Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 306 of 320
Found at i:97627631 original size:151 final size:151
Alignment explanation
Indices: 97627357--97627723 Score: 626
Period size: 151 Copynumber: 2.4 Consensus size: 151
97627347 CAAACAGACC
* *
97627357 CTTAGTACTATACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
* *
97627422 GTGATCAAAGTTAACGGGTATGCATAATAGCCTGCACTTAGTACTACACATGCGACCTATCAATC
66 GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
* *
97627487 TGGTACATGTAGTAGCCTGCA
131 TGGTACACGTAGTAGCCTACA
*
97627508 CTTAGTACTACACATGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
* *
97627573 GTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
66 GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
97627638 TGGTACACGTAGTAGCCTACA
131 TGGTACACGTAGTAGCCTACA
* * *
97627659 CTTAGTACTACACACGTGACTTAACCATTTGATACATGTAGTAGCCTGAACTTAGTACTACACAC
1 CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
97627724 ATGACTCACA
Statistics
Matches: 203, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 203 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (151 bp):
CTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTATTACACAC
GTGATCAAAGTTAACGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCAACCTATCAATC
TGGTACACGTAGTAGCCTACA
Found at i:97627723 original size:50 final size:50
Alignment explanation
Indices: 97627357--97627729 Score: 318
Period size: 50 Copynumber: 7.4 Consensus size: 50
97627347 CAAACAGACC
*
97627357 CTTAGTACTATACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * ** * * * ** * *
97627407 CTTAGTATTACACACGTGA-TCAAAGTTAACGGGTATGCATAATAGCCTGCA
1 CTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGCA
* * * * * * *
97627458 CTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* *
97627508 CTTAGTACTACACATGTGACTTAACCATTTGATACACGTAGTAGCCTGCA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * ** * * * * *
97627558 CTTAGTATTACACACGTGA-TCGAAGTTAACGGGTACGCATAGTAGCCTGCA
1 CTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTAGTAGCCTGCA
* ** * * * * *
97627609 CTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGCCTACA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
* * *
97627659 CTTAGTACTACACACGTGACTTAACCATTTGATACATGTAGTAGCCTGAA
1 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
*
97627709 CTTAGTACTACACACATGACT
1 CTTAGTACTACACACGTGACT
97627730 CACAATGGAT
Statistics
Matches: 246, Mismatches: 71, Indels: 12
0.75 0.22 0.04
Matches are distributed among these distances:
49 2 0.01
50 176 0.72
51 68 0.28
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (50 bp):
CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTGCA
Found at i:97630511 original size:22 final size:22
Alignment explanation
Indices: 97630476--97630524 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
97630466 ATATCCAAAC
97630476 AATAATAACAAAAT-AGTAGCAA
1 AATAATAACAAAATGA-TAGCAA
* * *
97630498 TATAATAGCGAAATGATAGCAA
1 AATAATAACAAAATGATAGCAA
97630520 AATAA
1 AATAA
97630525 CAATATAACA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.20
Consensus pattern (22 bp):
AATAATAACAAAATGATAGCAA
Found at i:97653080 original size:17 final size:18
Alignment explanation
Indices: 97653060--97653093 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97653050 TTCTTTTTCT
97653060 TTGTGTT-TTTTTTTCAA
1 TTGTGTTATTTTTTTCAA
*
97653077 TTGTTTTATTTTTTTCA
1 TTGTGTTATTTTTTTCA
97653094 CTTTACCCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.74
Consensus pattern (18 bp):
TTGTGTTATTTTTTTCAA
Found at i:97658025 original size:23 final size:23
Alignment explanation
Indices: 97657997--97658090 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
97657987 ATGTGTGTAT
* *
97657997 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
97658020 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
97658043 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97658066 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97658089 CT
1 CT
97658091 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:97660881 original size:23 final size:23
Alignment explanation
Indices: 97660853--97660946 Score: 143
Period size: 23 Copynumber: 4.1 Consensus size: 23
97660843 ATGTGTGTAT
*
97660853 CTTTTCATATTCAAGTCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
97660876 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
97660899 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97660922 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
97660945 CT
1 CT
97660947 CTTCTAACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:97662424 original size:19 final size:20
Alignment explanation
Indices: 97662388--97662428 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
97662378 TTTTAAAAAG
*
97662388 AAAAAATAAGTAATTAACAT
1 AAAAAATAAGTAAATAACAT
*
97662408 AAAAAA-AATTAAATAACAT
1 AAAAAATAAGTAAATAACAT
97662427 AA
1 AA
97662429 GAAACTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (20 bp):
AAAAAATAAGTAAATAACAT
Found at i:97662960 original size:23 final size:21
Alignment explanation
Indices: 97662912--97662978 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
97662902 ACATTAAAAG
97662912 TATAAAAATTAGAAATAAATA
1 TATAAAAATTAGAAATAAATA
*
97662933 CATAAAAATATCAGAAA-AATATA
1 TATAAAAAT-T-AGAAATAA-ATA
** *
97662956 TATAAATTTTAGAAAAAAATA
1 TATAAAAATTAGAAATAAATA
97662977 TA
1 TA
97662979 AATTATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 18 0.47
22 6 0.16
23 14 0.37
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.28
Consensus pattern (21 bp):
TATAAAAATTAGAAATAAATA
Found at i:97662987 original size:21 final size:21
Alignment explanation
Indices: 97662945--97662982 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
97662935 TAAAAATATC
97662945 AGAAAAATATATATAAATTTT
1 AGAAAAATATATATAAATTTT
97662966 AGAAAAA-A-ATATAAATT
1 AGAAAAATATATATAAATT
97662983 ATTTAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 1 0.06
21 7 0.41
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AGAAAAATATATATAAATTTT
Found at i:97663301 original size:19 final size:20
Alignment explanation
Indices: 97663266--97663317 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
97663256 TTTTAAACTT
**
97663266 TTTTAATATTATAATTTTCTA
1 TTTTAAT-TTATAATTTAATA
97663287 TTTTAATTT-TAATTTAATA
1 TTTTAATTTATAATTTAATA
97663306 TTTTAA-TTATAA
1 TTTTAATTTATAA
97663318 ATAAACTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 2 0.07
19 17 0.61
20 2 0.07
21 7 0.25
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAATTTATAATTTAATA
Found at i:97663562 original size:16 final size:16
Alignment explanation
Indices: 97663543--97663581 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
97663533 TATTTTCATT
97663543 TAATAATTTTTTTAAA
1 TAATAATTTTTTTAAA
*
97663559 TAAT-ATATTTTTAAA
1 TAATAATTTTTTTAAA
97663574 TAA-AATTT
1 TAATAATTT
97663582 CTAATTTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATAATTTTTTTAAA
Found at i:97675345 original size:40 final size:35
Alignment explanation
Indices: 97675271--97675363 Score: 105
Period size: 40 Copynumber: 2.5 Consensus size: 35
97675261 CATGGAAAAG
*
97675271 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATAATGAGT
*
97675306 TGTGAAACGTAGGTATGGTATTATCAAATCTATAATGAGT
1 TGTGAAACGTAGGTATGG---TATC--ATCCATAATGAGT
**
97675346 TAAGAAACGTAGGTATGG
1 TGTGAAACGTAGGTATGG
97675364 CATTTCCCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
35 18 0.37
38 4 0.08
40 27 0.55
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATAATGAGT
Found at i:97681242 original size:21 final size:20
Alignment explanation
Indices: 97681197--97681244 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
97681187 CCCGAGCCTC
* *
97681197 AAACCTTAAACTTGAATCTT
1 AAACCTTAAACTTGAACCCT
97681217 AAACCTTAAACCTTGAACCCT
1 AAACCTTAAA-CTTGAACCCT
*
97681238 GAACCTT
1 AAACCTT
97681245 GAGGTTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.38, C:0.27, G:0.06, T:0.29
Consensus pattern (20 bp):
AAACCTTAAACTTGAACCCT
Found at i:97681364 original size:22 final size:23
Alignment explanation
Indices: 97681316--97681381 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 23
97681306 TGGAGTTACT
*
97681316 GTTTACGAGTTTAGGATTTAGGA
1 GTTTAAGAGTTTAGGATTTAGGA
* *
97681339 -TTTAAGAGTTTGGGA-TTATGA
1 GTTTAAGAGTTTAGGATTTAGGA
* *
97681360 GTTT-AGTGTTTGAGAATTTAGG
1 GTTTAAGAGTTT-AGGATTTAGG
97681382 TTTTGAGGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 11 0.33
22 18 0.55
23 4 0.12
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (23 bp):
GTTTAAGAGTTTAGGATTTAGGA
Found at i:97684426 original size:22 final size:21
Alignment explanation
Indices: 97684401--97684441 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97684391 TAAGAATTTT
* *
97684401 AGAGAGATTATGAGAGAAAACA
1 AGAGAAATT-TGAAAGAAAACA
97684423 AGAGAAATTTGAAAGAAAA
1 AGAGAAATTTGAAAGAAAA
97684442 ATGATAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.15
Consensus pattern (21 bp):
AGAGAAATTTGAAAGAAAACA
Found at i:97686370 original size:3 final size:3
Alignment explanation
Indices: 97686362--97686419 Score: 64
Period size: 3 Copynumber: 19.7 Consensus size: 3
97686352 AAAATAGTTA
* * * * *
97686362 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAC GAT GAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
97686410 AAT -AT AAT AA
1 AAT AAT AAT AA
97686420 AAAAAGTTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:97686558 original size:29 final size:29
Alignment explanation
Indices: 97686509--97686567 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
97686499 AAAATAATGA
* *
97686509 AAATAATATTAATATATAAATAGAAATAG
1 AAATAATAATAATATAGAAATAGAAATAG
*
97686538 AAAT-ATAATAATAGTAGAAATATAAATAG
1 AAATAATAATAATA-TAGAAATAGAAATAG
97686567 A
1 A
97686568 TAAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (29 bp):
AAATAATAATAATATAGAAATAGAAATAG
Found at i:97686582 original size:15 final size:14
Alignment explanation
Indices: 97686519--97686589 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 14
97686509 AAATAATATT
* *
97686519 AATATATAAATAGA
1 AATAGATAAATAAA
*
97686533 AATAGA-AATATAAT
1 AATAGATAA-ATAAA
* *
97686547 AATAGTAGAAATATA
1 AATAG-ATAAATAAA
97686562 AATAGATAAATAAA
1 AATAGATAAATAAA
*
97686576 AATTAGATGAATAA
1 AA-TAGATAAATAA
97686590 TAGTATTAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
13 2 0.04
14 22 0.49
15 19 0.42
16 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (14 bp):
AATAGATAAATAAA
Found at i:97686644 original size:15 final size:15
Alignment explanation
Indices: 97686626--97686658 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
97686616 ATAGAATAGC
97686626 AATAATATATTAGTT
1 AATAATATATTAGTT
97686641 AATAATATATTAGTT
1 AATAATATATTAGTT
97686656 AAT
1 AAT
97686659 TTAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (15 bp):
AATAATATATTAGTT
Found at i:97699623 original size:30 final size:31
Alignment explanation
Indices: 97699570--97699635 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
97699560 AATTATGTAG
*
97699570 AATTAAATTAAAATTAATGTTTTATACATAT
1 AATTAAATTAAAATAAATGTTTTATACATAT
*
97699601 AATTAAA-TAAAATAAAAT-TTTTATACGTAT
1 AATTAAATTAAAAT-AAATGTTTTATACATAT
97699631 AATTA
1 AATTA
97699636 CTGGAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (31 bp):
AATTAAATTAAAATAAATGTTTTATACATAT
Found at i:97708421 original size:19 final size:19
Alignment explanation
Indices: 97708399--97708436 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
97708389 AAGAAGTCAT
97708399 ATAAAAAAATTTAAAATAA
1 ATAAAAAAATTTAAAATAA
* *
97708418 ATAATATAATTTAAAATAA
1 ATAAAAAAATTTAAAATAA
97708437 GTAATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAAAAAATTTAAAATAA
Found at i:97708441 original size:19 final size:19
Alignment explanation
Indices: 97708406--97708444 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
97708396 CATATAAAAA
97708406 AATTTAAAATAAATAATAT
1 AATTTAAAATAAATAATAT
*
97708425 AATTTAAAATAAGTAATAT
1 AATTTAAAATAAATAATAT
97708444 A
1 A
97708445 TACAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (19 bp):
AATTTAAAATAAATAATAT
Found at i:97708609 original size:28 final size:26
Alignment explanation
Indices: 97708554--97708624 Score: 72
Period size: 28 Copynumber: 2.7 Consensus size: 26
97708544 ACATATATAG
* *
97708554 ATTTAAAATAGATAATATATGTACAAAA
1 ATTT-AAATAAATAATATATATA-AAAA
*
97708582 GTTTACAATAAATAATATATATAAAAA
1 ATTTA-AATAAATAATATATATAAAAA
*
97708609 AATT-AATAAATAATAT
1 ATTTAAATAAATAATAT
97708625 GTGAAAAAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
25 12 0.32
27 7 0.19
28 18 0.49
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (26 bp):
ATTTAAATAAATAATATATATAAAAA
Found at i:97708776 original size:22 final size:21
Alignment explanation
Indices: 97708727--97708776 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
97708717 TTTAAAATAG
*
97708727 ATAATATATAAAATAACTTAAG
1 ATAA-ATATAAAATAACTTAAA
*
97708749 AT-AATATATAATAAGCTTAAA
1 ATAAATATAAAATAA-CTTAAA
97708770 ATAAATA
1 ATAAATA
97708777 ATGCGTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 10 0.42
21 8 0.33
22 6 0.25
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (21 bp):
ATAAATATAAAATAACTTAAA
Found at i:97709252 original size:25 final size:26
Alignment explanation
Indices: 97709223--97709280 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
97709213 TTTATTTCAT
*
97709223 TAAATAAAAAAAATTT-AAAATATAA
1 TAAATAAAAAAAATTTAAAAACATAA
* * *
97709248 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAAAATTTAAAAACATAA
97709274 -AAATAAA
1 TAAATAAA
97709281 TATTAAAACA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (26 bp):
TAAATAAAAAAAATTTAAAAACATAA
Found at i:97709303 original size:21 final size:21
Alignment explanation
Indices: 97709254--97709312 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
97709244 ATAATAAATC
*
97709254 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
97709274 AAATAAATATTAAAACAAATAA
1 AAAT-AATATTAAAACAAATAA
*
97709296 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
97709313 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 4 0.12
21 18 0.53
22 12 0.35
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:97709389 original size:15 final size:16
Alignment explanation
Indices: 97709359--97709391 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
97709349 AAATGGTTAT
97709359 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
97709376 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
97709391 A
1 A
97709392 AAATATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:97722204 original size:15 final size:15
Alignment explanation
Indices: 97722184--97722212 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
97722174 CACCATAAGT
97722184 TTAATCTACCCTTGA
1 TTAATCTACCCTTGA
97722199 TTAATCTACCCTTG
1 TTAATCTACCCTTG
97722213 CTTCGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (15 bp):
TTAATCTACCCTTGA
Found at i:97722247 original size:25 final size:25
Alignment explanation
Indices: 97722219--97722269 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
97722209 CTTGCTTCGA
97722219 TGGTGATAGTTAATGGAGATTTTTT
1 TGGTGATAGTTAATGGAGATTTTTT
97722244 TGGTGATAGTTAATGGAGATTTTTT
1 TGGTGATAGTTAATGGAGATTTTTT
97722269 T
1 T
97722270 TTCTTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (25 bp):
TGGTGATAGTTAATGGAGATTTTTT
Found at i:97722582 original size:78 final size:77
Alignment explanation
Indices: 97722437--97722581 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 77
97722427 TGACTTATTT
* * * *
97722437 TCATTGTTATCTTTGTAGTTGCCTCGGACCAACGGCGAACTTTTCGTCTTTTTTTTTTCAAGTTT
1 TCATTGTTATCTTTCTAGTTGCCTCGGACCAACAGCAAACTTTTCGTC-TTCTTTTTTCAAGTTT
97722502 TTTAGAGGTTTTC
65 TTTAGAGGTTTTC
* *
97722515 TCATTGTTATCTTTCTAGTTGCCTTGGATCAACAGCAAACTTTTCGTC-TCTTTTTTCAAGGTTT
1 TCATTGTTATCTTTCTAGTTGCCTCGGACCAACAGCAAACTTTTCGTCTTCTTTTTTCAA-GTTT
97722579 TTT
65 TTT
97722582 TTTTAAGAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 10 0.17
77 7 0.12
78 43 0.72
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.49
Consensus pattern (77 bp):
TCATTGTTATCTTTCTAGTTGCCTCGGACCAACAGCAAACTTTTCGTCTTCTTTTTTCAAGTTTT
TTAGAGGTTTTC
Found at i:97725309 original size:11 final size:11
Alignment explanation
Indices: 97725260--97725309 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
97725250 CTGTTTTTTG
*
97725260 ATTATTTTGCT
1 ATTATTTTACT
*
97725271 ATTATTTGACT
1 ATTATTTTACT
*
97725282 ATTATATTACT
1 ATTATTTTACT
* *
97725293 ACTATTTTATT
1 ATTATTTTACT
97725304 ATTATT
1 ATTATT
97725310 ATTTGGATAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (11 bp):
ATTATTTTACT
Found at i:97725335 original size:36 final size:36
Alignment explanation
Indices: 97725270--97725343 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
97725260 ATTATTTTGC
*
97725270 TATTATTTGACTATTATATTACTACTATTTTATTAT
1 TATTATTTGACTATTATATAACTACTATTTTATTAT
*
97725306 TATTATTTGGA-TATTGTATAACT-CTTATTTTATTAT
1 TATTATTT-GACTATTATATAACTAC-TATTTTATTAT
97725342 TA
1 TA
97725344 ATTTTACTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 1 0.03
36 31 0.91
37 2 0.06
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (36 bp):
TATTATTTGACTATTATATAACTACTATTTTATTAT
Found at i:97726241 original size:36 final size:36
Alignment explanation
Indices: 97726194--97726266 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
97726184 CTTCAAGTCC
97726194 CAAGTCCCTCTTCACAAGATACCTGTAAGGTTCTTT
1 CAAGTCCCTCTTCACAAGATACCTGTAAGGTTCTTT
97726230 CAAGTCCCTCTTCACAAGATACCTGTAAGGTTCTTT
1 CAAGTCCCTCTTCACAAGATACCTGTAAGGTTCTTT
97726266 C
1 C
97726267 TTTTCTTTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.33
Consensus pattern (36 bp):
CAAGTCCCTCTTCACAAGATACCTGTAAGGTTCTTT
Found at i:97728882 original size:32 final size:32
Alignment explanation
Indices: 97728841--97728904 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
97728831 TTTGTAGTAA
*
97728841 GAAAAAAATTGTTTTCTTTATTTGATGCCATT
1 GAAAAAAATTGTTTTCTTTATTTGAGGCCATT
97728873 GAAAAAAATTGTTTTCTTTATTTGAGGCCATT
1 GAAAAAAATTGTTTTCTTTATTTGAGGCCATT
97728905 TGTGACTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (32 bp):
GAAAAAAATTGTTTTCTTTATTTGAGGCCATT
Found at i:97734514 original size:63 final size:63
Alignment explanation
Indices: 97734415--97734542 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
97734405 GTTCTTACTA
97734415 AGCCATTGTCTGCTTCTAAATTTTGTCGCCTTCGAAACCTTCTTCGAGTTTCAGAATTTGGAT
1 AGCCATTGTCTGCTTCTAAATTTTGTCGCCTTCGAAACCTTCTTCGAGTTTCAGAATTTGGAT
97734478 AGCCATTGTCTGCTTCTAAATTTTGTCGCCTTCGAAACCTTCTTCGAGTTTCAGAATTTGGAT
1 AGCCATTGTCTGCTTCTAAATTTTGTCGCCTTCGAAACCTTCTTCGAGTTTCAGAATTTGGAT
97734541 AG
1 AG
97734543 TTTGGTGAAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (63 bp):
AGCCATTGTCTGCTTCTAAATTTTGTCGCCTTCGAAACCTTCTTCGAGTTTCAGAATTTGGAT
Found at i:97740803 original size:13 final size:13
Alignment explanation
Indices: 97740785--97740814 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
97740775 CAAGTCCATT
*
97740785 AAATTTGATTAAA
1 AAATTTAATTAAA
97740798 AAATTTAATTAAA
1 AAATTTAATTAAA
97740811 AAAT
1 AAAT
97740815 ATTTTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (13 bp):
AAATTTAATTAAA
Found at i:97741659 original size:28 final size:28
Alignment explanation
Indices: 97741627--97741697 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
97741617 TACAAGTCAA
* *
97741627 GTACCAACTAGGTACAAAAAAAGTTTAG
1 GTACCAACTAAGTACAAAAAAAGTTCAG
* *
97741655 GTACCAACTAAGTAAAAAAAAAGTTCAT
1 GTACCAACTAAGTACAAAAAAAGTTCAG
*
97741683 ATACCAACTAAGTAC
1 GTACCAACTAAGTAC
97741698 TTTTAGACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (28 bp):
GTACCAACTAAGTACAAAAAAAGTTCAG
Found at i:97744956 original size:31 final size:29
Alignment explanation
Indices: 97744892--97744960 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 29
97744882 ATGATAATTT
* * * *
97744892 AAGTGACAAAAATGTAATATTTCAAACAT
1 AAGTGACTAAAATGTAATAATGCAAACAA
97744921 AAGTGACTAAAATGTAATCTAATGCAAACAA
1 AAGTGACTAAAATGTAA--TAATGCAAACAA
97744952 AAGTGACTA
1 AAGTGACTA
97744961 TTTTTGTAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.47
31 18 0.53
ACGTcount: A:0.51, C:0.12, G:0.13, T:0.25
Consensus pattern (29 bp):
AAGTGACTAAAATGTAATAATGCAAACAA
Found at i:97745808 original size:14 final size:14
Alignment explanation
Indices: 97745789--97745815 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
97745779 TATGACTAGT
97745789 AAATGAATTTAACA
1 AAATGAATTTAACA
97745803 AAATGAATTTAAC
1 AAATGAATTTAAC
97745816 TATTATTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.30
Consensus pattern (14 bp):
AAATGAATTTAACA
Found at i:97751957 original size:20 final size:20
Alignment explanation
Indices: 97751915--97751957 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
97751905 GTTTAATTGG
*
97751915 ATATAAAATATGTATTTAGA
1 ATATAAAATATGTATTTAAA
*
97751935 ATAT-AAATGTGTATTTGAAA
1 ATATAAAATATGTATTT-AAA
97751955 ATA
1 ATA
97751958 ATATAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.40
Consensus pattern (20 bp):
ATATAAAATATGTATTTAAA
Found at i:97753943 original size:13 final size:14
Alignment explanation
Indices: 97753914--97753947 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
97753904 TGCTTCTACT
*
97753914 TAATAAGAAATTAA
1 TAATAATAAATTAA
97753928 TAATAATAAA-TAA
1 TAATAATAAATTAA
97753941 TAATAAT
1 TAATAAT
97753948 CAAACTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
TAATAATAAATTAA
Found at i:97757738 original size:3 final size:3
Alignment explanation
Indices: 97757723--97757757 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
97757713 TTGTATTTCT
97757723 AGA AGA A-A A-A AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
97757758 AAGCATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:97761588 original size:15 final size:15
Alignment explanation
Indices: 97761565--97761595 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
97761555 TCAAATTTCC
*
97761565 CTTTTTTCTTTCTTT
1 CTTTCTTCTTTCTTT
97761580 CTTTCTTCTTTCTTT
1 CTTTCTTCTTTCTTT
97761595 C
1 C
97761596 ACGTTTGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
CTTTCTTCTTTCTTT
Found at i:97767501 original size:4 final size:4
Alignment explanation
Indices: 97767488--97767522 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
97767478 TCAAATTTCC
97767488 CTTT -TTT CTTT CTTT CTTT CTTT C-TT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
97767523 ACGTTTGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 23 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:97769042 original size:42 final size:42
Alignment explanation
Indices: 97768979--97769105 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
97768969 CTTCGTTTTC
** * *
97768979 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
97769022 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
* * *
97769063 TCGATGCTAGAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
97769104 TC
1 TC
97769106 TCACTGATGC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
41 10 0.14
42 61 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:97769247 original size:31 final size:31
Alignment explanation
Indices: 97769212--97769329 Score: 182
Period size: 31 Copynumber: 3.8 Consensus size: 31
97769202 CTTGTCACTT
* * *
97769212 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATTAG
*
97769243 GTAGCCGGAGCTACCATTTTTCACTGATTAG
1 GTAGCCGGAGCTACCACTTTTCACTGATTAG
*
97769274 GTAGCCGGAGCTACTACTTTTCACTGATTAG
1 GTAGCCGGAGCTACCACTTTTCACTGATTAG
*
97769305 GTAGCTGGAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
97769330 TGTCATTTGT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (31 bp):
GTAGCCGGAGCTACCACTTTTCACTGATTAG
Found at i:97769411 original size:50 final size:50
Alignment explanation
Indices: 97769313--97769481 Score: 268
Period size: 50 Copynumber: 3.4 Consensus size: 50
97769303 AGGTAGCTGG
* * *
97769313 AGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCGA
1 AGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGTGTAGCCGA
97769364 AGCTATCACTTATCACTTTCACTTT-TCCTTGATCAGATAAGTGTAGCCGA
1 AGCTATCACTTATCACTTTCA-TTTGTCCTTGATCAGATAAGTGTAGCCGA
* *
97769414 AGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGTCGA
1 AGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGA
97769464 AGCTATCACTTATCACTT
1 AGCTATCACTTATCACTT
97769482 GTTGCCATGG
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
49 3 0.03
50 88 0.80
51 19 0.17
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (50 bp):
AGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGTGTAGCCGA
Found at i:97775725 original size:15 final size:15
Alignment explanation
Indices: 97775705--97775734 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
97775695 AAAACCATGG
*
97775705 CTCCTTCTTCTTCTT
1 CTCCTTCATCTTCTT
97775720 CTCCTTCATCTTCTT
1 CTCCTTCATCTTCTT
97775735 GTTCTGCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.40, G:0.00, T:0.57
Consensus pattern (15 bp):
CTCCTTCATCTTCTT
Found at i:97778650 original size:26 final size:27
Alignment explanation
Indices: 97778599--97778656 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
97778589 AAAATCTATC
* *
97778599 AAAATTATTAAAAATCATAAAGTTTTA
1 AAAAATATAAAAAATCATAAAGTTTTA
97778626 AAAAATATAAAAAAT-ATTAAA-TTTTA
1 AAAAATATAAAAAATCA-TAAAGTTTTA
*
97778652 TAAAA
1 AAAAA
97778657 CATTATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (27 bp):
AAAAATATAAAAAATCATAAAGTTTTA
Found at i:97778702 original size:18 final size:17
Alignment explanation
Indices: 97778679--97778740 Score: 62
Period size: 18 Copynumber: 3.8 Consensus size: 17
97778669 GTTATGAAAT
97778679 AATGATAAAAAAATTAGA
1 AATGATAAAAAAATTA-A
*
97778697 AATGAT-AGAAAATT--
1 AATGATAAAAAAATTAA
97778711 -AT-ATAAAAATAATTAA
1 AATGATAAAAA-AATTAA
97778727 AATGATAAAAAAAT
1 AATGATAAAAAAAT
97778741 CTATAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
12 2 0.06
13 5 0.14
14 4 0.11
17 12 0.33
18 13 0.36
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (17 bp):
AATGATAAAAAAATTAA
Found at i:97778758 original size:30 final size:30
Alignment explanation
Indices: 97778683--97778750 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
97778673 TGAAATAATG
* *
97778683 ATAAAAA-AATTAGAAATGATAGAAAATTAT
1 ATAAAAATAATTA-AAATGATAAAAAAATAT
*
97778713 ATAAAAATAATTAAAATGATAAAAAAATCT
1 ATAAAAATAATTAAAATGATAAAAAAATAT
97778743 ATAAAAAT
1 ATAAAAAT
97778751 TTATAAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 29 0.85
31 5 0.15
ACGTcount: A:0.66, C:0.01, G:0.06, T:0.26
Consensus pattern (30 bp):
ATAAAAATAATTAAAATGATAAAAAAATAT
Found at i:97778759 original size:10 final size:10
Alignment explanation
Indices: 97778735--97778814 Score: 58
Period size: 10 Copynumber: 8.2 Consensus size: 10
97778725 AAAATGATAA
*
97778735 AAAAATCTAT
1 AAAAATTTAT
97778745 AAAAATTTAT
1 AAAAATTTAT
*
97778755 AAAAAGTTAT
1 AAAAATTTAT
97778765 AAAAACTTT-T
1 AAAAA-TTTAT
** *
97778775 TGAAA-GTAT
1 AAAAATTTAT
* *
97778784 AAAAAGTTGT
1 AAAAATTTAT
97778794 AAAAATTT-T
1 AAAAATTTAT
*
97778803 AAAAATATAT
1 AAAAATTTAT
97778813 AA
1 AA
97778815 GGAAATTATA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
8 1 0.02
9 12 0.22
10 39 0.72
11 2 0.04
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (10 bp):
AAAAATTTAT
Found at i:97779122 original size:18 final size:19
Alignment explanation
Indices: 97779088--97779124 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
97779078 TAAAATACAA
97779088 GTTATAAAAAATTATTAAAT
1 GTTATAAAAAA-TATTAAAT
97779108 GTTATAAAAAA-ATTAAA
1 GTTATAAAAAATATTAAA
97779125 ATTATTGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (19 bp):
GTTATAAAAAATATTAAAT
Found at i:97780048 original size:41 final size:41
Alignment explanation
Indices: 97779986--97780069 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
97779976 CTAATATTGG
* * * *
97779986 ATATTAGCCACCAATGGTGGAATTCCCATGGTCATGTCTAC
1 ATATCAGCCACCAATGGTGGAACTCCCATGCTCATGTCCAC
97780027 ATATCAGCCACCAATGGTGGAACTCCCATGCTCATGTCCAC
1 ATATCAGCCACCAATGGTGGAACTCCCATGCTCATGTCCAC
97780068 AT
1 AT
97780070 TATTAATCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (41 bp):
ATATCAGCCACCAATGGTGGAACTCCCATGCTCATGTCCAC
Found at i:97780741 original size:6 final size:6
Alignment explanation
Indices: 97780727--97780760 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
97780717 TTTAAGTTAG
* *
97780727 TAAATT TAAAAT TAAAAT TAAAAT TAAAGT TAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
97780761 TTGTTATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (6 bp):
TAAAAT
Found at i:97793817 original size:47 final size:47
Alignment explanation
Indices: 97793763--97794188 Score: 563
Period size: 47 Copynumber: 9.1 Consensus size: 47
97793753 TTAGGATTTT
* *
97793763 ATGTGATGAATGTG-A-ATGTATATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGA--TAAGGCCGAATGGCCA
* * *
97793810 ATGTGATGAATGTGAACGTGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
97793857 ATGTGATGAAGGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
97793904 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
97793951 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
97793998 ATGTGATGAACGTGGAA-GTGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
97794045 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
97794092 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
97794139 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAGGCCGAATGGCCA
97794186 ATG
1 ATG
97794189 CGAAACGCGT
Statistics
Matches: 337, Mismatches: 37, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
46 3 0.01
47 317 0.94
48 7 0.02
49 10 0.03
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:97793885 original size:25 final size:24
Alignment explanation
Indices: 97793857--97794127 Score: 89
Period size: 24 Copynumber: 11.5 Consensus size: 24
97793847 CGAATGGCCA
97793857 ATGTGATGAAGGTGAACATGCACAT
1 ATGTGAT-AAGGTGAACATGCACAT
*
97793882 ATGTGATAAGGCCG-A-ATGGC-CA-
1 ATGTGATAAGG-TGAACAT-GCACAT
* *
97793904 ATGTGATGAATGTGAACATGTACAT
1 ATGTGAT-AAGGTGAACATGCACAT
*
97793929 ATGTGATAAGGCCG-A-ATGGC-CA-
1 ATGTGATAAGG-TGAACAT-GCACAT
* *
97793951 ATGTGATAAATGTGAACATGCATAT
1 ATGTGAT-AAGGTGAACATGCACAT
*
97793976 ATGTGATAAGG-CAGA-ATGGC-CA-
1 ATGTGATAAGGTGA-ACAT-GCACAT
* * * *
97793998 ATGTGATGAACGTGGAA-GTGTATAT
1 ATGTGAT-AAGGT-GAACATGCACAT
* *
97794023 GTGTGATAAGGCCG-A-ATGGC-CA-
1 ATGTGATAAGG-TGAACAT-GCACAT
*
97794045 ATGTGATGAATGTGAACATGCACAT
1 ATGTGAT-AAGGTGAACATGCACAT
*
97794070 ATGTGATAAGGCCG-A-ATGGC-CA-
1 ATGTGATAAGG-TGAACAT-GCACAT
* *
97794092 ATGTGATAAATGTGAACATGCATAT
1 ATGTGAT-AAGGTGAACATGCACAT
97794117 ATGTGATAAGG
1 ATGTGATAAGG
97794128 CAGAATGGCC
Statistics
Matches: 178, Mismatches: 33, Indels: 71
0.63 0.12 0.25
Matches are distributed among these distances:
22 38 0.21
23 46 0.26
24 49 0.28
25 45 0.25
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (24 bp):
ATGTGATAAGGTGAACATGCACAT
Found at i:97793939 original size:141 final size:141
Alignment explanation
Indices: 97793763--97794188 Score: 660
Period size: 141 Copynumber: 3.0 Consensus size: 141
97793753 TTAGGATTTT
* * * *
97793763 ATGTGATGAATGTG-A-ATGTATATATATGAGCTAAGGCCGAATGGCAAATGTGATGAATGTGAA
1 ATGTGATGAATGTGAACATGTACATATGTGA--TAAGGCCGAATGGCCAATGTGATAAATGTGAA
* * * * * * *
97793826 CGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAGGT-GAACATGCACATATGTGATA
64 CATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGATA
97793890 AGGCCGAATGGCCA
128 AGGCCGAATGGCCA
97793904 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
1 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
*
97793969 TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATGTGTGATAAGG
66 TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGATAAGG
97794034 CCGAATGGCCA
131 CCGAATGGCCA
*
97794045 ATGTGATGAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
1 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
* *
97794110 TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGTAAAG
66 TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGATAAGG
*
97794175 CCGAATGGCTA
131 CCGAATGGCCA
97794186 ATG
1 ATG
97794189 CGAAACGCGT
Statistics
Matches: 265, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 249 0.94
142 4 0.02
143 12 0.05
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
TGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGATAAGG
CCGAATGGCCA
Found at i:97794247 original size:46 final size:46
Alignment explanation
Indices: 97794162--97794252 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
97794152 GGAAGTGTAT
* *
97794162 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGCGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACACGTATGAGATGG
* * * *
97794208 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACACGTATGAGATG
97794253 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACACGTATGAGATGG
Found at i:97794259 original size:141 final size:139
Alignment explanation
Indices: 97793802--97794244 Score: 507
Period size: 141 Copynumber: 3.2 Consensus size: 139
97793792 GCTAAGGCCG
* * * *
97793802 AATGGCAAATGTGATG-AATGTGAACGTGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 AATGGCCAATGTGA-GAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGA
* * * * * * * *
97793866 AGGT-GAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTACATA
65 ACGTGGAA-GTGTATATATGTGATAAAGCCGAATGGCCAATGCGA-GAACGCGAACATG-ACATA
* *
97793930 TGTGATAAGGCCG
127 TGTGATAAAGCCA
*
97793943 AATGGCCAATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
1 AATGGCCAATGTGAGAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
* * * * *
97794008 CGTGGAAGTGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCACATATG
66 CGTGGAAGTGTATATATGTGATAAAGCCGAATGGCCAATGCGA-GAACGCGAACATG-ACATATG
* *
97794073 TGATAAGGCCG
129 TGATAAAGCCA
*
97794084 AATGGCCAATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
1 AATGGCCAATGTGAGAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
* * * *
97794149 CGTGGAAGTGTATATATGTGGTAAAGCCGAATGGCTAATGCGA-AACGCGTATGAGATG-GATAT
66 CGTGGAAGTGTATATATGTGATAAAGCCGAATGGCCAATGCGAGAACGCG-A--ACATGACATAT
*
97794212 GTGGTAAAGCCA
128 GTGATAAAGCCA
* *
97794224 AATGGCTAATGTGAGATATGT
1 AATGGCCAATGTGAGAAATGT
97794245 ATGAGATGTG
Statistics
Matches: 271, Mismatches: 26, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
139 4 0.01
140 32 0.12
141 228 0.84
142 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (139 bp):
AATGGCCAATGTGAGAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAA
CGTGGAAGTGTATATATGTGATAAAGCCGAATGGCCAATGCGAGAACGCGAACATGACATATGTG
ATAAAGCCA
Found at i:97795759 original size:13 final size:13
Alignment explanation
Indices: 97795741--97795776 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
97795731 CATCATACTT
97795741 TCTTTATTAAACC
1 TCTTTATTAAACC
97795754 TCTTTATTAAACC
1 TCTTTATTAAACC
*
97795767 TCTTTCTTAA
1 TCTTTATTAA
97795777 CTCTTAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.00, T:0.50
Consensus pattern (13 bp):
TCTTTATTAAACC
Found at i:97795920 original size:49 final size:47
Alignment explanation
Indices: 97795855--97796201 Score: 198
Period size: 47 Copynumber: 7.4 Consensus size: 47
97795845 TGTTGCCATA
* *
97795855 TCCCAAACATGGTCTTACGCTGGCTATCTCCATCAAGGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTATCT-CATCAAGGCCGATG-CATG
* * * *
97795904 TCCCAGACATGGTCTTACACTAGCTCTCGTGTAT-ATGTGCCGATGCATG
1 TCCCAGACATGGTCTTACACTGGCTATC-T-CATCAAG-GCCGATGCATG
* * ** * * *
97795953 TCCCAGACAT-GTCTCACACTAGC-AT-GAAACTTA-GCCGATGTATG
1 TCCCAGACATGGTCTTACACTGGCTATCTCATC-AAGGCCGATGCATG
* * *
97795997 TCCCAGATA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
1 TCCCAGACATGGTCTTACACTGGCTATC-TCATCAAGGCCGATGCATG
* * *
97796044 TCCTAGACAT-GTCTTACACTGGC-A-CTCATCTCTACGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTGGCTATCTCA--TCAAGGCCGATG-CATG
* * ** *
97796091 TCCCAGACATGGTCTTACACTGGTTATCTTAAT-GTGGCTGATGCATG
1 TCCCAGACATGGTCTTACACTGGCTATC-TCATCAAGGCCGATGCATG
* * * * * *
97796138 CCCCAAACAT-GTCTTACACTAGCCCT-TGTC-TTAATGCCGATGCCATG
1 TCCCAGACATGGTCTTACACT-G-GCTATCTCATCAAGGCCGATG-CATG
*
97796185 TCCCAAACATGGTCTTA
1 TCCCAGACATGGTCTTA
97796202 TATTGGCTCT
Statistics
Matches: 231, Mismatches: 45, Indels: 45
0.72 0.14 0.14
Matches are distributed among these distances:
44 33 0.14
45 4 0.02
46 29 0.13
47 73 0.32
48 37 0.16
49 42 0.18
50 11 0.05
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACACTGGCTATCTCATCAAGGCCGATGCATG
Found at i:97796058 original size:47 final size:47
Alignment explanation
Indices: 97795855--97796157 Score: 212
Period size: 47 Copynumber: 6.4 Consensus size: 47
97795845 TGTTGCCATA
* * *
97795855 TCCCAAACATGGTCTTACGCTGGCTATC-TCCATCAAGGCCGATGCCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCAT-CATCGAGGCCGATG-CATG
* * * *
97795904 TCCCAGACATGGTCTTACACTAGCTCTCGTGTAT--ATGTGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCAT-CATCGA-G-GCCGATGCATG
* * * * * *
97795953 TCCCAGACATGTCTCACACTAGC-ATGA--AACTTA-GCCGATGTATG
1 TCCCAGACATGTCTTACACTGGCTATCATCATC-GAGGCCGATGCATG
* *
97795997 TCCCAGATACGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
* * *
97796044 TCCTAGACATGTCTTACACTGGC-ACTCATC-TCTACGCCGATGCCATG
1 TCCCAGACATGTCTTACACTGGCTA-TCATCATCGAGGCCGATG-CATG
* * * * *
97796091 TCCCAGACATGGTCTTACACTGGTTATCTTAAT-GTGGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
* *
97796138 CCCCAAACATGTCTTACACT
1 TCCCAGACATGTCTTACACT
97796158 AGCCCTTGTC
Statistics
Matches: 204, Mismatches: 35, Indels: 33
0.75 0.13 0.12
Matches are distributed among these distances:
44 30 0.15
45 3 0.01
46 22 0.11
47 64 0.31
48 34 0.17
49 41 0.20
50 10 0.05
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATG
Found at i:97796137 original size:94 final size:92
Alignment explanation
Indices: 97795892--97796201 Score: 322
Period size: 94 Copynumber: 3.3 Consensus size: 92
97795882 CTCCATCAAG
* *
97795892 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATATGT-GCCGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-T-TA-ATGTGGCCGATGCATGTCC
* *
97795956 CAGACATGTCTCACACTAGCA-TGAAACTTA
63 CAGACATGTCTTACACTAGCACT-AATCTTA
* * * * * * *
97795986 GCCGATG-TATGTCCCAGATA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCCTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTAAT-GTGGCCGATGCATGTCCCA
* *
97796049 GACATGTCTTACACTGGCACTCATCTCTA
65 GACATGTCTTACACTAGCACTAATCT-TA
* * *
97796078 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTATCTTAATGTGGCTGATGCATGCCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTAATGTGGCCGATGCATGTCCCA
* * **
97796143 AACATGTCTTACACTAGCCCTTGTCTTAA
65 GACATGTCTTACACTAGCACTAATCTT-A
*
97796172 TGCCGATGCCATGTCCCAAACATGGTCTTA
1 -GCCGATGCCATGTCCCAGACATGGTCTTA
97796202 TATTGGCTCT
Statistics
Matches: 178, Mismatches: 30, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
89 2 0.01
90 2 0.01
91 35 0.20
92 18 0.10
93 19 0.11
94 83 0.47
95 19 0.11
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (92 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCTTAATGTGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACTAATCTTA
Found at i:97796152 original size:141 final size:140
Alignment explanation
Indices: 97795856--97796201 Score: 312
Period size: 141 Copynumber: 2.5 Consensus size: 140
97795846 GTTGCCATAT
*
97795856 CCCAAACATGGTCTTACGCTGGCTATCTCCATCAAGGCCGATGCCATGTCCCAGACATGGTCTTA
1 CCCAAACAT-GTCTTACACTGGCTATCTCCATCAAGGCCGATGCCATGTCCCAGACATGGTCTTA
* * * *
97795921 CACTAGCTCTCGTGTATATGTGCCGATGCATGTCCCAGACATGTCTCACACTAGCATGAAACTTA
65 CACTAGCACTCATCTATA-GCGCCGATGCATGTCCCAGACATGTCTCACACTAGCATGAAACTTA
* *
97795986 GCCGATGTATGT
129 GCCGATGCATGC
* * * * *
97795998 CCCAGATACGTCTTACACTGGCTATCAT-CATCGAGGCCGATG-CATGTCCTAGACAT-GTCTTA
1 CCCAAACATGTCTTACACTGGCTATC-TCCATCAAGGCCGATGCCATGTCCCAGACATGGTCTTA
* * * * * **
97796060 CACTGGCACTCATCTCTA-CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGTTATCTTAA-
65 CACTAGCACTCATCTATAGCGCCGATG-CATGTCCCAGACAT-GTCTCACACTAG-CAT-GAAAC
* *
97796123 TGTGGCTGATGCATGC
126 T-TAGCCGATGCATGC
* * * * *
97796139 CCCAAACATGTCTTACACTAGCCCT-TGT-C-TTAATGCCGATGCCATGTCCCAAACATGGTCTT
1 CCCAAACATGTCTTACACT-G-GCTATCTCCATCAAGGCCGATGCCATGTCCCAGACATGGTCTT
97796201 A
64 A
97796202 TATTGGCTCT
Statistics
Matches: 163, Mismatches: 31, Indels: 20
0.76 0.14 0.09
Matches are distributed among these distances:
137 7 0.04
138 14 0.09
139 29 0.18
140 25 0.15
141 71 0.44
142 15 0.09
143 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (140 bp):
CCCAAACATGTCTTACACTGGCTATCTCCATCAAGGCCGATGCCATGTCCCAGACATGGTCTTAC
ACTAGCACTCATCTATAGCGCCGATGCATGTCCCAGACATGTCTCACACTAGCATGAAACTTAGC
CGATGCATGC
Found at i:97798052 original size:19 final size:20
Alignment explanation
Indices: 97798015--97798057 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
97798005 AGTAGGGAAC
97798015 ATACATATATAAAACATATA
1 ATACATATATAAAACATATA
97798035 ATAC-TATATTAAAA-ATAT-
1 ATACATATA-TAAAACATATA
97798053 ATACA
1 ATACA
97798058 ATACATATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.19
19 8 0.38
20 9 0.43
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (20 bp):
ATACATATATAAAACATATA
Found at i:97798231 original size:25 final size:23
Alignment explanation
Indices: 97798203--97798309 Score: 83
Period size: 25 Copynumber: 4.4 Consensus size: 23
97798193 TATGGCGTTA
97798203 AAAATACATATATAATATAGTTATT
1 AAAATA-ATATATAATATAG-TATT
* *
97798228 AAAATATATATATAAGATAATATGT
1 AAAATA-ATATATAATATAGTAT-T
*
97798253 AAAA-AAAATATAATATAGTATT
1 AAAATAATATATAATATAGTATT
* * *
97798275 CAAAATATATACATGATATA-TATA
1 -AAAATA-ATATATAATATAGTATT
97798299 AAATATAATAT
1 AAA-ATAATAT
97798310 TAAAAATATA
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
22 1 0.02
23 23 0.35
24 11 0.17
25 31 0.47
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.36
Consensus pattern (23 bp):
AAAATAATATATAATATAGTATT
Found at i:97798236 original size:23 final size:23
Alignment explanation
Indices: 97798210--97798285 Score: 68
Period size: 23 Copynumber: 3.2 Consensus size: 23
97798200 TTAAAAATAC
97798210 ATATATAATATAGTTATTAAAAT
1 ATATATAATATAGTTATTAAAAT
*
97798233 ATATAT-ATA-AGATAATATGTAAAAA
1 ATATATAATATAG-T--TAT-TAAAAT
*
97798258 AAATATAATATAG-TATTCAAAAT
1 ATATATAATATAGTTATT-AAAAT
97798281 ATATA
1 ATATA
97798286 CATGATATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
21 2 0.05
22 5 0.12
23 17 0.40
24 3 0.07
25 10 0.24
26 3 0.07
27 2 0.05
ACGTcount: A:0.57, C:0.01, G:0.05, T:0.37
Consensus pattern (23 bp):
ATATATAATATAGTTATTAAAAT
Found at i:97798320 original size:27 final size:27
Alignment explanation
Indices: 97798200--97798374 Score: 94
Period size: 29 Copynumber: 6.3 Consensus size: 27
97798190 TAATATGGCG
*
97798200 TTAAAAATACATATATAATATAGT--TA
1 TTAAAAATATATATATAATATA-TAATA
*
97798226 TT-AAAATATATATAT-A-AGATAATA
1 TTAAAAATATATATATAATATATAATA
* * *
97798250 TGTAAAAAAAATATAATATAGTAT-TCAAAA
1 T-T-AAAAATATAT-ATATAATATAT-AATA
* * *
97798280 TATATACATGATATATATAAAATATAATA
1 T-TAAAAAT-ATATATATAATATATAATA
97798309 TTAAAAATATATATACGTAATATAT-ATA
1 TTAAAAATATATATA--TAATATATAATA
* * *
97798337 TAAAAAAATGTATACATAATATATACATA
1 T-TAAAAATATATATATAATATATA-ATA
*
97798366 TTAGAAATA
1 TTAAAAATA
97798375 ATAATGTTAA
Statistics
Matches: 111, Mismatches: 22, Indels: 30
0.68 0.13 0.18
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 4 0.04
25 13 0.12
26 2 0.02
27 23 0.21
28 18 0.16
29 37 0.33
30 11 0.10
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (27 bp):
TTAAAAATATATATATAATATATAATA
Found at i:97798322 original size:29 final size:29
Alignment explanation
Indices: 97798290--97798374 Score: 93
Period size: 27 Copynumber: 3.0 Consensus size: 29
97798280 TATATACATG
* *
97798290 ATATATATAAAATATAATATTAAAAATAT
1 ATATACATAATATATAATATTAAAAATAT
* *
97798319 ATATACGTAATATAT-ATA-TAAAAAAAT
1 ATATACATAATATATAATATTAAAAATAT
* *
97798346 GTATACATAATATATACATATTAGAAATA
1 ATATACATAATATATA-ATATTAAAAATA
97798375 ATAATGTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
27 21 0.47
28 3 0.07
29 15 0.33
30 6 0.13
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (29 bp):
ATATACATAATATATAATATTAAAAATAT
Found at i:97798332 original size:36 final size:36
Alignment explanation
Indices: 97798264--97798336 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
97798254 AAAAAAATAT
* * *
97798264 AATATAGTATTCAAAATATATACATGATATATATAA
1 AATATAATATTAAAAATATATACACGATATATATAA
*
97798300 AATATAATATTAAAAATATATATACGTAATATATATA
1 AATATAATATTAAAAATATATACACG--ATATATATA
97798337 TAAAAAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 22 0.71
38 9 0.29
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (36 bp):
AATATAATATTAAAAATATATACACGATATATATAA
Found at i:97798437 original size:21 final size:20
Alignment explanation
Indices: 97798411--97798451 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
97798401 TATTACATAA
* *
97798411 ATATATATTAAAGATATATAC
1 ATATATAATAAA-ACATATAC
97798432 ATATATAATAAAACATATAC
1 ATATATAATAAAACATATAC
97798452 CAATAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
ATATATAATAAAACATATAC
Found at i:97798518 original size:23 final size:23
Alignment explanation
Indices: 97798456--97798534 Score: 63
Period size: 23 Copynumber: 3.3 Consensus size: 23
97798446 ATATACCAAT
*
97798456 AATA-ATAACAAGGATAACATAAAA
1 AATATATAACAA--ATAATATAAAA
** *
97798480 ATATATATATGAAATAGTATAAAA
1 A-ATATATAACAAATAATATAAAA
*
97798504 AATATATAACTAATAATATTAAAA
1 AATATATAACAAATAATA-TAAAA
97798528 AA-ATATA
1 AATATATA
97798535 CATGATATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 7
0.75 0.14 0.12
Matches are distributed among these distances:
23 18 0.41
24 18 0.41
25 3 0.07
26 5 0.11
ACGTcount: A:0.63, C:0.04, G:0.05, T:0.28
Consensus pattern (23 bp):
AATATATAACAAATAATATAAAA
Found at i:97798549 original size:23 final size:22
Alignment explanation
Indices: 97798474--97798550 Score: 66
Period size: 24 Copynumber: 3.3 Consensus size: 22
97798464 CAAGGATAAC
* *
97798474 ATAAAAATATATATATGAAATAGT
1 ATAAAAAAATATA-ATGATATA-T
*
97798498 ATAAAAAATATATAACTAATA-AT
1 ATAAAAAA-ATATAA-TGATATAT
97798521 ATTAAAAAAATATACATGATATAT
1 A-TAAAAAAATATA-ATGATATAT
97798545 ATAAAA
1 ATAAAA
97798551 GCATATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
23 16 0.36
24 20 0.45
25 8 0.18
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (22 bp):
ATAAAAAAATATAATGATATAT
Found at i:97798648 original size:25 final size:23
Alignment explanation
Indices: 97798606--97798664 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
97798596 AAATAATTAT
* *
97798606 TAATAATATT--ACATAAATATA
1 TAATAATATTAAAGATAAATACA
97798627 TACATATATATTAAAGATAAATACA
1 TA-ATA-ATATTAAAGATAAATACA
97798652 TAATAATATTAAA
1 TAATAATATTAAA
97798665 AGTATGTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.06
22 3 0.09
23 13 0.41
24 3 0.09
25 11 0.34
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (23 bp):
TAATAATATTAAAGATAAATACA
Found at i:97798689 original size:13 final size:13
Alignment explanation
Indices: 97798606--97798716 Score: 56
Period size: 13 Copynumber: 9.5 Consensus size: 13
97798596 AAATAATTAT
97798606 TAATA-ATATTACA
1 TAATATATA-TACA
97798619 TAA-ATATATACA
1 TAATATATATACA
97798631 T-ATATAT-TA-A
1 TAATATATATACA
97798641 -AGATA-A-ATACA
1 TA-ATATATATACA
97798652 TAATA-ATATTA-A
1 TAATATATA-TACA
* *
97798664 -AA-GTATGTACA
1 TAATATATATACA
97798675 TAATATATATACA
1 TAATATATATACA
97798688 TAATATAT-T--A
1 TAATATATATACA
*
97798698 -AAGATATATACA
1 TAATATATATACA
97798710 TAATATA
1 TAATATA
97798717 ATAAAACATA
Statistics
Matches: 75, Mismatches: 6, Indels: 34
0.65 0.05 0.30
Matches are distributed among these distances:
9 6 0.08
10 8 0.11
11 16 0.21
12 17 0.23
13 28 0.37
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (13 bp):
TAATATATATACA
Found at i:97798703 original size:58 final size:54
Alignment explanation
Indices: 97798597--97798722 Score: 173
Period size: 58 Copynumber: 2.2 Consensus size: 54
97798587 AATGTTAAAA
97798597 AATAATTATTAATAATATTACATAAATATATACATATATATTAAAGATAAATACAT
1 AATAA-TATTAA-AATATTACATAAATATATACATATATATTAAAGATAAATACAT
*
97798653 AATAATATTAAAAGTATGTACATAATATATATACATAATATATTAAAGATATATACAT
1 AATAATATTAAAA-TAT-TACATAA-ATATATACAT-ATATATTAAAGATAAATACAT
*
97798711 AAT-ATAATAAAA
1 AATAATATTAAAA
97798723 CATATGAATA
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
54 2 0.03
55 9 0.14
56 12 0.19
57 18 0.28
58 23 0.36
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (54 bp):
AATAATATTAAAATATTACATAAATATATACATATATATTAAAGATAAATACAT
Found at i:97798704 original size:24 final size:22
Alignment explanation
Indices: 97798679--97798802 Score: 100
Period size: 22 Copynumber: 5.7 Consensus size: 22
97798669 TGTACATAAT
*
97798679 ATATATACATAATATATTAAAG
1 ATATATACATAATATATTAAAA
*
97798701 ATATATACATAATATAATAAAA
1 ATATATACATAATATATTAAAA
* * *
97798723 CATAT-GA-ATAATAGGATAAAAAA
1 -ATATATACATAATA-TAT-TAAAA
97798746 ATATATACATAATATA-TAAAA
1 ATATATACATAATATATTAAAA
*
97798767 A-A-AT--ATAATATTTTAAAAA
1 ATATATACATAATATATT-AAAA
97798786 ATAATATACATAATATA
1 AT-ATATACATAATATA
97798803 AGAGTATTTA
Statistics
Matches: 79, Mismatches: 11, Indels: 22
0.71 0.10 0.20
Matches are distributed among these distances:
17 7 0.09
18 1 0.01
19 7 0.09
20 1 0.01
21 12 0.15
22 28 0.35
23 10 0.13
24 13 0.16
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.32
Consensus pattern (22 bp):
ATATATACATAATATATTAAAA
Found at i:97798710 original size:35 final size:36
Alignment explanation
Indices: 97798647--97798716 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 36
97798637 TTAAAGATAA
*
97798647 ATACATAATAATATTAAAAGTATGTACATAATATAT
1 ATACATAATAATATTAAAAGTATATACATAATATAT
97798683 ATACATAAT-ATATT-AAAGATATATACATAATATA
1 ATACATAATAATATTAAAAG-TATATACATAATATA
97798717 ATAAAACATA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 4 0.12
35 19 0.59
36 9 0.28
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (36 bp):
ATACATAATAATATTAAAAGTATATACATAATATAT
Found at i:97798752 original size:58 final size:59
Alignment explanation
Indices: 97798630--97798752 Score: 137
Period size: 58 Copynumber: 2.1 Consensus size: 59
97798620 AAATATATAC
* * * * * *
97798630 ATATATATTAAAGATAAATACATAATAATATTAAAAGTATGTACATAATATATATACAT
1 ATATATATTAAAGATAAATACATAATAATAATAAAAATATGTACATAATAGATAAAAAA
*
97798689 A-ATATATTAAAGATATATACATAAT-ATAATAAAACATATG-A-ATAATAGGATAAAAAA
1 ATATATATTAAAGATAAATACATAATAATAATAAAA-ATATGTACATAATA-GATAAAAAA
97798746 ATATATA
1 ATATATA
97798753 CATAATATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
56 6 0.11
57 15 0.28
58 32 0.59
59 1 0.02
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.33
Consensus pattern (59 bp):
ATATATATTAAAGATAAATACATAATAATAATAAAAATATGTACATAATAGATAAAAAA
Found at i:97798756 original size:45 final size:41
Alignment explanation
Indices: 97798701--97798803 Score: 118
Period size: 41 Copynumber: 2.4 Consensus size: 41
97798691 TATATTAAAG
*
97798701 ATATATACATAATATAATAAAACATATGAATAATAGGATAAAAAA
1 ATATATACATAATATAATAAAA-AAAT--ATAATA-GATAAAAAA
** *
97798746 ATATATACATAATAT-ATAAAAAAATATAATATTTTAAAAA
1 ATATATACATAATATAATAAAAAAATATAATAGATAAAAAA
97798786 ATAATATACATAATATAA
1 AT-ATATACATAATATAA
97798804 GAGTATTTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
40 8 0.15
41 19 0.37
42 1 0.02
43 3 0.06
44 6 0.12
45 15 0.29
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (41 bp):
ATATATACATAATATAATAAAAAAATATAATAGATAAAAAA
Found at i:97798776 original size:17 final size:17
Alignment explanation
Indices: 97798754--97798788 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97798744 AAATATATAC
97798754 ATAATATATAAAAAAAT
1 ATAATATATAAAAAAAT
* *
97798771 ATAATATTTTAAAAAAT
1 ATAATATATAAAAAAAT
97798788 A
1 A
97798789 ATATACATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAATATATAAAAAAAT
Found at i:97798981 original size:12 final size:12
Alignment explanation
Indices: 97798966--97799092 Score: 63
Period size: 12 Copynumber: 10.7 Consensus size: 12
97798956 TAATAGTGAA
97798966 AATAATAAATAT
1 AATAATAAATAT
97798978 AATAATAAATAT
1 AATAATAAATAT
*
97798990 AATAATAGAA-AC
1 AATAATA-AATAT
* **
97799002 GATAAT-TCTAT
1 AATAATAAATAT
97799013 -ATAA-AAAGTAT
1 AATAATAAA-TAT
*
97799024 -ATATATACATAT
1 AATA-ATAAATAT
97799036 -ATAATAAA-AT
1 AATAATAAATAT
*
97799046 ATATACT-AATATT
1 A-ATAATAAATA-T
*
97799059 AATAATGAATAT
1 AATAATAAATAT
*
97799071 AATATTATAATACT
1 AATAATA-AATA-T
97799085 AATAATAA
1 AATAATAA
97799093 CAATATGAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 25
0.69 0.11 0.20
Matches are distributed among these distances:
10 6 0.07
11 13 0.15
12 47 0.53
13 15 0.17
14 7 0.08
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:97798991 original size:21 final size:21
Alignment explanation
Indices: 97798933--97798994 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
97798923 TGTATATACG
* * *
97798933 TATAATAAT-GATAAAAAAAA
1 TATAATAATAAATATAATAAA
*
97798953 TAATAATAGTGAAA-ATAATAAA
1 T-ATAATAAT-AAATATAATAAA
97798975 TATAATAATAAATATAATAA
1 TATAATAATAAATATAATAA
97798995 TAGAAACGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 4 0.12
21 21 0.64
22 7 0.21
23 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
TATAATAATAAATATAATAAA
Found at i:97799050 original size:26 final size:25
Alignment explanation
Indices: 97799013--97799098 Score: 65
Period size: 28 Copynumber: 3.4 Consensus size: 25
97799003 ATAATTCTAT
97799013 ATAAAA-AGTATATATATACATATATA
1 ATAAAATA-TATATATATACATA-ATA
97799039 ATAAAATATATACTAATATTA-ATAATGA
1 ATAAAATATATA-T-ATA-TACATAAT-A
*
97799067 ATATAATAT-TATA-ATAC-TAATA
1 ATAAAATATATATATATACATAATA
97799089 ATAACAATAT
1 ATAA-AATAT
97799099 GAAATTAAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
22 4 0.08
23 11 0.22
24 1 0.02
25 1 0.02
26 11 0.22
27 6 0.12
28 15 0.29
29 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATAAAATATATATATATACATAATA
Found at i:97799057 original size:20 final size:21
Alignment explanation
Indices: 97799024--97799063 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
97799014 TAAAAAGTAT
97799024 ATATATACATATA-TAATAAA
1 ATATATACATATATTAATAAA
97799044 ATATATAC-TAATATTAATAA
1 ATATATACAT-ATATTAATAA
97799064 TGAATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATACATATATTAATAAA
Found at i:97799203 original size:9 final size:9
Alignment explanation
Indices: 97799184--97799240 Score: 62
Period size: 9 Copynumber: 6.2 Consensus size: 9
97799174 TATATAAAAA
*
97799184 AATAATAAT
1 AATATTAAT
*
97799193 AATATTGAT
1 AATATTAAT
97799202 AATATTAAT
1 AATATTAAT
97799211 AATATTAGA-
1 AATATTA-AT
*
97799220 AATAATAAT
1 AATATTAAT
97799229 AATATTTAAT
1 AATA-TTAAT
97799239 AA
1 AA
97799241 AGAAACAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
8 1 0.03
9 32 0.80
10 7 0.17
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (9 bp):
AATATTAAT
Found at i:97799205 original size:18 final size:18
Alignment explanation
Indices: 97799183--97799234 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
97799173 ATATATAAAA
97799183 AAATAATAATAATATT-G
1 AAATAATAATAATATTAG
*
97799200 ATAATATTAATAATATTAG
1 A-AATAATAATAATATTAG
97799219 AAATAATAATAATATT
1 AAATAATAATAATATT
97799235 TAATAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 1 0.03
18 28 0.90
19 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
AAATAATAATAATATTAG
Found at i:97815380 original size:20 final size:21
Alignment explanation
Indices: 97815350--97815388 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
97815340 TATTAGTTAA
97815350 ATTTATTTTAAGTAATTTATG
1 ATTTATTTTAAGTAATTTATG
*
97815371 ATTT-TTTTAATTAATTTA
1 ATTTATTTTAAGTAATTTA
97815389 GGATGTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTTATTTTAAGTAATTTATG
Found at i:97817397 original size:31 final size:30
Alignment explanation
Indices: 97817356--97817423 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 30
97817346 TATTCATTTA
*
97817356 ATTAAAAATTTATAATTT-AGTCATTAAATT
1 ATTAAAAATTT-TAATTTAAATCATTAAATT
* *
97817386 ATTCAAAAATTTTTATTTAAATTATTAAATT
1 ATT-AAAAATTTTAATTTAAATCATTAAATT
97817417 ATTAAAA
1 ATTAAAA
97817424 TTAATGTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (30 bp):
ATTAAAAATTTTAATTTAAATCATTAAATT
Found at i:97834219 original size:25 final size:25
Alignment explanation
Indices: 97834194--97834243 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
97834184 TTACATTTTA
97834194 AAATTC-AATAATAATAAAAAAGTT
1 AAATTCTAATAATAATAAAAAAGTT
97834218 AAATTCGTTAAATAATAATAAAAAAG
1 AAATTC--T-AATAATAATAAAAAAG
97834244 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
28 16 0.73
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (25 bp):
AAATTCTAATAATAATAAAAAAGTT
Found at i:97840585 original size:31 final size:31
Alignment explanation
Indices: 97840547--97840658 Score: 89
Period size: 31 Copynumber: 3.3 Consensus size: 31
97840537 AATGTTACAC
97840547 TTTAGTCACTTATGTTAACGTGTTGTAACAT
1 TTTAGTCACTTATGTTAACGTGTTGTAACAT
* * * * *
97840578 TTTAGTCACTGATTAGTTACTTATGTTTGAAATGTTACAC
1 TTTAGTCACTTA-T-GTTA---ACG--TG--TTGTAACAT
*
97840618 TTTAGTCACTTACGTTAACGTGTTGTAACAT
1 TTTAGTCACTTATGTTAACGTGTTGTAACAT
97840649 TTTAGTCACT
1 TTTAGTCACT
97840659 GAGCTGTTAA
Statistics
Matches: 61, Mismatches: 11, Indels: 18
0.68 0.12 0.20
Matches are distributed among these distances:
31 27 0.44
32 1 0.02
33 6 0.10
35 2 0.03
36 2 0.03
38 6 0.10
40 17 0.28
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (31 bp):
TTTAGTCACTTATGTTAACGTGTTGTAACAT
Found at i:97840635 original size:71 final size:71
Alignment explanation
Indices: 97840519--97840660 Score: 275
Period size: 71 Copynumber: 2.0 Consensus size: 71
97840509 ATGTTATATT
*
97840519 TTAGTTACTTATGTTTGAAATGTTACACTTTAGTCACTTATGTTAACGTGTTGTAACATTTTAGT
1 TTAGTTACTTATGTTTGAAATGTTACACTTTAGTCACTTACGTTAACGTGTTGTAACATTTTAGT
97840584 CACTGA
66 CACTGA
97840590 TTAGTTACTTATGTTTGAAATGTTACACTTTAGTCACTTACGTTAACGTGTTGTAACATTTTAGT
1 TTAGTTACTTATGTTTGAAATGTTACACTTTAGTCACTTACGTTAACGTGTTGTAACATTTTAGT
97840655 CACTGA
66 CACTGA
97840661 GCTGTTAATA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.44
Consensus pattern (71 bp):
TTAGTTACTTATGTTTGAAATGTTACACTTTAGTCACTTACGTTAACGTGTTGTAACATTTTAGT
CACTGA
Found at i:97856685 original size:16 final size:16
Alignment explanation
Indices: 97856664--97856696 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97856654 TACCATCCCA
97856664 TCCTTAAATTTAGAGG
1 TCCTTAAATTTAGAGG
97856680 TCCTTAAATTTAGAGG
1 TCCTTAAATTTAGAGG
97856696 T
1 T
97856697 ATATGACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (16 bp):
TCCTTAAATTTAGAGG
Found at i:97862909 original size:31 final size:32
Alignment explanation
Indices: 97862871--97862945 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 32
97862861 ATTTTCTTGG
*
97862871 TCTAATTTGGTATCC-AAACTTGAC-TTTTTTT
1 TCTAATTTGGTA-CCTAAACTTGACACTTTTTT
*
97862902 TCTAATTTGATACCTAAACTTGACACTTTTTT
1 TCTAATTTGGTACCTAAACTTGACACTTTTTT
*
97862934 T-TAAGTTGGTAC
1 TCTAATTTGGTAC
97862946 TTAATCTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 2 0.05
31 29 0.76
32 7 0.18
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (32 bp):
TCTAATTTGGTACCTAAACTTGACACTTTTTT
Found at i:97863520 original size:58 final size:58
Alignment explanation
Indices: 97863411--97863524 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
97863401 ATCAAGTTTA
* ** * * *
97863411 GGCCCAAAAAATTTAGGTACCAAATTAGAAAAAAATGTCAAGTTTACATACCAAATTG
1 GGCCAAAAAAATTTAAATACCAAATTAGAAAAAAATATCAAATTTAAATACCAAATTG
*
97863469 GGCCAAAAAAATTTAAATACCAAATTTA-AAAAATATATCAAATTTAAATACCAAAT
1 GGCCAAAAAAATTTAAATACCAAA-TTAGAAAAAAATATCAAATTTAAATACCAAAT
97863525 ATTATAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
58 45 0.94
59 3 0.06
ACGTcount: A:0.52, C:0.14, G:0.09, T:0.25
Consensus pattern (58 bp):
GGCCAAAAAAATTTAAATACCAAATTAGAAAAAAATATCAAATTTAAATACCAAATTG
Found at i:97864454 original size:8 final size:8
Alignment explanation
Indices: 97864443--97864470 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
97864433 TATTTTTAAT
97864443 AAAAATTA
1 AAAAATTA
97864451 AAAAATTA
1 AAAAATTA
97864459 AAAAATTA
1 AAAAATTA
97864467 AAAA
1 AAAA
97864471 CTCAAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATTA
Found at i:97864454 original size:26 final size:25
Alignment explanation
Indices: 97864392--97864453 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 25
97864382 TAAAACAAAA
97864392 AAAAATT-AAATTTAATATATTTAT
1 AAAAATTAAAATTTAATATATTTAT
*
97864416 AAAAATTCCAAAATTT-ATATTTTTAAT
1 AAAAATT--AAAATTTAATATATTT-AT
97864443 AAAAATTAAAA
1 AAAAATTAAAA
97864454 AATTAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
24 7 0.21
25 4 0.12
26 7 0.21
27 15 0.45
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (25 bp):
AAAAATTAAAATTTAATATATTTAT
Found at i:97864455 original size:27 final size:27
Alignment explanation
Indices: 97864399--97864457 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
97864389 AAAAAAAATT
**
97864399 AAATTTAATATATTTATAAAAATTCCA
1 AAATTTAATATATTTATAAAAATTAAA
*
97864426 AAATTT-ATATTTTTAATAAAAATTAAA
1 AAATTTAATATATTT-ATAAAAATTAAA
97864453 AAATT
1 AAATT
97864458 AAAAAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42
Consensus pattern (27 bp):
AAATTTAATATATTTATAAAAATTAAA
Found at i:97869884 original size:30 final size:28
Alignment explanation
Indices: 97869844--97869908 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 28
97869834 TCGTTACAAG
*
97869844 TTAATTTATTTTTCTATTATTTTATAAGCGT
1 TTAA-TTATTTTTCTATTATTTT-TAA-AGT
*
97869875 TTAATTATTTTTTTATTATTTTTAAAGT
1 TTAATTATTTTTCTATTATTTTTAAAGT
97869903 TTAATT
1 TTAATT
97869909 GATTGTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 8 0.25
29 3 0.09
30 17 0.53
31 4 0.12
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (28 bp):
TTAATTATTTTTCTATTATTTTTAAAGT
Found at i:97870998 original size:7 final size:7
Alignment explanation
Indices: 97870986--97871019 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
97870976 AATTTTCTTT
97870986 GAATTTG
1 GAATTTG
*
97870993 GAATTTA
1 GAATTTG
*
97871000 GATTTTG
1 GAATTTG
97871007 GAATTTG
1 GAATTTG
97871014 GAATTT
1 GAATTT
97871020 TGTGAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (7 bp):
GAATTTG
Found at i:97871008 original size:14 final size:15
Alignment explanation
Indices: 97870989--97871026 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
97870979 TTTCTTTGAA
97870989 TTTGGAATTTAG-AT
1 TTTGGAATTTAGAAT
*
97871003 TTTGGAATTTGGAAT
1 TTTGGAATTTAGAAT
97871018 TTTGTGAAT
1 TTTG-GAAT
97871027 ATTTTCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.52
15 6 0.29
16 4 0.19
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (15 bp):
TTTGGAATTTAGAAT
Found at i:97871110 original size:13 final size:13
Alignment explanation
Indices: 97871082--97871123 Score: 52
Period size: 11 Copynumber: 3.3 Consensus size: 13
97871072 TAATATTTGT
97871082 TTTTATTTTGTTAA
1 TTTTATTTT-TTAA
97871096 TTTTATTTTTTAA
1 TTTTATTTTTTAA
*
97871109 --TTAATTTTTAA
1 TTTTATTTTTTAA
97871120 TTTT
1 TTTT
97871124 TAAAAAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.40
13 6 0.24
14 9 0.36
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:97871114 original size:17 final size:18
Alignment explanation
Indices: 97871092--97871126 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
97871082 TTTTATTTTG
*
97871092 TTAA-TTTTATTTTTTAA
1 TTAATTTTTAATTTTTAA
97871109 TTAATTTTTAATTTTTAA
1 TTAATTTTTAATTTTTAA
97871127 AAAGGGTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTAATTTTTAATTTTTAA
Found at i:97871296 original size:20 final size:19
Alignment explanation
Indices: 97871265--97871307 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
97871255 ACTTTTATGA
*
97871265 ATTTTTTTATTTTTAAA-T
1 ATTTTTTTATTTGTAAATT
97871283 ATTTTTTATAATTTGTAAATT
1 ATTTTTT-T-ATTTGTAAATT
97871304 ATTT
1 ATTT
97871308 GTTAATGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 8 0.38
21 5 0.24
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTTTTTATTTGTAAATT
Found at i:97872373 original size:12 final size:11
Alignment explanation
Indices: 97872354--97872389 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
97872344 ATTAAATAAT
97872354 AAAGAAAGAAA
1 AAAGAAAGAAA
97872365 AAGAGAAAG-AA
1 AA-AGAAAGAAA
97872376 AAAGAAAGAAA
1 AAAGAAAGAAA
97872387 AAA
1 AAA
97872390 TAGGATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 6 0.26
11 11 0.48
12 6 0.26
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:97872381 original size:10 final size:10
Alignment explanation
Indices: 97872354--97872388 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
97872344 ATTAAATAAT
97872354 AAAGAAAGAAA
1 AAAGAAAG-AA
97872365 AAGAGAAAGAA
1 AA-AGAAAGAA
97872376 AAAGAAAGAA
1 AAAGAAAGAA
97872386 AAA
1 AAA
97872389 ATAGGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 11 0.48
11 6 0.26
12 6 0.26
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:97873006 original size:39 final size:40
Alignment explanation
Indices: 97872963--97873055 Score: 125
Period size: 39 Copynumber: 2.3 Consensus size: 40
97872953 AAAAATTATA
* *
97872963 TTTAATAAAATAAAACATTTGTTATATTTAT-TTGTGTTT
1 TTTAATAAAATAAAACATTTATTATATTTATATAGTGTTT
* *
97873002 TTTAATATAACAAAACATTTATTATATTTATGATAGTGTTT
1 TTTAATAAAATAAAACATTTATTATATTTAT-ATAGTGTTT
97873043 TTTAATATAAATA
1 TTTAATA-AAATA
97873056 CTTTTTAATG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 28 0.62
41 14 0.31
42 3 0.07
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (40 bp):
TTTAATAAAATAAAACATTTATTATATTTATATAGTGTTT
Found at i:97873135 original size:16 final size:18
Alignment explanation
Indices: 97873108--97873142 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
97873098 CATTTAGTGT
97873108 ATTATATTTTAAAA-AAA
1 ATTATATTTTAAAATAAA
97873125 ATTAT-TTTTAAAATAAA
1 ATTATATTTTAAAATAAA
97873142 A
1 A
97873143 AAATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTATATTTTAAAATAAA
Found at i:97874153 original size:36 final size:38
Alignment explanation
Indices: 97874095--97874171 Score: 97
Period size: 36 Copynumber: 2.1 Consensus size: 38
97874085 TGTCATTTTA
*
97874095 TAAAAATATAAAAATATAAAAAAAA-A-TTAAAACTTT
1 TAAAAATATAAAAATATAAAAAAAATATTTAAAAATTT
* *
97874131 TAAAAATAT-AAAATGTTCAAAAAAATATTTAAAAATTT
1 TAAAAATATAAAAAT-ATAAAAAAAATATTTAAAAATTT
97874169 TAA
1 TAA
97874172 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 5 0.14
36 17 0.49
37 1 0.03
38 12 0.34
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (38 bp):
TAAAAATATAAAAATATAAAAAAAATATTTAAAAATTT
Found at i:97874560 original size:10 final size:9
Alignment explanation
Indices: 97874540--97874598 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
97874530 CATTGTTAAG
97874540 TTAA-ATTT
1 TTAATATTT
97874548 TTAATATTTT
1 TTAATA-TTT
97874558 TTAATATTT
1 TTAATATTT
*
97874567 AT-ATATTT
1 TTAATATTT
97874575 TTAATATTTT
1 TTAATA-TTT
*
97874585 TTGA-ATTT
1 TTAATATTT
97874593 TTAATA
1 TTAATA
97874599 AATTTAATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
8 17 0.40
9 10 0.24
10 15 0.36
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (9 bp):
TTAATATTT
Found at i:97874575 original size:17 final size:16
Alignment explanation
Indices: 97874551--97874583 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
97874541 TAAATTTTTA
97874551 ATATTTTTTAATATTT
1 ATATTTTTTAATATTT
97874567 ATATATTTTTAATATTT
1 ATAT-TTTTTAATATTT
97874584 TTTGAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATATTTTTTAATATTT
Found at i:97874604 original size:27 final size:27
Alignment explanation
Indices: 97874547--97874606 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
97874537 AAGTTAAATT
**
97874547 TTTAATATTTTTTAATATTTATATATT
1 TTTAATATTTTTTAATATTTATATAAA
*
97874574 TTTAATATTTTTTGAATTTTTA-ATAAA
1 TTTAATATTTTTT-AATATTTATATAAA
97874601 TTTAAT
1 TTTAAT
97874607 TCAAATTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (27 bp):
TTTAATATTTTTTAATATTTATATAAA
Found at i:97884236 original size:21 final size:20
Alignment explanation
Indices: 97884195--97884236 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
97884185 CTTATTATTT
*
97884195 AATTCTTTTTATTTTTATAA
1 AATTCTTTTTATTCTTATAA
97884215 AATTGCTTTTTAATTCTT-TAA
1 AATT-CTTTTT-ATTCTTATAA
97884236 A
1 A
97884237 GTTTTTAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.31, C:0.07, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTCTTTTTATTCTTATAA
Found at i:97885932 original size:18 final size:20
Alignment explanation
Indices: 97885905--97885953 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
97885895 TAATTAATAA
* *
97885905 TAAAATAATAAAATATCTCAT
1 TAAAATAAT-ATATATCTAAT
97885926 TAAAATAATATATATCTAAT
1 TAAAATAATATATATCTAAT
97885946 T-AAATAAT
1 TAAAATAAT
97885954 CATAAAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATAATATATATCTAAT
Found at i:97885942 original size:20 final size:21
Alignment explanation
Indices: 97885905--97885964 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
97885895 TAATTAATAA
*
97885905 TAAAATAATAAAATATCTCAT
1 TAAAATAATAAAATATCTAAT
*
97885926 TAAAATAAT-ATATATCTAAT
1 TAAAATAATAAAATATCTAAT
*
97885946 TAAATAATCATAAAATATC
1 T-AA-AATAATAAAATATC
97885965 ATCAACATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 10 0.31
21 11 0.34
22 5 0.16
23 6 0.19
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATAATAAAATATCTAAT
Found at i:97889920 original size:23 final size:23
Alignment explanation
Indices: 97889894--97889991 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
97889884 ATAAGTGCCA
97889894 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
97889917 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
97889940 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
97889962 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
97889985 CACTGAT
1 CACTGAT
97889992 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:97889959 original size:45 final size:45
Alignment explanation
Indices: 97889901--97889989 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
97889891 CCACACTGAT
* *
97889901 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
97889946 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
97889990 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:97900536 original size:12 final size:12
Alignment explanation
Indices: 97900516--97900545 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
97900506 CCTTCAAACC
*
97900516 TTTTCTGTTTTT
1 TTTTTTGTTTTT
97900528 TTTTTTGTTTTT
1 TTTTTTGTTTTT
97900540 TTTTTT
1 TTTTTT
97900546 TGGAATAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:97900539 original size:13 final size:13
Alignment explanation
Indices: 97900523--97900547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97900513 ACCTTTTCTG
97900523 TTTTTTTTTTTGT
1 TTTTTTTTTTTGT
97900536 TTTTTTTTTTTG
1 TTTTTTTTTTTG
97900548 GAATAGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (13 bp):
TTTTTTTTTTTGT
Done.