: 205, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
205 5 0.02
206 10 0.05
207 27 0.13
208 81 0.40
209 82 0.40
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (208 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCATGATTAAAATAAAA
TAAAATAAAACATTTAAAATAAAATTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAA
AATAAAAGTAGACAAAATATTTATCCTGATTAAAATAAAATAAATAATATCTTAAAATAAAACTT
TAAATACAATTTA
Found at i:94690221 original size:16 final size:16
Alignment explanation
Indices: 94690200--94690253 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
94690190 AGAATTAGAT
94690200 AAAATTTGAAATCTTG
1 AAAATTTGAAATCTTG
94690216 AAAA-TT---A--TTG
1 AAAATTTGAAATCTTG
*
94690226 AAAATTTGAAATCTTT
1 AAAATTTGAAATCTTG
94690242 AAAATTTGAAAT
1 AAAATTTGAAAT
94690254 TATTTAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 2 0.06
12 1 0.03
14 1 0.03
15 2 0.06
16 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (16 bp):
AAAATTTGAAATCTTG
Found at i:94690498 original size:7 final size:7
Alignment explanation
Indices: 94690486--94690615 Score: 77
Period size: 7 Copynumber: 18.1 Consensus size: 7
94690476 CCTAACATGT
94690486 ACCCTTA
1 ACCCTTA
*
94690493 ACCCTTGG
1 ACCCTT-A
94690501 ACCCTTA
1 ACCCTTA
*
94690508 ACTCCTAA
1 AC-CCTTA
94690516 ACCCTTA
1 ACCCTTA
*
94690523 ACCTTTA
1 ACCCTTA
*
94690530 ACCCCTA
1 ACCCTTA
* *
94690537 AGCTTTAA
1 ACCCTT-A
94690545 ACCC-TA
1 ACCCTTA
*
94690551 A-CATGT-
1 ACCCT-TA
94690557 ACCCTTA
1 ACCCTTA
*
94690564 ACCCTTGG
1 ACCCTT-A
94690572 ACCCTTA
1 ACCCTTA
*
94690579 ACTCCTAA
1 AC-CCTTA
94690587 ACCCTTA
1 ACCCTTA
*
94690594 ACCTTTA
1 ACCCTTA
**
94690601 ACTTTTA
1 ACCCTTA
94690608 ACCCTTA
1 ACCCTTA
94690615 A
1 A
94690616 ATCATAAACC
Statistics
Matches: 92, Mismatches: 22, Indels: 18
0.70 0.17 0.14
Matches are distributed among these distances:
5 1 0.01
6 4 0.04
7 60 0.65
8 27 0.29
ACGTcount: A:0.29, C:0.36, G:0.05, T:0.30
Consensus pattern (7 bp):
ACCCTTA
Found at i:94690519 original size:15 final size:15
Alignment explanation
Indices: 94690501--94690595 Score: 51
Period size: 15 Copynumber: 6.6 Consensus size: 15
94690491 TAACCCTTGG
94690501 ACCCTTAACTCCTAA
1 ACCCTTAACTCCTAA
* *
94690516 ACCCTTAAC-CTTTA
1 ACCCTTAACTCCTAA
* *
94690530 ACCCCTAAGCT-TTAA
1 ACCCTTAA-CTCCTAA
*
94690545 ACCC-TAACAT-GT--
1 ACCCTTAAC-TCCTAA
**
94690557 ACCCTTAAC-CCTTGG
1 ACCCTTAACTCC-TAA
94690572 ACCCTTAACTCCTAA
1 ACCCTTAACTCCTAA
94690587 ACCCTTAAC
1 ACCCTTAAC
94690596 CTTTAACTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
12 4 0.06
13 6 0.10
14 15 0.24
15 36 0.57
16 2 0.03
ACGTcount: A:0.31, C:0.38, G:0.04, T:0.27
Consensus pattern (15 bp):
ACCCTTAACTCCTAA
Found at i:94690527 original size:71 final size:71
Alignment explanation
Indices: 94690445--94690602 Score: 307
Period size: 71 Copynumber: 2.2 Consensus size: 71
94690435 CAACTCATAG
94690445 CCCTTAGACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAAC
1 CCCTTA-ACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAAC
94690510 TCCTAAA
65 TCCTAAA
94690517 CCCTTAACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACT
1 CCCTTAACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACT
94690582 CCTAAA
66 CCTAAA
94690588 CCCTTAACCTTTAAC
1 CCCTTAACCTTTAAC
94690603 TTTTAACCCT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 80 0.93
72 6 0.07
ACGTcount: A:0.29, C:0.37, G:0.06, T:0.28
Consensus pattern (71 bp):
CCCTTAACCTTTAACCCCTAAGCTTTAAACCCTAACATGTACCCTTAACCCTTGGACCCTTAACT
CCTAAA
Found at i:94690542 original size:14 final size:14
Alignment explanation
Indices: 94690452--94690552 Score: 60
Period size: 14 Copynumber: 7.1 Consensus size: 14
94690442 TAGCCCTTAG
94690452 ACCTTTAACCCCTA
1 ACCTTTAACCCCTA
* *
94690466 AGCTTTAAACCCTA
1 ACCTTTAACCCCTA
* * *
94690480 ACATGT-ACCCTTA
1 ACCTTTAACCCCTA
** *
94690493 ACCCTTGGACCCTTA
1 A-CCTTTAACCCCTA
* * *
94690508 ACTCCTAAACCCTTA
1 AC-CTTTAACCCCTA
94690523 ACCTTTAACCCCTA
1 ACCTTTAACCCCTA
* *
94690537 AGCTTTAAACCCTA
1 ACCTTTAACCCCTA
94690551 AC
1 AC
94690553 ATGTACCCTT
Statistics
Matches: 65, Mismatches: 19, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
13 6 0.09
14 40 0.62
15 19 0.29
ACGTcount: A:0.31, C:0.37, G:0.05, T:0.28
Consensus pattern (14 bp):
ACCTTTAACCCCTA
Found at i:94690681 original size:15 final size:14
Alignment explanation
Indices: 94690661--94690694 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
94690651 AACCATAAAT
*
94690661 CATAATCCCTAAGTC
1 CATAATCCATAA-TC
94690676 CATAATCCATAATC
1 CATAATCCATAATC
94690690 CATAA
1 CATAA
94690695 ACCTTGAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (14 bp):
CATAATCCATAATC
Found at i:94690684 original size:7 final size:7
Alignment explanation
Indices: 94690661--94690694 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
94690651 AACCATAAAT
94690661 CATAATC
1 CATAATC
*
94690668 CCTAAGTC
1 CATAA-TC
94690676 CATAATC
1 CATAATC
94690683 CATAATC
1 CATAATC
94690690 CATAA
1 CATAA
94690695 ACCTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (7 bp):
CATAATC
Found at i:94690734 original size:15 final size:14
Alignment explanation
Indices: 94690714--94690753 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
94690704 TATTAACTCA
94690714 TAAACCATAAACCCC
1 TAAACCATAAA-CCC
*
94690729 TAAACCTTAAACCC
1 TAAACCATAAACCC
94690743 TAAACCCATAA
1 TAAA-CCATAA
94690754 TTCATAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:94690761 original size:22 final size:22
Alignment explanation
Indices: 94690711--94690768 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
94690701 AGATATTAAC
*
94690711 TCATAAACCATAAACCCCTAAA
1 TCATAAACCATAAACCCATAAA
* * * *
94690733 CCTTAAACCCTAAACCCATAAT
1 TCATAAACCATAAACCCATAAA
*
94690755 TCATAAACCTTAAA
1 TCATAAACCATAAA
94690769 ATATTAACTC
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (22 bp):
TCATAAACCATAAACCCATAAA
Found at i:94690828 original size:14 final size:14
Alignment explanation
Indices: 94690712--94690829 Score: 56
Period size: 14 Copynumber: 8.0 Consensus size: 14
94690702 GATATTAACT
*
94690712 CATAAACCATAAACC
1 CATAAACCTTAAA-C
*
94690727 CCTAAACCTTAAAC
1 CATAAACCTTAAAC
* * **
94690741 CCTAAACCCATAATT
1 CATAAA-CCTTAAAC
*
94690756 CATAAACCTTAAAA
1 CATAAACCTTAAAC
* *
94690770 TATTAACTCATCATAAAC
1 CATAAAC-C-T--TAAAC
*
94690788 CATAAACCCTAAAC
1 CATAAACCTTAAAC
* ** *
94690802 TATATTCCCTAAAC
1 CATAAACCTTAAAC
94690816 CATAAACCTTAAAC
1 CATAAACCTTAAAC
94690830 TAAAATGATA
Statistics
Matches: 76, Mismatches: 22, Indels: 11
0.70 0.20 0.10
Matches are distributed among these distances:
14 43 0.57
15 22 0.29
16 1 0.01
17 1 0.01
18 9 0.12
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:94691292 original size:82 final size:79
Alignment explanation
Indices: 94691121--94691295 Score: 224
Period size: 82 Copynumber: 2.2 Consensus size: 79
94691111 GCTTTTTGAA
* *
94691121 AAAACGCCGCTATAAATAGAGCAATAGCGACGTTTTTCAAAAAGCGCCGCTATATATCTGAGCAT
1 AAAACGCCGCTATAAATAGAGCAATAGCGACGTTTTTCAAAAAGCGCCGCTATAGATCTAAGCAT
*
94691186 TAGCGGCGTTTTTC
66 TAGCGGCGTTTTGC
* * * * * *
94691200 ATAAAGCGCCGCTATAGATTTGAGCATTAGTGACGTTTTTCATAAAGTGCCGCTATAGATCTAAG
1 A-AAA-CGCCGCTATA-AATAGAGCAATAGCGACGTTTTTCAAAAAGCGCCGCTATAGATCTAAG
94691265 CATTAGCGGCGCTTTTGGC
63 CATTAGCGGCG-TTTT-GC
94691284 AAAACGCCGCTA
1 AAAACGCCGCTA
94691296 ATAACACTAA
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 1 0.01
80 3 0.04
81 10 0.12
82 59 0.72
83 7 0.09
84 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (79 bp):
AAAACGCCGCTATAAATAGAGCAATAGCGACGTTTTTCAAAAAGCGCCGCTATAGATCTAAGCAT
TAGCGGCGTTTTGC
Found at i:94691295 original size:41 final size:41
Alignment explanation
Indices: 94691125--94691280 Score: 197
Period size: 41 Copynumber: 3.8 Consensus size: 41
94691115 TTTGAAAAAA
* * * * *
94691125 CGCCGCTATAAAT-AGAGCAATAGCGACGTTTTTCAAAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
*
94691165 CGCCGCTATATATCTGAGCATTAGCGGCGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
* * *
94691206 CGCCGCTATAGATTTGAGCATTAGTGACGTTTTTCATAAAG
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
* * *
94691247 TGCCGCTATAGATCTAAGCATTAGCGGCGCTTTT
1 CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTT
94691281 GGCAAAACGC
Statistics
Matches: 100, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 12 0.12
41 88 0.88
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (41 bp):
CGCCGCTATAGATCTGAGCATTAGCGGCGTTTTTCATAAAG
Found at i:94691404 original size:39 final size:38
Alignment explanation
Indices: 94691345--94691449 Score: 138
Period size: 39 Copynumber: 2.6 Consensus size: 38
94691335 TTACTTTTGT
94691345 GGCGTTTTTTTGCAAACGCCGCTAATGCCCGATCTGTAGC
1 GGCGTTTTTTT--AAACGCCGCTAATGCCCGATCTGTAGC
* *
94691385 GGCGTTTTTTTAAAGCGCCGCTAATGCTCGATCTTTAGC
1 GGCGTTTTTTTAAA-CGCCGCTAATGCCCGATCTGTAGC
94691424 GGCGTTTTTACTTTAAACGCCGCTAA
1 GGCG-TTTT--TTTAAACGCCGCTAA
94691450 AAATGCCGCG
Statistics
Matches: 59, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
38 3 0.05
39 26 0.44
40 15 0.25
41 9 0.15
42 6 0.10
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (38 bp):
GGCGTTTTTTTAAACGCCGCTAATGCCCGATCTGTAGC
Found at i:94692835 original size:19 final size:19
Alignment explanation
Indices: 94692813--94692869 Score: 53
Period size: 19 Copynumber: 2.8 Consensus size: 19
94692803 AAGAAATATT
94692813 AAAATAATTTTTAAAATTC
1 AAAATAATTTTTAAAATTC
* *
94692832 AAAAT-ATTTATAAAAATTT
1 AAAATAATTT-TTAAAATTC
94692851 AAAATTTATATTTTTAAAA
1 AAAA--TA-ATTTTTAAAA
94692870 AATTATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 4 0.13
19 16 0.53
21 1 0.03
22 5 0.17
23 4 0.13
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATAATTTTTAAAATTC
Found at i:94692859 original size:17 final size:17
Alignment explanation
Indices: 94692837--94692887 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
94692827 AATTCAAAAT
94692837 ATTTATAAAAATTTAAA
1 ATTTATAAAAATTTAAA
**
94692854 ATTTAT--ATTTTTAAAA
1 ATTTATAAAAATTT-AAA
*
94692870 AATTATAAAAATTTAAA
1 ATTTATAAAAATTTAAA
94692887 A
1 A
94692888 AAAATTCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 6
0.70 0.14 0.16
Matches are distributed among these distances:
15 4 0.15
16 8 0.31
17 10 0.38
18 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATTTATAAAAATTTAAA
Found at i:94692868 original size:23 final size:26
Alignment explanation
Indices: 94692835--94692884 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
94692825 AAAATTCAAA
94692835 ATATTTAT-AAAAATT-T-AAAATTT
1 ATATTTATAAAAAATTATAAAAATTT
*
94692858 ATATTTTTAAAAAATTATAAAAATTT
1 ATATTTATAAAAAATTATAAAAATTT
94692884 A
1 A
94692885 AAAAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 7 0.30
24 7 0.30
25 1 0.04
26 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATATTTATAAAAAATTATAAAAATTT
Found at i:94692995 original size:17 final size:17
Alignment explanation
Indices: 94692973--94693011 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
94692963 CATATTAAAG
*
94692973 TATTTTATTTTTAAAAT
1 TATTTTATTTTGAAAAT
*
94692990 TATTTTGTTTTGAAAAT
1 TATTTTATTTTGAAAAT
94693007 T-TTTT
1 TATTTT
94693012 CAAATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (17 bp):
TATTTTATTTTGAAAAT
Found at i:94695014 original size:46 final size:45
Alignment explanation
Indices: 94694961--94695136 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
94694951 TATTTGGGCA
94694961 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * * *
94695007 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTGGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
**
94695054 TCCGGGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
94695100 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94695137 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 4 0.04
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94695114 original size:93 final size:93
Alignment explanation
Indices: 94694955--94695128 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
94694945 CTAGGATATT
* *
94694955 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
*
94695020 AGTTGAGTTCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
** *
94695048 TGGGCATCCGGGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTG
1 TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
94695113 AGTTGAGTCCGAGTTC
66 AGTTGAGTCCGAGTTC
94695129 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.21, G:0.32, T:0.28
Consensus pattern (93 bp):
TGGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:94698091 original size:15 final size:15
Alignment explanation
Indices: 94698071--94698139 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
94698061 GTATCTTGGG
94698071 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* * *
94698086 TCTCTTTATTCTAGA
1 TTTCTTTATCCTGGA
* *
94698101 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
94698116 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
94698131 TTTCTTTAT
1 TTTCTTTAT
94698140 TCGGTTTTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.13, C:0.17, G:0.12, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:94698133 original size:30 final size:30
Alignment explanation
Indices: 94698062--94698149 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
94698052 CATAGTATCG
* * * *
94698062 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
94698092 TAT-TCTAGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
94698122 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
94698150 TGTTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:94698150 original size:14 final size:14
Alignment explanation
Indices: 94698071--94698150 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
94698061 GTATCTTGGG
*
94698071 TTTCTTTATCCTGGA
1 TTTCTTTATTC-GGA
* *
94698086 TCTCTTTATTCTAGA
1 TTTCTTTATTC-GGA
*
94698101 TTTCTTTATTCTGGG
1 TTTCTTTATTC-GGA
* *
94698116 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
94698131 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
94698145 TTTCTT
1 TTTCTT
94698151 GTTATCTTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
14 9 0.17
15 42 0.81
16 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.12, T:0.59
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:94700588 original size:46 final size:45
Alignment explanation
Indices: 94700535--94700710 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
94700525 TATTTGGGCA
94700535 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
94700581 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
** * *
94700628 TCCGGGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
94700674 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94700711 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.63
47 28 0.27
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:94700690 original size:93 final size:93
Alignment explanation
Indices: 94700531--94700702 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
94700521 AGGATATTTG
* * *
94700531 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
94700596 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
** * *
94700624 GGCATCCGGGCTCGTTGAATTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
94700689 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
94700703 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:94703469 original size:18 final size:17
Alignment explanation
Indices: 94703428--94703462 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
94703418 CAAATATTAC
94703428 TATTTATGTATTTTTTA
1 TATTTATGTATTTTTTA
94703445 TATTTAT-TATTTTTTA
1 TATTTATGTATTTTTTA
94703461 TA
1 TA
94703463 GATTTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TATTTATGTATTTTTTA
Found at i:94705255 original size:20 final size:19
Alignment explanation
Indices: 94705219--94705257 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
94705209 AATCGAGTTA
**
94705219 AATAAAGAAATTTAAAAAT
1 AATAAAGAAATAAAAAAAT
94705238 AATAATAGAAATAAAAAAAT
1 AATAA-AGAAATAAAAAAAT
94705258 TGAAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AATAAAGAAATAAAAAAAT
Found at i:94705402 original size:52 final size:53
Alignment explanation
Indices: 94705344--94705467 Score: 137
Period size: 53 Copynumber: 2.4 Consensus size: 53
94705334 TAAGTGATTA
94705344 AAATAATATGGCGGCACCAAAAAATAA-TTTTTTA-TTTAATTTAT-ATACCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTT-ATTT-TGATACCTCC
* ** * * * *
94705396 AAATAATGTGTTGTCACCAAAAGATAATTTTTTTAGTTTATTTTGGTGCCTCC
1 AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTTATTTTGATACCTCC
*
94705449 AAATAACATGGCGGCACCA
1 AAATAATATGGCGGCACCA
94705468 CAAATATTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
52 23 0.40
53 31 0.54
54 3 0.05
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (53 bp):
AAATAATATGGCGGCACCAAAAAATAATTTTTTTAGTTTATTTTGATACCTCC
Found at i:94712572 original size:14 final size:14
Alignment explanation
Indices: 94712540--94712592 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
94712530 TCACCAAACT
* *
94712540 GAAAATGACTTCCG
1 GAAAATGATTTCTG
* *
94712554 AAAAATAATTTCTG
1 GAAAATGATTTCTG
94712568 GAAAATGATTTCTG
1 GAAAATGATTTCTG
94712582 GAAAATGATTT
1 GAAAATGATTT
94712593 ACTTTTCTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:94721094 original size:28 final size:28
Alignment explanation
Indices: 94721054--94721109 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
94721044 TTACAAAGAG
94721054 AAAATTAGAATTGAAAGAAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
94721082 AAAATTAGAATTGAAAGAAATAAGCCTT
1 AAAATTAGAATTGAAAGAAATAAGCCTT
94721110 TCATTACATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (28 bp):
AAAATTAGAATTGAAAGAAATAAGCCTT
Found at i:94721661 original size:12 final size:12
Alignment explanation
Indices: 94721646--94721671 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94721636 AGTATTTGTG
94721646 GAAGGAGATCCA
1 GAAGGAGATCCA
94721658 GAAGGAGATCCA
1 GAAGGAGATCCA
94721670 GA
1 GA
94721672 GATGGCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAGGAGATCCA
Found at i:94726452 original size:29 final size:30
Alignment explanation
Indices: 94726395--94726452 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
94726385 CGGAAGTTTT
* *
94726395 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCAATTTAAACCAGCTTG
94726425 GGCACTAAGTGTGCAATTT-AACCAGCTT
1 GGCACTAAGTGTGCAATTTAAACCAGCTT
94726453 CGGCTATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (30 bp):
GGCACTAAGTGTGCAATTTAAACCAGCTTG
Found at i:94735944 original size:15 final size:15
Alignment explanation
Indices: 94735905--94735945 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
94735895 CAAGGAAACC
94735905 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
94735920 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
94735935 GAATAAAGAAA
1 GAATAAAGAAA
94735946 CCCAAGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 1 0.05
15 20 0.91
16 1 0.05
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:94739024 original size:93 final size:93
Alignment explanation
Indices: 94738916--94739086 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
94738906 GCCCCTAAGT
* * * *
94738916 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
94738981 CAAGTTCGGATGCCTAGTTACATTTCAC
66 CAAGTTCGGATGCCTAGTTACATTTCAC
*
94739009 GAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
94739074 CGAGTTGGGATGC
66 CAAGTTCGGATGC
94739087 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATCCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATTTCAC
Found at i:94739102 original size:46 final size:46
Alignment explanation
Indices: 94738911--94739079 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
94738901 AACTCGCCCC
* * * * *
94738911 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
* * *
94738957 TAAGTGAACTCGGACTCAACTCAACAAGTTCGG--ATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-CC--GCATCCA
* *
94739003 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
94739050 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
94739080 GGGATGCTCA
Statistics
Matches: 100, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 59 0.59
47 31 0.31
48 4 0.04
49 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCA
Found at i:94743713 original size:47 final size:47
Alignment explanation
Indices: 94743662--94743952 Score: 377
Period size: 47 Copynumber: 6.1 Consensus size: 47
94743652 TTAGGATTTT
* *
94743662 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
94743709 ATGTGATGAATGTGAACCTGTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCG------TATGTGTGATAAGGCCGAATGGCCA
*
94743762 ATGTGATGATTGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
94743809 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * * *
94743856 ATGTGATAAATGTGAACATACATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
94743903 ATGTGATGAATGTGAACATG-GATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCG-TATGTGTGATAAGGCCGAATGGCCA
94743950 ATG
1 ATG
94743953 CGAAACGTGT
Statistics
Matches: 214, Mismatches: 23, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
47 172 0.80
53 42 0.20
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:94744015 original size:46 final size:46
Alignment explanation
Indices: 94743926--94744016 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
94743916 GAACATGGAT
* * * *
94743926 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
94743972 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
94744017 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:94744023 original size:141 final size:140
Alignment explanation
Indices: 94743673--94744008 Score: 342
Period size: 141 Copynumber: 2.4 Consensus size: 140
94743663 TGTGATGGAT
* * * * * *
94743673 GTGAACATGCGTATGTGTGATAAGGTCGAATGGCCAATGTGATG-AATGTGAACCTGTGTATATA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCAAATGTGA-GAAATGTGAA-C---ATACATA
* * *
94743737 TATGCGTGATAAGGCCGAATGGCCAATGTGATGATTGTGAACATGCGTATGTGTGATAAGGCCGA
61 TAT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGA
* *
94743802 ATGGCCAATGTGATGAAT
124 ATGGCCAATGCGA-GAAC
* * *
94743820 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCAAATGTGATAAATGTGAACATACATATATGA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCAAATGTGAGAAATGTGAACATACATATATGA
* *
94743885 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-GATATATGTGGTAAGGCCGAATGGCT
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCG-TATATGTGATAAGGCCGAATGGCC
94743949 AATGCGA-AAC
130 AATGCGAGAAC
* * *
94743959 GTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGAGATATGT
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCAAATGTGAGAAATGT
94744009 ACGAGATGTG
Statistics
Matches: 165, Mismatches: 18, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
139 5 0.03
140 26 0.16
141 67 0.41
142 10 0.06
143 8 0.05
146 1 0.01
147 48 0.29
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.26
Consensus pattern (140 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCAAATGTGAGAAATGTGAACATACATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:94744223 original size:37 final size:37
Alignment explanation
Indices: 94744169--94744314 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
94744159 GGAAATATAT
*
94744169 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94744206 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94744243 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
94744280 TCCGGGTAAGACCCGATAAGTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
94744315 CGTCTGAGCT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:94745973 original size:40 final size:40
Alignment explanation
Indices: 94745570--94745961 Score: 615
Period size: 40 Copynumber: 9.8 Consensus size: 40
94745560 GAGAATTGAG
*
94745570 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* **
94745610 AGTGATGTATTTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94745650 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
94745690 AGTGGTATATCCAGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94745730 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
94745770 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
94745810 AGTGATATATCTGGGCTAAGTCCCAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
94745850 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
94745890 AGTGATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
94745930 GGTGTTATATCCGGGCTAGGTCCCGAGGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
94745962 ATCATGCTGG
Statistics
Matches: 322, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.00
40 319 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:94747872 original size:85 final size:85
Alignment explanation
Indices: 94747729--94747907 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
94747719 GGCCGGCCAT
94747729 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
94747794 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
94747814 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
94747879 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
94747899 GGGCATGGG
1 GAGCATGGG
94747908 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:94749897 original size:47 final size:47
Alignment explanation
Indices: 94749846--94750091 Score: 296
Period size: 47 Copynumber: 5.1 Consensus size: 47
94749836 TTAGGATTTT
*
94749846 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
94749893 ATGTGATGAATGTGAACCTGTATATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-------ATGCGTATGTGTGATAAGGCCGAATGGCCA
94749948 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
94749995 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * * *
94750042 ATGTGATGAATGTGAACATG-GATATATGTGGTAAGGCCAAATGGCTA
1 ATGTGATGAATGTGAACATGCG-TATGTGTGATAAGGCCGAATGGCCA
94750089 ATG
1 ATG
94750092 CGAAACGTGT
Statistics
Matches: 173, Mismatches: 17, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
47 129 0.75
48 1 0.01
54 1 0.01
55 42 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:94749966 original size:102 final size:94
Alignment explanation
Indices: 94749846--94750091 Score: 332
Period size: 94 Copynumber: 2.5 Consensus size: 94
94749836 TTAGGATTTT
*
94749846 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
* *
94749911 TGTATATATATATATGCGTGATAAGGCCGAATGGCCA
65 -----ATACATATAT--GAGATAAGGCCGAATGGCCA
94749948 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
*
94750013 TGCATATATGAGATAAGGCCGAATGGCCA
66 TACATATATGAGATAAGGCCGAATGGCCA
* * * *
94750042 ATGTGATGAATGTGAACATG-GATATATGTGGTAAGGCCAAATGGCTAATG
1 ATGTGATGAATGTGAACATGCG-TATGTGTGATAAGGCCGAATGGCCAATG
94750092 CGAAACGTGT
Statistics
Matches: 135, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
93 1 0.01
94 63 0.47
96 8 0.06
101 1 0.01
102 62 0.46
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TACATATATGAGATAAGGCCGAATGGCCA
Found at i:94750154 original size:46 final size:46
Alignment explanation
Indices: 94750065--94750155 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
94750055 GAACATGGAT
* * *
94750065 ATATGTGGTAAGGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
94750111 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
94750156 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:94750352 original size:37 final size:37
Alignment explanation
Indices: 94750302--94750521 Score: 395
Period size: 37 Copynumber: 5.9 Consensus size: 37
94750292 GGAAATATAT
94750302 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94750339 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94750376 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
94750413 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
94750450 TTCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
94750487 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
94750522 CGTCTGAGCT
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 178 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:94751933 original size:29 final size:30
Alignment explanation
Indices: 94751880--94751937 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
94751870 CGGAAGTTTT
94751880 GGCACTAAGTGTGCGATTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTTAAACTAGCTTG
*
94751910 GGCACTAAGTTTGCGATTT-AACTAGCTT
1 GGCACTAAGTGTGCGATTTAAACTAGCTT
94751938 CGGCTATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (30 bp):
GGCACTAAGTGTGCGATTTAAACTAGCTTG
Found at i:94755126 original size:17 final size:18
Alignment explanation
Indices: 94755104--94755139 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
94755094 GATATGATAC
*
94755104 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
94755121 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
94755139 T
1 T
94755140 CGGGAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:94755427 original size:22 final size:21
Alignment explanation
Indices: 94755392--94755486 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 21
94755382 AAAAGGTATC
* *
94755392 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
94755413 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
94755436 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
94755455 TAC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
94755473 TGCATATCATATCT
1 TACAAATCATATCT
94755487 AAGATTGCAT
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
18 16 0.26
19 16 0.26
21 4 0.07
22 15 0.25
23 10 0.16
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:94755435 original size:23 final size:22
Alignment explanation
Indices: 94755392--94755467 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 22
94755382 AAAAGGTATC
* *
94755392 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
94755413 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
94755436 TGCATATCATA---TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
94755455 TAC-AATCATATCT
1 TACAAATCATATCT
94755468 AAGATTGCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
18 6 0.14
19 10 0.23
21 3 0.07
22 15 0.34
23 10 0.23
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:94755452 original size:19 final size:19
Alignment explanation
Indices: 94755428--94755501 Score: 132
Period size: 19 Copynumber: 3.9 Consensus size: 19
94755418 AATCATATCT
94755428 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
94755447 TCTAAGATTACA-ATCATA
1 TCTAAGATTGCATATCATA
94755465 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
94755484 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
94755502 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
18 17 0.33
19 35 0.67
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:94755474 original size:37 final size:38
Alignment explanation
Indices: 94755405--94755501 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 38
94755395 AAATTAAATC
94755405 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC--AATCATA--TTCTAAGATTGCATATCATA
94755447 TCTAAGATTACAATCATA-TCTAAGATTGCATATCATA
1 TCTAAGATTACAATCATATTCTAAGATTGCATATCATA
*
94755484 TCTAAGATTGCATATCAT
1 TCTAAGATTACA-ATCAT
94755502 TGAAGATTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
37 30 0.57
38 5 0.09
40 7 0.13
42 11 0.21
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (38 bp):
TCTAAGATTACAATCATATTCTAAGATTGCATATCATA
Found at i:94755658 original size:21 final size:20
Alignment explanation
Indices: 94755620--94755659 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
94755610 TTGGACTTTG
**
94755620 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
94755640 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
94755660 TCTGGTCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:94755916 original size:45 final size:45
Alignment explanation
Indices: 94755865--94756125 Score: 242
Period size: 45 Copynumber: 5.8 Consensus size: 45
94755855 TGCTATATTT
* *
94755865 GATCTGCTCCCCATCTAATACAGGGACGCCAAATCTGTTATCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * *
94755910 GATCTGCTCCCCGTCTAATACAGAGACACCAAATATGCT-TCTTC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * *
94755954 AATCTGCTCCCTGTCCAATACATAGATGCCAAATCTGTTATCTCC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * *
94755999 GATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTG
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
* * * * * * *
94756044 GATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTGCTATGTCTTC
1 GATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T-TATCTTC
*
94756091 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 GATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
94756126 ATCTTGGATC
Statistics
Matches: 169, Mismatches: 38, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
43 6 0.04
44 41 0.24
45 91 0.54
46 1 0.01
47 19 0.11
48 5 0.03
49 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (45 bp):
GATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTC
Found at i:94756194 original size:78 final size:78
Alignment explanation
Indices: 94756065--94756515 Score: 681
Period size: 78 Copynumber: 5.8 Consensus size: 78
94756055 ATGTAAACAC
94756065 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
94756130 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* ** * *
94756143 ATGAAGGTCCA-ATCTGTTATGTCTTTAATCTGCTCCCTGTCTAATACAGAGATACCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94756207 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * *
94756221 ATGAAGGTCAGATTTGCTGTGTCTTCGATCTGCTTCCCGTCTAATACAGAGATGCCAAATCATTT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
94756286 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
94756299 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCTGTCTAATACTGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
94756363 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
94756377 ATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
94756442 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * **
94756455 ATGAAGGTCAGAGCTACTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
94756516 TGTTTCTTCA
Statistics
Matches: 334, Mismatches: 35, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
77 4 0.01
78 326 0.98
79 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:94756853 original size:220 final size:220
Alignment explanation
Indices: 94756471--94757046 Score: 949
Period size: 220 Copynumber: 2.6 Consensus size: 220
94756461 GTCAGAGCTA
* *
94756471 CTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTC
1 CTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
* ** * * *
94756536 TGACAATACAGAGATGCCAAATCATCTTAGA-TCTGCTTCAGCATAAACACGTGAAA-GCCAAAT
66 TGACAATATAGAGATGTTAAATCATCTTAGATTC-GCTTCAGCGTAAACACCT-AAAGGTCAAAT
* * * * *
94756599 CTGCTATGTCTTTGATCTGCTCCTTGTCAACGCAAGGATGCCAAATTATCTTGGATCTACTTCGA
129 CTACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGA
94756664 TGTGAAAACATCCAAAGGTTAGATCTG
194 TGTGAAAACATCCAAAGGTTAGATCTG
* *
94756691 CTATGTCTTCTATCTGCTCTCTGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
1 CTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
94756756 TGACAATATAGAGATGTTAAATCATCTTAGATTCGCTTCAGCGTAAACACCTAAAGGTCAAATCT
66 TGACAATATAGAGATGTTAAATCATCTTAGATTCGCTTCAGCGTAAACACCTAAAGGTCAAATCT
94756821 ACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
131 ACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
*
94756886 TGAAAACATCCGAAGGTTAGATCTG
196 TGAAAACATCCAAAGGTTAGATCTG
* *
94756911 CTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
1 CTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
*
94756976 TGACAATATAGAGATGTTAAATCATCTTGGATTCGCTTCAGCGTAAACACCTAAAGGTCAAATCT
66 TGACAATATAGAGATGTTAAATCATCTTAGATTCGCTTCAGCGTAAACACCTAAAGGTCAAATCT
94757041 ACTATG
131 ACTATG
94757047 CTTTAGCCTG
Statistics
Matches: 334, Mismatches: 20, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
219 3 0.01
220 329 0.99
221 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (220 bp):
CTATGTCTTCGATCTGCTCTCAGTCGAATATGGAGATGCCAAATTTGTTTCTTCGATTTGTTCTC
TGACAATATAGAGATGTTAAATCATCTTAGATTCGCTTCAGCGTAAACACCTAAAGGTCAAATCT
ACTATGTCTTCGATCTGCTACTTGTAAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATG
TGAAAACATCCAAAGGTTAGATCTG
Found at i:94762058 original size:13 final size:13
Alignment explanation
Indices: 94762040--94762068 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
94762030 TCTCTTCTCT
94762040 TTTAGTTTTGAGA
1 TTTAGTTTTGAGA
94762053 TTTAGTTTTGAGA
1 TTTAGTTTTGAGA
94762066 TTT
1 TTT
94762069 GGTGCAACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (13 bp):
TTTAGTTTTGAGA
Found at i:94764672 original size:16 final size:16
Alignment explanation
Indices: 94764651--94764687 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
94764641 TCCAGCACAA
94764651 CAAAGATCAACTTAGC
1 CAAAGATCAACTTAGC
94764667 CAAAGATCAACTTAGC
1 CAAAGATCAACTTAGC
94764683 CAAAG
1 CAAAG
94764688 GCCGGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.16
Consensus pattern (16 bp):
CAAAGATCAACTTAGC
Found at i:94765016 original size:41 final size:40
Alignment explanation
Indices: 94764870--94765056 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
94764860 GCTACTCGTT
* * *
94764870 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
94764910 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
94764950 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*** * * * *
94764990 CAAATGCCTTTC-GGATCTTTGTCCGGATATGGTCACTTAGCA
1 CAAATGCC-TTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
94765032 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
94765057 CATTATTCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
40 97 0.75
41 25 0.19
42 8 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:94768793 original size:5 final size:5
Alignment explanation
Indices: 94768783--94768814 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
94768773 CAATTTGTGA
94768783 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
94768815 GAACACACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:94768808 original size:9 final size:9
Alignment explanation
Indices: 94768784--94768814 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
94768774 AATTTGTGAA
94768784 AAATAAAAT
1 AAATAAAAT
94768793 AAAATAAAAT
1 -AAATAAAAT
94768803 AAATAAAAT
1 AAATAAAAT
94768812 AAA
1 AAA
94768815 GAACACACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:94770455 original size:17 final size:19
Alignment explanation
Indices: 94770413--94770456 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
94770403 ATGAAATTTT
*
94770413 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
94770432 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
94770450 AA-TATTA
1 AATTATTA
94770457 CTGTAAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:94772897 original size:25 final size:25
Alignment explanation
Indices: 94772848--94772897 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
94772838 CCTTATAATA
* * * *
94772848 TAAAAATGACCATTTTGCCCCTAGG
1 TAAAAATAACCATTGTACCCATAGG
94772873 TAAAAATAACCATTGTACCCATAGG
1 TAAAAATAACCATTGTACCCATAGG
94772898 GTTTAAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (25 bp):
TAAAAATAACCATTGTACCCATAGG
Found at i:94772961 original size:11 final size:11
Alignment explanation
Indices: 94772945--94772998 Score: 62
Period size: 11 Copynumber: 5.3 Consensus size: 11
94772935 CATGTTATGT
94772945 ATGATATGCAC
1 ATGATATGCAC
*
94772956 ATGATATG--T
1 ATGATATGCAC
94772965 ATGATATGCAC
1 ATGATATGCAC
*
94772976 ATGATATG--T
1 ATGATATGCAC
94772985 ATGATATGCAC
1 ATGATATGCAC
94772996 ATG
1 ATG
94772999 GTGTATTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 16 0.46
11 19 0.54
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:94772963 original size:20 final size:20
Alignment explanation
Indices: 94772934--94772998 Score: 121
Period size: 20 Copynumber: 3.2 Consensus size: 20
94772924 ATTTTGATAA
*
94772934 ACATGTTATGTATGATATGC
1 ACATGATATGTATGATATGC
94772954 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
94772974 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
94772994 ACATG
1 ACATG
94772999 GTGTATTCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:94772968 original size:9 final size:9
Alignment explanation
Indices: 94772940--94772992 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
94772930 ATAAACATGT
94772940 TATGTATGA
1 TATGTATGA
*
94772949 TATGCACATGA
1 TATG--TATGA
94772960 TATGTATGA
1 TATGTATGA
*
94772969 TATGCACATGA
1 TATG--TATGA
94772980 TATGTATGA
1 TATGTATGA
94772989 TATG
1 TATG
94772993 CACATGGTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:94773168 original size:24 final size:23
Alignment explanation
Indices: 94773048--94773166 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
94773038 GAGGAAGTGC
94773048 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94773071 AAATGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94773094 GAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
94773117 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
94773140 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
94773164 AAA
1 AAA
94773167 AGAGGCTAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
23 68 0.76
24 22 0.24
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:94773416 original size:31 final size:31
Alignment explanation
Indices: 94773381--94773444 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
94773371 CGTTTACAGT
94773381 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
94773412 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
94773443 AA
1 AA
94773445 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:94779910 original size:3 final size:3
Alignment explanation
Indices: 94779902--94779930 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
94779892 AATAGAATTG
94779902 TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
94779931 AGGGACTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:94783540 original size:12 final size:12
Alignment explanation
Indices: 94783523--94783548 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94783513 AATATTTGTG
94783523 GAAGGAGATCCA
1 GAAGGAGATCCA
94783535 GAAGGAGATCCA
1 GAAGGAGATCCA
94783547 GA
1 GA
94783549 GATGGCAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.35, T:0.08
Consensus pattern (12 bp):
GAAGGAGATCCA
Found at i:94786843 original size:22 final size:21
Alignment explanation
Indices: 94786813--94786878 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
94786803 TACAAATTAA
94786813 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
94786835 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
94786856 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
94786875 ATCT
1 ATCT
94786879 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:94786865 original size:19 final size:19
Alignment explanation
Indices: 94786830--94786908 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
94786820 AGATTACAAG
94786830 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
94786851 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94786870 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
94786887 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
94786906 ATC
1 ATC
94786909 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:94786872 original size:14 final size:15
Alignment explanation
Indices: 94786852--94786908 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
94786842 AGATTGCATA
94786852 TCATATCTAAGATTG
1 TCATATCTAAGATTG
94786867 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
94786886 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
94786903 -CATATC
1 TCATATC
94786909 CTTAAAGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:94786894 original size:36 final size:39
Alignment explanation
Indices: 94786830--94786908 Score: 128
Period size: 36 Copynumber: 2.1 Consensus size: 39
94786820 AGATTACAAG
94786830 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
94786870 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
94786906 ATC
1 ATC
94786909 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 23 0.59
38 7 0.18
39 1 0.03
40 8 0.21
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:94787381 original size:87 final size:89
Alignment explanation
Indices: 94787281--94787463 Score: 234
Period size: 87 Copynumber: 2.1 Consensus size: 89
94787271 AATCTGCTAC
* * *
94787281 CTTCGATTCGTTCCTTG-ACAATATAGA-GATG-TCAAATCATCTTGGATCTGCTTC-A-GCGTA
1 CTTCGATTCGTTCCTTGTA-AACACA-ATGATGCT-AAATCATCTTGGATCTGCTTCAATGCGAA
94787341 AACA-CCTGAAGGTCAGATCTGCTATGT
63 AACATCC-GAAGGTCAGATCTGCTATGT
* * *
94787368 CTTCGATTTGTTCCTTGTAAACACAATGATGCTAAATCATCTTGGATCTGCTTCAATGTGAAAAT
1 CTTCGATTCGTTCCTTGTAAACACAATGATGCTAAATCATCTTGGATCTGCTTCAATGCGAAAAC
94787433 ATCCGAAGGTCAGATCTGCTATGT
66 ATCCGAAGGTCAGATCTGCTATGT
94787457 CTTCGAT
1 CTTCGAT
94787464 CTGCTCTCTG
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
86 1 0.01
87 45 0.54
88 3 0.04
89 33 0.39
90 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (89 bp):
CTTCGATTCGTTCCTTGTAAACACAATGATGCTAAATCATCTTGGATCTGCTTCAATGCGAAAAC
ATCCGAAGGTCAGATCTGCTATGT
Found at i:94787627 original size:220 final size:220
Alignment explanation
Indices: 94787232--94788245 Score: 1557
Period size: 220 Copynumber: 4.6 Consensus size: 220
94787222 TGTCATGTTG
* * ** * ** *
94787232 ATGTTTTCGATCTTCTCTCCGTCGAATACAGAGATGTCAAATCTGCTACCTTCGATTCGTTC-CT
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTG-TTTCTTCGATTTGTTCTC-
* * * *
94787296 TGACAATATAGAGATGTCAAATCATCTTGGATCTGCTTCAGCGTAAACACCTGAAGGTCAGATCT
64 TGACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCT
* * *
94787361 GCTATGTCTTCGATTTGTTCCTTGTAAACACAATG-ATGCTAAATCATCTTGGATCTGCTTCAAT
129 GCTATGTCTTCGATTTGCTCCTTGTAAACACAA-GAATGCCAAATCATCTTGGATCTGCTTCGAT
* *
94787425 GTGAAAATATCCGAAGGTCAGATCTGCT
193 GTGAAAACATCCAAAGGTCAGATCTGCT
* * * *
94787453 ATGTCTTCGATCTGCTCTCTGTCGAATATGGAGATGCCAAATCTGTTTATTCAATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
* * *
94787518 ACAATACAGAGATGTCAAATCATCTTAGATCTACTTCAATGTAAACACCTGAAGGTCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
* * *
94787583 TATGTCTTTGATTTTCTCCTTGTAAACACAAGAATGCCAAATCATATTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
94787648 AAAACATCCAAAGGTCAGATCTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
94787673 ATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
*
94787738 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGA
66 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
94787803 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
131 TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
*
94787868 AAAACATCCAAAGGTCAGATTTGCT
196 AAAACATCCAAAGGTCAGATCTGCT
* *
94787893 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCCTCGATTTGTTC-CAG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTC-T
* * *
94787957 GACAATACAAAGATGCCAAATCATCTTGGATCTGCTTCAGTGTAAACACCTGAAGGTCAGATCTA
65 GACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTG
* *
94788022 CTATGTCTTTGATTTGCCCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
130 CTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGT
* * *
94788087 GAAAACATCCAAATGTCAGATTTACT
195 GAAAACATCCAAAGGTCAGATCTGCT
*
94788113 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTG
1 ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
** * *
94788178 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGCATGAACACCTGAAGGCCAGATCTGC
66 ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
94788243 TAT
131 TAT
94788246 ACTTTAACCT
Statistics
Matches: 733, Mismatches: 56, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
219 2 0.00
220 690 0.94
221 41 0.06
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
ATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTG
ACAATACAGAGATGCCAAATCATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGC
TATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCGATGTG
AAAACATCCAAAGGTCAGATCTGCT
Found at i:94789288 original size:6 final size:6
Alignment explanation
Indices: 94789277--94789332 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
94789267 GGCCTCTCCA
* *
94789277 TTTTTC TTTTTC TTTTTTGTC TTTTTT TTTTATT TTTTTC TTTTTC -TTTTC
1 TTTTTC TTTTTC --TTTT-TC TTTTTC TTTT-TC TTTTTC TTTTTC TTTTTC
94789328 TTTTT
1 TTTTT
94789333 TTCCTTTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
5 5 0.12
6 22 0.51
7 10 0.23
8 4 0.09
9 2 0.05
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:94789301 original size:9 final size:8
Alignment explanation
Indices: 94789283--94789343 Score: 56
Period size: 8 Copynumber: 7.6 Consensus size: 8
94789273 TCCATTTTTC
94789283 TTTTTCTT
1 TTTTTCTT
94789291 TTTTGTCTT
1 TTTT-TCTT
94789300 TTTTT-TT
1 TTTTTCTT
94789307 TATTTT-TT
1 T-TTTTCTT
*
94789315 TCTTT-TT
1 TTTTTCTT
*
94789322 CTTTTCTT
1 TTTTTCTT
94789330 TTTTTCCTT
1 TTTTT-CTT
94789339 TTTTT
1 TTTTT
94789344 TAAATAGATG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
7 11 0.24
8 18 0.40
9 16 0.36
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:94789303 original size:11 final size:10
Alignment explanation
Indices: 94789278--94789344 Score: 68
Period size: 10 Copynumber: 6.8 Consensus size: 10
94789268 GCCTCTCCAT
94789278 TTTTCTTTTTC
1 TTTT-TTTTTC
*
94789289 -TTTTTTGTC
1 TTTTTTTTTC
94789298 TTTTTTTTT-
1 TTTTTTTTTC
*
94789307 TATTTTTTTC
1 TTTTTTTTTC
94789317 TTTTTCTTTTC
1 TTTTT-TTTTC
*
94789328 -TTTTTTTCC
1 TTTTTTTTTC
94789337 TTTTTTTT
1 TTTTTTTT
94789345 AAATAGATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
9 17 0.36
10 25 0.53
11 5 0.11
ACGTcount: A:0.01, C:0.12, G:0.01, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:94789312 original size:19 final size:19
Alignment explanation
Indices: 94789277--94789344 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 19
94789267 GGCCTCTCCA
*
94789277 TTTTTCTTTTTCTTTTTTGTC
1 TTTTT-TTTTTATTTTTT-TC
94789298 TTTTTTTTTTATTTTTTTC
1 TTTTTTTTTTATTTTTTTC
* *
94789317 TTTTTCTTTTCTTTTTTTCC
1 TTTTTTTTTTATTTTTTT-C
94789337 TTTTTTTT
1 TTTTTTTT
94789345 AAATAGATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
19 18 0.43
20 19 0.45
21 5 0.12
ACGTcount: A:0.01, C:0.12, G:0.01, T:0.85
Consensus pattern (19 bp):
TTTTTTTTTTATTTTTTTC
Found at i:94789331 original size:28 final size:28
Alignment explanation
Indices: 94789283--94789343 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
94789273 TCCATTTTTC
*
94789283 TTTTTCTTTTTTGTCTTTTTTTTTTATT
1 TTTTTCTTTTTTGTCTTTTTTTTTCATT
*
94789311 TTTTTCTTTTTCT-T-TTCTTTTTTTCCTT
1 TTTTTCTTTTT-TGTCTT-TTTTTTTCATT
94789339 TTTTT
1 TTTTT
94789344 TAAATAGATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 2 0.07
28 26 0.90
29 1 0.03
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (28 bp):
TTTTTCTTTTTTGTCTTTTTTTTTCATT
Found at i:94793368 original size:29 final size:29
Alignment explanation
Indices: 94793310--94793368 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
94793300 AATACATAAA
* * *
94793310 ATATATATAAAATATATAAAAGAATTAGT
1 ATATATAGAAAATATATAAAAAAATGAGT
94793339 ATATATAGAAAATATA-AAATAAAATGAGT
1 ATATATAGAAAATATATAAA-AAAATGAGT
94793368 A
1 A
94793369 ATTGTTAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.12
29 23 0.88
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (29 bp):
ATATATAGAAAATATATAAAAAAATGAGT
Found at i:94793760 original size:26 final size:24
Alignment explanation
Indices: 94793723--94793772 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
94793713 ATAGATAATA
94793723 TATATAAAAAAACATATAATAAATGT
1 TATAT-AAAAAA-ATATAATAAATGT
* *
94793749 TATATAATAAAATATAATATATGT
1 TATATAAAAAAATATAATAAATGT
94793773 AGGAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 12 0.55
25 5 0.23
26 5 0.23
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (24 bp):
TATATAAAAAAATATAATAAATGT
Found at i:94813324 original size:39 final size:40
Alignment explanation
Indices: 94813170--94813324 Score: 240
Period size: 40 Copynumber: 3.9 Consensus size: 40
94813160 ACTTGAGGTA
94813170 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * *
94813210 TTATCCGGGCTTAAAAACCCGCAGGCTTTGTGCTGGAATT
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
*
94813250 TTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * *
94813290 TTATCCGGGC-TAGAGACCCGCAGGCTACGAGCTGG
1 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGG
94813325 TATTATACCG
Statistics
Matches: 104, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 22 0.21
40 82 0.79
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (40 bp):
TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
Found at i:94822366 original size:27 final size:27
Alignment explanation
Indices: 94822335--94822512 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94822325 TAAATTGTAC
94822335 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94822362 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94822388 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94822416 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
94822444 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
94822471 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94822498 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94822513 GACTCGATGT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94822503 original size:82 final size:81
Alignment explanation
Indices: 94822332--94822512 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
94822322 GATTAAATTG
*
94822332 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
94822397 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94822413 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
**
94822477 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
94822495 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94822513 GACTCGATGT
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
81 20 0.24
82 65 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Done.