Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 319 of 320
Found at i:102388015 original size:51 final size:51
Alignment explanation
Indices: 102387939--102388052 Score: 201
Period size: 51 Copynumber: 2.2 Consensus size: 51
102387929 AGTGACAACC
* *
102387939 GACAAGCGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
*
102387990 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
102388041 GACAAGTGATAA
1 GACAAGTGATAA
102388053 ATGTGATCAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (51 bp):
GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
Found at i:102391043 original size:51 final size:51
Alignment explanation
Indices: 102390848--102391059 Score: 204
Period size: 51 Copynumber: 4.1 Consensus size: 51
102390838 TATTTAAAAG
* *
102390848 AAAAAAAAATTGGTGCTGGCCTTGTAATGGTCGGTACCAATACGAGTATTTT
1 AAAAAAAAATTGGTGCTGGCCTTGTAATGGTCGGCACCAGTACGAGTA-TTT
* * *
102390900 AAAAAATATATATTTTTGGTGTTGGCCTTGTAATGGCCGGCACCAGTACAAGTATTT
1 AAAAAA-A-A-A---TTGGTGCTGGCCTTGTAATGGTCGGCACCAGTACGAGTATTT
* * *
102390957 -AAAAAAAA-T--T--TGGCTTTCTAATGGTCGGCACTAGTACGAGTATTT
1 AAAAAAAAATTGGTGCTGGCCTTGTAATGGTCGGCACCAGTACGAGTATTT
* **
102391002 AAAAAAAAATTGGTGCTGGCCTTATAATGG-CTGGCATTAGTACGAGTATTT
1 AAAAAAAAATTGGTGCTGGCCTTGTAATGGTC-GGCACCAGTACGAGTATTT
102391053 AAAAAAA
1 AAAAAAA
102391060 TGGTTTTAGC
Statistics
Matches: 134, Mismatches: 13, Indels: 27
0.77 0.07 0.16
Matches are distributed among these distances:
45 30 0.22
46 8 0.06
47 2 0.01
49 2 0.01
50 1 0.01
51 37 0.28
52 6 0.04
53 2 0.01
54 2 0.01
55 2 0.01
56 5 0.04
57 3 0.02
58 34 0.25
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (51 bp):
AAAAAAAAATTGGTGCTGGCCTTGTAATGGTCGGCACCAGTACGAGTATTT
Found at i:102391092 original size:48 final size:48
Alignment explanation
Indices: 102390916--102391094 Score: 175
Period size: 45 Copynumber: 3.7 Consensus size: 48
102390906 TATATATTTT
* * *
102390916 TGGTGTTGGCCTTGTAATGGCCGGCACCAGTACAAGTATTTAAAAAAA
1 TGGTTTTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAA
* * * *
102390964 ---ATTTGGCTTTCTAATGGTCGGCACTAGTACGAGTATTTAAAAAAAAA
1 TGGTTTTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTT--AAAAAAA
** * * **
102391011 TTGGTGCTGGCCTTATAATGGCTGGCATTAGTACGAGTATTTAAAAAAA
1 -TGGTTTTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAA
* *
102391060 TGGTTTTAGCCTTCTAATGGCCGACACCAGTACGA
1 TGGTTTTGGCCTTCTAATGGCCGGCACCAGTACGA
102391095 AAAAAATTTC
Statistics
Matches: 102, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
45 31 0.30
47 7 0.07
48 27 0.26
49 7 0.07
51 30 0.29
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (48 bp):
TGGTTTTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAA
Found at i:102391137 original size:102 final size:104
Alignment explanation
Indices: 102391011--102391217 Score: 301
Period size: 110 Copynumber: 2.0 Consensus size: 104
102391001 TAAAAAAAAA
* *
102391011 TTGGTGCTGGCCTTATAATGGCTGGCATTAGTACGAGTA-TTTAAAAAAA-TGGTTTTAGCCTTC
1 TTGGTGCTGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTAAAAAAATTGGTTTTAGCCTTC
*
102391074 TAATGGCCGACACCAGTACGAAAAAAATTTCAAAATCTT
66 TAATGGCCGACACCAGTACGAAAAAAAATTCAAAATCTT
* *
102391113 TTGGTGCTGGTCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAATTGGTTTTG
1 TTGGTGCTGGCCTTATAATAGCTGGCACTAGTACGAGTA------TTTTAAAAAAATTGGTTTTA
102391178 GCCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAA
60 GCCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAA
102391218 TTTTCTTGGT
Statistics
Matches: 92, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
102 36 0.39
109 10 0.11
110 46 0.50
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (104 bp):
TTGGTGCTGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTAAAAAAATTGGTTTTAGCCTTC
TAATGGCCGACACCAGTACGAAAAAAAATTCAAAATCTT
Found at i:102391249 original size:110 final size:109
Alignment explanation
Indices: 102391011--102391250 Score: 298
Period size: 110 Copynumber: 2.3 Consensus size: 109
102391001 TAAAAAAAAA
* * *
102391011 TTGGTGCTGGCCTTATAATGGCTGGCATTAGTACGAGTA-------TTTAAAAAAATGGTTTTAG
1 TTGGTGCAGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAATGGTTTTAG
*
102391069 CCTTCTAATGGCCGACACCAGTACGAAAAAAATTTCAAAATCTT
66 CCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAAATCTT
* * *
102391113 TTGGTGCTGGTCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAATTGGTTTTG
1 TTGGTGCAGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAA-TGGTTTTA
*
102391178 GCCTTCTAATGGCCGACACCAGTACGAAAAAAAATTC-AAATTTT
65 GCCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAAATCTT
* * * *
102391222 CTTGGTGGAGGCCTTCTAATGGTTGGCAC
1 -TTGGTGCAGGCCTTATAATAGCTGGCAC
102391251 CAAAACTTAT
Statistics
Matches: 117, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
102 36 0.31
109 16 0.14
110 65 0.56
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (109 bp):
TTGGTGCAGGCCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAATGGTTTTAG
CCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAAATCTT
Found at i:102391972 original size:54 final size:51
Alignment explanation
Indices: 102391860--102391995 Score: 150
Period size: 54 Copynumber: 2.6 Consensus size: 51
102391850 TGGAGTTGGC
* **
102391860 CCTTTAATGGCCGGCACCAGTACGAATA-TT-TTAATTTTTTTTGTGCTGG
1 CCTTTAATGGCCGGCACCAGTACGAGTATTTATTAATTTTTTTTGTGCTAA
** **
102391909 CCTTGTAATGGCCGGCACCAGTACGAGTATTTATTTTTTATTTTTTGGTTTTAA
1 CCTT-TAATGGCCGGCACCAGTACGAGTATTTATTAATT-TTTTTT-GTGCTAA
*
102391963 CCTTCTAATGACCGGCACCAGTACGAGTATTTA
1 CCTT-TAATGGCCGGCACCAGTACGAGTATTTA
102391996 AAAAAAAATA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 4 0.05
50 23 0.32
51 2 0.03
52 4 0.05
53 6 0.08
54 34 0.47
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (51 bp):
CCTTTAATGGCCGGCACCAGTACGAGTATTTATTAATTTTTTTTGTGCTAA
Found at i:102392003 original size:792 final size:776
Alignment explanation
Indices: 102390524--102391988 Score: 1703
Period size: 793 Copynumber: 1.9 Consensus size: 776
102390514 ATTTTTTTTT
*
102390524 GAGAGGCATTAAAATGAGAGTGTTTTGTAGTATATCATAAGATGAGGGCTATTTTACCAAACTGA
1 GAGAGGCATCAAAATGAGAGTGTTTTGTAGTATATCATAAGATGAGGGCTATTTTACCAAACTGA
* * *
102390589 CCCAAAAATTTTAATATTTATAAAAATGACCCAGGTTCAAAAACAATCACCAAAATGACCTGAAA
66 CCAAAAAATTTTAATATTTACAAAAATGACCCAGGTTCAAAAACAATCACAAAAATGACCTGAAA
*
102390654 TGAACAGTAGAATGGGGTTTTGGCCTTTAATAGCAGGCACCACCTCGTATTTTGACTCCATGATT
131 TGAACAGTAGAATGGGGTTTTGGCCTTTAATAGCAGGCACCACCTCGTATTTTGACCCCATGATT
*
102390719 ACCTGATGATTATGTCAGGCTTTAAAAAATTGATTTTTTTGGTTTTGGCCTTCCAATTGCCAGCA
196 ACCTGATGATTATGTCAGGCTTTAAAAAATTGATTTTTTTGGTTTTGGCCTTCCAATAGCCAGCA
* *
102390784 CCAATATATATATATATTTTTAAATCGTATCATACTGATATACAAAAATAAGAGTATTTAAAAGA
261 CCAATAGATATATATATTTTAAAATCGTATCATACTGATATACAAAAATAAGAGTATTTAAAAGA
** * * *
102390849 AAAAAAAATTGGTGCTGGCCTTGTAATGGTCGGTACCAATACGAGTATTTTAAAAAATATATATT
326 AAAAAAAATTGGTGCTGGCCTTGTAATGACCGGCACCAATACCACTA-TTTAAAAAATATATATT
* *
102390914 TTTGGTGTTGGCCTTGTAATGGCCGGCACCAGTACAAGTATTTAAAAAAAATTTGGCTTTCTAAT
390 TTTGGTGTTGGCCTTCTAATGGCCGGCACCAGTACAAGAATTTAAAAAAAATTTGG-----T--T
* * ** **
102390979 GGTCGGCACTAGTACGAGTATTTAAAAAAAAATTGGTGCTGGCCTTATAATGGCTGGCATTAGTA
448 GGCCGGCACTA-T---A-TATTTAAAAAAAAATTAGTGCTGGCCTTATAATGGCCAGCACCAGTA
*
102391044 CGAGTATTTAAAAAAATGGTTTTAGCCTTCTAATGGCCGACACCAGTACGAAAAAAATTTCAAAA
508 CGAGTATTTAAAAAAATAGTTTTAGCCTTCTAATGGCCGACACCAGTACG--AAAAATTTCAAAA
* * * *
102391109 TCTTTTGGTGCTGGTCTTATAATAGCTGGCACTAGTACGAGTATTTTTTTTTTAAAAAAATTGGT
571 TCTTTTGGTGCTGGCCTTATAATAGCCGGCACCAGTACGAGTATTTATTTTTT-AAAAAATTGGT
** *
102391174 TTTGGCCTTCTAATGGCCGACACCAGTACGAAAAAAAATTCAAATTTTCTTGGTGGAGGCCTTCT
635 TTTAACCTTCTAATGACCGACACCAGTACGAAAAAAAATTCAAATTTTCTTGGTGGAGGCCTTCT
102391239 AATGGTTGGCACCAAAACTTATATATAGTGGGTGGTTTGGGGTCTGATAGTGTAAATGGATAAAA
700 AATGGTTGGCACCAAAACTTATATATAGTGGGTGGTTTGGGGTCTGATAGTGTAAATGGATAAAA
102391304 AAAAATTTTTGA
765 AAAAATTTTTGA
*
102391316 GAGAGGCATCAAAATGAGAGTGTTTTGTAGTATATCATCAA-ATGAGGGCTATTTTACCAAATTG
1 GAGAGGCATCAAAATGAGAGTGTTTTGTAGTATATCAT-AAGATGAGGGCTATTTTACCAAACTG
* * * * * *
102391380 ACCAAAAAAATTTTTATATTTGCAAAAATGACCTAGGTTCAAAAATAATTATAAAAATGACCTGA
65 ACC-AAAAAATTTTAATATTTACAAAAATGACCCAGGTTCAAAAACAATCACAAAAATGACCTGA
* * * *
102391445 AATGAACAGTAGAATGGGGTTTTGGCCTTCTAATGGCCGGTACCACCTCGTATTTTGACCCCCTG
129 AATGAACAGTAGAATGGGGTTTTGGCCTT-TAATAGCAGGCACCACCTCGTATTTTGACCCCATG
* * *
102391510 ATTGCCTGATGATTGTGTCAGGCTTTAAAAAATTGATTTTTTTTTTGTTTTGGCCTTCCAATAGC
193 ATTACCTGATGATTATGTCAGGCTTTAAAAAATTGA--TTTTTTTGGTTTTGGCCTTCCAATAGC
* *
102391575 CAGCACC-A-GGGTAT-T-T-TTTTAAAATCGTATCATACT-AGTATACAAAAATACA-AGTATT
256 CAGCACCAATAGATATATATATTTTAAAATCGTATCATACTGA-TATACAAAAATA-AGAGTATT
* * * **
102391633 T-TAA-AAAAAGAATTTGGTGCTGGCCTTGTAATGACCGGCACCAAACTACCACTA-TT-AAATT
319 TAAAAGAAAAAAAAATTGGTGCTGGCCTTGTAATGACCGGCACC-AA-TACCACTATTTAAAAAA
* * * * * * * *
102391694 TTTATTTTTTTTGTTTTGGCCTTCTAATGGTCGGCGCTAGTACGAGAATTTAAAAAAAAATTTGG
382 TATATATTTTTGGTGTTGGCCTTCTAATGGCCGGCACCAGTACAAGAATTT-AAAAAAAATTTGG
** *
102391759 -T-GCCGGC-CT-T-TATTTAAAAATAAAAAGTTTTCTTTTTAGTTTTGGCCTTCTAATGGCCAG
446 TTGGCCGGCACTATATATTT-AAAA-AAAAA---------TTAGTGCTGGCCTTATAATGGCCAG
* *
102391819 CACCAGTACGAGTATTTAAAAAAATAATTTTTGGAGTTGGCCCTT-TAATGGCCGGCACCAGTAC
500 CACCAGTACGAGTATTTAAAAAAAT-AGTTTT--A----G-CCTTCTAATGGCCGACACCAGTAC
* * * * * * *
102391883 G-AATATTT-TAATTTTTTTTGTGCTGGCCTTGTAATGGCCGGCACCAGTACGAGTATTTATTTT
557 GAAAAATTTCAAAATCTTTTGGTGCTGGCCTTATAATAGCCGGCACCAGTACGAGTATTTATTTT
**** *
102391946 TT-ATTTTTTGGTTTTAACCTTCTAATGACCGGCACCAGTACGA
622 TTAAAAAATTGGTTTTAACCTTCTAATGACCGACACCAGTACGA
102391989 GTATTTAAAA
Statistics
Matches: 569, Mismatches: 75, Indels: 66
0.80 0.11 0.09
Matches are distributed among these distances:
772 5 0.01
773 4 0.01
774 5 0.01
777 1 0.00
779 2 0.00
780 5 0.01
781 1 0.00
783 42 0.07
784 37 0.07
786 48 0.08
787 6 0.01
788 44 0.08
789 48 0.08
790 25 0.04
791 48 0.08
792 64 0.11
793 84 0.15
794 67 0.12
795 1 0.00
796 32 0.06
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (776 bp):
GAGAGGCATCAAAATGAGAGTGTTTTGTAGTATATCATAAGATGAGGGCTATTTTACCAAACTGA
CCAAAAAATTTTAATATTTACAAAAATGACCCAGGTTCAAAAACAATCACAAAAATGACCTGAAA
TGAACAGTAGAATGGGGTTTTGGCCTTTAATAGCAGGCACCACCTCGTATTTTGACCCCATGATT
ACCTGATGATTATGTCAGGCTTTAAAAAATTGATTTTTTTGGTTTTGGCCTTCCAATAGCCAGCA
CCAATAGATATATATATTTTAAAATCGTATCATACTGATATACAAAAATAAGAGTATTTAAAAGA
AAAAAAAATTGGTGCTGGCCTTGTAATGACCGGCACCAATACCACTATTTAAAAAATATATATTT
TTGGTGTTGGCCTTCTAATGGCCGGCACCAGTACAAGAATTTAAAAAAAATTTGGTTGGCCGGCA
CTATATATTTAAAAAAAAATTAGTGCTGGCCTTATAATGGCCAGCACCAGTACGAGTATTTAAAA
AAATAGTTTTAGCCTTCTAATGGCCGACACCAGTACGAAAAATTTCAAAATCTTTTGGTGCTGGC
CTTATAATAGCCGGCACCAGTACGAGTATTTATTTTTTAAAAAATTGGTTTTAACCTTCTAATGA
CCGACACCAGTACGAAAAAAAATTCAAATTTTCTTGGTGGAGGCCTTCTAATGGTTGGCACCAAA
ACTTATATATAGTGGGTGGTTTGGGGTCTGATAGTGTAAATGGATAAAAAAAAATTTTTGA
Found at i:102394934 original size:32 final size:33
Alignment explanation
Indices: 102394898--102395003 Score: 120
Period size: 32 Copynumber: 3.4 Consensus size: 33
102394888 ATACTGATAT
102394898 GGGCTA-GGCCCAGTATACTCTATTACTGTAAG
1 GGGCTATGGCCCAGTATACTCTATTACTGTAAG
* *
102394930 GGGCTATGGCCCAG-AT--T-GA-TACTG-ATAT
1 GGGCTATGGCCCAGTATACTCTATTACTGTA-AG
*
102394958 GGGCTA-GGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGTATACTCTATTACTGTAAG
102394990 GGGCTATGGCCCAG
1 GGGCTATGGCCCAG
102395004 ATTAATATTG
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
27 8 0.13
28 14 0.23
29 1 0.02
30 2 0.03
32 20 0.33
33 15 0.25
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (33 bp):
GGGCTATGGCCCAGTATACTCTATTACTGTAAG
Found at i:102394946 original size:60 final size:60
Alignment explanation
Indices: 102394870--102395032 Score: 290
Period size: 60 Copynumber: 2.7 Consensus size: 60
102394860 GACTTGTATA
102394870 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTATTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTATTACTGTAAG
*
102394930 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTGTTACTGTAAG
1 GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTATTACTGTAAG
* *
102394990 GGGCTATGGCCCAGATTAATATTGATATGGGCTAAGGCCCAGT
1 GGGCTATGGCCCAGATTGATACTGATATGGGCT-AGGCCCAGT
102395033 TAACACTAAA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
60 90 0.91
61 9 0.09
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (60 bp):
GGGCTATGGCCCAGATTGATACTGATATGGGCTAGGCCCAGTATACTCTATTACTGTAAG
Found at i:102394961 original size:28 final size:28
Alignment explanation
Indices: 102394870--102395031 Score: 125
Period size: 28 Copynumber: 5.5 Consensus size: 28
102394860 GACTTGTATA
102394870 GGGCTATGGCCCAGATTGATACTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
* *
102394898 GGGCTA-GGCCCAGTATACTCTATTACTG-TAAG
1 GGGCTATGGCCCAG-AT--T-GA-TACTGAT-AT
102394930 GGGCTATGGCCCAGATTGATACTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
* *
102394958 GGGCTA-GGCCCAGTATACTCTGTTACTG-TAAG
1 GGGCTATGGCCCAG---A-T-TGATACTGAT-AT
* *
102394990 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTATGGCCCAGATTGATACTGATAT
*
102395018 GGGCTAAGGCCCAG
1 GGGCTATGGCCCAG
102395032 TTAACACTAA
Statistics
Matches: 107, Mismatches: 11, Indels: 32
0.71 0.07 0.21
Matches are distributed among these distances:
27 14 0.13
28 39 0.36
29 4 0.04
30 4 0.04
31 4 0.04
32 28 0.26
33 14 0.13
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (28 bp):
GGGCTATGGCCCAGATTGATACTGATAT
Found at i:102396400 original size:17 final size:17
Alignment explanation
Indices: 102396380--102396430 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
102396370 TTAATATTTA
102396380 CAAAAATAACCCAAGTT
1 CAAAAATAACCCAAGTT
*
102396397 CAAAAACAA--C-A---
1 CAAAAATAACCCAAGTT
102396408 CAAAAATAACCCAAGTT
1 CAAAAATAACCCAAGTT
102396425 CAAAAA
1 CAAAAA
102396431 CAATCACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 12
0.65 0.05 0.30
Matches are distributed among these distances:
11 8 0.31
13 1 0.04
14 2 0.08
15 1 0.04
17 14 0.54
ACGTcount: A:0.61, C:0.24, G:0.04, T:0.12
Consensus pattern (17 bp):
CAAAAATAACCCAAGTT
Found at i:102396413 original size:29 final size:29
Alignment explanation
Indices: 102396379--102396443 Score: 123
Period size: 28 Copynumber: 2.3 Consensus size: 29
102396369 TTTAATATTT
102396379 ACAAAAATAACCCAAGTTCAAAAACAA-C
1 ACAAAAATAACCCAAGTTCAAAAACAATC
102396407 ACAAAAATAACCCAAGTTCAAAAACAATC
1 ACAAAAATAACCCAAGTTCAAAAACAATC
102396436 ACAAAAAT
1 ACAAAAAT
102396444 GACCTAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 27 0.75
29 9 0.25
ACGTcount: A:0.62, C:0.23, G:0.03, T:0.12
Consensus pattern (29 bp):
ACAAAAATAACCCAAGTTCAAAAACAATC
Found at i:102399182 original size:46 final size:48
Alignment explanation
Indices: 102399113--102399258 Score: 127
Period size: 53 Copynumber: 3.0 Consensus size: 48
102399103 CACATCACAC
** * *
102399113 ACCGAAGCCATAGCCTTGCCATGGTCTTACAC-GATTCACA-TATCAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACAGAATCACATTATCAT
* *
102399159 ACCGAAGCCATATCCCAGACATGGTCTTATACAGAATCACATTATCACATTAT
1 ACCGAAGCCATAGCCCAGACATGGTCTTACACAGAATCACATTAT--C---AT
* * * *
102399212 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAGTCACATTATCA
1 ACCGAAGCCATAGCCCAGAC-ATGGTCTTACACAGAATCACATTATCA
102399259 CATTGCAATG
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
46 27 0.33
47 7 0.09
48 4 0.05
50 1 0.01
51 1 0.01
52 1 0.01
53 41 0.50
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (48 bp):
ACCGAAGCCATAGCCCAGACATGGTCTTACACAGAATCACATTATCAT
Found at i:102399229 original size:53 final size:53
Alignment explanation
Indices: 102399148--102399293 Score: 177
Period size: 53 Copynumber: 2.7 Consensus size: 53
102399138 CTTACACGAT
* *
102399148 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACAGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACAGAATCACATTA
* *
102399203 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACAGAATCACATTA
** ** *
102399256 TCACATTGCAATGATGCCATAGCCCAGCTATCGTCTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTA
102399294 AACGGGCGCA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 73 0.90
54 1 0.01
55 6 0.07
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACAGAATCACATTA
Found at i:102401281 original size:18 final size:19
Alignment explanation
Indices: 102401249--102401299 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
102401239 CCTTCACTCT
* *
102401249 GTAACAATCAGTTATGC-A
1 GTAACAGTCAATTATGCAA
* *
102401267 GTAACAGTCATTTATTCAA
1 GTAACAGTCAATTATGCAA
102401286 G-AACAGTCAATTAT
1 GTAACAGTCAATTAT
102401300 TCCGTAGCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 26 0.93
19 2 0.07
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (19 bp):
GTAACAGTCAATTATGCAA
Found at i:102401506 original size:54 final size:51
Alignment explanation
Indices: 102401447--102401565 Score: 141
Period size: 51 Copynumber: 2.3 Consensus size: 51
102401437 CGATAACAGT
102401447 AACAGTAACAGTAGCAGT-AGCAGTACACAAAGTACCTCATCGGAACAAATCCGA
1 AACAGTAACAGTAGCAGTCA--AGT--ACAAAGTACCTCATCGGAACAAATCCGA
* * * * *
102401501 AACAGTAACAGTAACAGTCAAGTACAGAGTACCTCTTCGGAACGAATCCGG
1 AACAGTAACAGTAGCAGTCAAGTACAAAGTACCTCATCGGAACAAATCCGA
*
102401552 AACAGTCACAGTAG
1 AACAGTAACAGTAG
102401566 TCGACACATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
51 36 0.63
53 3 0.05
54 17 0.30
55 1 0.02
ACGTcount: A:0.40, C:0.24, G:0.20, T:0.16
Consensus pattern (51 bp):
AACAGTAACAGTAGCAGTCAAGTACAAAGTACCTCATCGGAACAAATCCGA
Found at i:102402926 original size:29 final size:27
Alignment explanation
Indices: 102402856--102402950 Score: 136
Period size: 27 Copynumber: 3.4 Consensus size: 27
102402846 TTGTCACATT
* *
102402856 TCACTTTGCCATATTTGGCACATTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
**
102402883 TCACTTTTTCATGTTTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
102402910 TTACACTTTGCCATGTTTGGCACACTTTA
1 -T-CACTTTGCCATGTTTGGCACACTTTA
102402939 TCACTTTGCCAT
1 TCACTTTGCCAT
102402951 AGTTCAACTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
27 34 0.57
28 2 0.03
29 24 0.40
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (27 bp):
TCACTTTGCCATGTTTGGCACACTTTA
Found at i:102405947 original size:28 final size:28
Alignment explanation
Indices: 102405895--102405977 Score: 130
Period size: 28 Copynumber: 2.9 Consensus size: 28
102405885 ACTTTGTGCT
102405895 ATTCTGGTGTGTTTTGGACGGATTATATA
1 ATTCTGGTGTGTTTTGGA-GGATTATATA
* *
102405924 ATTCTGGTGTGTTTGGGAGGATTATATG
1 ATTCTGGTGTGTTTTGGAGGATTATATA
*
102405952 ATACTGGTGTGTTTTGGAGGATTATA
1 ATTCTGGTGTGTTTTGGAGGATTATA
102405978 CTGGTGTGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.66
29 17 0.34
ACGTcount: A:0.20, C:0.05, G:0.31, T:0.43
Consensus pattern (28 bp):
ATTCTGGTGTGTTTTGGAGGATTATATA
Found at i:102405978 original size:23 final size:24
Alignment explanation
Indices: 102405898--102405991 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
102405888 TTGTGCTATT
102405898 CTGGTGTGTTTTGGACGGATTATATAA
1 CTGGTGTGTTTTGGA-GGA-TATAT-A
*
102405925 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
102405955 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
102405978 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
102405992 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 4 0.07
31 3 0.05
ACGTcount: A:0.17, C:0.05, G:0.34, T:0.44
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:102406212 original size:23 final size:23
Alignment explanation
Indices: 102406182--102406268 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 23
102406172 GCTTTACTGA
*
102406182 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
102406205 TCAGGCACCTTGTGTGTCGCA--
1 TCAGGCACCTTATGTGTCGTATT
* **
102406226 GCAGGCACCTCGTGTGTCG--TT
1 TCAGGCACCTTATGTGTCGTATT
102406247 T-AGGCA-CTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
102406268 T
1 T
102406269 TGATCAGGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
19 9 0.17
20 5 0.10
21 20 0.38
23 18 0.35
ACGTcount: A:0.15, C:0.22, G:0.26, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:102415254 original size:50 final size:51
Alignment explanation
Indices: 102415115--102415286 Score: 136
Period size: 50 Copynumber: 3.4 Consensus size: 51
102415105 GGTATACAAA
* * * * *
102415115 AATACGAGTATTTAAAAAAAATTAG-TGCTGGCATTGT-ATGGCCGGCACT
1 AATACGAGTATTTAAAAAAAATTTGATGCTGGCCTTGTAATGACCGACACC
* ** * * * *
102415164 AGACTACCACAATTAAAAAAAAATTTTGATGCTGGCCTTGTGAT-AGCTGACGCC
1 A-A-TACGAGTATTTAAAAAAAA-TTTGATGCTGGCCTTGTAATGA-CCGACACC
* * * *
102415218 AGTACGAGTATTTAAAAAAAA-TTGATGTTTGCCTTGTAATGACCGGCACC
1 AATACGAGTATTTAAAAAAAATTTGATGCTGGCCTTGTAATGACCGACACC
102415268 AATACGAGTATTTAAAAAA
1 AATACGAGTATTTAAAAAA
102415287 TTTAAATAAA
Statistics
Matches: 93, Mismatches: 23, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
49 1 0.01
50 40 0.43
51 16 0.17
52 18 0.19
53 11 0.12
54 7 0.08
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (51 bp):
AATACGAGTATTTAAAAAAAATTTGATGCTGGCCTTGTAATGACCGACACC
Found at i:102415326 original size:59 final size:59
Alignment explanation
Indices: 102415227--102415345 Score: 148
Period size: 59 Copynumber: 2.0 Consensus size: 59
102415217 CAGTACGAGT
* * * * * *
102415227 ATTTAAAAAAAATTGATGTTTGCCTTGTAATGACCGGCACCAATACGAGTATTTAAAAA
1 ATTTAAAAAAAATTGATGCTAGACTTGTAACGACCAGCACCAATACGAGCATTTAAAAA
* * * *
102415286 ATTTAAATAAAATTGGTGCTAGACTTGTAACGGCCAGCACCAGTACGAGCATTTAAAAA
1 ATTTAAAAAAAATTGATGCTAGACTTGTAACGACCAGCACCAATACGAGCATTTAAAAA
102415345 A
1 A
102415346 AAATGGTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (59 bp):
ATTTAAAAAAAATTGATGCTAGACTTGTAACGACCAGCACCAATACGAGCATTTAAAAA
Found at i:102415572 original size:52 final size:49
Alignment explanation
Indices: 102415455--102415590 Score: 155
Period size: 49 Copynumber: 2.7 Consensus size: 49
102415445 CAAAATTTTT
* *
102415455 TGGTGCTGGCCTTCTAATTGCCGGCACTAGTACGAGTATTTAAAAAAAA
1 TGGTGCTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAA
** * * *
102415504 TGGTTTTGGCCTTCTAATGGCCGACACCAGATACTAGTATTTAAAAAAATTC
1 TGGTGCTGGCCTTCTAATGGCCGGCACCAG-TACGAGTATTTAAAAAAA--A
* * *
102415556 TGGTGCTAGCCTTCTAATGACCGGCACCTGTACGA
1 TGGTGCTGGCCTTCTAATGGCCGGCACCAGTACGA
102415591 AATTTTTTTT
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
49 25 0.36
50 17 0.24
51 4 0.06
52 24 0.34
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29
Consensus pattern (49 bp):
TGGTGCTGGCCTTCTAATGGCCGGCACCAGTACGAGTATTTAAAAAAAA
Found at i:102418686 original size:24 final size:24
Alignment explanation
Indices: 102418650--102418698 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
102418640 ACCATCGTGG
102418650 ACACCGACGACAACTCCTGGTGTA
1 ACACCGACGACAACTCCTGGTGTA
* *
102418674 ACACCGGCTACAACTCCTGGTGTA
1 ACACCGACGACAACTCCTGGTGTA
102418698 A
1 A
102418699 GAAGCTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.33, G:0.20, T:0.18
Consensus pattern (24 bp):
ACACCGACGACAACTCCTGGTGTA
Found at i:102422299 original size:6 final size:6
Alignment explanation
Indices: 102422285--102422314 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
102422275 ATTATTTTTA
*
102422285 AAAAAT AAAATT AAAATT AAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT
102422315 GTACATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:102422393 original size:12 final size:12
Alignment explanation
Indices: 102422361--102422403 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
102422351 AAATTTTAAT
*
102422361 TTAATTTAATT-
1 TTAATATAATTA
*
102422372 TTTATA-AATTA
1 TTAATATAATTA
102422383 TTAATATAATTA
1 TTAATATAATTA
102422395 TTAATATAA
1 TTAATATAA
102422404 CATTATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 4 0.15
11 9 0.33
12 14 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TTAATATAATTA
Found at i:102436014 original size:17 final size:17
Alignment explanation
Indices: 102435979--102436026 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
102435969 TAAATATTTT
* *
102435979 TTAAATTTA-AATTTAA
1 TTAAATATATAATATAA
102435995 TTAAATATATAATATAA
1 TTAAATATATAATATAA
*
102436012 TTAAAAATATAATAT
1 TTAAATATATAATAT
102436027 TAAATATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 8 0.29
17 20 0.71
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAATATATAATATAA
Found at i:102436455 original size:23 final size:24
Alignment explanation
Indices: 102436429--102436491 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
102436419 TAAGTTATTG
*
102436429 ATTTCAATAAATAAATATTT-TAA
1 ATTTCAATAAATAAAAATTTATAA
* **
102436452 ATTTAAACTAAA-AAAAATTTATTT
1 ATTTCAA-TAAATAAAAATTTATAA
102436476 ATTTCAA-AAATAAAAA
1 ATTTCAATAAATAAAAA
102436492 AAAATAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
22 3 0.09
23 18 0.56
24 11 0.34
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (24 bp):
ATTTCAATAAATAAAAATTTATAA
Found at i:102444155 original size:10 final size:10
Alignment explanation
Indices: 102444140--102444185 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
102444130 TTAAAAATAT
102444140 TTTTTTACAA
1 TTTTTTACAA
*
102444150 TTTTTTATAA
1 TTTTTTACAA
*
102444160 -TTTCTACAA
1 TTTTTTACAA
102444169 TCTTTTTACAA
1 T-TTTTTACAA
102444180 TTTTTT
1 TTTTTT
102444186 GTAATAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 7 0.23
10 14 0.47
11 9 0.30
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTTTTACAA
Found at i:102444306 original size:29 final size:27
Alignment explanation
Indices: 102444246--102444306 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 27
102444236 TTGTAAATTT
*
102444246 TATTTTTATAATTTATATATTTTTCTA
1 TATTTTTATAATTTATATATTTTTATA
*
102444273 GATTTTATATAAATTTATGA-ATTTTTATA
1 TATTTT-TAT-AATTTAT-ATATTTTTATA
102444302 TATTT
1 TATTT
102444307 ATTTCCATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.18
28 3 0.11
29 19 0.68
30 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (27 bp):
TATTTTTATAATTTATATATTTTTATA
Found at i:102446615 original size:21 final size:21
Alignment explanation
Indices: 102446591--102446632 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
102446581 CCTATTTTTG
*
102446591 TAATTTATCAAAAAGCTCATA
1 TAATTTATCAAAAAACTCATA
102446612 TAATTTATCAAAAAACTCATA
1 TAATTTATCAAAAAACTCATA
102446633 ATGATTCATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.33
Consensus pattern (21 bp):
TAATTTATCAAAAAACTCATA
Found at i:102452018 original size:22 final size:22
Alignment explanation
Indices: 102451990--102452031 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
102451980 TTATTATATT
**
102451990 TTTTTTTCACCCAAAAAAAATA
1 TTTTTTTCACAAAAAAAAAATA
102452012 TTTTTTTCACAAAAAAAAAA
1 TTTTTTTCACAAAAAAAAAA
102452032 GCGATCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTTTTTCACAAAAAAAAAATA
Found at i:102452068 original size:5 final size:6
Alignment explanation
Indices: 102452050--102452075 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
102452040 AACATGCTTC
102452050 TTCTTT TTCTTT TTCTTT TTCTTT TT
1 TTCTTT TTCTTT TTCTTT TTCTTT TT
102452076 AATTGTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTCTTT
Found at i:102454317 original size:37 final size:37
Alignment explanation
Indices: 102454276--102454367 Score: 175
Period size: 37 Copynumber: 2.5 Consensus size: 37
102454266 ATAATGGGTT
*
102454276 GGTCCAATTTTATAATTTTTTGGGATAATAATATTTA
1 GGTCCAATTTTATAATTTTTGGGGATAATAATATTTA
102454313 GGTCCAATTTTATAATTTTTGGGGATAATAATATTTA
1 GGTCCAATTTTATAATTTTTGGGGATAATAATATTTA
102454350 GGTCCAATTTTATAATTT
1 GGTCCAATTTTATAATTT
102454368 AGCCCCACAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.48
Consensus pattern (37 bp):
GGTCCAATTTTATAATTTTTGGGGATAATAATATTTA
Found at i:102454327 original size:21 final size:21
Alignment explanation
Indices: 102454303--102454365 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
102454293 TTTTGGGATA
102454303 ATAATATTTAGGTCCAATTTT
1 ATAATATTTAGGTCCAATTTT
* ** *
102454324 ATAAT-TTTTGG--GGA--TA
1 ATAATATTTAGGTCCAATTTT
102454340 ATAATATTTAGGTCCAATTTT
1 ATAATATTTAGGTCCAATTTT
102454361 ATAAT
1 ATAAT
102454366 TTAGCCCCAC
Statistics
Matches: 29, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
16 6 0.21
17 5 0.17
18 1 0.03
19 1 0.03
20 5 0.17
21 11 0.38
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (21 bp):
ATAATATTTAGGTCCAATTTT
Found at i:102455596 original size:25 final size:24
Alignment explanation
Indices: 102455567--102455627 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
102455557 ATCATTTTAT
*
102455567 ATTTATATATTACATATATAAAT-A
1 ATTTATATATTA-ATATAAAAATGA
*
102455591 ATTTTATTTATCTAATATAAAAATGA
1 A-TTTATATAT-TAATATAAAAATGA
*
102455617 ATTGATATATT
1 ATTTATATATT
102455628 TATTTTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 2 0.07
25 24 0.80
26 4 0.13
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (24 bp):
ATTTATATATTAATATAAAAATGA
Found at i:102462521 original size:20 final size:20
Alignment explanation
Indices: 102462496--102462534 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
102462486 AAAATTTTCG
102462496 AAAATTCTTT-TTAGACCCTT
1 AAAATT-TTTATTAGACCCTT
102462516 AAAATTTTTAGTTAGACCC
1 AAAATTTTTA-TTAGACCC
102462535 AAAAAAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.18
20 6 0.35
21 8 0.47
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (20 bp):
AAAATTTTTATTAGACCCTT
Found at i:102463120 original size:16 final size:15
Alignment explanation
Indices: 102463101--102463135 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
102463091 TTTTAAAATT
102463101 TAAAAAATATAAAAA
1 TAAAAAATATAAAAA
*
102463116 CTAAAAAATATCAAAA
1 -TAAAAAATATAAAAA
102463132 TAAA
1 TAAA
102463136 GAACATGGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAAAAATATAAAAA
Found at i:102468689 original size:27 final size:27
Alignment explanation
Indices: 102468656--102468709 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
102468646 AAAATATTAA
102468656 AAGAAAAGTTTTGGTTGAATGATAAAT
1 AAGAAAAGTTTTGGTTGAATGATAAAT
102468683 AAGAAAAGTTTTGGTTGAATGATAAAT
1 AAGAAAAGTTTTGGTTGAATGATAAAT
102468710 TTAATATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (27 bp):
AAGAAAAGTTTTGGTTGAATGATAAAT
Found at i:102477937 original size:41 final size:41
Alignment explanation
Indices: 102477891--102477991 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 41
102477881 TCGACCTTGA
*
102477891 GTCGATGAGACACTGGGTGTCACTAAATTT-CTTCGGATAG
1 GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
* ** * *
102477931 ATTCGATGAGGTA-TTGG-GT-ACCAAATTTACTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
*
102477970 GCCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
102477992 ACTATTACTT
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
38 16 0.36
39 14 0.31
40 5 0.11
41 10 0.22
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (41 bp):
GTCGATGAGACACTGGGTGTCACCAAATTTACTTCGGATAG
Found at i:102478679 original size:20 final size:20
Alignment explanation
Indices: 102478656--102478693 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
102478646 GTTATTAAGT
102478656 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
102478676 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
102478694 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:102479080 original size:20 final size:22
Alignment explanation
Indices: 102479055--102479103 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
102479045 TTTAAAAATT
*
102479055 ATAAAATATTCAT-AATA-AAA
1 ATAAAATAATCATAAATATAAA
*
102479075 ATAAAA-AATCATAAATATACA
1 ATAAAATAATCATAAATATAAA
102479096 ATAAAATA
1 ATAAAATA
102479104 GCATGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.21
20 10 0.42
21 8 0.33
22 1 0.04
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (22 bp):
ATAAAATAATCATAAATATAAA
Found at i:102479098 original size:21 final size:22
Alignment explanation
Indices: 102479074--102479115 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
102479064 TCATAATAAA
*
102479074 AATAAAAAATCAT-AAATATAC
1 AATAAAAAAGCATGAAATATAC
*
102479095 AATAAAATAGCATGAAATATA
1 AATAAAAAAGCATGAAATATA
102479116 GTAAATTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.24
Consensus pattern (22 bp):
AATAAAAAAGCATGAAATATAC
Found at i:102480048 original size:28 final size:27
Alignment explanation
Indices: 102480003--102480064 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
102479993 TTCTACATAA
*
102480003 AAATGAATCAAAATAATATAT-ATATAT
1 AAATTAATCAAAATAATAT-TCATATAT
102480030 ATAATTAATC-AAATCAATATTCATATAT
1 A-AATTAATCAAAAT-AATATTCATATAT
102480058 AAATTAA
1 AAATTAA
102480065 GCATTAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
27 12 0.39
28 19 0.61
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.35
Consensus pattern (27 bp):
AAATTAATCAAAATAATATTCATATAT
Found at i:102482177 original size:31 final size:31
Alignment explanation
Indices: 102482142--102482205 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
102482132 ATAATTTAAT
*
102482142 TTGATCAATTTTAGTC-TCTTTACTTTTCGGA
1 TTGATCAATTTTAGTCAT-TATACTTTTCGGA
* *
102482173 TTGATTAATTTTAGTCATTATACTTTTTGGA
1 TTGATCAATTTTAGTCATTATACTTTTCGGA
102482204 TT
1 TT
102482206 CTGAAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.22, C:0.11, G:0.12, T:0.55
Consensus pattern (31 bp):
TTGATCAATTTTAGTCATTATACTTTTCGGA
Found at i:102497667 original size:6 final size:6
Alignment explanation
Indices: 102497656--102497682 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
102497646 TATACTATTA
102497656 TTTGCT TTTGCT TTTGCT TTTGCT TTT
1 TTTGCT TTTGCT TTTGCT TTTGCT TTT
102497683 TTATAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.15, T:0.70
Consensus pattern (6 bp):
TTTGCT
Found at i:102504703 original size:16 final size:15
Alignment explanation
Indices: 102504682--102504714 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 15
102504672 TGACGTACAT
102504682 TTTTAAAATTTTAAAA
1 TTTTAAAA-TTTAAAA
102504698 TTTTAAAATTTAAAA
1 TTTTAAAATTTAAAA
102504713 TT
1 TT
102504715 ATGTATTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TTTTAAAATTTAAAA
Found at i:102504711 original size:7 final size:8
Alignment explanation
Indices: 102504682--102504714 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
102504672 TGACGTACAT
102504682 TTTTAAAA
1 TTTTAAAA
102504690 TTTTAAAA
1 TTTTAAAA
102504698 TTTTAAAA
1 TTTTAAAA
102504706 -TTTAAAA
1 TTTTAAAA
102504713 TT
1 TT
102504715 ATGTATTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:102520157 original size:21 final size:21
Alignment explanation
Indices: 102520123--102520163 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
102520113 AGACGAGCAA
* * *
102520123 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
102520144 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
102520164 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:102523360 original size:30 final size:31
Alignment explanation
Indices: 102523324--102523386 Score: 103
Period size: 30 Copynumber: 2.1 Consensus size: 31
102523314 ACTTAACAAG
102523324 CAAATGT-TTCTAAAATAATAAT-AAAATTAA
1 CAAATGTCTT-TAAAATAATAATAAAAATTAA
102523354 CAAATGTCTTTAAAATAATAATAAAAATTAA
1 CAAATGTCTTTAAAATAATAATAAAAATTAA
102523385 CA
1 CA
102523387 CTAAAATAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
30 19 0.61
31 12 0.39
ACGTcount: A:0.57, C:0.08, G:0.03, T:0.32
Consensus pattern (31 bp):
CAAATGTCTTTAAAATAATAATAAAAATTAA
Found at i:102523442 original size:11 final size:11
Alignment explanation
Indices: 102523424--102523463 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
102523414 ACAATAACAA
102523424 CAAAATAGTAG
1 CAAAATAGTAG
* *
102523435 CAACATAGAAG
1 CAAAATAGTAG
*
102523446 TAAAATAGTAG
1 CAAAATAGTAG
102523457 CAAAATA
1 CAAAATA
102523464 AGGAGAAAAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.10, G:0.15, T:0.17
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:102530717 original size:42 final size:42
Alignment explanation
Indices: 102530665--102530790 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 42
102530655 AAAAGCCAAA
* *
102530665 TTCTATTCATAACAACAAAGGAAGTTAGGTAATTTAAAAAAG
1 TTCTATTCATAATAATAAAGGAAGTTAGGTAATTTAAAAAAG
*
102530707 TTCTATTCATAATAATAGAGGAAGTTAGGTAATTTAAGAAAA-
1 TTCTATTCATAATAATAAAGGAAGTTAGGTAATTTAA-AAAAG
* * * *
102530749 TTATATTCATAATAATAAAGGAAGCTAGGTAAATTAAGAAAG
1 TTCTATTCATAATAATAAAGGAAGTTAGGTAATTTAAAAAAG
102530791 GGATAATTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 3 0.04
42 67 0.91
43 4 0.05
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (42 bp):
TTCTATTCATAATAATAAAGGAAGTTAGGTAATTTAAAAAAG
Found at i:102538879 original size:16 final size:16
Alignment explanation
Indices: 102538858--102538891 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
102538848 GACTTATAAA
*
102538858 TAAATATTAATAACTT
1 TAAATACTAATAACTT
102538874 TAAATACTAATAACTT
1 TAAATACTAATAACTT
102538890 TA
1 TA
102538892 TTTAAACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAATACTAATAACTT
Found at i:102542796 original size:22 final size:22
Alignment explanation
Indices: 102542771--102542831 Score: 54
Period size: 22 Copynumber: 2.7 Consensus size: 22
102542761 ATTTGACTAT
102542771 TTTAAAAAAGTAAAAGACCAAA
1 TTTAAAAAAGTAAAAGACCAAA
*
102542793 TTTAACTAAAAG--AAAGACCAAT
1 TTTAA--AAAAGTAAAAGACCAAA
*
102542815 TTGATAAAAAAATAAAA
1 TT--TAAAAAAGTAAAA
102542832 ACATTAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
22 20 0.65
24 11 0.35
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.21
Consensus pattern (22 bp):
TTTAAAAAAGTAAAAGACCAAA
Found at i:102548040 original size:18 final size:19
Alignment explanation
Indices: 102547999--102548045 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
102547989 CATTACAACC
102547999 CAAAAAGAAAAAGGAGATA
1 CAAAAAGAAAAAGGAGATA
* * *
102548018 GAAAAAGAAAAGGGGGAT-
1 CAAAAAGAAAAAGGAGATA
102548036 CAAAAAGAAA
1 CAAAAAGAAA
102548046 GAACATATCC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.66, C:0.04, G:0.26, T:0.04
Consensus pattern (19 bp):
CAAAAAGAAAAAGGAGATA
Found at i:102552514 original size:18 final size:18
Alignment explanation
Indices: 102552460--102552519 Score: 50
Period size: 19 Copynumber: 3.2 Consensus size: 18
102552450 ATTAAATTTA
102552460 TTTATGATTTTATAGT-ATT
1 TTTA-GATTTTATA-TAATT
* * *
102552479 TTCAGTATTTTTTGTAATT
1 TTTAG-ATTTTATATAATT
102552498 TTTAGATTTTATATAATAT
1 TTTAGATTTTATATAAT-T
102552517 TTT
1 TTT
102552520 TTAAAAATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
18 12 0.38
19 20 0.62
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (18 bp):
TTTAGATTTTATATAATT
Found at i:102556688 original size:2 final size:2
Alignment explanation
Indices: 102556681--102556708 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
102556671 TTGATGTTTC
102556681 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
102556709 TTAACTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:102564019 original size:137 final size:137
Alignment explanation
Indices: 102563855--102564128 Score: 449
Period size: 137 Copynumber: 2.0 Consensus size: 137
102563845 CACCACCTAT
102563855 TCCCAATGCTATTCCAGATATTATTATTTTTGGATGAATTATAAGAAGAGCGCAAAAGCCCTAAA
1 TCCCAATGCTATTCCAGATATTATTATTTTTGGATGAATTATAAGAAGAGCGCAAAAGCCCTAAA
* * * * *
102563920 CAATAATCCAACAAGTGTGATTTGAACTCAGGCCATACCTAGGGCAATGAATACATTGACCATTA
66 CAACAACCCAACAAGTGTGACTTGAACTCAAGCCATACCTAGGGCAATGAACACATTGACCATTA
102563985 GGCCAAC
131 GGCCAAC
* *
102563992 TCCCAATGCTATTCCAGATTTTATTATTTTTGGATGAATTATAAGAGGAGCGCAAAAGCCCTAAA
1 TCCCAATGCTATTCCAGATATTATTATTTTTGGATGAATTATAAGAAGAGCGCAAAAGCCCTAAA
* * * *
102564057 CAACAACCCGACAAGTGTGACTTGAACTCAAGCCATACCTAGGGTAGTGAACACCTTGACCATTA
66 CAACAACCCAACAAGTGTGACTTGAACTCAAGCCATACCTAGGGCAATGAACACATTGACCATTA
102564122 GGCCAAC
131 GGCCAAC
102564129 ATACGTAGTT
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
137 126 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.26
Consensus pattern (137 bp):
TCCCAATGCTATTCCAGATATTATTATTTTTGGATGAATTATAAGAAGAGCGCAAAAGCCCTAAA
CAACAACCCAACAAGTGTGACTTGAACTCAAGCCATACCTAGGGCAATGAACACATTGACCATTA
GGCCAAC
Found at i:102564616 original size:39 final size:37
Alignment explanation
Indices: 102564529--102564608 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
102564519 TATTTAAAAC
* *
102564529 AATAAAATATTTATTATATTTATTAGTGTTTTAATAT
1 AATAAAACATTTATTATATTTATTAATGTTTTAATAT
102564566 AATAAAACATTTATTATATTTATGATAATGTTTTCTAATAT
1 AATAAAACATTTATTATATTTAT--TAATG-TTT-TAATAT
102564607 AA
1 AA
102564609 ATACATTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
37 22 0.59
39 4 0.11
40 3 0.08
41 8 0.22
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (37 bp):
AATAAAACATTTATTATATTTATTAATGTTTTAATAT
Found at i:102565156 original size:28 final size:27
Alignment explanation
Indices: 102565102--102565191 Score: 69
Period size: 27 Copynumber: 3.3 Consensus size: 27
102565092 AAATATTACT
* **
102565102 ATAACAAATTTAATAAAATTTAAAAATA
1 ATAA-AAATTAAATAAAATTTTTAAATA
*
102565130 TTAAAAATTAAATTAAAATTTTTAAAT-
1 ATAAAAATTAAA-TAAAATTTTTAAATA
* *
102565157 CTAAAAAGTAAGACT-AAATTTTTAAA-A
1 ATAAAAATTAA-A-TAAAATTTTTAAATA
102565184 ATAAAAAT
1 ATAAAAAT
102565192 ATAGAAACTA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
27 33 0.66
28 17 0.34
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (27 bp):
ATAAAAATTAAATAAAATTTTTAAATA
Found at i:102565161 original size:27 final size:27
Alignment explanation
Indices: 102565131--102565206 Score: 73
Period size: 27 Copynumber: 2.7 Consensus size: 27
102565121 TTAAAAATAT
* **
102565131 TAAAAATTAA-ATTAAAATTTTTAAATC
1 TAAAAATTAAGACT-AAATTTTTAAAAA
*
102565158 TAAAAAGTAAGACTAAATTTTTAAAAA
1 TAAAAATTAAGACTAAATTTTTAAAAA
*
102565185 TAAAAATATAGAAACTAAATTT
1 TAAAAAT-TA-AGACTAAATTT
102565207 CATATTTGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 26 0.65
28 4 0.10
29 10 0.25
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (27 bp):
TAAAAATTAAGACTAAATTTTTAAAAA
Found at i:102575288 original size:16 final size:16
Alignment explanation
Indices: 102575219--102575286 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
102575209 TTTGGTTCGC
102575219 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
102575235 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
102575251 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* * *
102575267 TGTAATGGAATAGATG
1 TGTATTGGATTAGAGG
102575283 TGTA
1 TGTA
102575287 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:102575318 original size:45 final size:43
Alignment explanation
Indices: 102575267--102575361 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 43
102575257 GGATTAGAGG
* *
102575267 TGTAATGGAATAGATGTGTAATAGCAAATCAAC-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG--AA-CAACGTGTTTGGTTGAA
*
102575312 TGTAATGGAATAGAGGCGTAATAGTACAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAACAAC-GTGTTTGGTTGAA
102575356 TGTAAT
1 TGTAAT
102575362 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
42 4 0.09
43 1 0.02
44 18 0.40
45 22 0.49
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (43 bp):
TGTAATGGAATAGAGGCGTAATAGAACAACGTGTTTGGTTGAA
Found at i:102575544 original size:18 final size:17
Alignment explanation
Indices: 102575523--102575557 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102575513 TTATTATTTA
*
102575523 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
102575541 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
102575558 TCTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:102575551 original size:28 final size:27
Alignment explanation
Indices: 102575481--102575553 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
102575471 TTTATTATCA
*
102575481 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
102575509 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
102575536 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
102575554 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:102575691 original size:18 final size:17
Alignment explanation
Indices: 102575670--102575704 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102575660 TTATTATTAA
*
102575670 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
102575688 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
102575705 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:102575750 original size:61 final size:60
Alignment explanation
Indices: 102575685--102575872 Score: 172
Period size: 61 Copynumber: 3.1 Consensus size: 60
102575675 TTTTAATTAA
*
102575685 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTCATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATAATCT-ATATGAATTTACTCAAATCAT
* * ** * * * * *
102575746 AATATATGATACTGTAA-AATATAAATTAA-AA-TAATAAT-TAT-TAAATATA-TTATAATTAA
1 AATATAT-A-A-TTTAATAAAAT-TCTTAATAATTAATAATCTATATGAATTTACTCA-AATCAT
*
102575805 AATATATAATTTAATAAAATTCTTAATAATTAATAGTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATAATC-TATATGAATTTACTCAAATCAT
102575866 AATATAT
1 AATATAT
102575873 GATACTATAA
Statistics
Matches: 95, Mismatches: 20, Indels: 24
0.68 0.14 0.17
Matches are distributed among these distances:
56 8 0.08
57 7 0.07
58 9 0.09
59 17 0.18
60 5 0.05
61 25 0.26
62 9 0.09
63 7 0.07
64 8 0.08
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.41
Consensus pattern (60 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATAATCTATATGAATTTACTCAAATCAT
Found at i:102575791 original size:120 final size:120
Alignment explanation
Indices: 102575648--102575945 Score: 483
Period size: 120 Copynumber: 2.5 Consensus size: 120
102575638 ATTTAATCAT
*
102575648 ATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAA-ATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
102575713 ATTAATATTCTCATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA
65 ATTAATAGTCTCATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AA
*
102575770 A-TTAAAATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAA
1 ATTTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
102575834 TTAATAGTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
66 TTAATAGTCTCATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
* *
102575889 ATTTGAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTAAAATAA-TAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
102575946 TAAAATAATT
Statistics
Matches: 165, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
119 3 0.02
120 153 0.93
121 8 0.05
122 1 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (120 bp):
ATTTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
TTAATAGTCTCATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAA
Found at i:102575809 original size:16 final size:16
Alignment explanation
Indices: 102575769--102575814 Score: 60
Period size: 15 Copynumber: 3.0 Consensus size: 16
102575759 GTAAAATATA
102575769 AATTAAAATA-ATAAT
1 AATTAAAATATATAAT
* *
102575784 TATT-AAATATATTAT
1 AATTAAAATATATAAT
102575799 AATTAAAATATATAAT
1 AATTAAAATATATAAT
102575815 TTAATAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 5 0.20
15 10 0.40
16 10 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTAAAATATATAAT
Found at i:102575956 original size:54 final size:54
Alignment explanation
Indices: 102575763--102575956 Score: 144
Period size: 54 Copynumber: 3.4 Consensus size: 54
102575753 GATACTGTAA
* *
102575763 AATATAAA-TTAAAATAA-TAATTATTAAATATATTATAATTAAAATATATAATTT
1 AATA-AAATTTAAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTT
* * * *
102575817 AATAAAATTCT-TAATAATTAATAGTCT-TATATGAATTTACTCAAATCATAATATATGATACTA
1 AATAAAATT-TAAAATAATTAATA-T-TAAATAT--ATTT--T--AATTAAAATATATGAT--T-
102575880 T
54 T
* *
102575881 AAAAGAAAATTTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTT
1 --AATAAAATTTAAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTT
102575937 AATAAAATTTAAAATAATTA
1 AATAAAATTTAAAATAATTA
102575957 TAACTAATAA
Statistics
Matches: 109, Mismatches: 13, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
53 3 0.03
54 30 0.28
55 9 0.08
56 2 0.02
57 4 0.04
59 15 0.14
61 14 0.13
63 5 0.05
64 2 0.02
65 6 0.06
66 19 0.17
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (54 bp):
AATAAAATTTAAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTT
Found at i:102577822 original size:24 final size:24
Alignment explanation
Indices: 102577781--102577828 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
102577771 CTACGAATCT
* *
102577781 GCATAAACCAAATGAAAATTATAA
1 GCATAAACCAAATAAAAATAATAA
102577805 GCATAAA-CAAATTAAAAATAATAA
1 GCATAAACCAAA-TAAAAATAATAA
102577829 TCTCCACCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.62, C:0.10, G:0.06, T:0.21
Consensus pattern (24 bp):
GCATAAACCAAATAAAAATAATAA
Found at i:102583199 original size:86 final size:86
Alignment explanation
Indices: 102583109--102583267 Score: 318
Period size: 86 Copynumber: 1.8 Consensus size: 86
102583099 AATATAATTG
102583109 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
1 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
102583174 TGTTAAGTATTAATGTTGATA
66 TGTTAAGTATTAATGTTGATA
102583195 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
1 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
102583260 TGTTAAGT
66 TGTTAAGT
102583268 GTTGACACCA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 73 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.47
Consensus pattern (86 bp):
TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
TGTTAAGTATTAATGTTGATA
Found at i:102584583 original size:18 final size:18
Alignment explanation
Indices: 102584560--102584621 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
102584550 ATATAGATAT
102584560 ATATATAATAAGATATAA
1 ATATATAATAAGATATAA
*
102584578 ATATATAATAAGATGATAT
1 ATATATAATAAGAT-ATAA
*
102584597 ATATA-AAT-AGTTAT-A
1 ATATATAATAAGATATAA
102584612 ATA-ATAATAA
1 ATATATAATAA
102584622 TAGGACAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 1 0.03
15 6 0.16
16 3 0.08
17 3 0.08
18 17 0.45
19 8 0.21
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
ATATATAATAAGATATAA
Found at i:102584612 original size:35 final size:35
Alignment explanation
Indices: 102584555--102584621 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 35
102584545 GGGATATATA
102584555 GATATATATATAATAAGATATAAATATATAATAAGAT
1 GATATATATATAATAAGATAT-AATA-ATAATAAGAT
*
102584592 GATATATATA-AAT-AGTTATAATAATAATAA
1 GATATATATATAATAAGATATAATAATAATAA
102584622 TAGGACAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.24
34 4 0.14
35 5 0.17
36 3 0.10
37 10 0.34
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (35 bp):
GATATATATATAATAAGATATAATAATAATAAGAT
Found at i:102586503 original size:133 final size:132
Alignment explanation
Indices: 102586229--102586485 Score: 347
Period size: 132 Copynumber: 1.9 Consensus size: 132
102586219 TCCGCAACGT
* * * **
102586229 CAGGGAGATAGAATTACTGGCTTCAAAGTACTCCATTGTAACCTTAAGGAGGTAAAATTCGCCAT
1 CAGGGAGATAAAATTACTGGATTCAAAGTACTCCACTGTAACCACAAGGAGGTAAAATTCGCCAT
* * * *
102586294 ATTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAATCTATTCCACTGCCC
66 ACTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAACCTATTCCACTACCC
102586359 AC
131 AC
* * *
102586361 CAGGGAGATAAAATTACTGGATTCAATGTACTCCACTGTAATCACAGGGAGGTAAAA-TCTGCCA
1 CAGGGAGATAAAATTACTGGATTCAAAGTACTCCACTGTAACCACAAGGAGGTAAAATTC-GCCA
* *
102586425 TTACTCGATCTGCTCCACTACTGCTTAGGGAGACATGATCTGA-AATCTTCAACCTATTCCA
65 -TACTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCT-ATAATCTTCAACCTATTCCA
102586486 TTACTGCTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
131 2 0.02
132 53 0.49
133 53 0.49
134 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (132 bp):
CAGGGAGATAAAATTACTGGATTCAAAGTACTCCACTGTAACCACAAGGAGGTAAAATTCGCCAT
ACTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAACCTATTCCACTACCC
AC
Found at i:102586614 original size:88 final size:88
Alignment explanation
Indices: 102586523--102587172 Score: 903
Period size: 88 Copynumber: 7.4 Consensus size: 88
102586513 ATCTTCAGTT
* * *
102586523 TGCTCCGCTGTCAATACAGGAAGGCAAGATCTGTTATCTTTC-A-CATGCTCGA-CTACAACCGA
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATC-TTCAACCA-GCTCCATC-ACAACCGA
* * **
102586585 GGGAGGCAAGGCTTGTGTCTTCGATT
63 GAGAGGCAAGGTTTGTGTCTTCGACC
* * * * ** * * *
102586611 TGCTTCGCTATCAATGTAGGAAGGCAAGATCTGCTATTTTTTTACCTGCTCC-CCTACAACCAAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTA-TCTTCAACCAGCTCCATC-ACAACCGAG
* *
102586675 GGAGGCAAGGTTTGTGTCTTCGATC
64 AGAGGCAAGGTTTGTGTCTTCGACC
* * *
102586700 TGCTTCACTGTCAATGCAGGAAGACAAGATCTGTTATCTTCAACCAGCTCCATCATAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
102586765 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* *
102586788 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAATCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
102586853 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * *
102586876 TGCTTCGCTGTCAATGCAGGAAGGTAAGAACTTTTGTCTTCAACCAGCTCCATCACAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
102586941 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * * * * *
102586964 TGCTTCGCTGTTAATGCAGGAAGGCAAGATCTATTCTCTTCAACCAGCTCCATCATAATCAAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
102587029 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
* * *
102587052 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCATAACCGAGAG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
102587117 AGGCAAGGTTTGTGTCTTCGACC
66 AGGCAAGGTTTGTGTCTTCGACC
102587140 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
1 TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTG
102587173 CAACTTCATT
Statistics
Matches: 508, Mismatches: 49, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
88 436 0.86
89 71 0.14
90 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (88 bp):
TGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTATCTTCAACCAGCTCCATCACAACCGAGAG
AGGCAAGGTTTGTGTCTTCGACC
Found at i:102588260 original size:21 final size:21
Alignment explanation
Indices: 102588234--102588280 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
102588224 GGTATAGCAG
*
102588234 GATCACCACATGCCCCAATCT
1 GATCACCACATACCCCAATCT
** *
102588255 GATCACTTCATACCCCATTCT
1 GATCACCACATACCCCAATCT
102588276 GATCA
1 GATCA
102588281 ATATTTGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.38, G:0.09, T:0.26
Consensus pattern (21 bp):
GATCACCACATACCCCAATCT
Found at i:102589303 original size:7 final size:8
Alignment explanation
Indices: 102589278--102589307 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
102589268 CTATTTTGAC
102589278 TTTGATTTT
1 TTTGA-TTT
102589287 TTTGATTT
1 TTTGATTT
102589295 TTTGATTT
1 TTTGATTT
102589303 TTTGA
1 TTTGA
102589308 ATTCATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:102591915 original size:19 final size:20
Alignment explanation
Indices: 102591886--102591934 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
102591876 CACTTCGTGA
* *
102591886 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
102591905 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
102591925 AAATG-AATGC
1 AAATGTAATGC
102591935 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:102594270 original size:18 final size:18
Alignment explanation
Indices: 102594249--102594302 Score: 83
Period size: 18 Copynumber: 3.0 Consensus size: 18
102594239 AGGGATATAT
102594249 AGATATATATATATAATA
1 AGATATATATATATAATA
*
102594267 AGATATAAATATATAATA
1 AGATATATATATATAATA
102594285 AGATGATATATATA-AATA
1 AGAT-ATATATATATAATA
102594303 GTTATAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 25 0.76
19 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (18 bp):
AGATATATATATATAATA
Found at i:102594309 original size:35 final size:34
Alignment explanation
Indices: 102594249--102594317 Score: 88
Period size: 37 Copynumber: 2.0 Consensus size: 34
102594239 AGGGATATAT
102594249 AGATATATATATATAATAAGATATAAATATATAATA
1 AGATATATATATATAATAAGATAT-AATA-ATAATA
*
102594285 AGATGATATATATA-AAT-AGTTATAATAATAATA
1 AGAT-ATATATATATAATAAGATATAATAATAATA
102594318 GGACAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
33 6 0.19
34 4 0.13
35 5 0.16
36 7 0.23
37 9 0.29
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (34 bp):
AGATATATATATATAATAAGATATAATAATAATA
Found at i:102595737 original size:51 final size:51
Alignment explanation
Indices: 102595676--102595829 Score: 274
Period size: 51 Copynumber: 3.0 Consensus size: 51
102595666 AAATTAAAAG
102595676 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
102595727 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
* *
102595778 ATTATACATACACCAGCAAAGTTTTTTAGGG-ACAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACA
102595829 A
1 A
102595830 GTAATTTTAG
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
50 1 0.01
51 99 0.99
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.28
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:102595838 original size:33 final size:34
Alignment explanation
Indices: 102595775--102595885 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 34
102595765 CATTAAACCA
* * *
102595775 ACAATTATACATACACCAGCAAAGT-TTTTTAGGG
1 ACAATTATACATAAACCAAC-AAGTAATTTTAGGG
102595809 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
102595841 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
102595874 TCAATTATACAT
1 ACAATTATACAT
102595886 GCTTTATAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
32 12 0.18
33 48 0.72
34 7 0.10
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:102599129 original size:120 final size:120
Alignment explanation
Indices: 102598916--102599658 Score: 1405
Period size: 120 Copynumber: 6.2 Consensus size: 120
102598906 TTTTCAAGTT
*
102598916 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
102598981 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTTTATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
102599036 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
102599101 TAATATAAGAATATTAATTATTAAGAATTTCATGAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
102599156 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
102599221 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
102599276 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
102599341 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
102599396 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
102599461 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
102599516 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
102599581 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
102599636 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
102599659 TAAATATGAT
Statistics
Matches: 608, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 608 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:102599635 original size:18 final size:17
Alignment explanation
Indices: 102599607--102599641 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
102599597 ATTATTAAGA
*
102599607 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
102599624 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
102599642 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:102599871 original size:44 final size:45
Alignment explanation
Indices: 102599806--102599896 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
102599796 ACCTCTATTC
* * *
102599806 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
102599850 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
102599895 CA
1 CA
102599897 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:102599898 original size:16 final size:16
Alignment explanation
Indices: 102599877--102599945 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
102599867 GATTAGCTAT
102599877 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102599893 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
102599910 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
102599926 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
102599942 TACA
1 TACA
102599946 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102599919 original size:33 final size:32
Alignment explanation
Indices: 102599877--102599945 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
102599867 GATTAGCTAT
102599877 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
102599910 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
102599942 TACA
1 TACA
102599946 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:102605794 original size:59 final size:60
Alignment explanation
Indices: 102605718--102605838 Score: 156
Period size: 59 Copynumber: 2.0 Consensus size: 60
102605708 CCTTAACATA
* *
102605718 GGAACAATTACCAAGTTCATGGACTAATTTAGA-CAAAAAAAAAGTTCAAGCCTCAATGTG
1 GGAACAATTACCAAGTTCAGGGACTAACTTAGAGCAAAAAAAAAGTTCAAGCCTCAA-GTG
* * * * *
102605778 GGAA-AATTACCAAGTTCAGGGCCTAACTTGGAGTAAAAAAAAGGTTCAGGCCTCAAGTG
1 GGAACAATTACCAAGTTCAGGGACTAACTTAGAGCAAAAAAAAAGTTCAAGCCTCAAGTG
102605837 GG
1 GG
102605839 GATAGTTGCC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 29 0.55
60 24 0.45
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.21
Consensus pattern (60 bp):
GGAACAATTACCAAGTTCAGGGACTAACTTAGAGCAAAAAAAAAGTTCAAGCCTCAAGTG
Found at i:102606083 original size:12 final size:12
Alignment explanation
Indices: 102606066--102606090 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102606056 ATCAATAATG
102606066 TTTTGTTTTGAT
1 TTTTGTTTTGAT
102606078 TTTTGTTTTGAT
1 TTTTGTTTTGAT
102606090 T
1 T
102606091 CATGTTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.16, T:0.76
Consensus pattern (12 bp):
TTTTGTTTTGAT
Found at i:102616350 original size:16 final size:16
Alignment explanation
Indices: 102616329--102616396 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
102616319 TTTGGTTCGC
102616329 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
102616345 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
102616360 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
102616377 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
102616393 TGTA
1 TGTA
102616397 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:102616368 original size:32 final size:32
Alignment explanation
Indices: 102616329--102616396 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
102616319 TTTGGTTCGC
102616329 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
102616361 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
102616393 TGTA
1 TGTA
102616397 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:102616733 original size:157 final size:157
Alignment explanation
Indices: 102616526--102616835 Score: 530
Period size: 157 Copynumber: 2.0 Consensus size: 157
102616516 CCCTTAGCAT
*
102616526 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* * *
102616591 TAATGAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
102616656 TTTAATAAAATTCTTAATAATTACCAA
131 TTTAATAAAATTCTTAATAATTACCAA
* * * *
102616683 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
102616748 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
102616813 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
102616836 ATATTCTTAT
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 143 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAA
Found at i:102625093 original size:62 final size:62
Alignment explanation
Indices: 102624996--102625122 Score: 254
Period size: 62 Copynumber: 2.0 Consensus size: 62
102624986 ATGACTTTTT
102624996 TTTTTTTGTAGTCTAATAACAATGTTTTTGAAAGTTTACTTATTTGGCTATCAGAATCATGG
1 TTTTTTTGTAGTCTAATAACAATGTTTTTGAAAGTTTACTTATTTGGCTATCAGAATCATGG
102625058 TTTTTTTGTAGTCTAATAACAATGTTTTTGAAAGTTTACTTATTTGGCTATCAGAATCATGG
1 TTTTTTTGTAGTCTAATAACAATGTTTTTGAAAGTTTACTTATTTGGCTATCAGAATCATGG
102625120 TTT
1 TTT
102625123 GTCTTTTTTC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.48
Consensus pattern (62 bp):
TTTTTTTGTAGTCTAATAACAATGTTTTTGAAAGTTTACTTATTTGGCTATCAGAATCATGG
Found at i:102628574 original size:51 final size:50
Alignment explanation
Indices: 102628519--102628616 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 50
102628509 TTAGACGATC
* *
102628519 ATTTTATAATTTTTCATAATTAGGTGATAAAAAAATTATAATTGAGTGGCA
1 ATTTTATAATTTTTCATAATTAAGTAATAAAAAAA-TATAATTGAGTGGCA
**
102628570 ATTTTATAATTTTTCATTGTTAAGTAATAAAAAAATATAATTGAGTG
1 ATTTTATAATTTTTCATAATTAAGTAATAAAAAAATATAATTGAGTG
102628617 ACCTTTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
50 12 0.28
51 31 0.72
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.43
Consensus pattern (50 bp):
ATTTTATAATTTTTCATAATTAAGTAATAAAAAAATATAATTGAGTGGCA
Found at i:102629729 original size:17 final size:17
Alignment explanation
Indices: 102629709--102629773 Score: 50
Period size: 17 Copynumber: 4.1 Consensus size: 17
102629699 ATATTGAATA
102629709 AATTTTATT-TTATTGTT
1 AATTTTATTATTATT-TT
*
102629726 AATTTTGTTATTATTTT
1 AATTTTATTATTATTTT
** *
102629743 AA--AGA-TATT-TGTT
1 AATTTTATTATTATTTT
102629756 AATTTTATTATTATTTT
1 AATTTTATTATTATTTT
102629773 A
1 A
102629774 GAGACATTTA
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
13 5 0.14
14 4 0.11
15 1 0.03
16 4 0.11
17 16 0.46
18 5 0.14
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
AATTTTATTATTATTTT
Found at i:102629756 original size:30 final size:30
Alignment explanation
Indices: 102629721--102629782 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
102629711 TTTTATTTTA
* *
102629721 TTGTTAATTTTGTTATTATTTTAAAGATAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
*
102629751 TTGTTAATTTTATTATTATTTTAGAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
102629781 TT
1 TT
102629783 ACTTGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:102632008 original size:29 final size:30
Alignment explanation
Indices: 102631966--102632029 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
102631956 TAGAGGTCTT
* *
102631966 ATCAAATTAGTCTTTCTACTAAT-AAATGA
1 ATCAAATTAATCTTTCTACTAATAAAAAGA
* * *
102631995 ATCAATTTAATCTTTTTACTATTAAAAAGA
1 ATCAAATTAATCTTTCTACTAATAAAAAGA
102632025 ATCAA
1 ATCAA
102632030 GTAAGGTCAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.39
Consensus pattern (30 bp):
ATCAAATTAATCTTTCTACTAATAAAAAGA
Found at i:102642688 original size:3 final size:3
Alignment explanation
Indices: 102642680--102642709 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
102642670 GAAAAAGATA
102642680 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
102642710 TTATTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:102644435 original size:37 final size:39
Alignment explanation
Indices: 102644373--102644451 Score: 126
Period size: 37 Copynumber: 2.1 Consensus size: 39
102644363 TGTCTTGGAC
*
102644373 TTTCTTATGTTAAAGAATTTAGATTATATTTTATTTTAT
1 TTTCTTATATTAAAGAATTTAGATTATATTTTATTTTAT
*
102644412 TTTCTTATATT-AAGAA-TTAGATTATATTTTATTTTGT
1 TTTCTTATATTAAAGAATTTAGATTATATTTTATTTTAT
102644449 TTT
1 TTT
102644452 GTTAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 23 0.61
38 5 0.13
39 10 0.26
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.61
Consensus pattern (39 bp):
TTTCTTATATTAAAGAATTTAGATTATATTTTATTTTAT
Found at i:102646685 original size:21 final size:22
Alignment explanation
Indices: 102646661--102646701 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
102646651 AAAATAAACT
*
102646661 TTATTTCATAAC-TTTTAAATA
1 TTATTTCACAACATTTTAAATA
*
102646682 TTATTTGACAACATTTTAAA
1 TTATTTCACAACATTTTAAA
102646702 ATTTTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (22 bp):
TTATTTCACAACATTTTAAATA
Found at i:102653638 original size:123 final size:123
Alignment explanation
Indices: 102653419--102653666 Score: 496
Period size: 123 Copynumber: 2.0 Consensus size: 123
102653409 GAAGTAAACA
102653419 CAACATAATATAGATGGAAAAATAACTGTTAAAAGTGCTGATTTTGTTCGTGTGGCTGGATTTCG
1 CAACATAATATAGATGGAAAAATAACTGTTAAAAGTGCTGATTTTGTTCGTGTGGCTGGATTTCG
102653484 TATAATACTGACAGAAGAGGGTTTTGCTCATCGCAGTTGCTACTAAGTTTCGAAACGG
66 TATAATACTGACAGAAGAGGGTTTTGCTCATCGCAGTTGCTACTAAGTTTCGAAACGG
102653542 CAACATAATATAGATGGAAAAATAACTGTTAAAAGTGCTGATTTTGTTCGTGTGGCTGGATTTCG
1 CAACATAATATAGATGGAAAAATAACTGTTAAAAGTGCTGATTTTGTTCGTGTGGCTGGATTTCG
102653607 TATAATACTGACAGAAGAGGGTTTTGCTCATCGCAGTTGCTACTAAGTTTCGAAACGG
66 TATAATACTGACAGAAGAGGGTTTTGCTCATCGCAGTTGCTACTAAGTTTCGAAACGG
102653665 CA
1 CA
102653667 TAGTCTATAA
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 125 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (123 bp):
CAACATAATATAGATGGAAAAATAACTGTTAAAAGTGCTGATTTTGTTCGTGTGGCTGGATTTCG
TATAATACTGACAGAAGAGGGTTTTGCTCATCGCAGTTGCTACTAAGTTTCGAAACGG
Found at i:102660885 original size:21 final size:21
Alignment explanation
Indices: 102660859--102660899 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
102660849 TTATGATATT
102660859 TATTTTAAATTA-ATTTTTAAA
1 TATTTT-AATTATATTTTTAAA
102660880 TATTTTAATTATATTTTTAA
1 TATTTTAATTATATTTTTAA
102660900 TTATCGATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTTTAATTATATTTTTAAA
Found at i:102660900 original size:12 final size:12
Alignment explanation
Indices: 102660859--102660903 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
102660849 TTATGATATT
*
102660859 TATTTTAAATTA
1 TATTTTTAATTA
102660871 -ATTTTTAA--A
1 TATTTTTAATTA
102660880 TA-TTTTAATTA
1 TATTTTTAATTA
102660891 TATTTTTAATTA
1 TATTTTTAATTA
102660903 T
1 T
102660904 CGATGTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
9 7 0.25
10 1 0.04
11 10 0.36
12 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTTTTAATTA
Found at i:102661054 original size:6 final size:7
Alignment explanation
Indices: 102661035--102661069 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
102661025 TACATAACTT
102661035 TTAAAAA
1 TTAAAAA
*
102661042 GTAAAAA
1 TTAAAAA
102661049 TTAAAAA
1 TTAAAAA
102661056 TTAAAAA
1 TTAAAAA
102661063 TTAAAAA
1 TTAAAAA
102661070 AAAGAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (7 bp):
TTAAAAA
Found at i:102663920 original size:57 final size:58
Alignment explanation
Indices: 102663841--102663971 Score: 171
Period size: 57 Copynumber: 2.3 Consensus size: 58
102663831 CCAGGTCGTT
* *
102663841 GGTCCACTCGGCTTAA-AGAAGTAGCCAAA-TCAGA-CATCTTATCACCAGTTGTTCATC
1 GGTCCCCTCGGCTTAAGAGAAGTAG-CAAAGCCAGATC-TCTTATCACCAGTTGTTCATC
* *
102663898 GGTCCCCTCGGCTTAAGA-AAGTAGCAAAGCCAGATCTTTTATCACCAGTTGTTCGTC
1 GGTCCCCTCGGCTTAAGAGAAGTAGCAAAGCCAGATCTCTTATCACCAGTTGTTCATC
*
102663955 AGTCCCCTCGGCTTAAG
1 GGTCCCCTCGGCTTAAG
102663972 GTATTATATC
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
56 4 0.06
57 60 0.91
58 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (58 bp):
GGTCCCCTCGGCTTAAGAGAAGTAGCAAAGCCAGATCTCTTATCACCAGTTGTTCATC
Found at i:102671012 original size:15 final size:15
Alignment explanation
Indices: 102670992--102671021 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
102670982 ACTGTTAGTC
102670992 TGCAATAATTTGCAT
1 TGCAATAATTTGCAT
102671007 TGCAATAATTTGCAT
1 TGCAATAATTTGCAT
102671022 CAAAACTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
TGCAATAATTTGCAT
Found at i:102675064 original size:29 final size:29
Alignment explanation
Indices: 102675021--102675083 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
102675011 TGATCTGTCA
102675021 AATATATCTTATGATAATATATAGAAATC
1 AATATATCTTATGATAATATATAGAAATC
*
102675050 AATATATCTTCTGATAATATATAGAAATC
1 AATATATCTTATGATAATATATAGAAATC
102675079 AATAT
1 AATAT
102675084 TTAAATGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (29 bp):
AATATATCTTATGATAATATATAGAAATC
Found at i:102682420 original size:19 final size:19
Alignment explanation
Indices: 102682392--102682429 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
102682382 TTTAATAGTC
*
102682392 TATATCTTTATAAATTTTA
1 TATATATTTATAAATTTTA
102682411 TATATATTTATAAATTTTA
1 TATATATTTATAAATTTTA
102682430 AAAGATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATATTTATAAATTTTA
Found at i:102682949 original size:17 final size:17
Alignment explanation
Indices: 102682909--102682950 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
102682899 AATTGTAATA
*
102682909 AAAATTATTCAAAAATT
1 AAAATTATTCAAAAAAT
*
102682926 AATATTATT-AAATAAAT
1 AAAATTATTCAAA-AAAT
102682943 AAAATTAT
1 AAAATTAT
102682951 ATAGTTAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAATTATTCAAAAAAT
Found at i:102687869 original size:27 final size:26
Alignment explanation
Indices: 102687838--102687895 Score: 107
Period size: 27 Copynumber: 2.2 Consensus size: 26
102687828 AAAATTAGCA
102687838 TGTATAATAAAATAATAAGATAATAGG
1 TGTATAATAAAATAATAAGATAATA-G
102687865 TGTATAATAAAATAATAAGATAATAG
1 TGTATAATAAAATAATAAGATAATAG
102687891 TGTAT
1 TGTAT
102687896 GACATGCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (26 bp):
TGTATAATAAAATAATAAGATAATAG
Found at i:102689332 original size:35 final size:35
Alignment explanation
Indices: 102689286--102689357 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
102689276 ATCTGATACA
*
102689286 TTATATTAATTTTTAATCACATAAATAGATGAAAT
1 TTATACTAATTTTTAATCACATAAATAGATGAAAT
102689321 TTATACTAATTTTTAATCACATAAATAGATGAAAT
1 TTATACTAATTTTTAATCACATAAATAGATGAAAT
102689356 TT
1 TT
102689358 TTTAACAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (35 bp):
TTATACTAATTTTTAATCACATAAATAGATGAAAT
Found at i:102692909 original size:21 final size:22
Alignment explanation
Indices: 102692883--102692941 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
102692873 GTTTTAAGAA
*
102692883 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
102692904 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
102692926 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
102692942 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:102692956 original size:26 final size:24
Alignment explanation
Indices: 102692912--102692961 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
102692902 ATTTGTTTTA
*
102692912 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
102692936 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
102692962 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:102693571 original size:18 final size:18
Alignment explanation
Indices: 102693532--102693574 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
102693522 TTTTAATTAA
* *
102693532 TAATTATATTTTATATTT
1 TAATTATATTTTAAATTG
102693550 TAATTAT-TTTTAAATATG
1 TAATTATATTTTAAAT-TG
102693568 TAATTAT
1 TAATTAT
102693575 CACATCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TAATTATATTTTAAATTG
Found at i:102696270 original size:26 final size:26
Alignment explanation
Indices: 102696222--102696298 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 26
102696212 TAAATAATCT
* **
102696222 AAAACTTATAAAAAATATTTAAAAATA
1 AAAAATTA-AAAAAATACATAAAAATA
*
102696249 AAAAATTAAAAAAATACATAAAATTA
1 AAAAATTAAAAAAATACATAAAAATA
* * *
102696275 ATAAA-GAAAAACA-ACATAAAAATA
1 AAAAATTAAAAAAATACATAAAAATA
102696299 TATAAATTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 10 0.24
25 6 0.14
26 19 0.45
27 7 0.17
ACGTcount: A:0.71, C:0.05, G:0.01, T:0.22
Consensus pattern (26 bp):
AAAAATTAAAAAAATACATAAAAATA
Found at i:102696271 original size:18 final size:16
Alignment explanation
Indices: 102696242--102696275 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
102696232 AAAAATATTT
102696242 AAAAATAAAAAATTAA
1 AAAAATAAAAAATTAA
102696258 AAAAATACATAAAATTAA
1 AAAAATA-A-AAAATTAA
102696276 TAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAATAAAAAATTAA
Found at i:102696284 original size:25 final size:25
Alignment explanation
Indices: 102696256--102696304 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
102696246 ATAAAAAATT
*
102696256 AAAAAAATACATAAAATTA-ATAAAG
1 AAAAAAA-ACATAAAAATATATAAAG
*
102696281 AAAAACAACATAAAAATATATAAA
1 AAAAAAAACATAAAAATATATAAA
102696305 TTGTTATGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.18
Consensus pattern (25 bp):
AAAAAAAACATAAAAATATATAAAG
Found at i:102696446 original size:20 final size:21
Alignment explanation
Indices: 102696411--102696456 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
102696401 GATTAAAGGT
* *
102696411 TAAATTTAACTGAAAATAATA
1 TAAATTTAAATGAAAAAAATA
*
102696432 -AAATTTAAATTAAAAAAATA
1 TAAATTTAAATGAAAAAAATA
102696452 TAAAT
1 TAAAT
102696457 ATTATCTCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAATTTAAATGAAAAAAATA
Found at i:102702724 original size:5 final size:5
Alignment explanation
Indices: 102702714--102702741 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
102702704 CTGTGTATTC
102702714 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
102702742 TCACAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Done.