Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 31 of 320
Found at i:8784009 original size:18 final size:18
Alignment explanation
Indices: 8783982--8784016 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8783972 AGCACCAAAG
8783982 CTTTCATCCTCCTCCTCA
1 CTTTCATCCTCCTCCTCA
* *
8784000 CTTTCTTCCTCTTCCTC
1 CTTTCATCCTCCTCCTC
8784017 TTCTTCATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.49, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTTCATCCTCCTCCTCA
Found at i:8789015 original size:38 final size:36
Alignment explanation
Indices: 8788956--8789031 Score: 91
Period size: 38 Copynumber: 2.1 Consensus size: 36
8788946 AAACGCTACC
*
8788956 ATAAATATAAGAACTATTTTATTATATTAAAAATATAA
1 ATAAATATAAGAAATATTTTATTATATT--AAATATAA
* *
8788994 ATAAATATAATAAATGA-TTTATTGTATTAAATATAA
1 ATAAATATAAGAAAT-ATTTTATTATATTAAATATAA
8789030 AT
1 AT
8789032 TTTAAAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 10 0.29
38 23 0.68
39 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.41
Consensus pattern (36 bp):
ATAAATATAAGAAATATTTTATTATATTAAATATAA
Found at i:8793967 original size:18 final size:18
Alignment explanation
Indices: 8793946--8793981 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8793936 CAATTAAACC
8793946 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
* *
8793964 ATTTGATTTATTTATTTA
1 ATTTGATTGATATATTTA
8793982 TAATTAAGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:8794021 original size:18 final size:18
Alignment explanation
Indices: 8793958--8794023 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 18
8793948 TTGATTGATA
*
8793958 TATTTAATTTGATTTATT
1 TATTTAATTTAATTTATT
*
8793976 TATTTATAATTAAGTATTATTAT
1 TATTTA-ATTTAA-T-TTA-T-T
8793999 ATATTTAATTTAATTTATT
1 -TATTTAATTTAATTTATT
8794018 TATTTA
1 TATTTA
8794024 TAAATAAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
18 12 0.31
19 5 0.13
20 2 0.05
21 6 0.15
22 2 0.05
23 6 0.15
24 6 0.15
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TATTTAATTTAATTTATT
Found at i:8794083 original size:18 final size:18
Alignment explanation
Indices: 8794062--8794104 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
8794052 ATAATTTAAA
8794062 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
8794080 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
8794098 ATGTAAA
1 ATATAAA
8794105 AACAGTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:8794228 original size:14 final size:15
Alignment explanation
Indices: 8794209--8794246 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
8794199 CCAGAAATAT
8794209 AAATTATTTTTC-AA
1 AAATTATTTTTCGAA
8794223 AAATTATTTTTCGAA
1 AAATTATTTTTCGAA
8794238 AAA-TATTTT
1 AAATTATTTT
8794247 ACTGGCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (15 bp):
AAATTATTTTTCGAA
Found at i:8805232 original size:20 final size:20
Alignment explanation
Indices: 8805207--8805254 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
8805197 CACCCGTGTG
* *
8805207 GTGGCCTGGGACATGCCTGT
1 GTGGCCTGGAACATGCCCGT
8805227 GTGGCCTGGAACATGCCCGT
1 GTGGCCTGGAACATGCCCGT
8805247 GTGGCCTG
1 GTGGCCTG
8805255 CCTATAGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.10, C:0.27, G:0.40, T:0.23
Consensus pattern (20 bp):
GTGGCCTGGAACATGCCCGT
Found at i:8805909 original size:18 final size:20
Alignment explanation
Indices: 8805867--8805903 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8805857 ATATTTTATG
*
8805867 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
8805886 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
8805904 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:8805921 original size:11 final size:11
Alignment explanation
Indices: 8805901--8805935 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
8805891 TTTAATGAGA
*
8805901 TATTTTATTAT
1 TATTTCATTAT
8805912 TATTTCATTAT
1 TATTTCATTAT
8805923 TATTTCATTAT
1 TATTTCATTAT
8805934 TA
1 TA
8805936 ATTATTTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTTCATTAT
Found at i:8808137 original size:46 final size:46
Alignment explanation
Indices: 8808070--8808297 Score: 309
Period size: 46 Copynumber: 5.0 Consensus size: 46
8808060 AGTGTGCTCT
*
8808070 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAAC
*
8808116 CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAAC
*
8808162 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8808208 ATGATATGAAATG-AACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGA-AAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
8808254 ATGACA-GAAAATGAGTAAA-ACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTG-AAAGACCATGGTTGAAAGATACCATGGCA
8808298 TCATGTCAAA
Statistics
Matches: 166, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
45 1 0.01
46 162 0.98
47 2 0.01
48 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGAAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8809777 original size:37 final size:39
Alignment explanation
Indices: 8809690--8809786 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 39
8809680 CACACCTGAA
*
8809690 TGGCAACCAACGTCTCATCGGATAGTTCGAAGCAAATAAG
1 TGGCAACCAACGTCTCATCGGATAGTCCGAAGC-AATAAG
* * *
8809730 TGACGACCAACGTCTCATCGGCTAAG-CCGAAGC-A-AAG
1 TGGCAACCAACGTCTCATCGGAT-AGTCCGAAGCAATAAG
*
8809767 TGGCAACCAACGCCTCATCG
1 TGGCAACCAACGTCTCATCG
8809787 AATCTATCCG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
37 20 0.41
38 1 0.02
40 26 0.53
41 2 0.04
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16
Consensus pattern (39 bp):
TGGCAACCAACGTCTCATCGGATAGTCCGAAGCAATAAG
Found at i:8810966 original size:3 final size:3
Alignment explanation
Indices: 8810952--8810996 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
8810942 TTATCTTAAT
8810952 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8810997 GTAAGTAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8818184 original size:3 final size:3
Alignment explanation
Indices: 8818170--8818211 Score: 57
Period size: 3 Copynumber: 13.0 Consensus size: 3
8818160 TTATCTCAAT
8818170 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA GTAAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA -T-AA TAA TAA
8818212 ATAAGTAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 29 0.81
4 5 0.14
5 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8818214 original size:15 final size:14
Alignment explanation
Indices: 8818178--8818222 Score: 67
Period size: 15 Copynumber: 3.3 Consensus size: 14
8818168 ATTAATAGAT
8818178 AATAATAATAA-T-
1 AATAATAATAAGTA
8818190 AATAATAATAAGTA
1 AATAATAATAAGTA
8818204 AATAATAAATAAGTA
1 AATAAT-AATAAGTA
8818219 AATA
1 AATA
8818223 TATATTATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.37
13 1 0.03
14 6 0.20
15 12 0.40
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (14 bp):
AATAATAATAAGTA
Found at i:8819688 original size:22 final size:22
Alignment explanation
Indices: 8819645--8819689 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
8819635 ATCAATGAGT
* *
8819645 AAACCTTATCGATCATCGTCGA
1 AAACCTTATCAATCATCATCGA
*
8819667 AAACCTTATCAATCCTCATCGA
1 AAACCTTATCAATCATCATCGA
8819689 A
1 A
8819690 TAAATTCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.29, G:0.09, T:0.27
Consensus pattern (22 bp):
AAACCTTATCAATCATCATCGA
Found at i:8819981 original size:13 final size:13
Alignment explanation
Indices: 8819963--8819992 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8819953 ACATCCCCAT
8819963 ACGGGCAGACCAC
1 ACGGGCAGACCAC
*
8819976 ACGGGCAGACTAC
1 ACGGGCAGACCAC
8819989 ACGG
1 ACGG
8819993 CCGTGTCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.33, G:0.33, T:0.03
Consensus pattern (13 bp):
ACGGGCAGACCAC
Found at i:8829347 original size:59 final size:60
Alignment explanation
Indices: 8829276--8829392 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 60
8829266 ATCACTTTAA
* * * *
8829276 TATTAAATTAATATAATATTTATC-AAGATAAATATTAGATTAAATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
* * *
8829335 TATTAAAATAATAGAATGTTTATCTTGTAGATACACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTATC-T-AAGATAAACATTAAATTAAATTTAATATTAA
8829393 TATAATCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
62 27 0.56
ACGTcount: A:0.48, C:0.04, G:0.05, T:0.43
Consensus pattern (60 bp):
TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATCT
Found at i:8829417 original size:11 final size:11
Alignment explanation
Indices: 8829371--8829478 Score: 55
Period size: 11 Copynumber: 9.4 Consensus size: 11
8829361 GTAGATACAC
8829371 ATTAAATTAA-
1 ATTAAATTAAT
8829381 ATTTAATATTAAT
1 A-TTAA-ATTAAT
*
8829394 ATAATCAATTTAAT
1 AT--T-AAATTAAT
8829408 ATTAAATTAAT
1 ATTAAATTAAT
*
8829419 A--AAA-TACT
1 ATTAAATTAAT
*
8829427 ATTAAGATAAAT
1 ATTAA-ATTAAT
8829439 ATTAAATTAA-
1 ATTAAATTAAT
8829449 ATTTAATATTAGAAT
1 A-TTAA-ATT--AAT
*
8829464 ATTAAAATAAT
1 ATTAAATTAAT
8829475 ATTA
1 ATTA
8829479 TTTTTGAAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 29
0.68 0.06 0.26
Matches are distributed among these distances:
8 4 0.05
9 3 0.04
10 4 0.05
11 28 0.37
12 17 0.22
13 3 0.04
14 14 0.18
15 3 0.04
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTAAATTAAT
Found at i:8844462 original size:23 final size:23
Alignment explanation
Indices: 8844435--8844481 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
8844425 GTTAAATGTT
*
8844435 CACAAAAGTTGGGTGAACAATCA
1 CACAAAAGCTGGGTGAACAATCA
8844458 CACAAAAGCTGGGTGAACAATCA
1 CACAAAAGCTGGGTGAACAATCA
8844481 C
1 C
8844482 TGAGCATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (23 bp):
CACAAAAGCTGGGTGAACAATCA
Found at i:8848702 original size:45 final size:45
Alignment explanation
Indices: 8848651--8848806 Score: 201
Period size: 45 Copynumber: 3.5 Consensus size: 45
8848641 AGTTATGGTT
* *
8848651 GGTAAGCTCT-TTCGAGCTGAACAGTAAGCTCTATTGAGATGAAAC
1 GGTAAGCTCTATT-GAGCTGAACGGTAAGCTCTATTGAGCTGAAAC
* *
8848696 GGTAAGCTCTATTGAGCTGAATGGTAAGCT-TCAATGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAACGGTAAGCTCT-ATTGAGCTGAAAC
*
8848741 AGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTG-AACGGTAAGCTCTATTGAGCTGAAAC
* *
8848786 GGTAAGCTCCAATGAGCTGAA
1 GGTAAGCTCTATTGAGCTGAA
8848807 GTAGTAAGCT
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
44 3 0.03
45 74 0.76
46 19 0.20
47 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (45 bp):
GGTAAGCTCTATTGAGCTGAACGGTAAGCTCTATTGAGCTGAAAC
Found at i:8848704 original size:23 final size:23
Alignment explanation
Indices: 8848651--8848806 Score: 196
Period size: 23 Copynumber: 6.9 Consensus size: 23
8848641 AGTTATGGTT
8848651 GGTAAGCTCT-TTCGAGCTG-AAC
1 GGTAAGCTCTATT-GAGCTGAAAC
* *
8848673 AGTAAGCTCTATTGAGATGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
*
8848696 GGTAAGCTCTATTGAGCTG-AAT
1 GGTAAGCTCTATTGAGCTGAAAC
*
8848718 GGTAAGCT-TCAATGAGCTGAAAC
1 GGTAAGCTCT-ATTGAGCTGAAAC
*
8848741 AGTAAGCTCTATTGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAAAC
8848764 GGTAAGCTCTATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTGAAAC
* *
8848786 GGTAAGCTCCAATGAGCTGAA
1 GGTAAGCTCTATTGAGCTGAA
8848807 GTAGTAAGCT
Statistics
Matches: 116, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
21 1 0.01
22 52 0.45
23 62 0.53
24 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (23 bp):
GGTAAGCTCTATTGAGCTGAAAC
Found at i:8848754 original size:68 final size:68
Alignment explanation
Indices: 8848664--8848817 Score: 247
Period size: 68 Copynumber: 2.3 Consensus size: 68
8848654 AAGCTCTTTC
* * *
8848664 GAGCTG-AACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTGAATGGTAAGCTTC
1 GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8848728 AAT
66 AAT
*
8848731 GAGCTGAAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
1 GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8848796 AAT
66 AAT
**
8848799 GAGCTGAAGTAGTAAGCTC
1 GAGCTGAAACAGTAAGCTC
8848818 ATACGAGCTG
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
67 6 0.08
68 74 0.93
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (68 bp):
GAGCTGAAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
AAT
Found at i:8848816 original size:23 final size:23
Alignment explanation
Indices: 8848652--8848840 Score: 183
Period size: 23 Copynumber: 8.3 Consensus size: 23
8848642 GTTATGGTTG
8848652 GTAAGCTCT-TTCGAGCTG-AACA
1 GTAAGCTCTATT-GAGCTGAAACA
* *
8848674 GTAAGCTCTATTGAGATGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
**
8848697 GTAAGCTCTATTGAGCTG-AATG
1 GTAAGCTCTATTGAGCTGAAACA
*
8848719 GTAAGCT-TCAATGAGCTGAAACA
1 GTAAGCTCT-ATTGAGCTGAAACA
*
8848742 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
*
8848765 GTAAGCTCTATTGAGCT-AAACG
1 GTAAGCTCTATTGAGCTGAAACA
* * **
8848787 GTAAGCTCCAATGAGCTGAAGTA
1 GTAAGCTCTATTGAGCTGAAACA
* * *
8848810 GTAAGCTC-ATACGAGCTGTATCA
1 GTAAGCTCTAT-TGAGCTGAAACA
8848833 GTAAGCTC
1 GTAAGCTC
8848841 ATACGAGCTG
Statistics
Matches: 141, Mismatches: 19, Indels: 13
0.82 0.11 0.08
Matches are distributed among these distances:
21 1 0.01
22 53 0.38
23 86 0.61
24 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:8848826 original size:45 final size:45
Alignment explanation
Indices: 8848651--8848827 Score: 184
Period size: 45 Copynumber: 3.9 Consensus size: 45
8848641 AGTTATGGTT
** *
8848651 GGTAAGCTCT-TTCGAGCTGAACAGTAAGCTC-TATTGAGATGAAAC
1 GGTAAGCTCTATT-GAGCTGAATGGTAAGCTCATA-TGAGCTGAAAC
8848696 GGTAAGCTCTATTGAGCTGAATGGTAAGCTTCA-ATGAGCTGAAAC
1 GGTAAGCTCTATTGAGCTGAATGGTAAGC-TCATATGAGCTGAAAC
* *
8848741 AGTAAGCTCTATTGAGCTGAAACGGTAAGCTC-TATTGAGCT-AAAC
1 GGTAAGCTCTATTGAGCTG-AATGGTAAGCTCATA-TGAGCTGAAAC
* * * *
8848786 GGTAAGCTCCAATGAGCTGAAGTAGTAAGCTCATACGAGCTG
1 GGTAAGCTCTATTGAGCTGAA-TGGTAAGCTCATATGAGCTG
8848828 TATCAGTAAG
Statistics
Matches: 112, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
44 2 0.02
45 88 0.79
46 22 0.20
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (45 bp):
GGTAAGCTCTATTGAGCTGAATGGTAAGCTCATATGAGCTGAAAC
Found at i:8848837 original size:68 final size:68
Alignment explanation
Indices: 8848664--8848840 Score: 223
Period size: 68 Copynumber: 2.6 Consensus size: 68
8848654 AAGCTCTTTC
* * * * * *
8848664 GAGCTG-AACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATTGAGCTGAATGGTAAGCTTC
1 GAGCTGAAACAGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8848728 AAT
66 AAT
* *
8848731 GAGCTGAAACAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
1 GAGCTGAAACAGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
8848796 AAT
66 AAT
** * *
8848799 GAGCTGAAGTAGTAAGCTC-ATACGAGCTGTATCAGTAAGCTC
1 GAGCTGAAACAGTAAGCTCTAT-CGAGCTGAAACAGTAAGCTC
8848841 ATACGAGCTG
Statistics
Matches: 98, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
67 8 0.08
68 90 0.92
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (68 bp):
GAGCTGAAACAGTAAGCTCTATCGAGCTGAAACAGTAAGCTCTATTGAGCTAAACGGTAAGCTCC
AAT
Found at i:8851694 original size:17 final size:17
Alignment explanation
Indices: 8851658--8851697 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8851648 TTAAAAAAAA
* *
8851658 TAAAAACATAATGCTTT
1 TAAAAACATAATGATAT
*
8851675 TAAAAACATAATTATAT
1 TAAAAACATAATGATAT
8851692 TAAAAA
1 TAAAAA
8851698 TGTTATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (17 bp):
TAAAAACATAATGATAT
Found at i:8851971 original size:16 final size:16
Alignment explanation
Indices: 8851950--8852000 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
8851940 TGAATTATTG
8851950 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* * **
8851966 ATTACAGCCCTATTAT
1 ATTACAACTCTATTCC
*
8851982 ATTACAACTGTATTCC
1 ATTACAACTCTATTCC
8851998 ATT
1 ATT
8852001 CTAACGAACC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:8855063 original size:7 final size:7
Alignment explanation
Indices: 8855043--8855118 Score: 116
Period size: 7 Copynumber: 10.9 Consensus size: 7
8855033 GGTTTGTGGT
8855043 GTGATTG
1 GTGATTG
* *
8855050 CTCATTG
1 GTGATTG
*
8855057 ATGATTG
1 GTGATTG
8855064 GTGATTG
1 GTGATTG
8855071 GTGATTG
1 GTGATTG
8855078 GTGATTG
1 GTGATTG
*
8855085 GTAATTG
1 GTGATTG
8855092 GTGATTG
1 GTGATTG
8855099 GTGATTG
1 GTGATTG
8855106 GTGATTG
1 GTGATTG
8855113 GTGATT
1 GTGATT
8855119 AGTAAAAAGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 62 1.00
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (7 bp):
GTGATTG
Found at i:8860488 original size:34 final size:34
Alignment explanation
Indices: 8860445--8860513 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
8860435 AATAATCAGC
*
8860445 AAAGAATACTTCAGTGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
8860479 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
1 AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
8860513 A
1 A
8860514 TACTTGCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (34 bp):
AAAGAATACTTCAATGTCAAGAAACTAAGGTAGA
Found at i:8864871 original size:149 final size:149
Alignment explanation
Indices: 8864601--8864904 Score: 572
Period size: 149 Copynumber: 2.0 Consensus size: 149
8864591 ATCAACTAAA
*
8864601 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAATTTTCTTC
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
8864666 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
8864731 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
* * *
8864750 AACTAAATACGTACACCTTTTAAGCTTGTTTCTTATTCATGGCCGTAACATCATAAACTTTCTTT
1 AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
8864815 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
66 GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
8864880 TACTTTGATAAATCAGAAC
131 TACTTTGATAAATCAGAAC
8864899 AACTAA
1 AACTAA
8864905 TGAAGGTACA
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (149 bp):
AACTAAATACATACACCTTTTAAGCTTGTTTCTCATTCATGGCCGTAACATCATAAACTTTCTTC
GCCATATATCAAGTTGATGAGTGACAAACCAGTTTTATTGTCTGGCCAACAGGTTGATTGTTAAG
TACTTTGATAAATCAGAAC
Found at i:8866703 original size:77 final size:77
Alignment explanation
Indices: 8866613--8866840 Score: 294
Period size: 79 Copynumber: 2.9 Consensus size: 77
8866603 CAATTCTCCA
*
8866613 CATGGTATCAAATGTTTTCGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
*
8866678 TCATGTTTATTC
66 TCATGTTCATTC
* * * *
8866690 TATGGTATTAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTCTTTTCCTGGTTGAAATCTTGCT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTT-TTTT-CTGGTCGAATTCTTGCT
*
8866755 TCTCTTGTTCATTC
64 TCTCATGTTCATTC
* * * *
8866769 CATGGTATCAGATGTTTTTGGTTCCTTACTAAGAAGAGTTTTTTTTTTTTCTTGGTCGAATTCTT
1 CATGGTATCAAATGTTTTTGGTTCTTTCCTAAG-A-AG--TGTTTTTTTTC-TGGTCGAATTCTT
8866834 GCTTCTC
61 GCTTCTC
8866841 CTATTCTATT
Statistics
Matches: 129, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
77 39 0.30
78 4 0.03
79 55 0.43
80 1 0.01
81 3 0.02
82 22 0.17
83 5 0.04
ACGTcount: A:0.17, C:0.16, G:0.17, T:0.50
Consensus pattern (77 bp):
CATGGTATCAAATGTTTTTGGTTCTTTCCTAAGAAGTGTTTTTTTTCTGGTCGAATTCTTGCTTC
TCATGTTCATTC
Found at i:8868576 original size:26 final size:24
Alignment explanation
Indices: 8868546--8868595 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
8868536 AAATAAAAAA
*
8868546 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
8868572 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
8868596 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:8875397 original size:19 final size:18
Alignment explanation
Indices: 8875368--8875417 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
8875358 GTATATATTT
8875368 TAAATTTATTTAGGTAGA
1 TAAATTTATTTAGGTAGA
8875386 TAAATCTTATTTAGGTAGA
1 TAAAT-TTATTTAGGTAGA
*
8875405 TAAGTTTTATTTA
1 TAA-ATTTATTTA
8875418 TATTCTAGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 23 0.79
20 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (18 bp):
TAAATTTATTTAGGTAGA
Found at i:8875491 original size:42 final size:42
Alignment explanation
Indices: 8875432--8875522 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
8875422 CTAGGAATAT
*
8875432 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
* *
8875474 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
8875516 TTTTCTT
1 TTTTCTT
8875523 AATTAGGATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATCTTTTAGTAGTTTATTAGAATAAGAGAACTA
Found at i:8880175 original size:42 final size:43
Alignment explanation
Indices: 8880112--8880202 Score: 157
Period size: 42 Copynumber: 2.1 Consensus size: 43
8880102 ATTCTAGGAA
*
8880112 TATTTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGAGAAC
1 TATTTTTATTTTATATTTTAGTAGTTTATTAGAATAAGAGAAC
*
8880155 TATTTTT-TTTTATATTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTTATTTTATATTTTAGTAGTTTATTAGAATAAGAGAAC
8880197 TATTTT
1 TATTTT
8880203 CTCAATTAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
42 39 0.85
43 7 0.15
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (43 bp):
TATTTTTATTTTATATTTTAGTAGTTTATTAGAATAAGAGAAC
Found at i:8886041 original size:2 final size:2
Alignment explanation
Indices: 8886034--8886067 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8886024 TGTTTCCATA
8886034 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8886068 AGAAATAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8890980 original size:24 final size:24
Alignment explanation
Indices: 8890948--8890997 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8890938 AGAGGAACAG
8890948 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
8890972 TCGAGTACCAAGTAGTTTGAAAGT
1 TCGAGTACCAAGTAGTTTGAAAGT
8890996 TC
1 TC
8890998 TTGCCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (24 bp):
TCGAGTACCAAGTAGTTTGAAAGT
Found at i:8895284 original size:14 final size:14
Alignment explanation
Indices: 8895265--8895300 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
8895255 TTAGTTTTTC
8895265 TTATTTTGATGACT
1 TTATTTTGATGACT
8895279 TTATTTTGATGACT
1 TTATTTTGATGACT
8895293 TTATTTTG
1 TTATTTTG
8895301 TTAATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.06, G:0.14, T:0.61
Consensus pattern (14 bp):
TTATTTTGATGACT
Found at i:8896622 original size:30 final size:30
Alignment explanation
Indices: 8896586--8896643 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
8896576 TCGAGAAAGA
*
8896586 TCTTAAATATTAATATTGATTCTAAGTTAG
1 TCTTAAATATTAATATTGATACTAAGTTAG
8896616 TCTTAAATATTAATATTGATACTAAGTT
1 TCTTAAATATTAATATTGATACTAAGTT
8896644 TAATTTAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (30 bp):
TCTTAAATATTAATATTGATACTAAGTTAG
Found at i:8898543 original size:21 final size:20
Alignment explanation
Indices: 8898515--8898553 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8898505 CAAACCATGT
8898515 ATCAAATTTCAAGTATATGA
1 ATCAAATTTCAAGTATATGA
*
8898535 ATCATAATTTCAATTATAT
1 ATCA-AATTTCAAGTATAT
8898554 TTTCATGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (20 bp):
ATCAAATTTCAAGTATATGA
Found at i:8900185 original size:19 final size:17
Alignment explanation
Indices: 8900141--8900192 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
8900131 ACCCAAAAAT
* * *
8900141 TATAAAATTATTTTTAC
1 TATAAATTTTTTTTTTC
8900158 TATAAATTTTTTTTTTC
1 TATAAATTTTTTTTTTC
8900175 TATAAATATTTTTATTTT
1 TATAAAT-TTTTT-TTTT
8900193 TCGAAACATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 21 0.70
18 5 0.17
19 4 0.13
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TATAAATTTTTTTTTTC
Found at i:8901672 original size:34 final size:34
Alignment explanation
Indices: 8901599--8901677 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
8901589 GGACAAATCC
* ***
8901599 GTTATAAGCATATTAATTGTTGTTGTATCGAACT
1 GTTATAAGCATATTAATCGTTACCGTATCGAACT
* * *
8901633 ATTATAAGCATATTAATCGTTACCGTATTGATCT
1 GTTATAAGCATATTAATCGTTACCGTATCGAACT
8901667 GTTATAAGCAT
1 GTTATAAGCAT
8901678 GTCATACTGC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (34 bp):
GTTATAAGCATATTAATCGTTACCGTATCGAACT
Found at i:8905037 original size:11 final size:11
Alignment explanation
Indices: 8905021--8905063 Score: 59
Period size: 11 Copynumber: 3.7 Consensus size: 11
8905011 TGAAATCAAT
8905021 TAATTCAACTA
1 TAATTCAACTA
*
8905032 TAATTCAATCAA
1 TAATTCAA-CTA
8905044 TTAATTCAACTA
1 -TAATTCAACTA
8905056 TAATTCAA
1 TAATTCAA
8905064 GAGATTTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 16 0.57
12 4 0.14
13 8 0.29
ACGTcount: A:0.47, C:0.16, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATTCAACTA
Found at i:8905044 original size:24 final size:24
Alignment explanation
Indices: 8905014--8905063 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8905004 TAGTGATTGA
8905014 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
8905038 AATCAATTAATTCAACTATAATTC
1 AATCAATTAATTCAACTATAATTC
8905062 AA
1 AA
8905064 GAGATTTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (24 bp):
AATCAATTAATTCAACTATAATTC
Found at i:8905286 original size:19 final size:20
Alignment explanation
Indices: 8905241--8905289 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
8905231 TATATTACTC
*
8905241 TAATAAAATAGTAAAATATT
1 TAATAATATAGTAAAATATT
8905261 TAATAATATAGT-AAAT-TT
1 TAATAATATAGTAAAATATT
8905279 TAATTAATATA
1 TAA-TAATATA
8905290 TAAGCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
TAATAATATAGTAAAATATT
Found at i:8905750 original size:2 final size:2
Alignment explanation
Indices: 8905743--8905821 Score: 99
Period size: 2 Copynumber: 40.5 Consensus size: 2
8905733 AAGCCCCTCA
* * * * *
8905743 CT CT CT CT CT CC CT CC CT CT CT TT TT CT CT CC CT CT CT CT C-
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8905784 CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8905822 CCTCCCTCCC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
1 2 0.03
2 65 0.97
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:8905762 original size:16 final size:16
Alignment explanation
Indices: 8905737--8905829 Score: 87
Period size: 16 Copynumber: 5.6 Consensus size: 16
8905727 AGCTTCAAGC
*
8905737 CCCTCACTCTCTCTCT
1 CCCTCCCTCTCTCTCT
* *
8905753 CCCTCCCTCTCTTTTT
1 CCCTCCCTCTCTCTCT
*
8905769 CTCTCCCTCTCTCTCCTT
1 CCCTCCCTCTCTCT-C-T
*
8905787 CTCTCTCTCTCTCTCTCT
1 C-C-CTCCCTCTCTCTCT
* *
8905805 CTCTCTCTCTCTCTCT
1 CCCTCCCTCTCTCTCT
8905821 CCCTCCCTC
1 CCCTCCCTC
8905830 CCTCCCCCCC
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
16 46 0.74
18 4 0.06
19 1 0.02
20 11 0.18
ACGTcount: A:0.01, C:0.55, G:0.00, T:0.44
Consensus pattern (16 bp):
CCCTCCCTCTCTCTCT
Found at i:8905764 original size:12 final size:12
Alignment explanation
Indices: 8905743--8905835 Score: 79
Period size: 12 Copynumber: 8.1 Consensus size: 12
8905733 AAGCCCCTCA
8905743 CTCTCTCTCTCC
1 CTCTCTCTCTCC
8905755 CTC-C-CTCT--
1 CTCTCTCTCTCC
* *
8905763 CTTTTTCTCTCC
1 CTCTCTCTCTCC
*
8905775 CTCTCTCTC-CTT
1 CTCTCTCTCTC-C
*
8905787 CTCTCTCTCTCT
1 CTCTCTCTCTCC
*
8905799 CTCTCTCTCTCT
1 CTCTCTCTCTCC
8905811 CTCTCTCTCTCC
1 CTCTCTCTCTCC
* *
8905823 CTCCCTCCCTCC
1 CTCTCTCTCTCC
8905835 C
1 C
8905836 CCCCCCACAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.03
10 8 0.12
11 2 0.03
12 54 0.81
13 1 0.01
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (12 bp):
CTCTCTCTCTCC
Found at i:8905862 original size:2 final size:2
Alignment explanation
Indices: 8905857--8905888 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8905847 CACACACACA
8905857 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8905889 TTCAGTTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8907703 original size:10 final size:10
Alignment explanation
Indices: 8907684--8907733 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
8907674 TTAAATTCTA
8907684 AAAGATAAAT
1 AAAGATAAAT
8907694 ACAA-ATAAAT
1 A-AAGATAAAT
* *
8907704 AAATATAATT
1 AAAGATAAAT
8907714 AAAGATAAAT
1 AAAGATAAAT
8907724 AAAGATAAAT
1 AAAGATAAAT
8907734 GCTAAAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:8908731 original size:76 final size:74
Alignment explanation
Indices: 8908605--8908758 Score: 227
Period size: 76 Copynumber: 2.1 Consensus size: 74
8908595 ATCAGAAACA
* * * * *
8908605 TGGTTTCGAAGCCACCAAATTCGGTGAGTAAGTTTGTAAATATTATTATTAGTTGTAACAGCCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
8908670 ATTTTTTTCAG
66 A--TTTTTCAG
* *
8908681 TGGTTTCGAGGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGTCCT
1 TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
8908746 ATTTTTCAG
66 ATTTTTCAG
8908755 TGGT
1 TGGT
8908759 GTCGGAAACA
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
74 12 0.17
76 59 0.83
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (74 bp):
TGGTTTCGAAGCCACCAAATCCAGCGAGTAAGTTCGTAAATATTATTATTAGTCGTAACAGCCCT
ATTTTTCAG
Found at i:8910233 original size:21 final size:21
Alignment explanation
Indices: 8910207--8910269 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
8910197 TTGGGTGGAA
*
8910207 CAGCTCTTACAAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
8910228 CAGCTCTTACGAGCTTTTGTT
1 CAGCTCTTACGAGCTTCTGTT
*
8910249 TAGCTCTTACGAGCTTCTGTT
1 CAGCTCTTACGAGCTTCTGTT
8910270 GGCGTATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.41
Consensus pattern (21 bp):
CAGCTCTTACGAGCTTCTGTT
Found at i:8914278 original size:80 final size:81
Alignment explanation
Indices: 8914194--8914350 Score: 271
Period size: 81 Copynumber: 2.0 Consensus size: 81
8914184 TTGATGTCTC
**
8914194 AAATCTATACCAAAAAAGGGTGAG-AGTTTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
1 AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
8914258 ACTCTTGATAATTTCT
66 ACTCTTGATAATTTCT
* *
8914274 AAATCTATATCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCTAATGCAATGCCATAAAGAACT
1 AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
8914339 ACTCTTGATAAT
66 ACTCTTGATAAT
8914351 GATGTTTGGA
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
80 23 0.32
81 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (81 bp):
AAATCTATACCAAAAAAGGGTGAGAACATTTTTTTTTGAGTTCCAATGCAATGCCATAAAGAACT
ACTCTTGATAATTTCT
Found at i:8914628 original size:16 final size:16
Alignment explanation
Indices: 8914604--8914634 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8914594 TTTAATTTCA
*
8914604 TGTTTTTATTTTTTTG
1 TGTTATTATTTTTTTG
8914620 TGTTATTATTTTTTT
1 TGTTATTATTTTTTT
8914635 TAATTTGTCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.81
Consensus pattern (16 bp):
TGTTATTATTTTTTTG
Found at i:8914710 original size:39 final size:39
Alignment explanation
Indices: 8914667--8914748 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
8914657 TGCTATAAAT
*
8914667 ATTTTTTTATTATGAAGTAGATGTCTATTAAAATAAGAA
1 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
8914706 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
1 ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
8914745 ATTT
1 ATTT
8914749 GATGTATCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (39 bp):
ATTTTTTTATTATGAAGTAGATGCCTATTAAAATAAGAA
Found at i:8920931 original size:25 final size:25
Alignment explanation
Indices: 8920897--8920947 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
8920887 TTAAAATAAT
*
8920897 TGTGTGAAAAGAAGAGAAAGAAATC
1 TGTGTCAAAAGAAGAGAAAGAAATC
8920922 TGTGTCAAAAGAAGAGAAAGAAATC
1 TGTGTCAAAAGAAGAGAAAGAAATC
8920947 T
1 T
8920948 CACAAATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.06, G:0.25, T:0.18
Consensus pattern (25 bp):
TGTGTCAAAAGAAGAGAAAGAAATC
Found at i:8928883 original size:48 final size:48
Alignment explanation
Indices: 8928812--8928907 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
8928802 AAGAGATGGT
8928812 TGTGATAAAGAAAAGTAGAGTTCACCCTTACGAAATGTTACATCCATA
1 TGTGATAAAGAAAAGTAGAGTTCACCCTTACGAAATGTTACATCCATA
8928860 TGTGATAAAGAAAAGTAGAGTTCACCCTTACGAAATGTTACATCCATA
1 TGTGATAAAGAAAAGTAGAGTTCACCCTTACGAAATGTTACATCCATA
8928908 CTTACAAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.27
Consensus pattern (48 bp):
TGTGATAAAGAAAAGTAGAGTTCACCCTTACGAAATGTTACATCCATA
Found at i:8937932 original size:42 final size:42
Alignment explanation
Indices: 8937873--8937957 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
8937863 GAATGATTAC
8937873 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
1 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
8937915 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
1 AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
8937957 A
1 A
8937958 CTTGTAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (42 bp):
AACCATAATCACATTTTCCCTCAAATCAAATTGTGAAGGCAT
Found at i:8943510 original size:73 final size:73
Alignment explanation
Indices: 8943428--8943613 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
8943418 ACAACTTGAC
8943428 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8943493 CACTAACA
66 CACTAACA
*
8943501 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8943566 CACTAACA
66 CACTAACA
*
8943574 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
8943614 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:8947941 original size:73 final size:73
Alignment explanation
Indices: 8947859--8948044 Score: 354
Period size: 73 Copynumber: 2.5 Consensus size: 73
8947849 ACAACTTGAC
8947859 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8947924 CACTAACA
66 CACTAACA
*
8947932 AACTTAGTTGGAATACAACTAAGTTTTATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
8947997 CACTAACA
66 CACTAACA
*
8948005 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
8948045 AATAATAATA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 110 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:8956088 original size:22 final size:22
Alignment explanation
Indices: 8956063--8956116 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
8956053 TTGTTTTTAA
* *
8956063 AAAATTAT-TTAATTTTAATTAT
1 AAAATTATATAAATATT-ATTAT
*
8956085 AAAAATATATAAATATTATTAT
1 AAAATTATATAAATATTATTAT
*
8956107 AACATTATAT
1 AAAATTATAT
8956117 TTTTTAAACA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AAAATTATATAAATATTATTAT
Found at i:8959668 original size:55 final size:55
Alignment explanation
Indices: 8959584--8959700 Score: 216
Period size: 55 Copynumber: 2.1 Consensus size: 55
8959574 CTGACTTGGG
*
8959584 TCACACGGCCAACCACACGCCCGTGTGACCAGCCTGTGTGCCATTCGAAATGACC
1 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
*
8959639 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGGCC
1 TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
8959694 TCACACG
1 TCACACG
8959701 CCCGTGTGCC
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.23, C:0.39, G:0.22, T:0.15
Consensus pattern (55 bp):
TCACACGGCCAACCACACGCCCGTGTGACCAGCCCGTGTGCCATTCGAAATGACC
Found at i:8960611 original size:17 final size:17
Alignment explanation
Indices: 8960591--8960646 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
8960581 ATAATAATAT
8960591 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
** **
8960608 ACAAAC-CTATAACAATAT
1 AC-AACTC-ATATTAATCC
8960626 ACAACTCATATTAATCC
1 ACAACTCATATTAATCC
8960643 ACAA
1 ACAA
8960647 ACCTATCACA
Statistics
Matches: 28, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (17 bp):
ACAACTCATATTAATCC
Found at i:8960619 original size:35 final size:35
Alignment explanation
Indices: 8960580--8960652 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
8960570 AACAATTGAA
*
8960580 TATAATAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
8960615 TATAACAATATACAACTCATATTAATCCACAAACC
1 TATAACAATATACAACTCATATTAATCCACAAACC
8960650 TAT
1 TAT
8960653 CACATGATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (35 bp):
TATAACAATATACAACTCATATTAATCCACAAACC
Found at i:8965992 original size:18 final size:17
Alignment explanation
Indices: 8965951--8965992 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8965941 AAAAGTTGAG
8965951 TTTT-AATAGCTAAAGA
1 TTTTAAATAGCTAAAGA
* *
8965967 TATTAAATAGCTATAGAA
1 TTTTAAATAGCTAAAG-A
8965985 TTTTAAAT
1 TTTTAAAT
8965993 TGGAGGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (17 bp):
TTTTAAATAGCTAAAGA
Found at i:8967016 original size:25 final size:25
Alignment explanation
Indices: 8966988--8967054 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
8966978 GACACACCAC
8966988 AGCTCGTATGAGCTTCCCGTTATAT
1 AGCTCGTATGAGCTTCCCGTTATAT
* * * *
8967013 AGCTCGCATGAGTTTTCCGTTATTT
1 AGCTCGTATGAGCTTCCCGTTATAT
8967038 AGCTCGTATGAGCTTCC
1 AGCTCGTATGAGCTTCC
8967055 TGATATTCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCCCGTTATAT
Found at i:8967297 original size:12 final size:12
Alignment explanation
Indices: 8967280--8967320 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8967270 ATATGTGTTA
8967280 GATTTTATATGT
1 GATTTTATATGT
*
8967292 GATTTTCAT-T-A
1 GATTTT-ATATGT
8967303 GATTTTATATGT
1 GATTTTATATGT
8967315 GATTTT
1 GATTTT
8967321 CATGGCTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 2 0.08
11 7 0.29
12 13 0.54
13 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (12 bp):
GATTTTATATGT
Found at i:8967307 original size:23 final size:23
Alignment explanation
Indices: 8967277--8967323 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8967267 ACCATATGTG
8967277 TTAGATTTTATATGTGATTTTCA
1 TTAGATTTTATATGTGATTTTCA
8967300 TTAGATTTTATATGTGATTTTCA
1 TTAGATTTTATATGTGATTTTCA
8967323 T
1 T
8967324 GGCTAATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.13, T:0.57
Consensus pattern (23 bp):
TTAGATTTTATATGTGATTTTCA
Found at i:8975852 original size:25 final size:25
Alignment explanation
Indices: 8975818--8975868 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
8975808 TTCCTTATAA
**
8975818 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8975843 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8975868 A
1 A
8975869 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:8975867 original size:12 final size:12
Alignment explanation
Indices: 8975821--8975868 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
8975811 CTTATAAACT
8975821 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
8975833 TTCTATTAGGACT
1 TTAAATTAGGA-A
8975846 TTAAATTAGGAA
1 TTAAATTAGGAA
*
8975858 TTAGATTAGGA
1 TTAAATTAGGA
8975869 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:8980128 original size:25 final size:25
Alignment explanation
Indices: 8980094--8980144 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
8980084 TTCCTTATAA
**
8980094 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8980119 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAGGAATTAGATTAGG
8980144 A
1 A
8980145 TTTTCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTAGATTAGG
Found at i:8980143 original size:12 final size:12
Alignment explanation
Indices: 8980097--8980144 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
8980087 CTTATAAACT
8980097 TTAAATTAGGAA
1 TTAAATTAGGAA
** *
8980109 TTCTATTAGGACT
1 TTAAATTAGGA-A
8980122 TTAAATTAGGAA
1 TTAAATTAGGAA
*
8980134 TTAGATTAGGA
1 TTAAATTAGGA
8980145 TTTTCCTTTG
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 19 0.68
13 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (12 bp):
TTAAATTAGGAA
Found at i:8994545 original size:24 final size:24
Alignment explanation
Indices: 8994517--8994567 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
8994507 AAATTAATAC
8994517 ATGCAGTGGCTTATATGTCTTTAA
1 ATGCAGTGGCTTATATGTCTTTAA
* *
8994541 ATGCAGTGGCTTATGTGTCTTTTA
1 ATGCAGTGGCTTATATGTCTTTAA
8994565 ATG
1 ATG
8994568 TTAGGGGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.12, G:0.24, T:0.43
Consensus pattern (24 bp):
ATGCAGTGGCTTATATGTCTTTAA
Found at i:8994636 original size:74 final size:74
Alignment explanation
Indices: 8994549--8994765 Score: 434
Period size: 74 Copynumber: 2.9 Consensus size: 74
8994539 AAATGCAGTG
8994549 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
1 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
8994614 TTTTTAGTA
66 TTTTTAGTA
8994623 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
1 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
8994688 TTTTTAGTA
66 TTTTTAGTA
8994697 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
1 GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
8994762 TTTT
66 TTTT
8994766 GGTAGAAGTC
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 143 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (74 bp):
GCTTATGTGTCTTTTAATGTTAGGGGTAAAGGTTGAAACACTACCACACACACGAGACTCTATTC
TTTTTAGTA
Found at i:8996067 original size:7 final size:7
Alignment explanation
Indices: 8996051--8996117 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
8996041 CTCGATCCTA
8996051 AATTCTC
1 AATTCTC
*
8996058 AATCCTC
1 AATTCTC
*
8996065 AATTTTC
1 AATTCTC
8996072 -ATTCCTC
1 AATT-CTC
*
8996079 AATTTTC
1 AATTCTC
*
8996086 AATTTTC
1 AATTCTC
8996093 AA-TCATC
1 AATTC-TC
8996100 AATTCTC
1 AATTCTC
8996107 AATTCTC
1 AATTCTC
8996114 AATT
1 AATT
8996118 ATTATTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
6 4 0.08
7 41 0.82
8 5 0.10
ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45
Consensus pattern (7 bp):
AATTCTC
Found at i:8996079 original size:21 final size:21
Alignment explanation
Indices: 8996055--8996116 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
8996045 ATCCTAAATT
* *
8996055 CTCAATCCTCAATTTTCATTC
1 CTCAATTCTCAATTTTCAATC
*
8996076 CTCAATTTTCAATTTTCAATC
1 CTCAATTCTCAATTTTCAATC
* *
8996097 ATCAATTCTCAATTCTCAAT
1 CTCAATTCTCAATTTTCAAT
8996117 TATTATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.44
Consensus pattern (21 bp):
CTCAATTCTCAATTTTCAATC
Found at i:9000088 original size:21 final size:21
Alignment explanation
Indices: 9000009--9000104 Score: 111
Period size: 21 Copynumber: 4.5 Consensus size: 21
8999999 AGGCACTTTA
*
9000009 TGTGTCGTATTTCAGGTACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
*
9000032 TGTGTCGTAGCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
9000053 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
9000074 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
9000095 TGTGTCGTAT
1 TGTGTCGTAT
9000105 ACTGATCAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 55 0.86
23 9 0.14
ACGTcount: A:0.14, C:0.22, G:0.28, T:0.36
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:9000089 original size:42 final size:42
Alignment explanation
Indices: 8999998--9000104 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
8999988 CTTTACTGAT
* * *
8999998 CAGGCACTTTATGTGTCGTATTTCAGGTACCTCGTGTGTCGTAG
1 CAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCGTAG
* **
9000042 CAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGTTT
1 CAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGTAG
* * *
9000084 TAGGCACTTTATGTGTCGTAT
1 CAGGCACCTCATGTGTCGTAT
9000105 ACTGATCAGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 36 0.68
44 17 0.32
ACGTcount: A:0.15, C:0.22, G:0.27, T:0.36
Consensus pattern (42 bp):
CAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCGTAG
Found at i:9002286 original size:22 final size:21
Alignment explanation
Indices: 9002233--9002294 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
9002223 GGTGGAAGTG
* *
9002233 TGAGCAAATTATCTGCATCGT
1 TGAGCAATTTATCTGCACCGT
***
9002254 TGAGTGGTTTATCTGCACCGTT
1 TGAGCAATTTATCTGCACCG-T
*
9002276 TGAGCAATTTATCTACACC
1 TGAGCAATTTATCTGCACC
9002295 ATTTAGTGGT
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
21 15 0.48
22 16 0.52
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (21 bp):
TGAGCAATTTATCTGCACCGT
Found at i:9002309 original size:21 final size:22
Alignment explanation
Indices: 9002253--9002309 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
9002243 ATCTGCATCG
* *
9002253 TTGAGTGGTTTATCTGCACCGT
1 TTGAGTGGTTTATCTACACCAT
***
9002275 TTGAGCAATTTATCTACACCAT
1 TTGAGTGGTTTATCTACACCAT
9002297 TT-AGTGGTTTATC
1 TTGAGTGGTTTATC
9002310 CATACCGTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (22 bp):
TTGAGTGGTTTATCTACACCAT
Found at i:9002317 original size:43 final size:43
Alignment explanation
Indices: 9002233--9002317 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 43
9002223 GGTGGAAGTG
* * * **
9002233 TGAGCAAATTATCTGCATCGTTGAGTGGTTTATCTGCACCGTT
1 TGAGCAAATTATCTACACCATTGAGTGGTTTATCCACACCGTT
* * *
9002276 TGAGCAATTTATCTACACCATTTAGTGGTTTATCCATACCGT
1 TGAGCAAATTATCTACACCATTGAGTGGTTTATCCACACCGT
9002318 ATAAGCAGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.38
Consensus pattern (43 bp):
TGAGCAAATTATCTACACCATTGAGTGGTTTATCCACACCGTT
Found at i:9005437 original size:20 final size:21
Alignment explanation
Indices: 9005399--9005438 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9005389 AAAAGAACAT
*
9005399 ATTATTATTATTAGGTTTTTA
1 ATTATTATTATTAAGTTTTTA
9005420 ATTA-TATTATTAA-TTTTTA
1 ATTATTATTATTAAGTTTTTA
9005439 TCATATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 8 0.44
21 4 0.22
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
ATTATTATTATTAAGTTTTTA
Found at i:9005444 original size:18 final size:20
Alignment explanation
Indices: 9005404--9005444 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
9005394 AACATATTAT
* *
9005404 TATTATTAGGTTTTTAATTA
1 TATTATTAGATTTTTAATCA
9005424 TATTATTA-ATTTTT-ATCA
1 TATTATTAGATTTTTAATCA
9005442 TAT
1 TAT
9005445 AAAAACAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTATTAGATTTTTAATCA
Found at i:9005533 original size:31 final size:31
Alignment explanation
Indices: 9005491--9005558 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
9005481 ATATGATTTT
**
9005491 ATTAAA-ATTAATGGATAATTAAAAACTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
*
9005521 ATTAAATATTAATAAATAATTAAAAATTAAA
1 ATTAAATATTAATAAATAATTAAAAACTAAA
9005552 A-TAAATA
1 ATTAAATA
9005559 GAAAAATATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 12 0.35
31 22 0.65
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (31 bp):
ATTAAATATTAATAAATAATTAAAAACTAAA
Found at i:9007073 original size:41 final size:41
Alignment explanation
Indices: 9007028--9007115 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 41
9007018 GAGATCGAGG
* * * *
9007028 TAGCTTCAGTTGTGTAATGCACTTAGTGTGCGAGATTATAA
1 TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
*
9007069 TAGCTTCGGCTATGTAATGCACTTAGTATGCAAGATTATAA
1 TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
9007110 TAGCTT
1 TAGCTT
9007116 TGGCTATGCT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (41 bp):
TAGCTTCAGCTATGTAATGCACTTAGTATGCAAGATTATAA
Found at i:9007121 original size:41 final size:41
Alignment explanation
Indices: 9007040--9007140 Score: 141
Period size: 41 Copynumber: 2.4 Consensus size: 41
9007030 GCTTCAGTTG
* *
9007040 TGTAATGCACTTAGTGTGCGAGATTATAATAGCTTCGGCTA
1 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
*
9007081 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTTGGCTA
1 TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
*
9007122 TGCT-TTGGCACTTAGTATG
1 TG-TAAT-GCACTTAGTATG
9007141 TGAGATATCT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
41 41 0.76
42 13 0.24
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.37
Consensus pattern (41 bp):
TGTAATGCACTTAGTATGCAAGATTATAATAGCTTCGGCTA
Found at i:9009055 original size:19 final size:23
Alignment explanation
Indices: 9009031--9009079 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 23
9009021 AAGTTAAATA
9009031 AATAAATAATA-TT-TT-GGTT-
1 AATAAATAATAGTTATTAGGTTG
*
9009050 AATAAAAAATAGTTATTAGGTTG
1 AATAAATAATAGTTATTAGGTTG
9009073 AATAAAT
1 AATAAAT
9009080 TATAAACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.42
20 2 0.08
21 2 0.08
22 4 0.17
23 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (23 bp):
AATAAATAATAGTTATTAGGTTG
Found at i:9013990 original size:13 final size:14
Alignment explanation
Indices: 9013972--9014000 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9013962 TAAAGACTTG
9013972 ATATG-ATTAACCA
1 ATATGAATTAACCA
9013985 ATATGAATTAACCA
1 ATATGAATTAACCA
9013999 AT
1 AT
9014001 GTCACCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
ATATGAATTAACCA
Found at i:9025541 original size:16 final size:16
Alignment explanation
Indices: 9025520--9025562 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
9025510 TGAGAAACTA
* *
9025520 TTAAAATATATATTTT
1 TTAAAAAATAAATTTT
9025536 TTAAAAAATAAATTTT
1 TTAAAAAATAAATTTT
* *
9025552 ATAATAAATAA
1 TTAAAAAATAA
9025563 TTGTAGTGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAAAATAAATTTT
Found at i:9026385 original size:28 final size:28
Alignment explanation
Indices: 9026353--9026406 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
9026343 CTAAAAAATT
* *
9026353 ATTAATAATATTATTTAAATTATAATAC
1 ATTAATAATAATATTTAAACTATAATAC
*
9026381 ATTAATATTAATATTTAAACTATAAT
1 ATTAATAATAATATTTAAACTATAAT
9026407 GAATTTTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (28 bp):
ATTAATAATAATATTTAAACTATAATAC
Found at i:9036608 original size:32 final size:31
Alignment explanation
Indices: 9036561--9036641 Score: 90
Period size: 32 Copynumber: 2.6 Consensus size: 31
9036551 GAAATTTTAG
*
9036561 TTTGTTGGATTTTGAAATTATCATGTCTTAAA
1 TTTGTTGGATATTGAAATTATCATGT-TTAAA
* * * *
9036593 TTTGTTAGATATTGAATTTATTATGTTTAAG
1 TTTGTTGGATATTGAAATTATCATGTTTAAA
* *
9036624 CTTATTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
9036642 GATTGACAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 18 0.45
32 22 0.55
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.51
Consensus pattern (31 bp):
TTTGTTGGATATTGAAATTATCATGTTTAAA
Found at i:9037676 original size:25 final size:25
Alignment explanation
Indices: 9037599--9037677 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
9037589 TGTGGTGTAA
* *
9037599 TATTAGTTATGCACTTGGATAATAT
1 TATTAATTATGCATTTGGATAATAT
* * * *
9037624 TGTT-ATTAT-CATGTGG-T-GTAC
1 TATTAATTATGCATTTGGATAATAT
*
9037645 TACTAATTATGCATTTGGATAATAT
1 TATTAATTATGCATTTGGATAATAT
9037670 TATTAATT
1 TATTAATT
9037678 TCTAATATTA
Statistics
Matches: 38, Mismatches: 12, Indels: 8
0.66 0.21 0.14
Matches are distributed among these distances:
21 4 0.11
22 6 0.16
23 11 0.29
24 5 0.13
25 12 0.32
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (25 bp):
TATTAATTATGCATTTGGATAATAT
Found at i:9037999 original size:20 final size:19
Alignment explanation
Indices: 9037955--9038000 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
9037945 CATCCTAACA
*
9037955 CCAGAAAAGTAAATTATTT
1 CCAGAAAAGTAAATCATTT
*
9037974 CTAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCA-TTT
9037994 CCAGAAA
1 CCAGAAA
9038001 TTATTTTTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:9038539 original size:152 final size:153
Alignment explanation
Indices: 9038306--9038615 Score: 550
Period size: 152 Copynumber: 2.0 Consensus size: 153
9038296 AAATTTAAAA
9038306 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
1 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
* *
9038371 TGGTTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGTCCCGTAATTATTTTATTTCTTGAGC
66 TGGTTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGTCCCGTAATTATTTTACTTCTTGAAC
9038436 TAATATTACCATTGA-CTTTTTT
131 TAATATTACCATTGATCTTTTTT
*
9038458 ATATGCCTTTTCGAAATAATTAGAGATATTGTTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
1 ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
* * *
9038523 TGGTTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGTTCCTTAATTCTTTTACTTCTTGAAC
66 TGGTTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGTCCCGTAATTATTTTACTTCTTGAAC
*
9038588 TAATATTACCATTGATTTTTTTT
131 TAATATTACCATTGATCTTTTTT
9038611 ATATG
1 ATATG
9038616 TCAAATCTAG
Statistics
Matches: 150, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
152 139 0.93
153 11 0.07
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.49
Consensus pattern (153 bp):
ATATGCCTTTTCGAAATAATTAGAGATATTATTGTCTCATCGTTTTTTCACTTTCTTCTATTCTA
TGGTTTCTCCATAGTATTTTGACCAATGAAATGTGCTTGTCCCGTAATTATTTTACTTCTTGAAC
TAATATTACCATTGATCTTTTTT
Found at i:9046221 original size:19 final size:20
Alignment explanation
Indices: 9046197--9046237 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
9046187 TTATTATTAA
9046197 AAAATATAT-TTTTAGAAAT
1 AAAATATATATTTTAGAAAT
* *
9046216 AAAATATTTATTTTAGACAT
1 AAAATATATATTTTAGAAAT
9046236 AA
1 AA
9046238 TGTTATAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (20 bp):
AAAATATATATTTTAGAAAT
Found at i:9050148 original size:15 final size:15
Alignment explanation
Indices: 9050130--9050173 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
9050120 CTACTGCTGC
9050130 TGTCCAAACTGTTTT
1 TGTCCAAACTGTTTT
9050145 TGTCCAAACTGTTTT
1 TGTCCAAACTGTTTT
*
9050160 TGTCCAAGCTGTTT
1 TGTCCAAACTGTTT
9050174 ATTACCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (15 bp):
TGTCCAAACTGTTTT
Found at i:9050286 original size:28 final size:28
Alignment explanation
Indices: 9050249--9050302 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
9050239 TTGAGCTGAT
*
9050249 TTTTCTCAATTAACTTTTTATTCTATGA
1 TTTTCTCAATTAACATTTTATTCTATGA
9050277 TTTTCTCAATTAACATTTTATTCTAT
1 TTTTCTCAATTAACATTTTATTCTAT
9050303 CACCTTAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.02, T:0.57
Consensus pattern (28 bp):
TTTTCTCAATTAACATTTTATTCTATGA
Found at i:9062779 original size:48 final size:46
Alignment explanation
Indices: 9062725--9062844 Score: 122
Period size: 48 Copynumber: 2.6 Consensus size: 46
9062715 TCACAAAGAA
*
9062725 CCATATCGGGAAGCTCACGAAGAGCCTATCGGGAAGCTC-C-GGATAG
1 CCATATCGGGAAGCTCACGAAGAGCCTACCGGGAAGCTCACAGG--AG
* * *
9062771 CCATATATCGGGAAGTTCAAG-CGAGCACTACCGGGAAGCTCACAAGGAG
1 CC--ATATCGGGAAGCTCACGAAGAGC-CTACCGGGAAGCTCAC-AGGAG
9062820 CC-TATCGGGAAGCTCACGAAGAGCC
1 CCATATCGGGAAGCTCACGAAGAGCC
9062845 ATATATCGGG
Statistics
Matches: 60, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
46 17 0.28
47 8 0.13
48 28 0.47
49 5 0.08
51 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.29, T:0.14
Consensus pattern (46 bp):
CCATATCGGGAAGCTCACGAAGAGCCTACCGGGAAGCTCACAGGAG
Found at i:9062785 original size:25 final size:24
Alignment explanation
Indices: 9062715--9062848 Score: 118
Period size: 23 Copynumber: 5.7 Consensus size: 24
9062705 ATCGAGTAGT
* *
9062715 TCACAAAGAACCATATCGGGAAGC
1 TCACGAAGAGCCATATCGGGAAGC
9062739 TCACGAAGAGCC-TATCGGGAAGC
1 TCACGAAGAGCCATATCGGGAAGC
* * *
9062762 TC-CGGATAGCCATATATCGGGAAGT
1 TCACGAAGAGCC--ATATCGGGAAGC
* * *
9062787 TCAAG-CGAG-CACTACCGGGAAGC
1 TCACGAAGAGCCA-TATCGGGAAGC
9062810 TCAC-AAGGAGCC-TATCGGGAAGC
1 TCACGAA-GAGCCATATCGGGAAGC
9062833 TCACGAAGAGCCATAT
1 TCACGAAGAGCCATAT
9062849 ATCGGGACAC
Statistics
Matches: 87, Mismatches: 13, Indels: 20
0.73 0.11 0.17
Matches are distributed among these distances:
22 8 0.09
23 44 0.51
24 19 0.22
25 15 0.17
26 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.27, T:0.15
Consensus pattern (24 bp):
TCACGAAGAGCCATATCGGGAAGC
Found at i:9065007 original size:3 final size:3
Alignment explanation
Indices: 9064993--9065041 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
9064983 TTTTATACTA
*
9064993 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9065036 AA- AAT A
1 AAT AAT A
9065042 TCTCATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:9065015 original size:11 final size:11
Alignment explanation
Indices: 9064999--9065037 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
9064989 ACTAAATAAT
9064999 TAATAATAAAA
1 TAATAATAAAA
*
9065010 TAATAATGAAA
1 TAATAATAAAA
9065021 TAATAATAAAA
1 TAATAATAAAA
9065032 TAATAA
1 TAATAA
9065038 AATATCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:9065024 original size:19 final size:19
Alignment explanation
Indices: 9065000--9065041 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9064990 CTAAATAATT
*
9065000 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
9065019 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
9065038 AATA
1 AATA
9065042 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:9065079 original size:18 final size:20
Alignment explanation
Indices: 9065027--9065079 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
9065017 GAAATAATAA
* *
9065027 TAAAATAATAAAATATCTCAT
1 TAAAATAAT-ATATATCTAAT
9065048 TAAAATAATATATATCTAAT
1 TAAAATAATATATATCTAAT
9065068 T-AAATAAT-TATA
1 TAAAATAATATATA
9065080 AAATATTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 4 0.13
19 7 0.23
20 10 0.33
21 9 0.30
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATATATATCTAAT
Found at i:9066976 original size:15 final size:15
Alignment explanation
Indices: 9066956--9066984 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9066946 ATCTGAGAGT
9066956 TGGTTCCCAAGCCAG
1 TGGTTCCCAAGCCAG
9066971 TGGTTCCCAAGCCA
1 TGGTTCCCAAGCCA
9066985 ATCCACTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.34, G:0.24, T:0.21
Consensus pattern (15 bp):
TGGTTCCCAAGCCAG
Found at i:9068326 original size:14 final size:14
Alignment explanation
Indices: 9068288--9068330 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
9068278 TTGCCTTGCA
9068288 AATTTTAAAACATT-
1 AATTTTAAAA-ATTC
*
9068302 ATTTTTCAAAAATTC
1 AATTTT-AAAAATTC
9068317 AATTTTAAAAATTC
1 AATTTTAAAAATTC
9068331 GTAGCGGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (14 bp):
AATTTTAAAAATTC
Found at i:9069930 original size:20 final size:21
Alignment explanation
Indices: 9069887--9069931 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
9069877 TATTTATATC
* * *
9069887 AAAAAAAGAGAAGAAATGAGA
1 AAAAAAAAAGAAGAAAAGACA
9069908 AAAAAAAAAG-AGAAAAGACA
1 AAAAAAAAAGAAGAAAAGACA
9069928 AAAA
1 AAAA
9069932 GATTAGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAGAAAAGACA
Found at i:9070004 original size:12 final size:12
Alignment explanation
Indices: 9069987--9070013 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9069977 GTACAATGTT
9069987 GTTTTCATGGTG
1 GTTTTCATGGTG
9069999 GTTTTCATGGTG
1 GTTTTCATGGTG
9070011 GTT
1 GTT
9070014 ATAGGCGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.33, T:0.52
Consensus pattern (12 bp):
GTTTTCATGGTG
Found at i:9072435 original size:49 final size:48
Alignment explanation
Indices: 9072318--9072450 Score: 173
Period size: 48 Copynumber: 2.8 Consensus size: 48
9072308 ACACAAATAA
* *
9072318 AATATATTACCATCATGGATGGCAT-GACAATGATGGTTCATTCTATTC
1 AATATATTACCATCCTGAATGGC-TCGACAATGATGGTTCATTCTATTC
9072366 AATATATTACCAT-CTCGAATGGCTCGACAATGATGGTTCATTCTATTTC
1 AATATATTACCATCCT-GAATGGCTCGACAATGATGGTTCATTCTA-TTC
* *
9072415 AATAT-TCTACCATCCTGAATGGCCCGACAACGATGG
1 AATATAT-TACCATCCTGAATGGCTCGACAATGATGG
9072451 CTATCATTAT
Statistics
Matches: 76, Mismatches: 4, Indels: 9
0.85 0.04 0.10
Matches are distributed among these distances:
47 2 0.03
48 40 0.53
49 32 0.42
50 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (48 bp):
AATATATTACCATCCTGAATGGCTCGACAATGATGGTTCATTCTATTC
Found at i:9090937 original size:19 final size:19
Alignment explanation
Indices: 9090896--9090938 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
9090886 CAAGCCAAAT
* ** *
9090896 TATTTTATAAAATTATTAT
1 TATTTTAAAAAATTAAAAA
9090915 TATTTTAAAAAATTAAAAA
1 TATTTTAAAAAATTAAAAA
9090934 TATTT
1 TATTT
9090939 AATAGTCATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTTAAAAAATTAAAAA
Found at i:9092789 original size:30 final size:30
Alignment explanation
Indices: 9092754--9092812 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
9092744 AGCAAAAAAC
9092754 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
1 TCTCAAATTGCTCCCTAAATTTCTCAAAGT
* *
9092784 TCTCAAATTTCTCCTTAAATTTCTCAAAG
1 TCTCAAATTGCTCCCTAAATTTCTCAAAG
9092813 CTCTTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
TCTCAAATTGCTCCCTAAATTTCTCAAAGT
Found at i:9094565 original size:18 final size:18
Alignment explanation
Indices: 9094542--9094584 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
9094532 TGCTAGGTGC
* *
9094542 GTATCCTAGCCTTTATAT
1 GTATCCTAACCCTTATAT
9094560 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
9094578 GTTTCCT
1 GTATCCT
9094585 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:9098234 original size:126 final size:125
Alignment explanation
Indices: 9098041--9098561 Score: 670
Period size: 126 Copynumber: 4.1 Consensus size: 125
9098031 AGCCAAACAT
* * * *
9098041 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-CTTTTTTCA-TAATTTTGCTGACAGTGCAT
* * * * *
9098106 CCTGCTTAAAGCATTATGGGCACTATTTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTTTAG
64 CCTGCTTAAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
* * * * *
9098168 TAACTACTATAGAAAAAGAGCGTCTATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGTATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATC
* * *
9098233 CTACTTAAAGCGTTTTTTACACTATTTTTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
* * *
9098294 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCTTCAATTTTGTTGGCAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATC
* * * * *
9098359 CTGCTTGAAGCGTTTTTGACACTATCTGTTCAGAACTATTTTTTCAAAATTATTTTTT-AG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
* * *
9098419 GAACTACTGTAGAAAACGAGCGTCCATGTGGGAGCTTTTTTCAATAATTTTACTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTC-ATAATTTTGCTGACAGTGCATC
* * * *
9098484 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAACTGCCTTTTCAAAATTATTTTTTCAG
65 CTGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
9098545 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
9098562 AACCAAGATC
Statistics
Matches: 345, Mismatches: 45, Indels: 9
0.86 0.11 0.02
Matches are distributed among these distances:
125 116 0.34
126 202 0.59
127 27 0.08
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCATAATTTTGCTGACAGTGCATCC
TGCTTAAAGCGTTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
Found at i:9098497 original size:251 final size:253
Alignment explanation
Indices: 9098041--9098561 Score: 705
Period size: 251 Copynumber: 2.1 Consensus size: 253
9098031 AGCCAAACAT
* *
9098041 GAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGACAGTGCAT
* * * *
9098106 CCTGCTTAAAGCATTATGGGCACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTTAGTAA
66 CCTGCTTAAAGCATTATGGACACTATCTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGGAA
* * *
9098171 CTACTATAGAAAAAGAGCGTCTATGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGTATCCTA
131 CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTACTGACAGTGCATCCTA
* *
9098236 CTTAAAGCGTTTTTTACACTATTT-TTTCAGAAAC-GTCTTCTCAAAATTATTTTTTCAG
196 CTTAAAGCGTTTTTGACACTATTTGTTT-AG-AACTGCCTTCTCAAAATTATTTTTTCAG
* * * * *
9098294 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAG-CTTTTTTC-TTCAATTTTGTTGGCAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGT-AATTTTGCTGACAGTGCA
* * * * * *
9098357 TCCTGCTTGAAGCGTTTTTGACACTATCTGTTCAG-AACTATTTTTTCAAAATTA-TTTTTTAGG
65 TCCTGCTTAAAGCATTATGGACACTATCTGTTCAGAAAC-ATCTTCTCAAAATTATTTTTTTAGG
* *
9098420 AACTACTGTAGAAAACGAGCGTCCATGTGGGAGCTTTTTTCAAT-AATTTTACTGACAGTGCATC
129 AACTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTC-ATCAATTTTACTGACAGTGCATC
* * *
9098484 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAACTGCCTTTTCAAAATTATTTTTTCAG
193 CTACTTAAAGCGTTTTTGACACTATTTGTTTAGAACTGCCTTCTCAAAATTATTTTTTCAG
9098545 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
9098562 AACCAAGATC
Statistics
Matches: 236, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
250 3 0.01
251 133 0.56
252 69 0.29
253 31 0.13
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (253 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGAGAGCCTTTTTTCAGTAATTTTGCTGACAGTGCAT
CCTGCTTAAAGCATTATGGACACTATCTGTTCAGAAACATCTTCTCAAAATTATTTTTTTAGGAA
CTACTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCATCAATTTTACTGACAGTGCATCCTA
CTTAAAGCGTTTTTGACACTATTTGTTTAGAACTGCCTTCTCAAAATTATTTTTTCAG
Found at i:9098679 original size:34 final size:33
Alignment explanation
Indices: 9098623--9098764 Score: 119
Period size: 34 Copynumber: 4.2 Consensus size: 33
9098613 CCAATATTAT
* *
9098623 TTTAAAAAAATTAAACCTAAATTTAATTAATTT-
1 TTTAAAAACACTAAACC-AAATTTAATTAATTTA
9098656 TCTTAAAAACACTAAATCCAAATTTAATTAATTTA
1 T-TTAAAAACACTAAA-CCAAATTTAATTAATTTA
* *
9098691 TTT-AAAACCCTTAAACCCTAATTTAATTAATTTA
1 TTTAAAAACAC-TAAA-CCAAATTTAATTAATTTA
*** * * * *
9098725 TTTAACCCCCCGAACCCTAATTTAATTAATTT-
1 TTTAAAAACACTAAACCAAATTTAATTAATTTA
9098757 TTTAAAAA
1 TTTAAAAA
9098765 GAACACTAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
32 5 0.05
33 24 0.26
34 55 0.60
35 7 0.08
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.39
Consensus pattern (33 bp):
TTTAAAAACACTAAACCAAATTTAATTAATTTA
Found at i:9098746 original size:33 final size:33
Alignment explanation
Indices: 9098676--9098762 Score: 122
Period size: 33 Copynumber: 2.6 Consensus size: 33
9098666 ACTAAATCCA
**
9098676 AATTTAATTAATTTATTTAAAACCCTTAAACCCT
1 AATTTAATTAATTTATTT-AAACCCCCAAACCCT
* *
9098710 AATTTAATTAATTTATTTAACCCCCCGAACCCT
1 AATTTAATTAATTTATTTAAACCCCCAAACCCT
9098743 AATTTAATTAATTT-TTTAAA
1 AATTTAATTAATTTATTTAAA
9098763 AAGAACACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 5 0.10
33 25 0.52
34 18 0.38
ACGTcount: A:0.39, C:0.17, G:0.01, T:0.43
Consensus pattern (33 bp):
AATTTAATTAATTTATTTAAACCCCCAAACCCT
Found at i:9099312 original size:50 final size:50
Alignment explanation
Indices: 9099212--9099304 Score: 127
Period size: 50 Copynumber: 1.9 Consensus size: 50
9099202 AATTTATATT
* * **
9099212 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATCTAATGATTTTTA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
*
9099262 TCTAGTGATTTTAATTGTTATTTATAAATTTAT-TA-ATAATAAA
1 TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAA
9099305 CAATTTATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 5 0.13
49 2 0.05
50 32 0.82
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.53
Consensus pattern (50 bp):
TCTAGTGATTTTAATTGTTATTAATAAATTTATATATATAATAAAATTTA
Found at i:9122714 original size:17 final size:17
Alignment explanation
Indices: 9122694--9122726 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9122684 GTTGAGAAAG
*
9122694 TAATTTAATTAAAATTT
1 TAATTTAAATAAAATTT
9122711 TAATTTAAATAAAATT
1 TAATTTAAATAAAATT
9122727 AAATAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTTAAATAAAATTT
Found at i:9126993 original size:20 final size:19
Alignment explanation
Indices: 9126970--9127009 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9126960 TTTGTGTGCC
*
9126970 TAAATTAAATTTTTTATAAT
1 TAAA-TAAATATTTTATAAT
*
9126990 TAAATAACTATTTTATAAT
1 TAAATAAATATTTTATAAT
9127009 T
1 T
9127010 TACTCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TAAATAAATATTTTATAAT
Found at i:9127127 original size:6 final size:6
Alignment explanation
Indices: 9127116--9127167 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
9127106 AAATATATAA
* * *
9127116 AAAAAT AAAAAT AAAAAT AAAAAT --AAAT AAAAAT -TAAAT TAAATT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
9127161 AAAAAT A
1 AAAAAT A
9127168 TAATCTCTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
4 4 0.11
5 4 0.11
6 30 0.79
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:9127143 original size:16 final size:16
Alignment explanation
Indices: 9127106--9127167 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 16
9127096 TTGTAATTTT
*
9127106 AAATATATAAAAA-AA
1 AAATAAATAAAAATAA
*
9127121 TAA-AAATAAAAATAA
1 AAATAAATAAAAATAA
*
9127136 AAATAAATAAAAATTA
1 AAATAAATAAAAATAA
*
9127152 AATTAAATTAAAAATA
1 AAATAAA-TAAAAATA
9127168 TAATCTCTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 8 0.21
15 6 0.16
16 17 0.45
17 7 0.18
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATAAATAAAAATAA
Done.