Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 32 of 320
Found at i:9127143 original size:22 final size:21
Alignment explanation
Indices: 9127105--9127167 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 21
9127095 GTTGTAATTT
*
9127105 TAAATATATAAAAAAATAAAAA
1 TAAAAATA-AAAAAAATAAAAA
9127127 TAAAAATAAAAATAAATAAAAA
1 TAAAAATAAAAA-AAATAAAAA
* *
9127149 TTAAATTAAATTAAAAATA
1 TAAAAATAAA--AAAAATA
9127168 TAATCTCTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 4 0.11
22 24 0.69
23 5 0.14
24 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAAAATAAAAAAAATAAAAA
Found at i:9128291 original size:14 final size:15
Alignment explanation
Indices: 9128265--9128299 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
9128255 TGCTGTCATG
9128265 GAAGAGTAAGAAGAA
1 GAAGAGTAAGAAGAA
9128280 GAAGAG-AAGAAGAA
1 GAAGAGTAAGAAGAA
9128294 GAAGAG
1 GAAGAG
9128300 GGCAGCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.37, T:0.03
Consensus pattern (15 bp):
GAAGAGTAAGAAGAA
Found at i:9128324 original size:13 final size:13
Alignment explanation
Indices: 9128306--9128340 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
9128296 AGAGGGCAGC
* *
9128306 AAGAAAGGAAAGA
1 AAGAAAGAAAAAA
9128319 AAGAAAGAAAAAA
1 AAGAAAGAAAAAA
9128332 AAGAAAGAA
1 AAGAAAGAA
9128341 GAGAGACGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAAA
Found at i:9128769 original size:11 final size:11
Alignment explanation
Indices: 9128753--9128782 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9128743 TAAATTTAAG
*
9128753 AATTAAATTTC
1 AATTAAATTCC
9128764 AATTAAATTCC
1 AATTAAATTCC
9128775 AATTAAAT
1 AATTAAAT
9128783 CAACAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (11 bp):
AATTAAATTCC
Found at i:9129095 original size:27 final size:27
Alignment explanation
Indices: 9129057--9129113 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
9129047 TGGCAGCAGC
9129057 ACCGGTGCCGCCTATAGGGTACCCTCA
1 ACCGGTGCCGCCTATAGGGTACCCTCA
*
9129084 ACCGGTGCCGCCTATGGGGTACCCTCA
1 ACCGGTGCCGCCTATAGGGTACCCTCA
9129111 ACC
1 ACC
9129114 TATATATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.18, C:0.39, G:0.26, T:0.18
Consensus pattern (27 bp):
ACCGGTGCCGCCTATAGGGTACCCTCA
Found at i:9131385 original size:6 final size:6
Alignment explanation
Indices: 9131360--9131410 Score: 77
Period size: 6 Copynumber: 8.3 Consensus size: 6
9131350 AAAAGAAAAT
9131360 AATAAA TAAT-AA AATAAAA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA -AATAAA AAT-AAA AATAAA AATAAA AATAAA AATAAA AATAAA
9131409 AA
1 AA
9131411 GAAAGATTGG
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
5 3 0.07
6 31 0.74
7 8 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:9131410 original size:18 final size:19
Alignment explanation
Indices: 9131350--9131410 Score: 81
Period size: 18 Copynumber: 3.2 Consensus size: 19
9131340 AAAAAAAAAG
*
9131350 AAAAGAAAATAATAAATAAT-
1 AAAATAAAA-AATAAA-AATA
9131370 AAAATAAAAAATAAAAATA
1 AAAATAAAAAATAAAAATA
9131389 AAAAT-AAAAATAAAAATA
1 AAAATAAAAAATAAAAATA
9131407 AAAA
1 AAAA
9131411 GAAAGATTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
18 20 0.51
19 11 0.28
20 8 0.21
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (19 bp):
AAAATAAAAAATAAAAATA
Found at i:9137857 original size:26 final size:26
Alignment explanation
Indices: 9137820--9137872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9137810 AGTGGTACTT
*
9137820 AAACTATCATTCCGTTACCCGGTTCA
1 AAACTATCATTCCGTTACCCAGTTCA
*
9137846 AAACTATTATTCCGTTACCCAGTTCA
1 AAACTATCATTCCGTTACCCAGTTCA
9137872 A
1 A
9137873 CCTTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (26 bp):
AAACTATCATTCCGTTACCCAGTTCA
Found at i:9146710 original size:21 final size:21
Alignment explanation
Indices: 9146686--9146725 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9146676 AACCAAATTT
9146686 TATATAAAATATAAAAAATCA
1 TATATAAAATATAAAAAATCA
* *
9146707 TATATAATATATAATAAAT
1 TATATAAAATATAAAAAAT
9146726 TTTAAACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TATATAAAATATAAAAAATCA
Found at i:9146716 original size:26 final size:25
Alignment explanation
Indices: 9146661--9146724 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
9146651 AATTTAAAAA
* *
9146661 AATATAAATTAAAAAAACCAAATTT
1 AATATAAAATAAAAAAACCAAATAT
* * *
9146686 TATATAAAATATAAAAAATCATATAT
1 AATATAAAATA-AAAAAACCAAATAT
*
9146712 AATATATAATAAA
1 AATATAAAATAAA
9146725 TTTTAAACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AATATAAAATAAAAAAACCAAATAT
Found at i:9146814 original size:46 final size:46
Alignment explanation
Indices: 9146761--9146851 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
9146751 AATATATAAA
* * *
9146761 TATATAAAAAT-CAAATATTATATAAATATTGAAATTTAAAAAAATT
1 TATATAAAAATAAAAAAATTATATAAAAATTGAAA-TTAAAAAAATT
* *
9146807 TATATAAAATTAAAAAAATTATATAAAAATTTAAATTAAAAAAAT
1 TATATAAAAATAAAAAAATTATATAAAAATTGAAATTAAAAAAAT
9146852 CTAAAATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 20 0.51
47 19 0.49
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (46 bp):
TATATAAAAATAAAAAAATTATATAAAAATTGAAATTAAAAAAATT
Found at i:9146816 original size:21 final size:21
Alignment explanation
Indices: 9146792--9146841 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 21
9146782 ATAAATATTG
9146792 AAATTTAAAAAAATT-TATATA
1 AAATTTAAAAAAATTATATA-A
9146813 AAA-TTAAAAAAATTATATAA
1 AAATTTAAAAAAATTATATAA
9146833 AAATTTAAA
1 AAATTTAAA
9146842 TTAAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATTTAAAAAAATTATATAA
Found at i:9146837 original size:20 final size:20
Alignment explanation
Indices: 9146796--9146834 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
9146786 ATATTGAAAT
9146796 TTAAAAAAATTTATATAAAA
1 TTAAAAAAATTTATATAAAA
9146816 TTAAAAAAA-TTATATAAAA
1 TTAAAAAAATTTATATAAAA
9146835 ATTTAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAAAAAAATTTATATAAAA
Found at i:9146874 original size:16 final size:16
Alignment explanation
Indices: 9146822--9146875 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 16
9146812 AAAATTAAAA
*
9146822 AAATTATATAAAAATTT
1 AAATTATA-AAAAATAT
*
9146839 AAATTA-AAAAAATCT
1 AAATTATAAAAAATAT
*
9146854 AAAATTATAAAACATAT
1 -AAATTATAAAAAATAT
9146871 AAATT
1 AAATT
9146876 GAAAATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
15 7 0.22
16 12 0.38
17 13 0.41
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTATAAAAAATAT
Found at i:9146874 original size:23 final size:21
Alignment explanation
Indices: 9146854--9146895 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
9146844 AAAAAAATCT
9146854 AAAATTATAAAACATATAAATTG
1 AAAATTATAAAA-ATA-AAATTG
*
9146877 AAAATTTTAAAAATAAAAT
1 AAAATTATAAAAATAAAAT
9146896 ATTATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAATTATAAAAATAAAATTG
Found at i:9147003 original size:33 final size:33
Alignment explanation
Indices: 9146941--9147005 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
9146931 TTTCAAAAAC
* *
9146941 TCTAAATTCTAAAAATTCTAATATATATATATA
1 TCTAAATTCTAAAAATTCAAAAATATATATATA
*
9146974 TCTAAATTTCTAAAAATT-AAAAATTTATATAT
1 TCTAAA-TTCTAAAAATTCAAAAATATATATAT
9147006 GTTTTGGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 17 0.61
34 11 0.39
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (33 bp):
TCTAAATTCTAAAAATTCAAAAATATATATATA
Found at i:9147030 original size:20 final size:20
Alignment explanation
Indices: 9147005--9147053 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
9146995 AATTTATATA
9147005 TGTTTTGGATGAACTTTGTC
1 TGTTTTGGATGAACTTTGTC
*
9147025 TGTTTTGGATGAAGTTTGTC
1 TGTTTTGGATGAACTTTGTC
*
9147045 TATTTTGGA
1 TGTTTTGGA
9147054 AATTTAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.16, C:0.06, G:0.27, T:0.51
Consensus pattern (20 bp):
TGTTTTGGATGAACTTTGTC
Found at i:9151636 original size:16 final size:15
Alignment explanation
Indices: 9151606--9151635 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
9151596 TATTCTAAAA
9151606 AAAATTAAATATTTT
1 AAAATTAAATATTTT
9151621 AAAATTAAATATTTT
1 AAAATTAAATATTTT
9151636 TCTAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTAAATATTTT
Found at i:9157082 original size:25 final size:25
Alignment explanation
Indices: 9157046--9157161 Score: 78
Period size: 25 Copynumber: 4.6 Consensus size: 25
9157036 AATATCAGGT
9157046 AGCTCTAT-AGAGCTATTAATCGGAA
1 AGCTC-ATGAGAGCTATTAATCGGAA
** * *
9157071 AGCTTGTGAGAGCCATATAAT-GGGA
1 AGCTCATGAGAGCTAT-TAATCGGAA
* * *
9157096 TGCTCATGAGAGCTAAATAA-AGGAA
1 AGCTCATGAGAGCT-ATTAATCGGAA
* *
9157121 AGCTCGTGAGAGACTATT-ATCGGGA
1 AGCTCATGAGAG-CTATTAATCGGAA
*
9157146 CGCTCATGAGAGCTAT
1 AGCTCATGAGAGCTAT
9157162 GGTGTTTCTG
Statistics
Matches: 68, Mismatches: 17, Indels: 13
0.69 0.17 0.13
Matches are distributed among these distances:
24 6 0.09
25 55 0.81
26 7 0.10
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.24
Consensus pattern (25 bp):
AGCTCATGAGAGCTATTAATCGGAA
Found at i:9157109 original size:50 final size:49
Alignment explanation
Indices: 9157054--9157161 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 49
9157044 GTAGCTCTAT
* * * *
9157054 AGAGCTATTAATCGGAAAGCTTGTGAGAGCCATATAAT-GGGATGCTCATG
1 AGAGCTATTAA-AGGAAAGCTCGTGAGAGAC-TATAATCGGGACGCTCATG
* *
9157104 AGAGCTAAATAAAGGAAAGCTCGTGAGAGACTATTATCGGGACGCTCATG
1 AGAGCT-ATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCATG
9157154 AGAGCTAT
1 AGAGCTAT
9157162 GGTGTTTCTG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
49 6 0.12
50 39 0.80
51 4 0.08
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (49 bp):
AGAGCTATTAAAGGAAAGCTCGTGAGAGACTATAATCGGGACGCTCATG
Found at i:9160677 original size:19 final size:19
Alignment explanation
Indices: 9160635--9160691 Score: 73
Period size: 18 Copynumber: 3.1 Consensus size: 19
9160625 TACTTCATGC
* *
9160635 AATTTTTTTTAAAATTCTT
1 AATTTTTTTTATAATTTTT
*
9160654 -ATTTTTTTT-GAATTTTT
1 AATTTTTTTTATAATTTTT
9160671 AATTTTTTTTATAATTTTT
1 AATTTTTTTTATAATTTTT
9160690 AA
1 AA
9160692 ATTATGTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 6 0.18
18 18 0.55
19 9 0.27
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
AATTTTTTTTATAATTTTT
Found at i:9164927 original size:17 final size:15
Alignment explanation
Indices: 9164900--9164938 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
9164890 ATATAAGAAC
*
9164900 ATTTTATTATTAAATT
1 ATTTTAATATT-AATT
9164916 ATATTTAATATTAATT
1 AT-TTTAATATTAATT
9164932 ATTTTAA
1 ATTTTAA
9164939 ATTGTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 8 0.38
17 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTAATATTAATT
Found at i:9165141 original size:59 final size:58
Alignment explanation
Indices: 9165077--9165515 Score: 166
Period size: 59 Copynumber: 7.3 Consensus size: 58
9165067 ATTATTTTAA
9165077 ATTTTATTA-AATCATATATTTTAATTAAAATATTTTTAATATTAATTACTTCAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTA-TTCAAATTAT
* * * *** * * *
9165136 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATT--AA-GA-
1 ATTTTATAGAATCATATATT-TTA-ATTA--AAA-T-AT-TTTTAATATTAATTATTCAAATTAT
*
9165197 ATTTTATTA-AATTATATATTTTAATTAAAATATTTTTAATATTAATTAATTCAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATT-ATTCAAATTAT
* * * ** * ** * ** * * *
9165256 ATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATT-TTGATTATTAAGA
1 ATTTTATAGAATCATATATTTTAATTAAAATATTTTTA-ATATTAATTATTCA-AATT-A-T
* * * *
9165317 ATTTTATTA-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTAT-TCAAATTAT
* * * * *** * *
9165376 CTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATT-TT-TAA-GA-
1 ATTTTATAGAATCATATATT-TTAATT-A--AAA-T-AT-TTTTAATATTAATTATTCAAATTAT
* * * * *
9165437 ATTTTACTA-AATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTAT
1 ATTTTA-TAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTAT-TCAAATTAT
*
9165496 ATTTTATAGTATCATATATT
1 ATTTTATAGAATCATATATT
9165516 ATGATTTGAG
Statistics
Matches: 269, Mismatches: 74, Indels: 74
0.65 0.18 0.18
Matches are distributed among these distances:
54 18 0.07
55 8 0.03
56 3 0.01
57 9 0.03
58 13 0.05
59 77 0.29
60 29 0.11
61 63 0.23
62 10 0.04
63 10 0.04
64 3 0.01
65 7 0.03
66 19 0.07
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (58 bp):
ATTTTATAGAATCATATATTTTAATTAAAATATTTTTAATATTAATTATTCAAATTAT
Found at i:9165201 original size:120 final size:120
Alignment explanation
Indices: 9165076--9165605 Score: 852
Period size: 120 Copynumber: 4.4 Consensus size: 120
9165066 AATTATTTTA
* * *
9165076 AATTTTATTAAATCATATATTTTAATTAAAATATTTTTAATATTAATTACT-TCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTA-TGTCAAATTATATTT
* *
9165140 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
9165196 AATTTTATTAAATTATATATTTTAATTAAAATATTTTTAATATTAATTAAT-TCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATT-ATGTCAAATTATATTT
* *
9165260 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
9165316 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
* *
9165381 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* * *
9165436 AATTTTACTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
9165501 ATAGTATCATATATTATGATTTGAGTAAATTCAT-TAAG-ATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
* *
9165554 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATTATTATGT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGT
9165606 TTAAATATAA
Statistics
Matches: 391, Mismatches: 17, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
118 63 0.16
119 6 0.02
120 321 0.82
121 1 0.00
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTCAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:9165317 original size:16 final size:15
Alignment explanation
Indices: 9165296--9165325 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9165286 TAAATTCATA
9165296 TAAGAATTTTGATTAT
1 TAAGAATTTT-ATTAT
9165312 TAAGAATTTTATTA
1 TAAGAATTTTATTA
9165326 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (15 bp):
TAAGAATTTTATTAT
Found at i:9165345 original size:18 final size:17
Alignment explanation
Indices: 9165317--9165351 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9165307 ATTATTAAGA
*
9165317 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9165334 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9165352 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9165471 original size:16 final size:16
Alignment explanation
Indices: 9165450--9165496 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
9165440 TTACTAAATT
9165450 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
9165466 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
9165481 AT-TATGTTAAATTATA
1 ATATAT-TTTAATTATA
9165497 TTTTATAGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:9165476 original size:15 final size:15
Alignment explanation
Indices: 9165446--9165496 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
9165436 AATTTTACTA
9165446 AATTAT-ATAT-TTT
1 AATTATAATATATTT
9165459 AATTATAATATATTT
1 AATTATAATATATTT
*
9165474 AATAATAAT-TATGTT
1 AATTATAATATAT-TT
9165489 AAATTATA
1 -AATTATA
9165497 TTTTATAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 6 0.19
14 7 0.22
15 13 0.41
16 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTATAATATATTT
Found at i:9165572 original size:59 final size:58
Alignment explanation
Indices: 9165149--9165574 Score: 195
Period size: 59 Copynumber: 7.1 Consensus size: 58
9165139 TTATAGTATC
* *
9165149 ATATATTATGATTTTAGTAAATTCATATAAGAATGTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGA-TTTAGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
9165210 ATATATT-TTAATTA--AAATAT-TTTTA-ATATTAATTAATTCAAATTATATTTTA-TAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATT-ATT--AA-GA-ATTTTATTA-AATT
* *
9165269 ATATATTATGATTTTAGTAAATTCATATAAGAATTTTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGA-TTTAGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
9165330 ATATATT-TTAATTA--AAATAT-ATTTA-ATAATAATTATGTTA-AATTATCTTTTATAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATTAT-TAAGAATT-T-TATTA-A--ATT
* *
9165389 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTTTTAAGAATTTTACTAAATT
1 ATATATTATGATTT-AGTAAATTCAT-TAAG-ATATTAATTATTAAGAATTTTATTAAATT
* * * * * * *
9165450 ATATATT-TTAATTA-T-AATAT-ATTTA-ATAATAATTATGTTAAATTATATTTTA-TAGTATC
1 ATATATTATGATTTAGTAAAT-TCATTAAGATATTAATTA--TT-AA-GA-ATTTTATTA-AATT
*
9165509 ATATATTATGATTTGAGTAAATTCATTAAGATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTT-AGTAAATTCATTAAGATATTAATTATTAAGAATTTTATTAAATT
9165568 ATATATT
1 ATATATT
9165575 TTAATTATAA
Statistics
Matches: 267, Mismatches: 52, Indels: 94
0.65 0.13 0.23
Matches are distributed among these distances:
54 27 0.10
55 6 0.02
56 12 0.04
57 21 0.08
58 10 0.04
59 61 0.23
60 21 0.08
61 38 0.14
62 9 0.03
63 21 0.08
64 15 0.06
65 6 0.02
66 20 0.07
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
ATATATTATGATTTAGTAAATTCATTAAGATATTAATTATTAAGAATTTTATTAAATT
Found at i:9166414 original size:13 final size:13
Alignment explanation
Indices: 9166396--9166420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9166386 GAGAAATTAC
9166396 TAAATAAGAATAT
1 TAAATAAGAATAT
9166409 TAAATAAGAATA
1 TAAATAAGAATA
9166421 AATTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (13 bp):
TAAATAAGAATAT
Found at i:9176680 original size:55 final size:55
Alignment explanation
Indices: 9176596--9176714 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 55
9176586 CAATAGGTCT
* * *
9176596 TCATATAGGGTTCAGGTATGGTTTAAGTTGGAAATGGTGTTTATATTCCTATGAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
* *
9176651 TCATATAGGGTACATGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATTAC
1 TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
9176706 TCATATAGG
1 TCATATAGG
9176715 CCAATTAGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.39
Consensus pattern (55 bp):
TCATATAGGGTACAGGTATGGTTCAAGTTGGAAATGGTGCTTATATTCCTATGAC
Found at i:9182263 original size:24 final size:24
Alignment explanation
Indices: 9182231--9182279 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
9182221 CCAAACTATG
9182231 ACTTTTATATGCAATTATATTGTA
1 ACTTTTATATGCAATTATATTGTA
9182255 ACTTTTATATGCAATTATATTGTA
1 ACTTTTATATGCAATTATATTGTA
9182279 A
1 A
9182280 TTATGGATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.08, T:0.49
Consensus pattern (24 bp):
ACTTTTATATGCAATTATATTGTA
Found at i:9184851 original size:43 final size:43
Alignment explanation
Indices: 9184787--9184983 Score: 209
Period size: 43 Copynumber: 4.6 Consensus size: 43
9184777 CATAGGATTC
*
9184787 CGATATGTGATTTCGTGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGTAAGACCATGTTTGGGACGTTGGCAT
* *
9184830 CGATATGTGATTTCATATAAGACCATGTTTGGGACGTTGGCAT
1 CGATATGTGATTTCGTGTAAGACCATGTTTGGGACGTTGGCAT
* * * **
9184873 CGATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGTGT
1 CGATATGTGATTT-CGTGTAAGACCATGTTTGGGACGTTGGCAT
* * * ** *
9184917 TGTATATG-G-TTTCGTGTAAGACCCTGTCTGGGACAATGGCTT
1 CG-ATATGTGATTTCGTGTAAGACCATGTTTGGGACGTTGGCAT
* * *
9184959 CGATATTTGATTACATGTAAGACCA
1 CGATATGTGATTTCGTGTAAGACCA
9184984 CATCCGGGAC
Statistics
Matches: 129, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
41 4 0.03
42 28 0.22
43 67 0.52
44 26 0.20
45 4 0.03
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (43 bp):
CGATATGTGATTTCGTGTAAGACCATGTTTGGGACGTTGGCAT
Found at i:9184949 original size:86 final size:88
Alignment explanation
Indices: 9184787--9185006 Score: 236
Period size: 86 Copynumber: 2.6 Consensus size: 88
9184777 CATAGGATTC
* * * *
9184787 CGATATGTGATTT-CGTGTAAGACCACGTTTGGGACGTTGGCATCG-ATATGTGATTTCATATAA
1 CGATTTGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCGTTGTATATGTGATTTCATATAA
* **
9184850 GACCATGTTTGGGACGTTGGCAT
66 GACCATGTCTGGGACAATGGCAT
* * * * *
9184873 CGATTTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGTGTTGTATATG-G-TTTCGTGTAA
1 CGATTTGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCGTTGTATATGTGATTTCATATAA
* *
9184936 GACCCTGTCTGGGACAATGGCTT
66 GACCATGTCTGGGACAATGGCAT
* * *
9184959 CGATATT-TGA-TTACATGTAAGACCACATCCGGGACGTTGGCGTTGTAT
1 CGAT-TTGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCGTTGTAT
9185007 GAGTTTATGA
Statistics
Matches: 111, Mismatches: 20, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
85 32 0.29
86 45 0.41
87 29 0.26
88 5 0.05
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (88 bp):
CGATTTGTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCGTTGTATATGTGATTTCATATAA
GACCATGTCTGGGACAATGGCAT
Found at i:9199326 original size:18 final size:18
Alignment explanation
Indices: 9199300--9199334 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9199290 TAGTCAAACG
*
9199300 AATCGAATTATTTGAATT
1 AATCAAATTATTTGAATT
9199318 AATCAAATTATTTGAAT
1 AATCAAATTATTTGAAT
9199335 CAACTCGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (18 bp):
AATCAAATTATTTGAATT
Found at i:9199552 original size:21 final size:22
Alignment explanation
Indices: 9199528--9199578 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
9199518 AATATCCCCC
9199528 CCCCCAA-TTTTACTATCTCAA
1 CCCCCAAGTTTTACTATCTCAA
*
9199549 CCCCCAATGTTTTACTCTCTCAA
1 CCCCCAA-GTTTTACTATCTCAA
9199572 CCCCCAA
1 CCCCCAA
9199579 AACATTTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 7 0.26
23 20 0.74
ACGTcount: A:0.25, C:0.43, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCCCAAGTTTTACTATCTCAA
Found at i:9199605 original size:19 final size:19
Alignment explanation
Indices: 9199572--9199610 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
9199562 ACTCTCTCAA
9199572 CCCCCAAAACATTTTACTTT
1 CCCCCAAAACATTTTA-TTT
9199592 CCCCCAAAAC-TTTTATTT
1 CCCCCAAAACATTTTATTT
9199610 C
1 C
9199611 TCACCTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (19 bp):
CCCCCAAAACATTTTATTT
Found at i:9201507 original size:19 final size:18
Alignment explanation
Indices: 9201483--9201521 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9201473 CCTAGTGGTC
*
9201483 CTTGGAGACAGTGTTCGCA
1 CTTGGAG-CAGTGTTCACA
*
9201502 CTTGGAGGAGTGTTCACA
1 CTTGGAGCAGTGTTCACA
9201520 CT
1 CT
9201522 AAGAAGCGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (18 bp):
CTTGGAGCAGTGTTCACA
Found at i:9206971 original size:18 final size:19
Alignment explanation
Indices: 9206924--9206977 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 19
9206914 GATAATTCAT
9206924 AACAAATTTTAAAAAAAATAC
1 AACAAATTTT--AAAAAATAC
9206945 AA-AATATTTTAAAAAAT-C
1 AACAA-ATTTTAAAAAATAC
9206963 AACAAA-TTTAAAAAA
1 AACAAATTTTAAAAAA
9206978 AGTTTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 9 0.29
18 4 0.13
19 9 0.29
20 2 0.06
21 7 0.23
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (19 bp):
AACAAATTTTAAAAAATAC
Found at i:9206978 original size:18 final size:19
Alignment explanation
Indices: 9206924--9206978 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 19
9206914 GATAATTCAT
9206924 AACAAATTTTAAAAAAAATAC
1 AACAAA-TTT-AAAAAAATAC
*
9206945 AA-AATATTTTAAAAAAT-C
1 AACAA-ATTTAAAAAAATAC
9206963 AACAAATTTAAAAAAA
1 AACAAATTTAAAAAAA
9206979 GTTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 13 0.43
19 9 0.30
20 5 0.17
21 3 0.10
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.25
Consensus pattern (19 bp):
AACAAATTTAAAAAAATAC
Found at i:9208575 original size:29 final size:28
Alignment explanation
Indices: 9208503--9208657 Score: 148
Period size: 29 Copynumber: 5.3 Consensus size: 28
9208493 GGTGTATTAG
*
9208503 CGACCATCGAATATGAAAAGGGATGGTTT
1 CGACCATC-AATATGAAAAGGGATGGTTA
* ** * *
9208532 TGAATATCTATTATGAAAAGGGATGGTGA
1 CGACCATC-AATATGAAAAGGGATGGTTA
*
9208561 CGACCATCAACTATGAAAAGGGATGGTGA
1 CGACCATCAA-TATGAAAAGGGATGGTTA
* * *
9208590 CGACCATCGATTAATGAAAATGGATGGTTT
1 CGACCATC-AAT-ATGAAAAGGGATGGTTA
**
9208620 CGACCATCGAATATGAAAAGGGACAGTTA
1 CGACCATC-AATATGAAAAGGGATGGTTA
9208649 CGACCATCA
1 CGACCATCA
9208658 TTTAGCACAC
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
28 2 0.02
29 75 0.73
30 26 0.25
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (28 bp):
CGACCATCAATATGAAAAGGGATGGTTA
Found at i:9208626 original size:59 final size:58
Alignment explanation
Indices: 9208503--9208656 Score: 184
Period size: 59 Copynumber: 2.6 Consensus size: 58
9208493 GGTGTATTAG
** ** *
9208503 CGACCATCGAATATGAAAAGGGATGGTTTTGAATATCTATTATGAAAAGGGATGGTGA
1 CGACCATCGAATATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTGA
* * **
9208561 CGACCATC-AACTATGAAAAGGGATGGTGACGACCATCGATTAATGAAAATGGATGGTTT
1 CGACCATCGAA-TATGAAAAGGGATGGTTACGACCATCGATT-ATGAAAAGGGATGGTGA
**
9208620 CGACCATCGAATATGAAAAGGGACAGTTACGACCATC
1 CGACCATCGAATATGAAAAGGGATGGTTACGACCATC
9208657 ATTTAGCACA
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
57 2 0.02
58 32 0.40
59 45 0.56
60 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.23
Consensus pattern (58 bp):
CGACCATCGAATATGAAAAGGGATGGTTACGACCATCGATTATGAAAAGGGATGGTGA
Found at i:9210907 original size:25 final size:26
Alignment explanation
Indices: 9210869--9210976 Score: 91
Period size: 25 Copynumber: 4.3 Consensus size: 26
9210859 CATGTAAACT
**
9210869 GGAAGCTCTTTCGAGCCATATAA-CG
1 GGAAGCTCAATCGAGCCATATAATCG
***
9210894 GGAAGCTCAATCGAGTTGTAT-ATCG
1 GGAAGCTCAATCGAGCCATATAATCG
*
9210919 AGAAGCTC-ATGCGAGCCATA-AATCG
1 GGAAGCTCAAT-CGAGCCATATAATCG
** *
9210944 GGAAGCTCAAGAGAGTCAT-TAATCG
1 GGAAGCTCAATCGAGCCATATAATCG
9210969 GGAAGCTC
1 GGAAGCTC
9210977 GTGAGAGCCA
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
24 3 0.05
25 61 0.94
26 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (26 bp):
GGAAGCTCAATCGAGCCATATAATCG
Found at i:9210974 original size:50 final size:50
Alignment explanation
Indices: 9210869--9210986 Score: 125
Period size: 50 Copynumber: 2.4 Consensus size: 50
9210859 CATGTAAACT
* * **
9210869 GGAAGCTCTTTCGAGCCATATAACGGGAAGCTCAATCGAGTTGTATATCG
1 GGAAGCTCATGCGAGCCATATAACGGGAAGCTCAAGAGAGTTGTATATCG
*
9210919 AGAAGCTCATGCGAGCCATA-AATCGGGAAGCTCAAGAGAGTCAT-TA-ATCG
1 GGAAGCTCATGCGAGCCATATAA-CGGGAAGCTCAAGAGAGT--TGTATATCG
* *
9210969 GGAAGCTCGTGAGAGCCA
1 GGAAGCTCATGCGAGCCA
9210987 AATATTGGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
49 2 0.04
50 52 0.91
51 2 0.04
52 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (50 bp):
GGAAGCTCATGCGAGCCATATAACGGGAAGCTCAAGAGAGTTGTATATCG
Found at i:9210982 original size:25 final size:25
Alignment explanation
Indices: 9210915--9211003 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
9210905 CGAGTTGTAT
* *
9210915 ATCGAGAAGCTCATGCGAGCCATAA
1 ATCGGGAAGCTCATGAGAGCCATAA
* * *
9210940 ATCGGGAAGCTCAAGAGAGTCATTA
1 ATCGGGAAGCTCATGAGAGCCATAA
*
9210965 ATCGGGAAGCTCGTGAGAGCCA-AA
1 ATCGGGAAGCTCATGAGAGCCATAA
* *
9210989 TATTGGGATGCTCAT
1 -ATCGGGAAGCTCAT
9211004 AAATGATGTG
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
24 1 0.02
25 50 0.98
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (25 bp):
ATCGGGAAGCTCATGAGAGCCATAA
Found at i:9212528 original size:27 final size:27
Alignment explanation
Indices: 9212471--9212530 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
9212461 TTTGCCTTTT
* *
9212471 TTATATTATTTATTATTGTATTTGTCG
1 TTATATTATTTATTATTGTATGTGTCA
* *
9212498 TTATATTA-TTATTATTATTATGTGTTA
1 TTATATTATTTATTATT-GTATGTGTCA
9212525 TTATAT
1 TTATAT
9212531 ATATCTTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (27 bp):
TTATATTATTTATTATTGTATGTGTCA
Found at i:9212748 original size:9 final size:9
Alignment explanation
Indices: 9212734--9212759 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
9212724 TATAATATAG
9212734 GTATATATT
1 GTATATATT
9212743 GTATATATT
1 GTATATATT
9212752 GTATATAT
1 GTATATAT
9212760 ATTATGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.54
Consensus pattern (9 bp):
GTATATATT
Found at i:9213083 original size:23 final size:21
Alignment explanation
Indices: 9213046--9213087 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
9213036 TATTACTATA
9213046 ACTATTATTTATTAGTATTTT
1 ACTATTATTTATTAGTATTTT
9213067 ACTATTACTATTATTAGTATT
1 ACTATTA-T-TTATTAGTATT
9213088 ATTTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
ACTATTATTTATTAGTATTTT
Found at i:9213093 original size:27 final size:25
Alignment explanation
Indices: 9213032--9213093 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 25
9213022 TTATACGTTC
*
9213032 TTATTATTACTATAACTATTATTTA
1 TTATTTTTACTATAACTATTATTTA
*
9213057 TTAGTATTTTACTATTACTATTATTAGTA
1 TTA-T-TTTTACTATAACTATTATT--TA
9213086 TTATTTTT
1 TTATTTTT
9213094 TTTAAATCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 3 0.10
26 1 0.03
27 21 0.68
28 1 0.03
29 5 0.16
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (25 bp):
TTATTTTTACTATAACTATTATTTA
Found at i:9213217 original size:26 final size:26
Alignment explanation
Indices: 9213163--9213222 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
9213153 ATATGTATGG
*
9213163 TGTATATTCTTAATATTATATATTGTA
1 TGTATATTCTTAATA-TATATATTATA
*
9213190 TGTATTTTCTTAATA-ACTATATTATA
1 TGTATATTCTTAATATA-TATATTATA
9213216 TGTATAT
1 TGTATAT
9213223 ATAGTATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 14 0.48
27 14 0.48
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (26 bp):
TGTATATTCTTAATATATATATTATA
Found at i:9213262 original size:20 final size:20
Alignment explanation
Indices: 9213237--9213276 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
9213227 TATGTACATA
9213237 TTTTTAATAT-TATTATGTAT
1 TTTTTAATATATA-TATGTAT
9213257 TTTTTAATATATATATGTAT
1 TTTTTAATATATATATGTAT
9213277 ATGTGTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTTAATATATATATGTAT
Found at i:9213577 original size:27 final size:27
Alignment explanation
Indices: 9213547--9213599 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
9213537 ATATTATATA
*
9213547 TATTTTTAATACTA-TGTATATATTTTT
1 TATTCTTAATACTACT-TATATATTTTT
* *
9213574 TATTCTTATTATTACTTATATATTTT
1 TATTCTTAATACTACTTATATATTTT
9213600 AATACATACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (27 bp):
TATTCTTAATACTACTTATATATTTTT
Found at i:9213643 original size:3 final size:3
Alignment explanation
Indices: 9213635--9213660 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9213625 TTATCATTGT
9213635 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9213661 GCTTTCAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9218824 original size:33 final size:33
Alignment explanation
Indices: 9218787--9218855 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
9218777 CTTCAGCCGC
9218787 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* * *
9218820 CGCATGCCCCTCAGCCTTGGTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
9218853 CGC
1 CGC
9218856 GTCTGACACT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.16, C:0.52, G:0.17, T:0.14
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:9219960 original size:12 final size:12
Alignment explanation
Indices: 9219943--9219994 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
9219933 TTTTTTGTTG
*
9219943 TTTATATTTTTA
1 TTTATATTATTA
9219955 TTTATATTATTA
1 TTTATATTATTA
9219967 TTAGTATCATTATTA
1 TT--TAT-ATTATTA
9219982 -TTATTATTATTA
1 TTTA-TATTATTA
9219994 T
1 T
9219995 CTCCATTACT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 22 0.65
13 1 0.03
14 4 0.12
15 7 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:9220061 original size:20 final size:21
Alignment explanation
Indices: 9220036--9220075 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
9220026 TTGTTATATT
*
9220036 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
9220056 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
9220076 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:9220095 original size:3 final size:3
Alignment explanation
Indices: 9219959--9220080 Score: 79
Period size: 3 Copynumber: 40.7 Consensus size: 3
9219949 TTTTTATTTA
* * *
9219959 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT TAT TAT CTCCAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT
* * * * *
9220007 TAT TAT TAT TAT TAT T-C TCT TGT TA- TAT TAC TAT TAT TGT TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
9220052 TAT CAC TAT TTT TCT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9220081 CTACAACTAT
Statistics
Matches: 90, Mismatches: 23, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
2 5 0.06
3 81 0.90
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:9220312 original size:23 final size:23
Alignment explanation
Indices: 9220285--9220329 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
9220275 TATTAACATA
* *
9220285 TTTTTTTACCATATTATTATTGCC
1 TTTTTATA-CATATCATTATTGCC
9220309 TTTTTATACATATCATTATTG
1 TTTTTATACATATCATTATTG
9220330 ATATTAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.24, C:0.13, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTTATACATATCATTATTGCC
Found at i:9220391 original size:15 final size:15
Alignment explanation
Indices: 9220371--9220401 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9220361 TATTATTTTC
9220371 TATTTATTACTATTA
1 TATTTATTACTATTA
9220386 TATTTATTACTATTA
1 TATTTATTACTATTA
9220401 T
1 T
9220402 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:9220508 original size:15 final size:15
Alignment explanation
Indices: 9220490--9220527 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
9220480 CCCACTTAGC
9220490 TATTATTACTATTAT
1 TATTATTACTATTAT
*
9220505 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
9220520 AATTATTA
1 TATTATTA
9220528 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:9224930 original size:6 final size:6
Alignment explanation
Indices: 9224917--9224969 Score: 85
Period size: 6 Copynumber: 9.3 Consensus size: 6
9224907 AGGCAAATGC
9224917 AAAA-A AAAAG- AAAA-A AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
9224962 AAAAGA AA
1 AAAAGA AA
9224970 CCTAACAACA
Statistics
Matches: 45, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
5 12 0.27
6 33 0.73
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:9225535 original size:4 final size:4
Alignment explanation
Indices: 9225533--9225584 Score: 86
Period size: 4 Copynumber: 12.8 Consensus size: 4
9225523 TTCAAAAAAA
*
9225533 AAAG AAAG AAAG AAAG AAAA AAAG AAAG AAAG AAAG AAAG AAAG AGAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG A-AAG
9225582 AAA
1 AAA
9225585 AAGGAGAGGC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 41 0.91
5 4 0.09
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:9226759 original size:64 final size:64
Alignment explanation
Indices: 9226653--9226780 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
9226643 TCATTCATAA
*
9226653 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
9226717 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATTGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
9226781 AGATACATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:9226906 original size:43 final size:43
Alignment explanation
Indices: 9226853--9227528 Score: 327
Period size: 43 Copynumber: 15.7 Consensus size: 43
9226843 ATCCACAAGC
*
9226853 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * *
9226896 CTTAAACCCCTAAGCAGTAGGGTAACA-GATCGAA-TTGCAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAGAT
* ** * * ** *
9226938 CTT-ATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAGA-CGA-AGGGT
1 CTTAAAC-CCCTAAGCAGTAG-GGTAACAG-GCTAA-ATTTACA-GAT
* * * ** *
9226982 CTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * *
9227025 CTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGAT
1 CTTAAACCCCTAAGCAGTAGG-GTAACAGGCTAAATTTACAGAT
* * * * **
9227068 CTT-ATCACCCTAAGCAGTAGGGAAACA-GATCAAA--GACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AAATTTAC--A-GAT
*
9227112 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * * * * **
9227155 CTT-GACACCCTAAGCAGTAGGGAAACA-GATCAAAGGTGA-TGGG
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AAA-TTTACAGAT
* * **
9227198 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* *
9227241 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
** * * * **
9227284 CTT-GTCACCCTAAGCAGTAGGGAAACA-GATCAAA--GACGAAGGGC
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AAATTTAC--A-GAT
* *
9227328 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * * * ** **
9227371 CTT-AACACCCTAAGCAGTAGAGAAACA-GATCGAAGGTA-ATGGG
1 CTTAAAC-CCCTAAGCAGTAGGGTAACAGGCT-AAATTTACA-GAT
* * * ** *
9227414 CTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGAC
1 C-TTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
* * *
9227458 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGAT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
*
9227501 CTTATAA-CCCTAAGCAGTAGGGAAACAG
1 CTTA-AACCCCTAAGCAGTAGGGTAACAG
9227529 ATCGAATGCG
Statistics
Matches: 472, Mismatches: 114, Indels: 94
0.69 0.17 0.14
Matches are distributed among these distances:
41 5 0.01
42 80 0.17
43 237 0.50
44 131 0.28
45 15 0.03
46 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (43 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGAT
Found at i:9227115 original size:87 final size:87
Alignment explanation
Indices: 9227024--9227268 Score: 300
Period size: 87 Copynumber: 2.8 Consensus size: 87
9227014 AATTTACAGA
* * * *
9227024 CCTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGATCTT-ATCACCCTAAGCAGTA
1 CCTTAACCCCCTAAGCAGTAGG-GTAACAGGCTAAATTCACAGATCTTGA-CACCCTAAGCAGTA
9227087 GGGAAACAGATCAAAGACGAAGGG
64 GGGAAACAGATCAAAGACGAAGGG
*
9227111 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACACCCTAAGCAGTAGG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTGACACCCTAAGCAGTAGG
** *
9227176 GAAACAGATCAAAGGTGATGGG
66 GAAACAGATCAAAGACGAAGGG
* * ** * *
9227198 CTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-CTT-AAACCCCTAAGCAGTAG
1 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTGACA-CCCTAAGCAGTAG
*
9227261 GGTAACAG
65 GGAAACAG
9227269 GATAAATTCA
Statistics
Matches: 141, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
85 2 0.01
86 24 0.17
87 114 0.81
88 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (87 bp):
CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTGACACCCTAAGCAGTAGG
GAAACAGATCAAAGACGAAGGG
Found at i:9227137 original size:130 final size:129
Alignment explanation
Indices: 9226851--9227185 Score: 471
Period size: 130 Copynumber: 2.6 Consensus size: 129
9226841 GAATCCACAA
9226851 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
* ** *
9226916 GGTAACAGATCGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAAGG
66 GGTAACAGATCGAATTGCAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
* * * ** *
9226980 GTCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAG
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
* *
9227045 GAG-AACAGGTTGAATT-CATAGATCTTATCACCCTAAGCAGTAG-GGAAACAGATCAAAGACGA
66 G-GTAACAGATCGAATTGC--AGATCTTATCACCCTAAGCAGTAGTGG-AACAGATCAAAGACGA
9227107 AGG
127 AGG
*
9227110 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTT-GACACCCTAAGCAGTA
1 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAAC-CCCTAAGCAGTA
*
9227174 GGGAAACAGATC
65 GGGTAACAGATC
9227186 AAAGGTGATG
Statistics
Matches: 179, Mismatches: 21, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
128 1 0.01
129 76 0.42
130 102 0.57
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (129 bp):
GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTAG
GGTAACAGATCGAATTGCAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
Found at i:9227282 original size:129 final size:130
Alignment explanation
Indices: 9227112--9227390 Score: 427
Period size: 129 Copynumber: 2.2 Consensus size: 130
9227102 GACGAAGGGC
* * *
9227112 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACACCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGACACCCTAAGCAGTAGGG
** * * * *
9227177 AAACAGATCAAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-
66 AAACAGATCAAAGACGAAGGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAT
*
9227241 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGACACCCTAAGCAGTAGGG
* *
9227306 AAACAGATCAAAGACGAAGGGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAAT
66 AAACAGATCAAAGACGAAGGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAT
9227371 CTT-AACACCCTAAGCAGTAG
1 CTTAAAC-CCCTAAGCAGTAG
9227391 AGAAACAGAT
Statistics
Matches: 136, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 120 0.88
130 16 0.12
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (130 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGACACCCTAAGCAGTAGGG
AAACAGATCAAAGACGAAGGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAAT
Found at i:9227297 original size:216 final size:216
Alignment explanation
Indices: 9226896--9227576 Score: 1016
Period size: 216 Copynumber: 3.1 Consensus size: 216
9226886 ATTTACAGAT
* * * * *
9226896 CTTAAACCCCTAAGCAGTAGGGTAACA-GATCGAA-TTGCAGATCTTATCTCCCTAAGCAGTAGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAGATCTTA-CACCCTAAGCAGTAG-
** ** * *
9226959 GG-AGTAGATCGAAGACGAAGGG-TCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
63 GGAAACAGATCGAAGGTGATGGGCT-TTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACA
*
9227022 GACCTTAAACCCCTAAGCAGTAGGAG-AACAGGTTGAATTCATAGATCTTATCACCCTAAGCAGT
127 GACCTTAAACCCCTAAGCAGTAGG-GTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGT
9227086 AGGGAAACAGATCAAAGACGAAGGGC
191 AGGGAAACAGATCAAAGACGAAGGGC
9227112 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGACACCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTT-ACACCCTAAGCAGTAGGG
*
9227177 AAACAGATCAAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-
65 AAACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
* * *
9227241 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
130 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGGG
9227306 AAACAGATCAAAGACGAAGGGC
195 AAACAGATCAAAGACGAAGGGC
* *
9227328 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCCTAAGCAGTAGAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTT-ACACCCTAAGCAGTAGGG
* *
9227393 AAACAGATCGAAGGTAATGGGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGAC
65 AAACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGAC
*
9227458 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGGG
130 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGGG
* * *
9227523 AAACAGATCGAATG-CGATGAGC
195 AAACAGATC-AAAGACGAAGGGC
*
9227545 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTA
9227577 GAAATCAAAT
Statistics
Matches: 427, Mismatches: 30, Indels: 15
0.90 0.06 0.03
Matches are distributed among these distances:
215 1 0.00
216 234 0.55
217 187 0.44
218 5 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (216 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTACACCCTAAGCAGTAGGGA
AACAGATCGAAGGTGATGGGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
TTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATCACCCTAAGCAGTAGGGA
AACAGATCAAAGACGAAGGGC
Found at i:9227451 original size:87 final size:86
Alignment explanation
Indices: 9227241--9227477 Score: 298
Period size: 87 Copynumber: 2.7 Consensus size: 86
9227231 AATTTACAGA
* * * ** *
9227241 CTTAAACCCCTAAGCAGTAGGGTAACAGGATAAATTCACAGATCTTGTCACCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGAG
9227306 AAACAGATCAAAGACGAAGGGC
66 AAACAGATCAAAGA-GAAGGGC
*
9227328 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACACCCTAAGCAGTAGAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGAG
*
9227393 AAACAGATCGAAG-GTAATGGGC
66 AAACAGATCAAAGAG-AA-GGGC
* * * ** *
9227415 TTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAA-ACCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACA-CCCTAAGCAGTAG
9227478 GGTAACAGGT
Statistics
Matches: 132, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
85 1 0.01
86 3 0.02
87 128 0.97
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGAG
AAACAGATCAAAGAGAAGGGC
Found at i:9227468 original size:130 final size:130
Alignment explanation
Indices: 9227327--9227571 Score: 357
Period size: 130 Copynumber: 1.9 Consensus size: 130
9227317 AGACGAAGGG
* *
9227327 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTA-ACACCCTAAGCAGTAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATA-ACCCTAAGCAGTAG
* * *
9227391 AGAAACAGATCGAAGGTAATGGGCTTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAG
65 AGAAACAGATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAG
9227456 A
130 A
* * * *
9227457 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGA
* * * *
9227522 GAAACAGATCGAATGCGATGAGCCTTAACCCCCTAAGTAGTAGGGTAACA
66 GAAACAGATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACA
9227572 GGCTAGAAAT
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
130 100 0.99
131 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (130 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTATAACCCTAAGCAGTAGA
GAAACAGATCGAAGGCAATGAGCCTTAACCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGA
Found at i:9227501 original size:346 final size:345
Alignment explanation
Indices: 9226850--9227571 Score: 888
Period size: 346 Copynumber: 2.1 Consensus size: 345
9226840 TGAATCCACA
* *
9226850 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAAACCCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGATCTTAAACCCCTAAGCAGTA
* * * ** *
9226915 GGGTAACAGATCGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGAAGG
66 GGGTAACAGATCAAATTACAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
* * * *
9226980 GTCTTGACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAG
131 GCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTTAAACCCCTAAGCAGTAG
* * * * * * *
9227045 GAGAACAGGTTGAATTCATAGATCTTATCACCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGG
196 GAGAACAGATCGAAGTAATAGATCTTAACACCCTAAGCAGTAAGGAAACAGACCAAAGAC-AAGG
* * * *
9227110 GCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTGA-CACCCTAAGCAGTA
260 ACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTT-ATAACCCTAAGCAGTA
*
9227174 GGGAAACAGATCAAAGGTGATG
324 GGGAAACAGATCAAAGGCGATG
* * *
9227196 GGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGA-CTTAAACCCCTAAGCAGTA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGATCTTAAACCCCTAAGCAGTA
*
9227260 GGGTAACAGGAT-AAATTCACAGATCTTGTCACCCTAAGCAGTAG-GGAAACAGATCAAAGACGA
66 GGGTAACA-GATCAAATT-ACAGATCTTATCACCCTAAGCAGTAGTGG-AACAGATCAAAGACGA
* * *
9227323 AGGGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTT-AACACCCTAAGCA
128 AGGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTTAAAC-CCCTAAGCA
** * *
9227387 GTA-GAGAAACAGATCGAAGGTAAT-GGGCTTTAACCCCCTAAGCAGTAAGGTAACA-AGCCGAA
192 GTAGGAG-AACAGATCGAA-GTAATAGATC-TTAACACCCTAAGCAGTAAGGAAACAGA-CC-AA
** * *
9227449 TTTAC-A-GACCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTCACAGATCTTATAACCCT
252 -AGACAAGGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTATAACCCT
* *
9227512 AAGCAGTAGGGAAACAGATCGAATGCGATG
316 AAGCAGTAGGGAAACAGATCAAAGGCGATG
*
9227542 AGCCTTAACCCCCTAAGTAGTAGGGTAACA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACA
9227572 GGCTAGAAAT
Statistics
Matches: 321, Mismatches: 44, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
345 40 0.12
346 250 0.78
347 27 0.08
348 2 0.01
349 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (345 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGATCTTAAACCCCTAAGCAGTA
GGGTAACAGATCAAATTACAGATCTTATCACCCTAAGCAGTAGTGGAACAGATCAAAGACGAAGG
GCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAACCTTAAACCCCTAAGCAGTAG
GAGAACAGATCGAAGTAATAGATCTTAACACCCTAAGCAGTAAGGAAACAGACCAAAGACAAGGA
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAGATCTTATAACCCTAAGCAGTAGG
GAAACAGATCAAAGGCGATG
Found at i:9228150 original size:17 final size:17
Alignment explanation
Indices: 9228128--9228166 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
9228118 GCCCAAATTA
9228128 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9228145 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9228162 AAAGT
1 AAAGT
9228167 TACCAGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (17 bp):
AAAGTCCATTTACAAAC
Found at i:9229419 original size:3 final size:3
Alignment explanation
Indices: 9229411--9229468 Score: 62
Period size: 3 Copynumber: 18.3 Consensus size: 3
9229401 TTTTTATTTA
* * *
9229411 TAT TAT TAT TAG TAT CAT TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT TAT
9229459 TAT TAT TAT T
1 TAT TAT TAT T
9229469 CTCTTGTTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
3 42 0.91
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:9229437 original size:21 final size:21
Alignment explanation
Indices: 9229411--9229464 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
9229401 TTTTTATTTA
*
9229411 TATTATTATTAGTAT-CATTAT
1 TATTATTATTA-TATCCATTAC
*
9229432 TATTATTATTATCTCCATTAC
1 TATTATTATTATATCCATTAC
9229453 TATTATTATTAT
1 TATTATTATTAT
9229465 TATTCTCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 28 0.93
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.57
Consensus pattern (21 bp):
TATTATTATTATATCCATTAC
Found at i:9229756 original size:23 final size:24
Alignment explanation
Indices: 9229730--9229774 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9229720 TATTAACATA
* *
9229730 ATTTTTTA-CCATATTATTATTTC
1 ATTTTTTATACATATCATTATTTC
9229753 ATTTTTTATACATATCATTATT
1 ATTTTTTATACATATCATTATT
9229775 GATATTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTTTTTATACATATCATTATTTC
Found at i:9229837 original size:15 final size:15
Alignment explanation
Indices: 9229817--9229847 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9229807 TATTATTTTC
9229817 TATTTATTACTATTA
1 TATTTATTACTATTA
9229832 TATTTATTACTATTA
1 TATTTATTACTATTA
9229847 T
1 T
9229848 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:9229854 original size:21 final size:21
Alignment explanation
Indices: 9229821--9229860 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9229811 ATTTTCTATT
* *
9229821 TATTACTATTATATTTATTAC
1 TATTACTAATATATATATTAC
*
9229842 TATTATTAATATATATATT
1 TATTACTAATATATATATT
9229861 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTACTAATATATATATTAC
Found at i:9229954 original size:15 final size:15
Alignment explanation
Indices: 9229936--9229973 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
9229926 CCCACTTAGC
9229936 TATTATTACTATTAT
1 TATTATTACTATTAT
*
9229951 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
9229966 AATTATTA
1 TATTATTA
9229974 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:9238453 original size:20 final size:18
Alignment explanation
Indices: 9238406--9238454 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
9238396 CAAGATAAAC
9238406 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
9238423 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
9238443 ATTAAATTAATA
1 ATTAAATTAATA
9238455 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:9250760 original size:81 final size:82
Alignment explanation
Indices: 9250659--9250884 Score: 255
Period size: 82 Copynumber: 2.7 Consensus size: 82
9250649 CAGACCTTAA
*
9250659 CCCTAAGCAGTAGAGAACAGG-TGAATTCATAGATCTTATCACCCTAAGCAGTA-GGAAACA-AT
1 CCCTAAGCAGTAG-GAACAGGCT-AATT-ACAGATCTTA-CACCCTAAGCAGTAGGGAAACAGAT
9250721 CAAAGACGAAGGGC-CTAACC
62 CAAAGACGAAGGGCTCTAACC
*
9250741 CCCTAAGCAGTAGGTACAGGCTAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATCAAA
1 CCCTAAGCAGTAGGAACAGGCTAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATCAAA
** * *
9250806 GGTGATGGGCTTTAACC
66 GACGAAGGGCTCTAACC
* * * *
9250823 CCCTAAGCAGTAGGAACAAGCCGAATTTACAGA-CTTAAACCCCTAAGCAGTAGCGTAAACAG
1 CCCTAAGCAGTAGGAAC-AGGCTAA-TTACAGATCTTACA-CCCTAAGCAGTAG-GGAAACAG
9250885 GATAAATTCA
Statistics
Matches: 125, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
79 14 0.11
80 16 0.13
81 23 0.18
82 35 0.28
83 10 0.08
84 20 0.16
85 7 0.06
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.18
Consensus pattern (82 bp):
CCCTAAGCAGTAGGAACAGGCTAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATCAAA
GACGAAGGGCTCTAACC
Found at i:9250929 original size:129 final size:125
Alignment explanation
Indices: 9250740--9251013 Score: 344
Period size: 129 Copynumber: 2.2 Consensus size: 125
9250730 AGGGCCTAAC
*
9250740 CCCCTAAGCAGTAGGT--ACAGGCTAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATC
1 CCCCTAAGCAGTAGGTAAACAGGATAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATC
** * * * *
9250803 AAAGGTGATGGGCTTTAACCCCCTAAGCAGTA-GG-AACAAGCCGAATTTACAGA-CTTAAA
66 AAAGACGA-AGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAATCTT-AA
*
9250862 CCCCTAAGCAGTAGCGTAAACAGGATAAATTCACAGATCTTGTCACCCCTAAGCAGTAGGGAAAC
1 CCCCTAAGCAGTAG-GTAAACAGGAT-AATT-ACAGATCTT-ACA-CCCTAAGCAGTAGGGAAAC
* *
9250927 AGATCAAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAA
61 AGATCAAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAATCTTAA
9250992 CCCCTAAGCAGTAGAG-AAACAG
1 CCCCTAAGCAGTAG-GTAAACAG
9251014 ATCGAAGGTA
Statistics
Matches: 131, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
122 14 0.11
123 2 0.02
125 6 0.05
126 4 0.03
127 9 0.07
128 23 0.18
129 38 0.29
130 32 0.24
131 3 0.02
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (125 bp):
CCCCTAAGCAGTAGGTAAACAGGATAATTACAGATCTTACACCCTAAGCAGTAGGGAAACAGATC
AAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAATCTTAA
Found at i:9250989 original size:87 final size:86
Alignment explanation
Indices: 9250856--9251095 Score: 270
Period size: 87 Copynumber: 2.8 Consensus size: 86
9250846 AATTTACAGA
* * * * *
9250856 CTTAAACCCCTAAGCAGTAGCGTAAACAGGATAAATTCACAGATCTTGTCACCCCTAAGCAGTAG
1 CTTAACCCCCTAAGCAGTAGGGT-AACAGGCTAAATTTACAGATCTT-TAACCCCTAAGCAGTAG
9250921 GGAAACAGATCAAAGACG-AA-GGC
64 GGAAACAGATCAAAG--GTAAGGGC
* *
9250944 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATC-TTAACCCCTAAGCAGTAGAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTTAACCCCTAAGCAGTAGGG
*
9251008 AAACAGATCGAAGGTAATGGGC
66 AAACAGATCAAAGGTAA-GGGC
* * * ** * *
9251030 TTTAACCCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGG
1 CTTAA-CCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTTAACCCCTAAGCAGTAGG
9251095 G
65 G
9251096 TAAAGGTTGA
Statistics
Matches: 130, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
83 1 0.01
84 2 0.02
85 29 0.22
86 8 0.06
87 51 0.39
88 39 0.30
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.19
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTTAACCCCTAAGCAGTAGGG
AAACAGATCAAAGGTAAGGGC
Found at i:9250991 original size:43 final size:43
Alignment explanation
Indices: 9250618--9251143 Score: 213
Period size: 43 Copynumber: 12.5 Consensus size: 43
9250608 AGGGTCTTGA
* ** *
9250618 CCCCTAAGCAGTAGGGTAACAAGCCGAATTT-CAGACCTTAA-
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* * * *
9250659 -CCCTAAGCAGTAGAG-AACAGG-TGAATTCATAGATCTTATC
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* * * ** ** *
9250699 ACCCTAAGCAGTA-GGAAACA--ATCAA-AGACGAAGGGCCTAAC
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTAC--AGATCTTAAC
*
9250740 CCCCTAAGCAGTA-GGT-ACAGGCT-AA-TTACAGATCTT-AC
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* * * * * * **
9250778 ACCCTAAGCAGTAGGGAAACA-GATCAAAGGTGA-TGGGCTTTAAC
1 CCCCTAAGCAGTAGGGTAACAGGAT-GAA-TTTACAGATC-TTAAC
* ** *
9250822 CCCCTAAGCAGTA-GG-AACAAGCCGAATTTACAGA-CTTAAA
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* * * **
9250862 CCCCTAAGCAGTAGCGTAAACAGGATAAATTCACAGATCTTGTC
1 CCCCTAAGCAGTAGGGT-AACAGGATGAATTTACAGATCTTAAC
* * ** **
9250906 ACCCCTAAGCAGTAGGGAAACA-GATCAA-AGACGAAGGCCTTAAC
1 -CCCCTAAGCAGTAGGGTAACAGGATGAATTTAC--AGATCTTAAC
* * *
9250950 CCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAA-
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* * ** **
9250992 CCCCTAAGCAGTAGAGAAACA-GATCGAAGGTA-ATGGGCTTTAACC
1 CCCCTAAGCAGTAGGGTAACAGGAT-GAATTTACA-GATC-TTAA-C
* * ** * *
9251037 CCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGACCTTAAA
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
* *
9251080 CCCCTAAGCAGTAGGGTAA-AGGTTGAATTCACAGATCTTATA-
1 CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTA-AC
* *
9251122 ACCCTAAGCAGTAGGGAAACAG
1 CCCCTAAGCAGTAGGGTAACAG
9251144 ATCGAATGCG
Statistics
Matches: 355, Mismatches: 93, Indels: 72
0.68 0.18 0.14
Matches are distributed among these distances:
38 19 0.05
39 21 0.06
40 41 0.12
41 49 0.14
42 69 0.19
43 77 0.22
44 35 0.10
45 42 0.12
46 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (43 bp):
CCCCTAAGCAGTAGGGTAACAGGATGAATTTACAGATCTTAAC
Found at i:9251046 original size:130 final size:130
Alignment explanation
Indices: 9250779--9251149 Score: 334
Period size: 130 Copynumber: 2.9 Consensus size: 130
9250769 AGATCTTACA
** * * *
9250779 CCCTAAGCAGTAGGGAAACAGATCAAAGGTGATGGGCTTTAACCCCCTAAGCAGTA-GG-AACAA
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGA-AGGCCTTAACCCCCTAAGCAGTAGGGTAACAG
* * * *
9250842 GCCGAATTTACAGA-CTTAAACCCCTAAGCAGTAGCGTAAACAGGAT--AAATTCACAGATCTTG
65 GCTGAATTTACAGATCTT-AACCCCTAAGCAGTAGAG-AAACA-GATCGAAAGTCACAGAGCTTG
9250904 TCAC
127 TCAC
9250908 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGG
1 CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGG
* * * *
9250973 CTAAATTTACAAATCTTAACCCCTAAGCAGTAGAGAAACAGATCGAAGGT-A-ATGGGCTT-TAA
66 CTGAATTTACAGATCTTAACCCCTAAGCAGTAGAGAAACAGATCGAAAGTCACA-GAGCTTGT--
*
9251035 CCC
128 CAC
* * * ** * *
9251038 CCCTAAGCAGTAAGGTAACA-AGCCGAATTTAC--AGACCTTAAACCCCTAAGCAGTAGGGTAA-
1 CCCTAAGCAGTAGGGAAACAGA-TC-AA-AGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAAC
* * * *
9251099 AGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGGGAAACAGATCGAA
63 AGGCTGAATTTACAGATCTTA-ACCCCTAAGCAGTAGAGAAACAGATCGAA
9251150 TGCGATGAGC
Statistics
Matches: 203, Mismatches: 27, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
128 26 0.13
129 60 0.30
130 110 0.54
131 5 0.02
132 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (130 bp):
CCCTAAGCAGTAGGGAAACAGATCAAAGACGAAGGCCTTAACCCCCTAAGCAGTAGGGTAACAGG
CTGAATTTACAGATCTTAACCCCTAAGCAGTAGAGAAACAGATCGAAAGTCACAGAGCTTGTCAC
Found at i:9251165 original size:130 final size:128
Alignment explanation
Indices: 9250943--9251185 Score: 326
Period size: 130 Copynumber: 1.9 Consensus size: 128
9250933 AAGACGAAGG
* * *
9250943 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAAATCTTAACCCCTAAGCAGTAGAG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTAAACCCTAAGCAGTAGAG
* * *
9251008 AAACAGATCGAAGGTAATGGGCTTTAACCCCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGA
66 AAACAGATCGAAGGCAATGAGCCTTAA--CCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGA
* * * *
9251073 CCTTAAACCCCTAAGCAGTAGGGTAA-AGGTTGAATTCACAGATCTTATAACCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTA-AACCCTAAGCAGTAGA
* * * *
9251137 GAAACAGATCGAATGCGATGAGCCTTAACCCCTAAGTAGTAGGGTAACA
65 GAAACAGATCGAAGGCAATGAGCCTTAACCCCTAAGCAGTAAGGTAACA
9251186 GGCTAGAAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
128 19 0.19
129 17 0.17
130 62 0.63
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (128 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTCACAAATCTTAAACCCTAAGCAGTAGAG
AAACAGATCGAAGGCAATGAGCCTTAACCCCTAAGCAGTAAGGTAACAAGCCGAATTTACAGA
Found at i:9251755 original size:17 final size:17
Alignment explanation
Indices: 9251733--9251771 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
9251723 GCCCAAATTA
9251733 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9251750 AAAGTCCATTTACAAAC
1 AAAGTCCATTTACAAAC
9251767 AAAGT
1 AAAGT
9251772 TACCAGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.49, C:0.21, G:0.08, T:0.23
Consensus pattern (17 bp):
AAAGTCCATTTACAAAC
Found at i:9252129 original size:13 final size:13
Alignment explanation
Indices: 9252111--9252135 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9252101 ACATTAGTAA
9252111 AAAATCAAGAAAC
1 AAAATCAAGAAAC
9252124 AAAATCAAGAAA
1 AAAATCAAGAAA
9252136 GGTTGATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.12, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAATCAAGAAAC
Found at i:9253029 original size:20 final size:19
Alignment explanation
Indices: 9252988--9253043 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
9252978 TTATATTTTT
9252988 TTATATTATTATTAGTATCA
1 TTATATTATTATTA-TATCA
* *
9253008 TTATTTTATTATTATCTCCA
1 TTATATTATTATTATAT-CA
9253028 TTACTATTATTATTAT
1 TTA-TATTATTATTAT
9253044 TCTCTTGTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 18 0.58
21 11 0.35
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (19 bp):
TTATATTATTATTATATCA
Found at i:9253331 original size:23 final size:24
Alignment explanation
Indices: 9253305--9253349 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9253295 TATTAACATA
* *
9253305 ATTTTTTA-CCATATTATTATTTC
1 ATTTTTTATACATATCATTATTTC
9253328 ATTTTTTATACATATCATTATT
1 ATTTTTTATACATATCATTATT
9253350 GATATTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTTTTTATACATATCATTATTTC
Found at i:9253412 original size:15 final size:15
Alignment explanation
Indices: 9253392--9253422 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
9253382 TATTATTTTC
9253392 TATTTATTACTATTA
1 TATTTATTACTATTA
9253407 TATTTATTACTATTA
1 TATTTATTACTATTA
9253422 T
1 T
9253423 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:9253429 original size:21 final size:21
Alignment explanation
Indices: 9253396--9253435 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
9253386 ATTTTCTATT
* *
9253396 TATTACTATTATATTTATTAC
1 TATTACTAATATATATATTAC
*
9253417 TATTATTAATATATATATT
1 TATTACTAATATATATATT
9253436 TTTCTTTCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTACTAATATATATATTAC
Found at i:9253528 original size:15 final size:15
Alignment explanation
Indices: 9253510--9253547 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
9253500 CCCACTTAGC
9253510 TATTATTACTATTAT
1 TATTATTACTATTAT
*
9253525 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
9253540 AATTATTA
1 TATTATTA
9253548 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:9262016 original size:20 final size:18
Alignment explanation
Indices: 9261969--9262017 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
9261959 CAAGATAAAC
9261969 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
9261986 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
9262006 ATTAAATTAATA
1 ATTAAATTAATA
9262018 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:9264035 original size:27 final size:27
Alignment explanation
Indices: 9263987--9264146 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
9263977 GCGAGGCTGC
* *
9263987 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
9264014 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
9264040 CCGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9264067 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
9264094 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
9264121 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
9264147 TACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 9 0.08
27 84 0.74
28 19 0.17
29 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9264077 original size:54 final size:54
Alignment explanation
Indices: 9264005--9264146 Score: 223
Period size: 54 Copynumber: 2.6 Consensus size: 54
9263995 GTGACGAAGT
* *
9264005 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACCGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9264059 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
9264113 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
9264147 TACGCTTCCT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.70
55 20 0.24
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:9264533 original size:8 final size:8
Alignment explanation
Indices: 9264517--9264546 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
9264507 CTCAAAATAC
9264517 CGGCTTTT
1 CGGCTTTT
*
9264525 CGGCATTT
1 CGGCTTTT
9264533 CGGCTTTT
1 CGGCTTTT
9264541 CGGCTT
1 CGGCTT
9264547 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:9267226 original size:20 final size:20
Alignment explanation
Indices: 9267201--9267239 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9267191 AATGCTATAC
*
9267201 AGAGGCACTGAAGTGCAAAA
1 AGAGGCACTAAAGTGCAAAA
9267221 AGAGGCACTAAAGTGCAAA
1 AGAGGCACTAAAGTGCAAA
9267240 CAAAGTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.15, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGGCACTAAAGTGCAAAA
Found at i:9272620 original size:47 final size:48
Alignment explanation
Indices: 9272566--9272697 Score: 194
Period size: 47 Copynumber: 2.8 Consensus size: 48
9272556 TCACATCGAT
* *
9272566 AAGTACCTATACCATGGCTCATAGCCAAATCAAGGTAACTTATCTCAG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* * *
9272614 -AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
* *
9272661 AACTACCTATACCATTGCTCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTA
9272698 TAATTCGTAC
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
47 42 0.56
48 33 0.44
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (48 bp):
AAGTACCTATACCATGGCTCGTAGCCAAATCAAGGTAACTCATCTCAG
Found at i:9276073 original size:729 final size:729
Alignment explanation
Indices: 9274389--9277307 Score: 5378
Period size: 729 Copynumber: 4.0 Consensus size: 729
9274379 ACTTGTACGC
*
9274389 AGAACTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
1 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
9274454 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
66 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
* *
9274519 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAATGAAATCTTGCAGCTCCGATACATA
131 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
* *
9274584 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACCAAGCACGAACGGTCGCAT
196 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
* *
9274649 TATCTTCGACTTTACTAAGAAATTCATTCTCCATGTTAAATTTTCTAACTTAGTAATTGAATGCG
261 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
*
9274714 GATTAACGCCTCCTTTAATATGCAATGTCATGCCAAAAAGATAATCAAAACGAAACACCGGTTAG
326 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
* *
9274779 TATCAAATAATAGTGATAAAATGTAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
391 TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
*
9274844 CTAAGGCTCAACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
456 CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
*
9274909 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGATCATATAGATCGA
521 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
*
9274974 GTTCGATTCGGAGGGATACATTTCCCTATGACCATGTGGAGATTAAAATCTCACGAAATCATAAG
586 GTTCGATTCGG-GGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAG
9275039 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGC
650 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGC
*
9275104 TTCGTACTCCCACTT
715 TTCTTACTCCCACTT
* *
9275119 AGAATTCTAAAACTGCACCAAGGCTCGAAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
1 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
9275184 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
66 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
9275249 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
131 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
* *
9275314 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTTTCCGACAAAGCACGAACGGCCGCAT
196 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
*
9275379 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATACG
261 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
* *
9275444 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAATGAAACACCGATTAG
326 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
*
9275509 TGTCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
391 TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
*
9275574 CTAAGGCTCGACGCGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
456 CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
9275639 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATA-GGCTCATATAGATCGA
521 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
* *
9275703 GTTCGGTTCAGGGGGATACATTTCCCTATGAGCATGCGGAGATTAAAATCTCACGAAATCATAAG
586 GTTCGATTC-GGGGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAG
*
9275768 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCATAGC
650 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGC
9275833 TTCTTACTCCCACTT
715 TTCTTACTCCCACTT
9275848 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
1 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
9275913 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
66 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
9275978 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
131 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
** * *
9276043 CCCTTCTGCCAAGCTATCCTTCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAATGGCCGTAT
196 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
9276108 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
261 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
9276173 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
326 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
* *
9276238 TATCAAATAATAGCGATAAAATGCAAGCATATAAAAAATAATTATAGCGTATATACGGGTAAGTA
391 TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
*
9276303 CTAAGGCTCGACGCGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
456 CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
* * *
9276368 GAGATAAGGTACCCGAACCAGCAGATTCCTCGATCCTCACCCATTATA-GGCTTATATAGATTGA
521 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
* *
9276432 GTTCGGTTCGGGGGATACATTTCCCTATGACCATGCGGAAATTAAAATCTCACGAAATCATAAGT
586 GTTCGATTCGGGGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAGT
* *
9276497 ACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCAGGAAAGTGTAGCT
651 ACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGCT
9276562 TCTTACTCCCACTT
716 TCTTACTCCCACTT
9276576 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
1 AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
9276641 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
66 ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
*
9276706 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGAGAGTGAAATCCTGCAGCTCCGATACATA
131 CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
9276771 CCCTTCTGCCAAGCTAT-CCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
196 CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
9276835 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
261 TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
9276900 GATTAACGCCTCCTTTAATATGCAATGTCATGC-AAAAAGATAATCAAAACGAAACACCGGTTAG
326 GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
*
9276964 TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGTATATACGGGTAAGTA
391 TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
9277029 CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
456 CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
*
9277094 GAGATAAGGTATCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
521 GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
*
9277159 GTTTGATTCGGGGGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAG
586 GTTCGATTC-GGGGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAG
*
9277224 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGTGTAGC
650 TACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGC
9277289 TTCTTACTCCCACTT
715 TTCTTACTCCCACTT
9277304 AGAA
1 AGAA
9277308 GGTGTGACCA
Statistics
Matches: 2124, Mismatches: 62, Indels: 8
0.97 0.03 0.00
Matches are distributed among these distances:
726 205 0.10
727 162 0.08
728 478 0.23
729 728 0.34
730 551 0.26
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (729 bp):
AGAATTCCAAAACTGCACCAAGGCTCGGAACAAATGCTTATCCACTCTAATATCTAGCAGGTAGG
ATATGTCACCATAGCTTTGGTAAAACAACTGCTTGATCCCTTCATCCCAACTAGCCCAAATGTCT
CTCAACTCTTGCAGCTCATTCTGTACTACATTGACGCGAGTGAAATCCTGCAGCTCCGATACATA
CCCTTCTGCCAAGCTATCCCCCCTCTCAGATTGTAGCCTCTCCGACTAAGCACGAACGGCCGCAT
TATCCTCGACTTTACTAAGAAATTCATTCTCCATGTCAAATTTTCTAACTTAGTAATTGAATGCG
GATTAACGCCTCCTTTAATATGCAATGTCATGCAAAAAAGATAATCAAAACGAAACACCGGTTAG
TATCAAATAATAGCGATAAAATGCAAGCATATAAACAATAATTATAGCGCATATACGGGTAAGTA
CTAAGGCTCGACACGGCTCCACCCAAGGATAGCTCCTAAGGTTCACTATATGTGGTTTAGTTCTA
GAGATAAGGTACCCGAACCAGCAGATTCCTCAATCCTCACCCATTATAGGGCTCATATAGATCGA
GTTCGATTCGGGGGATACATTTCCCTATGACCATGCGGAGATTAAAATCTCACGAAATCATAAGT
ACGGATGTACCCCGGAAGCAATCCACTAGCCCATGCGGAGGTGAAAACCTCACGAAAGCGTAGCT
TCTTACTCCCACTT
Found at i:9278481 original size:131 final size:130
Alignment explanation
Indices: 9278361--9278659 Score: 287
Period size: 131 Copynumber: 2.3 Consensus size: 130
9278351 TCGAATTTTC
* * * * * *
9278361 AAATGCCGAATATAG-CTTTCGTTTTAAATAATTTTTAGAAGATATGAATGAAATTTTGAAGGGA
1 AAATACCGAATATAGTC-TTCGTTTTAAAGAA-TTTTAAAAGACACGAATGAAATTTCGAAGGGA
* *
9278425 TGCTCGATTACTTTGGA-CAAACGCAAAATTGCAACCCAATACGTTAGGGCACGATTCCGCGAAT
64 TACTCGATTA-TTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACGATT-CGCGAAT
9278489 TGCT
127 TGCT
* * * * * * * *
9278493 AAGTATCGAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACGCGAGTGAAATTTCGAAGTGATA
1 AAATACCGAATATAGTCTTCGTTTTAAAGAATTTTAAAAGACACGAATGAAATTTCGAAGGGATA
* * * * *
9278558 TTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCACTAATTGC
66 CTCGATTATTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACGATT-CGCGAATTGC
*
9278623 C
130 T
* * * * *
9278624 AAACATCGAATCTCGTCTTCGTTTTGAAGAACTTTT
1 AAATACCGAATATAGTCTTCGTTTTAAAGAA-TTTT
9278660 GAATGAATGA
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 5 0.04
131 108 0.77
132 26 0.19
133 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (130 bp):
AAATACCGAATATAGTCTTCGTTTTAAAGAATTTTAAAAGACACGAATGAAATTTCGAAGGGATA
CTCGATTATTTGGAGCAAACGCAAAATTGCAACCCAACACGTTAGGGCACGATTCGCGAATTGCT
Found at i:9279245 original size:15 final size:16
Alignment explanation
Indices: 9279211--9279254 Score: 54
Period size: 15 Copynumber: 2.7 Consensus size: 16
9279201 GAAAGTTAAC
9279211 AAAATATATGATAGTACA
1 AAAATATATG--AGTACA
9279229 AAAATATATGA-TACA
1 AAAATATATGAGTACA
*
9279244 AAAATACATGA
1 AAAATATATGA
9279255 CAAAAAGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 14 0.56
16 1 0.04
18 10 0.40
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.25
Consensus pattern (16 bp):
AAAATATATGAGTACA
Found at i:9284264 original size:131 final size:131
Alignment explanation
Indices: 9284013--9284342 Score: 319
Period size: 131 Copynumber: 2.5 Consensus size: 131
9284003 TAATTATTCA
* * ** ** ** *
9284013 TTTAAAAACTCTTTAAACCGAAGGCGATGTTCGATATTTGGTAATTCGCGA-AATCATGCCCTGT
1 TTTAAAAACTCTTCAAAACGAAGGAAATACTCGATATTTGACAATTCG-GAGAATCATGCCCTAT
* *** * * *
9284077 CGTGCTT-GGTTACAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCAT
65 CGTG-TTCAGTTGTGATTTTTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCAT
*
9284141 G-T
129 GAC
** * ** * * *
9284143 TTTCCAAAAACTCTTTGAAATGAAGGAAATGTTCGATGTTTGGCAATTC-GAGAATCGTGCCCTA
1 TTT--AAAAACTCTTCAAAACGAAGGAAATACTCGATATTTGACAATTCGGAGAATCATGCCCTA
* *
9284207 TCGTGTTCAGTTGTGATTTTTCATTTGTTCAAAACAATCGAA-GATTCCTTTAGAATTTCACTCA
64 TCGTGTTCAGTTGTGATTTTTCATTTGCTCAAAACAATCGAATG-TCCCTTTAGAATTTCACTCA
9284271 TGAC
128 TGAC
* *
9284275 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATATTTGACAATTCGGGGAATCATGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGAAATACTCGATATTTGACAATTCGGAGAATCATGCCCTATC
9284340 GTG
66 GTG
9284343 CTTGTAATAG
Statistics
Matches: 164, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
130 44 0.27
131 80 0.49
132 40 0.24
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (131 bp):
TTTAAAAACTCTTCAAAACGAAGGAAATACTCGATATTTGACAATTCGGAGAATCATGCCCTATC
GTGTTCAGTTGTGATTTTTCATTTGCTCAAAACAATCGAATGTCCCTTTAGAATTTCACTCATGA
C
Found at i:9285884 original size:17 final size:17
Alignment explanation
Indices: 9285862--9285901 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
9285852 GTTATATATA
*
9285862 TATATTTCAAATTATTT
1 TATATTTCAAATTATTG
* *
9285879 TATATTTTAAGTTATTG
1 TATATTTCAAATTATTG
9285896 TATATT
1 TATATT
9285902 ATATATTTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (17 bp):
TATATTTCAAATTATTG
Found at i:9286031 original size:27 final size:28
Alignment explanation
Indices: 9286001--9286057 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
9285991 ATCATATATT
* *
9286001 TTAAACTCCT-TATTAATTATTTTTAAA
1 TTAAACTCATATATTAATTATTTTAAAA
* *
9286028 TT-AACTTATATATTATTTATTTTAAAA
1 TTAAACTCATATATTAATTATTTTAAAA
9286055 TTA
1 TTA
9286058 TTCATATATG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (28 bp):
TTAAACTCATATATTAATTATTTTAAAA
Found at i:9286033 original size:26 final size:27
Alignment explanation
Indices: 9286011--9286066 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
9286001 TTAAACTCCT
* *
9286011 TATTAATTATTTTTAAATTAACTTATA
1 TATTAATTATTTTAAAATTAACTCATA
* *
9286038 TATTATTTATTTTAAAATT-ATTCATA
1 TATTAATTATTTTAAAATTAACTCATA
9286064 TAT
1 TAT
9286067 GTCATTCTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTAATTATTTTAAAATTAACTCATA
Found at i:9286147 original size:27 final size:26
Alignment explanation
Indices: 9286088--9286167 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
9286078 ATTTGCTTTG
** * *
9286088 TGTATTATAGATTTTAAAATGCTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
** *
9286114 TACATTATTTATTTTAAACTTGTTTTA
1 TGTATTATTCATTTTAAA-TTGTTTTA
9286141 TGTATTATTCATTTTAAATTGTTTTA
1 TGTATTATTCATTTTAAATTGTTTTA
9286167 T
1 T
9286168 TGTTTACTTT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 23 0.52
27 21 0.48
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (26 bp):
TGTATTATTCATTTTAAATTGTTTTA
Found at i:9295544 original size:40 final size:40
Alignment explanation
Indices: 9295489--9295566 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
9295479 AAACATTAAG
9295489 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
1 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
* *
9295529 TAAAAAATACAACAATTAATATTTATATTCGGATTATA
1 TAAAAAATAAAACAATTAATATTTAGATTCGGATTATA
9295567 GAAATACAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (40 bp):
TAAAAAATAAAACAATTAATATTTAGATTCGGATTATAAA
Found at i:9295725 original size:19 final size:20
Alignment explanation
Indices: 9295686--9295726 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9295676 ATCAATACAA
*
9295686 TTCAATTTTACATTGAATAT
1 TTCAATTTTACATTCAATAT
*
9295706 TTCAATTTT-TATTCAATAT
1 TTCAATTTTACATTCAATAT
9295725 TT
1 TT
9295727 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTTACATTCAATAT
Found at i:9296298 original size:19 final size:20
Alignment explanation
Indices: 9296261--9296299 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
9296251 AATACTTATT
*
9296261 TATTATTTTATACATATGTA
1 TATTATTTTATACACATGTA
9296281 TATTATTTT-TACACATGTA
1 TATTATTTTATACACATGTA
9296300 CACTCAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.54
Consensus pattern (20 bp):
TATTATTTTATACACATGTA
Found at i:9297241 original size:38 final size:38
Alignment explanation
Indices: 9297196--9297272 Score: 100
Period size: 38 Copynumber: 2.0 Consensus size: 38
9297186 GAATTTGTGA
* * *
9297196 ATAGTCCCGCATACTATCATAGCATAAAGACTTGGTGG
1 ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
* * *
9297234 ATAGTCCCACGGATTGTCATAGCACAAAGACTTGGTGG
1 ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
9297272 A
1 A
9297273 CTTATACATA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (38 bp):
ATAGTCCCACAGACTATCATAGCACAAAGACTTGGTGG
Found at i:9297297 original size:29 final size:29
Alignment explanation
Indices: 9297264--9297375 Score: 143
Period size: 29 Copynumber: 3.9 Consensus size: 29
9297254 AGCACAAAGA
* * **
9297264 CTTGGTGGACTTATACATATGGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
*
9297293 CTTGGTGAACTCATACATGCGGACTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
* *
9297322 CTTGATGAACTCATACATGCAGATTCATG
1 CTTGGTGAACTCATACATGCGGATTCATG
* *
9297351 CTTGGTAAACTCATACATGTGGATT
1 CTTGGTGAACTCATACATGCGGATT
9297376 TATACTCACA
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (29 bp):
CTTGGTGAACTCATACATGCGGATTCATG
Found at i:9299431 original size:20 final size:20
Alignment explanation
Indices: 9299406--9299448 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
9299396 AGGAGTTAGA
9299406 TTACATTTTAACTTTTTTAC
1 TTACATTTTAACTTTTTTAC
9299426 TTACATTTTAACTTTTTTAC
1 TTACATTTTAACTTTTTTAC
9299446 TTA
1 TTA
9299449 AAAAATAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (20 bp):
TTACATTTTAACTTTTTTAC
Found at i:9299779 original size:21 final size:21
Alignment explanation
Indices: 9299745--9299804 Score: 54
Period size: 20 Copynumber: 2.9 Consensus size: 21
9299735 TAAATAATTA
*
9299745 TAAAAAATAT-AGAAACTTAT
1 TAAAAATTATAAGAAACTTAT
*
9299765 TAAAAATTATAAG-AATTTAT
1 TAAAAATTATAAGAAACTTAT
*
9299785 TTAAAATCTATTAA-AAACTT
1 TAAAAAT-TA-TAAGAAACTT
9299805 GGACAAACAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 21 0.66
21 4 0.12
22 7 0.22
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (21 bp):
TAAAAATTATAAGAAACTTAT
Found at i:9308787 original size:21 final size:21
Alignment explanation
Indices: 9308761--9308801 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9308751 AGATGAGCAA
* *
9308761 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
9308782 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
9308802 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:9314242 original size:19 final size:19
Alignment explanation
Indices: 9314220--9314256 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
9314210 CCACTATCAC
9314220 CCACCGTAATCAAATTTGA
1 CCACCGTAATCAAATTTGA
*
9314239 CCACTGTAATCAAATTTG
1 CCACCGTAATCAAATTTG
9314257 TTATTAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (19 bp):
CCACCGTAATCAAATTTGA
Found at i:9317688 original size:54 final size:56
Alignment explanation
Indices: 9317601--9317711 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 56
9317591 AATTAGGAAT
*
9317601 TAATAAAATAAAATAATTGATTAATTAGG-TAATAATAATTGGATTAATAAAAATC
1 TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
*
9317656 TAATAAAAT-AATTAATTAATTAATTAGGTAATAATAATAATTGGATTAATAAAAAT
1 TAATAAAATAAAATAATTAATTAATTAGG--ATAATAATAATTGGATTAATAAAAAT
9317712 ATATTAGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
54 17 0.33
55 9 0.18
57 25 0.49
ACGTcount: A:0.55, C:0.01, G:0.08, T:0.36
Consensus pattern (56 bp):
TAATAAAATAAAATAATTAATTAATTAGGATAATAATAATTGGATTAATAAAAATC
Found at i:9318976 original size:19 final size:19
Alignment explanation
Indices: 9318952--9319004 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
9318942 ACTTGTATGC
*
9318952 ATGTGCGAACCCATAAGCT
1 ATGTGCAAACCCATAAGCT
9318971 ATGTGCAAACCCATAAGCT
1 ATGTGCAAACCCATAAGCT
9318990 ATGTGCAAACCCATA
1 ATGTGCAAACCCATA
9319005 TGAATGTGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (19 bp):
ATGTGCAAACCCATAAGCT
Found at i:9321682 original size:84 final size:84
Alignment explanation
Indices: 9321541--9321709 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
9321531 ATGATAAGAG
* * *
9321541 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGGTGTTGGAACACTATTAAAATAAGTTGAA
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
9321606 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
*
9321625 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAT
1 AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
9321690 AATATAAAAGAAGATAAGT
66 AATATAAAAGAAGATAAGT
9321709 A
1 A
9321710 GATTTATTCC
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (84 bp):
AATGATTAAGTCTTATAATTGCATGAGATGTTGAGGATGTTAGAACACCATTAAAATAAGTTGAA
AATATAAAAGAAGATAAGT
Found at i:9322695 original size:164 final size:164
Alignment explanation
Indices: 9322395--9322725 Score: 448
Period size: 164 Copynumber: 2.0 Consensus size: 164
9322385 TTTATTATTC
*
9322395 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACT
1 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
* * * *
9322460 GAAGTGCAAATATAGAATAAGATGGCACTGAAGTGCATATTCAGAATAGGATAACATTAAAATGC
66 GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
* * **
9322525 GTATTCAGAACAGGGAGTGCGCT-AAATTTTCCTT
131 GTATTCAAAACAGAGAGCACGCTAAAATTTT-CTT
** ** *
9322559 AATAGAGGCCCAAGGTAGACTTAACAAAATGTATAAGGTATACGAAAATAGTACAATAATGCACC
1 AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
* ** * * * * *
9322624 GAAGTGCAAATACAGAACAGGATGGCACCGAAGTGTGTATTCAGAATAGGGCAGCATTGATATGT
66 GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
9322689 GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
131 GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
9322723 AAT
1 AAT
9322726 GGCATGCCAT
Statistics
Matches: 144, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
164 137 0.95
165 7 0.05
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (164 bp):
AATAGAGGCCCAACATAGACTTAACAAAACATATAAGGTATACGAAAATAGTACAACAATGCACC
GAAGTGCAAATACAGAACAAGATGGCACCGAAGTGCATATTCAGAATAGGACAACATTAAAATGC
GTATTCAAAACAGAGAGCACGCTAAAATTTTCTT
Found at i:9322915 original size:26 final size:26
Alignment explanation
Indices: 9322886--9322935 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
9322876 CCAACTTTCT
* * *
9322886 TTAATACATATAACATATTTCACTAC
1 TTAATAAAAATAACATAATTCACTAC
*
9322912 TTAATAAAAATTACATAATTCACT
1 TTAATAAAAATAACATAATTCACT
9322936 CTACAACTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (26 bp):
TTAATAAAAATAACATAATTCACTAC
Done.