Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 320 of 320
Found at i:102706974 original size:12 final size:12
Alignment explanation
Indices: 102706957--102706987 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
102706947 GTGGGATGAC
102706957 AAGGAAGAAGGA
1 AAGGAAGAAGGA
102706969 AAGGAAGAAGGA
1 AAGGAAGAAGGA
102706981 AAGGAAG
1 AAGGAAG
102706988 TAACACAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (12 bp):
AAGGAAGAAGGA
Found at i:102708599 original size:11 final size:11
Alignment explanation
Indices: 102708565--102708616 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
102708555 GTAAGGGTTA
*
102708565 ATTTCATTTTT
1 ATTTAATTTTT
*
102708576 -TTTAA-TATT
1 ATTTAATTTTT
102708585 ATTTAATTTTT
1 ATTTAATTTTT
102708596 ATTTAATTTTAT
1 ATTTAATTTT-T
102708608 AATTTAATT
1 -ATTTAATT
102708617 AATATTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 3 0.09
10 9 0.26
11 13 0.38
12 1 0.03
13 8 0.24
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTT
Found at i:102708600 original size:21 final size:20
Alignment explanation
Indices: 102708565--102708607 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
102708555 GTAAGGGTTA
*
102708565 ATTTCATTTTTTTTAATATT
1 ATTTAATTTTTTTTAATATT
*
102708585 ATTTAATTTTTATTTAATTTT
1 ATTTAATTTTT-TTTAATATT
102708606 AT
1 AT
102708608 AATTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (20 bp):
ATTTAATTTTTTTTAATATT
Found at i:102708637 original size:31 final size:31
Alignment explanation
Indices: 102708565--102708642 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 31
102708555 GTAAGGGTTA
* * *
102708565 ATTTCATTTTTTTTAATATTATTTAATTTTT
1 ATTTAATTTTTTATAATATTAATTAATTTTT
102708596 ATTTAA--TTTTATAAT-TTAATTAATATTTT
1 ATTTAATTTTTTATAATATTAATTAAT-TTTT
102708625 -TTATAATTTTTTATAATA
1 ATT-TAATTTTTTATAATA
102708643 GCTGACAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
28 10 0.26
29 15 0.38
31 14 0.36
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.65
Consensus pattern (31 bp):
ATTTAATTTTTTATAATATTAATTAATTTTT
Found at i:102708994 original size:89 final size:89
Alignment explanation
Indices: 102708842--102709014 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 89
102708832 AAACTTAGAC
* * **
102708842 CCTAATTAACAAATAACCCATTGGGGATTACACGGCCAAAAACACTTCCATGTCAGAGCGCTTTT
1 CCTAATTAACAAATAACCCACTGAGGATTACACGGCCAAAAACACTTCCACATCAGAGCGCTTTT
*
102708907 GCGTAACACAAGGAAAAAAAATGT
66 GCCTAACACAAGGAAAAAAAATGT
* *** * *
102708931 CCTAATTAGCAAATAACCCACTGAGGATTACACGGCCAAAAGTGCTTCCACATTAGAGTGCTTTT
1 CCTAATTAACAAATAACCCACTGAGGATTACACGGCCAAAAACACTTCCACATCAGAGCGCTTTT
**
102708996 GCCTGGCACAAGGAAAAAA
66 GCCTAACACAAGGAAAAAA
102709015 GCGCTGATGT
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (89 bp):
CCTAATTAACAAATAACCCACTGAGGATTACACGGCCAAAAACACTTCCACATCAGAGCGCTTTT
GCCTAACACAAGGAAAAAAAATGT
Found at i:102714759 original size:21 final size:21
Alignment explanation
Indices: 102714733--102714773 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
102714723 ATCTGCTCAA
* *
102714733 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
102714754 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
102714774 TTGCTCGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:102720790 original size:14 final size:14
Alignment explanation
Indices: 102720771--102720798 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
102720761 TGCCAAGATC
102720771 TTAAGCAAAAAAGT
1 TTAAGCAAAAAAGT
102720785 TTAAGCAAAAAAGT
1 TTAAGCAAAAAAGT
102720799 CACCTTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
TTAAGCAAAAAAGT
Found at i:102721502 original size:6 final size:6
Alignment explanation
Indices: 102721491--102721539 Score: 89
Period size: 6 Copynumber: 8.2 Consensus size: 6
102721481 CCACCATGAT
*
102721491 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CACCAC
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC CATCAC
102721539 C
1 C
102721540 GTCATCTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.33, C:0.53, G:0.00, T:0.14
Consensus pattern (6 bp):
CATCAC
Found at i:102738019 original size:39 final size:41
Alignment explanation
Indices: 102737944--102738037 Score: 111
Period size: 40 Copynumber: 2.3 Consensus size: 41
102737934 AATTTCAGGC
* * *
102737944 ATGGACTCTTAATGGTTCTATTTTTGCACATAGGTTAGGCAT
1 ATGGACTCGT-ATGGTTCCATTTTGGCACATAGGTTAGGCAT
* *
102737986 ATGG-CTCGTATGGTTCCATTTTGGGA-ATAGGTTAGGCTT
1 ATGGACTCGTATGGTTCCATTTTGGCACATAGGTTAGGCAT
*
102738025 ATGGACTTGTATG
1 ATGGACTCGTATG
102738038 TTTTTCACAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 16 0.36
40 21 0.47
41 4 0.09
42 4 0.09
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.39
Consensus pattern (41 bp):
ATGGACTCGTATGGTTCCATTTTGGCACATAGGTTAGGCAT
Found at i:102750089 original size:11 final size:11
Alignment explanation
Indices: 102750075--102750119 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
102750065 AGATAAATAT
102750075 TATTTTATTAA
1 TATTTTATTAA
*
102750086 TATTTTAATAATA
1 TATTTT-ATTA-A
*
102750099 TATTTTATTAT
1 TATTTTATTAA
102750110 TATTTTATTA
1 TATTTTATTA
102750120 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:102750102 original size:24 final size:24
Alignment explanation
Indices: 102750070--102750125 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
102750060 TAATTAGATA
102750070 AATATTATTTTATTAATATTTTAAT
1 AATA-TATTTTATTAATATTTTAAT
* *
102750095 AATATATTTTATTATTATTTTATT
1 AATATATTTTATTAATATTTTAAT
*
102750119 AGTATAT
1 AATATAT
102750126 AAAGAAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AATATATTTTATTAATATTTTAAT
Found at i:102752303 original size:46 final size:46
Alignment explanation
Indices: 102752251--102752432 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
102752241 AGTGTACTCT
* *
102752251 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
102752297 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
102752343 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
102752389 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
102752433 TCATGTTAAA
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 123 0.99
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:102753762 original size:35 final size:35
Alignment explanation
Indices: 102753723--102753913 Score: 107
Period size: 35 Copynumber: 5.2 Consensus size: 35
102753713 GGATAAACTA
*
102753723 ACGATATTTGCACCCAGTGCTAGTCAAATATACTG
1 ACGATATTTGCACCCAGTGCTAGTCAAATATACCG
* *** * *
102753758 ACGATAATAATTGTGAACCCAGCT-CTAGTTGGATAAACCA
1 ACG---AT-ATT-TGCACCCAG-TGCTAGTCAAATATACCG
*
102753798 ATGATATTTGCACCCAGTGCTAGTCAAATATACCG
1 ACGATATTTGCACCCAGTGCTAGTCAAATATACCG
* * *** * *
102753833 ACGATAATAATTGTGAGCCAAGCT-CTAGTTGGATAAACCA
1 ACGAT-AT--TTG-CA-CCCAG-TGCTAGTCAAATATACCG
*
102753873 ACGATATTTGCACCCAGTGCTAGTCAGATATACCG
1 ACGATATTTGCACCCAGTGCTAGTCAAATATACCG
*
102753908 ATGATA
1 ACGATA
102753914 ATAATTGTGA
Statistics
Matches: 113, Mismatches: 29, Indels: 28
0.66 0.17 0.16
Matches are distributed among these distances:
34 2 0.02
35 47 0.42
36 6 0.05
37 5 0.04
38 5 0.04
39 6 0.05
40 40 0.35
41 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (35 bp):
ACGATATTTGCACCCAGTGCTAGTCAAATATACCG
Found at i:102753790 original size:75 final size:75
Alignment explanation
Indices: 102753679--102753972 Score: 455
Period size: 75 Copynumber: 3.9 Consensus size: 75
102753669 AGTCGGACTA
* * *
102753679 ACCGACGATATTGAA-TGTGAGCCCAGCTCTAATTGGATAAACTAACGATATTTGCACCCAGTGC
1 ACCGACGATAAT-AATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGC
102753743 TAGTCAAATAT
65 TAGTCAAATAT
* * *
102753754 ACTGACGATAATAATTGTGAACCCAGCTCTAGTTGGATAAACCAATGATATTTGCACCCAGTGCT
1 ACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGCT
102753819 AGTCAAATAT
66 AGTCAAATAT
*
102753829 ACCGACGATAATAATTGTGAGCCAAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGCT
1 ACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGCT
*
102753894 AGTCAGATAT
66 AGTCAAATAT
* * * * *
102753904 ACCGATGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACCATAATTGCGCCCAGCGCT
1 ACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGCT
102753969 AGTC
66 AGTC
102753973 GGATTAACCG
Statistics
Matches: 201, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
74 2 0.01
75 199 0.99
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (75 bp):
ACCGACGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCCAGTGCT
AGTCAAATAT
Found at i:102753877 original size:40 final size:39
Alignment explanation
Indices: 102753758--102753955 Score: 146
Period size: 40 Copynumber: 5.2 Consensus size: 39
102753748 AAATATACTG
102753758 ACGATAATAATTGTGAACCCAGCTCTAGTTGGATAAACCA
1 ACGATAATAATTGTG-ACCCAGCTCTAGTTGGATAAACCA
* * *** * *
102753798 ATGAT-AT--TTG-CACCCAG-TGCTAGTCAAATATACCG
1 ACGATAATAATTGTGACCCAGCT-CTAGTTGGATAAACCA
*
102753833 ACGATAATAATTGTGAGCCAAGCTCTAGTTGGATAAACCA
1 ACGATAATAATTGTGA-CCCAGCTCTAGTTGGATAAACCA
* ** * *
102753873 ACGAT-AT--TTG-CACCCAG-TGCTAGTCAGATATACCG
1 ACGATAATAATTGTGACCCAGCT-CTAGTTGGATAAACCA
*
102753908 ATGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCA
1 ACGATAATAATTGTGA-CCCAGCTCTAGTTGGATAAACCA
*
102753948 ACCATAAT
1 ACGATAAT
102753956 TGCGCCCAGC
Statistics
Matches: 115, Mismatches: 29, Indels: 28
0.67 0.17 0.16
Matches are distributed among these distances:
34 2 0.02
35 41 0.36
36 5 0.04
37 6 0.05
38 6 0.05
39 6 0.05
40 47 0.41
41 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (39 bp):
ACGATAATAATTGTGACCCAGCTCTAGTTGGATAAACCA
Found at i:102753965 original size:35 final size:35
Alignment explanation
Indices: 102753853--102753987 Score: 92
Period size: 35 Copynumber: 3.7 Consensus size: 35
102753843 TTGTGAGCCA
* * * *
102753853 AGCTCTAGTTGGATAAACCAACGATATTTGCACCC
1 AGCTCTAGTCGGATAAACCAACAATAATTGCGCCC
* * * *
102753888 AG-TGCTAGTCAGATATACCGATGATAATAATTGTGAGCCC
1 AGCT-CTAGTCGGATAAACC-A--ACAATAA-T-TGCGCCC
* *
102753928 AGCTCTAGTTGGATAAACCAACCATAATTGCGCCC
1 AGCTCTAGTCGGATAAACCAACAATAATTGCGCCC
* * *
102753963 AGCGCTAGTCGGATTAACCGACAAT
1 AGCTCTAGTCGGATAAACCAACAAT
102753988 TGTGTCCCCT
Statistics
Matches: 74, Mismatches: 19, Indels: 14
0.69 0.18 0.13
Matches are distributed among these distances:
34 1 0.01
35 40 0.54
36 2 0.03
37 5 0.07
38 4 0.05
39 2 0.03
40 19 0.26
41 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (35 bp):
AGCTCTAGTCGGATAAACCAACAATAATTGCGCCC
Found at i:102780042 original size:97 final size:95
Alignment explanation
Indices: 102779820--102780043 Score: 218
Period size: 97 Copynumber: 2.3 Consensus size: 95
102779810 AACCTCAAAT
* * * *
102779820 ATATAAAAACAAA-TTGAGCTAACAATCATGTTATCTGTCGGTAGATTGCTTGAATCATAGTTTA
1 ATATCAAAACAAAGTTGAGCCAACAATCATGTCATCTGTCGGTAGATTGCTTGAATCATAGTCTA
**
102779884 ACAGCCAAGCATGAAACCCAAAAATCTCAA
66 ACAGCCAAGCACCAAACCCAAAAATCTCAA
* ** *** * *
102779914 ATATCAAAAACCAAGTCAAGCCAATGGTCATGTCGTCTGTTGGTAGATTGCTT-AACTCATAGCT
1 ATATC-AAAACAAAGTTGAGCCAACAATCATGTCATCTGTCGGTAGATTGCTTGAA-TCATAG-T
* ** * * *
102779978 CTGATGGCCAAGGACCAAACCCTCACAATCTCAA
63 CTAACAGCCAAGCACCAAACCC-AAAAATCTCAA
102780012 ATATCAAAACAAAGTTGAGCCAACAATCATGT
1 ATATCAAAACAAAGTTGAGCCAACAATCATGT
102780044 AATTTGCTAG
Statistics
Matches: 99, Mismatches: 26, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
94 4 0.04
95 9 0.09
96 35 0.35
97 37 0.37
98 14 0.14
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.25
Consensus pattern (95 bp):
ATATCAAAACAAAGTTGAGCCAACAATCATGTCATCTGTCGGTAGATTGCTTGAATCATAGTCTA
ACAGCCAAGCACCAAACCCAAAAATCTCAA
Found at i:102781582 original size:12 final size:12
Alignment explanation
Indices: 102781561--102781597 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
102781551 CTTATTTTTA
*
102781561 AATAAAAAATTT
1 AATATAAAATTT
*
102781573 AATATGAAATTT
1 AATATAAAATTT
102781585 AATATAAAATTT
1 AATATAAAATTT
102781597 A
1 A
102781598 TCCATACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (12 bp):
AATATAAAATTT
Found at i:102788307 original size:44 final size:44
Alignment explanation
Indices: 102788259--102788345 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
102788249 AAGTAGTATC
* *
102788259 TAAATATTAAATTA-GTAAAAATAAAGTTTAATAATTACAATATT
1 TAAATATT-AATTAGGTAAAAATAAACTTAAATAATTACAATATT
*
102788303 TAAATATTAATTAGGTAAAAATAAACTTAAATAATTATAATAT
1 TAAATATTAATTAGGTAAAAATAAACTTAAATAATTACAATAT
102788346 CTAATACAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 5 0.13
44 34 0.87
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (44 bp):
TAAATATTAATTAGGTAAAAATAAACTTAAATAATTACAATATT
Found at i:102792624 original size:24 final size:24
Alignment explanation
Indices: 102792597--102792669 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
102792587 CATTTTCTGT
102792597 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
* * *
102792621 CATG--GTC-TTGT-TCATTTCAAT
1 CATGTTGCCATGGTATC-TTTCAAC
*
102792642 CACGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATGGTATCTTTCAAC
102792666 CATG
1 CATG
102792670 GTCTTACACA
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 2 0.06
21 12 0.33
22 2 0.06
23 2 0.06
24 16 0.44
25 2 0.06
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (24 bp):
CATGTTGCCATGGTATCTTTCAAC
Found at i:102792780 original size:85 final size:86
Alignment explanation
Indices: 102792600--102792832 Score: 292
Period size: 86 Copynumber: 2.7 Consensus size: 86
102792590 TTTCTGTCAT
*** * * *
102792600 GTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCA-ATCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGG-----TTGA
* *
102792664 ACCA-TGGTCTTACACATTTCATATCAG
61 A--AGTTGTCTTACACATTTCATATCAA
* *
102792691 GTTGCCATGGTAT-TTTCAACCATGGTCTTACACATTTCATATCATGCTGCCGTGGTTGAAAGTT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTTGAAAGTT
102792755 GTCTTACACATTTCATATCAA
66 GTCTTACACATTTCATATCAA
102792776 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGT
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGT
102792833 ATCTTTCAAC
Statistics
Matches: 128, Mismatches: 11, Indels: 11
0.85 0.07 0.07
Matches are distributed among these distances:
84 1 0.01
85 34 0.27
86 45 0.35
90 23 0.18
91 25 0.20
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (86 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATGGTTGAAAGTT
GTCTTACACATTTCATATCAA
Found at i:102792867 original size:46 final size:46
Alignment explanation
Indices: 102792556--102792867 Score: 374
Period size: 46 Copynumber: 7.0 Consensus size: 46
102792546 TTTGACATGA
* * * * * *
102792556 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
102792602 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCA-ATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
102792647 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
102792693 TGCCATGGTAT-TTTCAACCATGGTCTTACACATTTCATATCATGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* * * *
102792738 TGCCGTGG-----TTGAA--AGTTGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCA-TGGTCTTACACATTTCATATCAGGT
*
102792778 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
102792824 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
102792868 AGAGCACACT
Statistics
Matches: 232, Mismatches: 24, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.00
40 29 0.12
41 4 0.02
45 87 0.38
46 110 0.47
47 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:102806327 original size:12 final size:12
Alignment explanation
Indices: 102806310--102806334 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
102806300 CCTGTTTGTT
102806310 GTAGATATTGAA
1 GTAGATATTGAA
102806322 GTAGATATTGAA
1 GTAGATATTGAA
102806334 G
1 G
102806335 AGGTACCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (12 bp):
GTAGATATTGAA
Found at i:102807794 original size:20 final size:20
Alignment explanation
Indices: 102807761--102807824 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
102807751 ATTTTATATT
*
102807761 TTTTTATAAA-TATTTTGAA
1 TTTTTAAAAATTATTTTGAA
* **
102807780 TTTTTGAAAATTATTTCAAA
1 TTTTTAAAAATTATTTTGAA
* *
102807800 TTTTTAAAAATCATGTTGAA
1 TTTTTAAAAATTATTTTGAA
102807820 TTTTT
1 TTTTT
102807825 TTTTTTTGAA
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
19 8 0.23
20 27 0.77
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (20 bp):
TTTTTAAAAATTATTTTGAA
Found at i:102808587 original size:12 final size:12
Alignment explanation
Indices: 102808570--102808599 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
102808560 TTACTGCCAA
102808570 TCTTGAAAATCT
1 TCTTGAAAATCT
*
102808582 TCTTGAAAGTCT
1 TCTTGAAAATCT
102808594 TCTTGA
1 TCTTGA
102808600 GTCTCCACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (12 bp):
TCTTGAAAATCT
Found at i:102810817 original size:52 final size:52
Alignment explanation
Indices: 102810738--102810902 Score: 216
Period size: 46 Copynumber: 3.2 Consensus size: 52
102810728 TACTTCTGAT
* *
102810738 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
1 CAAGTGA-AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
** *
102810791 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
102810843 C------AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
*
102810889 CAAAGTGATAAGTG
1 C-AAGTGAAAAGTG
102810903 GCTACACTTA
Statistics
Matches: 96, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
46 43 0.45
52 41 0.43
53 12 0.12
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.27
Consensus pattern (52 bp):
CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
Found at i:102810910 original size:37 final size:37
Alignment explanation
Indices: 102810866--102810974 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
102810856 GATAGCTTTA
102810866 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
102810903 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
102810940 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
102810975 ATCATACGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:102815096 original size:19 final size:21
Alignment explanation
Indices: 102815072--102815115 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
102815062 CTATTAAAAC
*
102815072 ATATATCTATTAA-ATA-TTA
1 ATATATCTAATAATATATTTA
*
102815091 ATATATTTAATAATATATTTA
1 ATATATCTAATAATATATTTA
102815112 ATAT
1 ATAT
102815116 TATTATCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 3 0.14
21 7 0.33
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATATCTAATAATATATTTA
Found at i:102815106 original size:12 final size:12
Alignment explanation
Indices: 102815089--102815114 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
102815079 TATTAAATAT
102815089 TAATATATTTAA
1 TAATATATTTAA
102815101 TAATATATTTAA
1 TAATATATTTAA
102815113 TA
1 TA
102815115 TTATTATCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATATATTTAA
Found at i:102819586 original size:26 final size:26
Alignment explanation
Indices: 102819556--102819608 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
102819546 CAACCATAAC
*
102819556 TAAAATGGAACTAATACAAAATACTA
1 TAAAATGAAACTAATACAAAATACTA
102819582 TAAAATGAAACTAATACAAAATACTA
1 TAAAATGAAACTAATACAAAATACTA
102819608 T
1 T
102819609 CGACTTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (26 bp):
TAAAATGAAACTAATACAAAATACTA
Found at i:102822337 original size:137 final size:140
Alignment explanation
Indices: 102822126--102822409 Score: 493
Period size: 137 Copynumber: 2.0 Consensus size: 140
102822116 GAAACAACAA
*
102822126 GTGTTTGGATGAAAAAGCAAACATATGTCTGAGGATTTAGAAATAAATGTTTAGGGTGTGTTTTG
1 GTGTTTGGATGAAAAAGCAAACATATGTCTGAGGATTTAGAAATAAATGTTTAGGGTGTGTTTAG
* ** **
102822191 ATAGTAATTGCAAGAAAGGTTCATTATTAGGGTAATAATTACAATG-CCTT-GTA-GTATTCTAA
66 ATAGTAATTGCAAGAAAGGTTAATTATTAGGGTAATAATTACAATGTAATTACAAGGTATTCTAA
102822253 TTTCATATAT
131 TTTCATATAT
102822263 GTGTTTGGATGAAAAAGCAAACATATGTCTGAGGATTTAGAAATAAATGTTTAGGGTGTGTTTAG
1 GTGTTTGGATGAAAAAGCAAACATATGTCTGAGGATTTAGAAATAAATGTTTAGGGTGTGTTTAG
102822328 ATAGTAATTGCAAGAAAGGTTAATTATTAGGGTAATAATTACAATGTAATTACAAGGTATTCTAA
66 ATAGTAATTGCAAGAAAGGTTAATTATTAGGGTAATAATTACAATGTAATTACAAGGTATTCTAA
102822393 TTTCATATAT
131 TTTCATATAT
102822403 GTGTTTG
1 GTGTTTG
102822410 CCTTACATAA
Statistics
Matches: 138, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
137 109 0.79
138 2 0.01
139 1 0.01
140 26 0.19
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.37
Consensus pattern (140 bp):
GTGTTTGGATGAAAAAGCAAACATATGTCTGAGGATTTAGAAATAAATGTTTAGGGTGTGTTTAG
ATAGTAATTGCAAGAAAGGTTAATTATTAGGGTAATAATTACAATGTAATTACAAGGTATTCTAA
TTTCATATAT
Found at i:102826600 original size:18 final size:18
Alignment explanation
Indices: 102826577--102826615 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
102826567 ACTAGTTATA
*
102826577 TAATTTAGTTTTTTTTTG
1 TAATTTAGTTTTTCTTTG
*
102826595 TAATTTTGTTTTTCTTTG
1 TAATTTAGTTTTTCTTTG
102826613 TAA
1 TAA
102826616 CCTTTTCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.03, G:0.10, T:0.69
Consensus pattern (18 bp):
TAATTTAGTTTTTCTTTG
Found at i:102833254 original size:24 final size:24
Alignment explanation
Indices: 102833222--102833271 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
102833212 TCAAGCAATA
102833222 TATACATGTATAGCAAAATATGCT
1 TATACATGTATAGCAAAATATGCT
102833246 TATACATGTATAGCAAAATATGCT
1 TATACATGTATAGCAAAATATGCT
102833270 TA
1 TA
102833272 CATTTTTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (24 bp):
TATACATGTATAGCAAAATATGCT
Found at i:102837591 original size:17 final size:18
Alignment explanation
Indices: 102837558--102837592 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
102837548 TCCCCAAAGG
102837558 ATTCTCGATCATATTCTT
1 ATTCTCGATCATATTCTT
*
102837576 ATTCTC-ATCATCTTCTT
1 ATTCTCGATCATATTCTT
102837593 TCTTCCTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.20, C:0.26, G:0.03, T:0.51
Consensus pattern (18 bp):
ATTCTCGATCATATTCTT
Found at i:102838908 original size:12 final size:12
Alignment explanation
Indices: 102838887--102838916 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
102838877 TCAAATAATT
*
102838887 TAATTATTTAAA
1 TAATTTTTTAAA
102838899 TAATTTTTTAAA
1 TAATTTTTTAAA
102838911 TAATTT
1 TAATTT
102838917 AATAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TAATTTTTTAAA
Found at i:102840300 original size:12 final size:12
Alignment explanation
Indices: 102840280--102840315 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
102840270 TGATGATGAT
102840280 GAGGAAGAGGAG
1 GAGGAAGAGGAG
* *
102840292 GATGAAGAGGGG
1 GAGGAAGAGGAG
102840304 GAGGAAGAGGAG
1 GAGGAAGAGGAG
102840316 AAAGAGAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.58, T:0.03
Consensus pattern (12 bp):
GAGGAAGAGGAG
Found at i:102854935 original size:24 final size:24
Alignment explanation
Indices: 102854889--102854935 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
102854879 AAGAGAGGTA
* * *
102854889 AAATCAATAAGAAAACCATTTTGT
1 AAATAAATAAGAAAAACAGTTTGT
*
102854913 AAATAAATAAGAAAAAGAGTTTG
1 AAATAAATAAGAAAAACAGTTTG
102854936 AAGTATAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.55, C:0.06, G:0.13, T:0.26
Consensus pattern (24 bp):
AAATAAATAAGAAAAACAGTTTGT
Found at i:102855418 original size:110 final size:111
Alignment explanation
Indices: 102855225--102855448 Score: 378
Period size: 110 Copynumber: 2.0 Consensus size: 111
102855215 TCTCATATAC
* *
102855225 TTTAAATTAAAATATATGAAAAAGCTTGAAGGAGCTAATATGGATTGACTCAATTAAAAGAACTC
1 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
*
102855290 TCTTCCTATTATATATTTATGATCACTAACA-CAAACTTAGATAAA
66 TCATCCTATTATATATTTATGATCACTAACATCAAACTTAGATAAA
* *
102855335 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGGCCCAATTAAATGAACTC
1 TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
* *
102855400 TCATCCTATTATGTATTTATGATCACTAACATTAAACTTAGATAAA
66 TCATCCTATTATATATTTATGATCACTAACATCAAACTTAGATAAA
102855446 TTT
1 TTT
102855449 GAGTTGCCTA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 90 0.85
111 16 0.15
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.34
Consensus pattern (111 bp):
TTTAAATTAAAATATATGAAAAAGCTTGAAGAAGCTAATATGGATTGACCCAATTAAAAGAACTC
TCATCCTATTATATATTTATGATCACTAACATCAAACTTAGATAAA
Found at i:102859863 original size:3 final size:3
Alignment explanation
Indices: 102859855--102859884 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
102859845 ACTAAATGTG
*
102859855 TAA TAA TAA TAA TAA TCA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
102859885 AACAAGAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:102871837 original size:23 final size:24
Alignment explanation
Indices: 102871811--102871857 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
102871801 TATTTTGTGT
102871811 TTATATATTGC-ATATAAAAATAC
1 TTATATATTGCAATATAAAAATAC
* *
102871834 TTATATTTTTCTAATATAAAAATA
1 TTATATATTGC-AATATAAAAATA
102871858 AATTAATGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
25 11 0.55
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (24 bp):
TTATATATTGCAATATAAAAATAC
Found at i:102872310 original size:12 final size:12
Alignment explanation
Indices: 102872293--102872325 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
102872283 CGACCCGCCC
102872293 ATATTAATTTTT
1 ATATTAATTTTT
102872305 ATATT-ATTTTT
1 ATATTAATTTTT
102872316 ATA-TAATTTT
1 ATATTAATTTT
102872326 AAAAAATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:102872409 original size:30 final size:30
Alignment explanation
Indices: 102872373--102872433 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
102872363 CAATTTAACA
*
102872373 AGCAAATGTCTCTAAAATAATAACAAAATT
1 AGCAAATATCTCTAAAATAATAACAAAATT
* *
102872403 AGCAAATATCTTTAAAATAATAATAAAATT
1 AGCAAATATCTCTAAAATAATAACAAAATT
102872433 A
1 A
102872434 ACAATAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.30
Consensus pattern (30 bp):
AGCAAATATCTCTAAAATAATAACAAAATT
Found at i:102872480 original size:11 final size:11
Alignment explanation
Indices: 102872466--102872513 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
102872456 ATATCCAAAC
*
102872466 AATAATAACAA
1 AATAATAGCAA
*
102872477 AATAGTAGCAA
1 AATAATAGCAA
* *
102872488 TATAATAGTAA
1 AATAATAGCAA
*
102872499 AATATTAGCAA
1 AATAATAGCAA
102872510 AATA
1 AATA
102872514 GGGAGAAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.60, C:0.06, G:0.08, T:0.25
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:102872492 original size:22 final size:22
Alignment explanation
Indices: 102872467--102872509 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
102872457 TATCCAAACA
102872467 ATAATAACAAAATAGTAGCAAT
1 ATAATAACAAAATAGTAGCAAT
** *
102872489 ATAATAGTAAAATATTAGCAA
1 ATAATAACAAAATAGTAGCAA
102872510 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.09, T:0.26
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAT
Found at i:102890286 original size:31 final size:32
Alignment explanation
Indices: 102890226--102890296 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 32
102890216 TTTACTCTTT
*
102890226 AAATTAACATATATGAATTAATTTATTAATGAA
1 AAATAAACATATATGAATTAATTTATTAAT-AA
102890259 AAATAAACA-ATAT-AATTCAATTT-TTAATAA
1 AAATAAACATATATGAATT-AATTTATTAATAA
*
102890289 AAAAAAAC
1 AAATAAAC
102890297 TTCCGTGGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 9 0.26
31 9 0.26
32 9 0.26
33 8 0.23
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.34
Consensus pattern (32 bp):
AAATAAACATATATGAATTAATTTATTAATAA
Found at i:102891074 original size:25 final size:26
Alignment explanation
Indices: 102891045--102891103 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
102891035 TATTTCATAT
*
102891045 TTATATATAT-TACATATATAAAT-AA
1 TTATATATATCTA-ATATAAAAATAAA
*
102891070 TTATATTTATCTAATATAAAAATAAA
1 TTATATATATCTAATATAAAAATAAA
*
102891096 TTAAATAT
1 TTATATAT
102891104 TTAATTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (26 bp):
TTATATATATCTAATATAAAAATAAA
Found at i:102896157 original size:17 final size:18
Alignment explanation
Indices: 102896125--102896158 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
102896115 AGAAAATGAA
*
102896125 AAAGAAAATTAAAAAGTG
1 AAAGAAAATAAAAAAGTG
102896143 AAAGAAAA-AAAAAAGT
1 AAAGAAAATAAAAAAGT
102896159 CAAGAAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.12
Consensus pattern (18 bp):
AAAGAAAATAAAAAAGTG
Found at i:102903815 original size:2 final size:2
Alignment explanation
Indices: 102903808--102903885 Score: 59
Period size: 2 Copynumber: 39.5 Consensus size: 2
102903798 ATCGACTTTT
* * * * *
102903808 AG AG AG AG AG AG AG AG AG AG AG AG A- AG AA AA AA AA AG AG AC
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
102903849 AG AC AG AG AC AG AG AC AG AG AC AG AG AC AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
102903886 CGGCAAAAGG
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
1 1 0.02
2 60 0.98
ACGTcount: A:0.56, C:0.08, G:0.36, T:0.00
Consensus pattern (2 bp):
AG
Found at i:102917219 original size:23 final size:23
Alignment explanation
Indices: 102917160--102917220 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
102917150 TTGTTCAACT
**
102917160 CAGGAACATGGCCACAATAAAAA
1 CAGGAACATGGCCTTAATAAAAA
102917183 CAGGAACATGGCCTTAATAAAAA
1 CAGGAACATGGCCTTAATAAAAA
102917206 CAGGAACATGGCCTT
1 CAGGAACATGGCCTT
102917221 CATTTGTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.44, C:0.21, G:0.20, T:0.15
Consensus pattern (23 bp):
CAGGAACATGGCCTTAATAAAAA
Found at i:102918669 original size:47 final size:46
Alignment explanation
Indices: 102918616--102918826 Score: 149
Period size: 44 Copynumber: 4.7 Consensus size: 46
102918606 AATTATTTTA
102918616 AATTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG
1 AATTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG
* * * ** **
102918662 ATATTATATATCATT-AT-TAA-ATTATATTTAATATTGATTATTTTA--
1 A-ATTATATA-AATTCATATAAGA--AAATTTATTATCAAGAATTTTATG
102918707 AATTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG
1 AATTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG
* * * * **
102918753 AAATA-ATATATT-AT-TAA-ATTATAATTAATAAT-AATTATTTTA--
1 AATTATATAAATTCATATAAGA--A-AATTTATTATCAAGAATTTTATG
*
102918795 AATTATACAAATTCATATAAGAAAATTTATTA
1 AATTATATAAATTCATATAAGAAAATTTATTA
102918827 GTTATAATTA
Statistics
Matches: 124, Mismatches: 25, Indels: 35
0.67 0.14 0.19
Matches are distributed among these distances:
42 5 0.04
43 18 0.15
44 40 0.32
45 22 0.18
46 10 0.08
47 26 0.21
48 3 0.02
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (46 bp):
AATTATATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATG
Found at i:102918841 original size:91 final size:91
Alignment explanation
Indices: 102918581--102918826 Score: 426
Period size: 91 Copynumber: 2.7 Consensus size: 91
102918571 CATTGATCGT
102918581 TCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
1 TCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
*
102918646 TATCAAGAATTTTATGATATTATATA
66 TATCAAGAATTTTATGATAATATATA
*
102918672 TCATTATTAAATTATATTTAATATTGATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
1 TCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
102918737 TATCAAGAATTTTATGA-AATA-ATA
66 TATCAAGAATTTTATGATAATATATA
* * *
102918761 T-ATTATTAAATTATAATTAATAATAATTATTTTAAATTATACAAATTCATATAAGAAAATTTAT
1 TCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
102918825 TA
66 TA
102918827 GTTATAATTA
Statistics
Matches: 149, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
88 61 0.41
89 4 0.03
90 3 0.02
91 81 0.54
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (91 bp):
TCATTATTAAATTATATTTAATATTAATTATTTTAAATTATATAAATTCATATAAGAAAATTTAT
TATCAAGAATTTTATGATAATATATA
Found at i:102918999 original size:15 final size:15
Alignment explanation
Indices: 102918964--102919015 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
102918954 TTAAGAATTT
*
102918964 TATTAAATTAT-ATA
1 TATTTAATTATAATA
102918978 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
102918992 TATTTAATAATAAT-
1 TATTTAATTATAATA
102919006 TATGTTAATT
1 TAT-TTAATT
102919016 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:102919053 original size:120 final size:120
Alignment explanation
Indices: 102918842--102919611 Score: 1386
Period size: 120 Copynumber: 6.4 Consensus size: 120
102918832 AATTATTTTA
* *
102918842 AATTTTATTAAATCATATATTTTAATTAAAATATA-TT--TAATAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AATTTATATTT
* * *
102918903 TATAGTATCATATATTATGATTTCAGTAAATTCATATAAGAATATTGATTATTAAG
65 TACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
102918959 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
102919024 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
102919079 AATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
102919144 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
102919199 AATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
102919264 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
102919319 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
102919384 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
* *
102919439 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATATTTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
102919504 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAT
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
102919559 AATCTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
102919612 TAAATATGAT
Statistics
Matches: 634, Mismatches: 15, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
117 33 0.05
118 2 0.00
120 597 0.94
121 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
Found at i:102919824 original size:44 final size:45
Alignment explanation
Indices: 102919759--102919849 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
102919749 ACCTCTATTC
* * *
102919759 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
102919803 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
102919848 CA
1 CA
102919850 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:102919864 original size:17 final size:16
Alignment explanation
Indices: 102919830--102919898 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
102919820 GATTAGCTAT
102919830 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
102919846 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
102919863 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
*
102919879 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
102919895 TACA
1 TACA
102919899 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:102919872 original size:33 final size:32
Alignment explanation
Indices: 102919830--102919898 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
102919820 GATTAGCTAT
102919830 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
* *
102919863 TACACCTCTAATTCAATACACCTCTAATTCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
102919895 TACA
1 TACA
102919899 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 7 0.21
33 27 0.79
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.28
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:102922723 original size:17 final size:17
Alignment explanation
Indices: 102922701--102922736 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
102922691 CTATCCCACA
102922701 ACACCAGCCATCAAACT
1 ACACCAGCCATCAAACT
102922718 ACACCAGCCATCAAACT
1 ACACCAGCCATCAAACT
102922735 AC
1 AC
102922737 TTCAAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.06, T:0.11
Consensus pattern (17 bp):
ACACCAGCCATCAAACT
Found at i:102924798 original size:21 final size:19
Alignment explanation
Indices: 102924766--102924804 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
102924756 TTAATTTAAA
102924766 AAAAACATTATTATGATAAC
1 AAAAACATTATT-TGATAAC
*
102924786 AAAAATATATATTTGATAA
1 AAAAACAT-TATTTGATAA
102924805 TTTTAAACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAACATTATTTGATAAC
Found at i:102939987 original size:3 final size:3
Alignment explanation
Indices: 102939956--102940029 Score: 60
Period size: 3 Copynumber: 24.3 Consensus size: 3
102939946 ATACACGTAC
* * * *
102939956 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATG GTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * *
102940003 CTA ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
102940030 CAAGGATATT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
2 2 0.04
3 46 0.85
4 6 0.11
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:102940506 original size:11 final size:12
Alignment explanation
Indices: 102940490--102940525 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
102940480 GAAAAAAAAA
102940490 GAAGAGAG-AGG
1 GAAGAGAGAAGG
102940501 GAAGAGAGAAGG
1 GAAGAGAGAAGG
102940513 G-AGAGAGAAGG
1 GAAGAGAGAAGG
102940524 GA
1 GA
102940526 GGGGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:102944372 original size:33 final size:33
Alignment explanation
Indices: 102944335--102944403 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
102944325 CTTCAGCCGC
102944335 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* *
102944368 CGCATGCCCCTCAGCCTTGGCCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
102944401 CGC
1 CGC
102944404 GTCTGACACT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.16, C:0.54, G:0.17, T:0.13
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:102945559 original size:22 final size:22
Alignment explanation
Indices: 102945515--102945588 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
102945505 CCATTACTAT
* * *
102945515 TATTATTATTATTCTTTTGTTA
1 TATTACTATTATTCTTATATTA
*
102945537 TATTACTATTATTGTTATA-T-
1 TATTACTATTATTCTTATATTA
* *
102945557 TATCACTATTTTTCTTACTATTA
1 TATTACTATTATTCTTA-TATTA
102945580 TTATTACTA
1 -TATTACTA
102945589 CAACTATTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
20 14 0.35
21 3 0.08
22 16 0.40
24 7 0.17
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (22 bp):
TATTACTATTATTCTTATATTA
Found at i:102945566 original size:20 final size:21
Alignment explanation
Indices: 102945541--102945580 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
102945531 TTGTTATATT
*
102945541 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
102945561 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
102945581 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:102945600 original size:3 final size:3
Alignment explanation
Indices: 102945488--102945585 Score: 58
Period size: 3 Copynumber: 32.7 Consensus size: 3
102945478 TTTTTATTTA
* * *
102945488 TAT TAT TAT TAT TAT CTCCAT TAC TAT TAT TAT TAT TAT TCT T-T TGT
1 TAT TAT TAT TAT TAT -T--AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
102945535 TA- TAT TAC TAT TAT TGT TA- TAT TAT CAC TAT TTT TCT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
102945581 TAT TA
1 TAT TA
102945586 CTACAACTAT
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
2 6 0.08
3 62 0.86
4 1 0.01
5 1 0.01
6 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.02, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:102945897 original size:15 final size:15
Alignment explanation
Indices: 102945877--102945907 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
102945867 TATTATTTTC
102945877 TATTTATTACTATTA
1 TATTTATTACTATTA
102945892 TATTTATTACTATTA
1 TATTTATTACTATTA
102945907 T
1 T
102945908 TAATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:102949690 original size:36 final size:36
Alignment explanation
Indices: 102949650--102949720 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
102949640 TTTAGTATTC
*
102949650 ATTTTAT-AATTTATAAAA-TAATAATAATTTAATTTA
1 ATTTTATAAAATTATAAAAGT-ATAA-AATTTAATTTA
*
102949686 ATTTTTTAAAATTATAAAAGTATAAAATTTAATTT
1 ATTTTATAAAATTATAAAAGTATAAAATTTAATTT
102949721 CGATACCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 16 0.52
37 14 0.45
38 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
ATTTTATAAAATTATAAAAGTATAAAATTTAATTTA
Found at i:102958791 original size:3 final size:3
Alignment explanation
Indices: 102958783--102958818 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
102958773 GCTTGCTATA
* *
102958783 CTT CTT CTT CTT CTT CTT TTT CCT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
102958819 GGTGGTGGTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:102958932 original size:3 final size:3
Alignment explanation
Indices: 102958920--102958961 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
102958910 ATGACGATAA
*
102958920 GTG GTA GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
102958962 AGGGGGTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.64, T:0.33
Consensus pattern (3 bp):
GTG
Found at i:102959939 original size:40 final size:42
Alignment explanation
Indices: 102959881--102959962 Score: 132
Period size: 40 Copynumber: 2.0 Consensus size: 42
102959871 ATATAAATAT
102959881 ACACACACGTACATATATATATACGTAAATCGATTGAATAAC
1 ACACACACGTACATATATATATACGTAAATCGATTGAATAAC
* *
102959923 ACACATACGTA-A-ATATATATACGTAAATCTATTGAATAAC
1 ACACACACGTACATATATATATACGTAAATCGATTGAATAAC
102959963 GGGTATTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 27 0.71
41 1 0.03
42 10 0.26
ACGTcount: A:0.46, C:0.17, G:0.09, T:0.28
Consensus pattern (42 bp):
ACACACACGTACATATATATATACGTAAATCGATTGAATAAC
Found at i:102965206 original size:19 final size:19
Alignment explanation
Indices: 102965182--102965238 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
102965172 TTTTAAGAAA
102965182 TTAATAATTTCTAAAACAT
1 TTAATAATTTCTAAAACAT
*
102965201 TTAATAATTACTAAAAACAT
1 TTAATAATTTCT-AAAACAT
** *
102965221 GAAAGAATTT-TAAAACAT
1 TTAATAATTTCTAAAACAT
102965239 GAAAAGATGC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.22
19 12 0.38
20 13 0.41
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (19 bp):
TTAATAATTTCTAAAACAT
Found at i:102974300 original size:13 final size:11
Alignment explanation
Indices: 102974272--102974314 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
102974262 AGTTAAAAAT
102974272 TATTTTATTAA
1 TATTTTATTAA
102974283 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
102974296 TA-TTTATTAT
1 TATTTTATTAA
102974306 TATTTTATT
1 TATTTTATT
102974315 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:102974301 original size:23 final size:23
Alignment explanation
Indices: 102974275--102974318 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
102974265 TAAAAATTAT
102974275 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
102974298 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
102974319 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:102981039 original size:12 final size:12
Alignment explanation
Indices: 102981022--102981075 Score: 56
Period size: 12 Copynumber: 4.3 Consensus size: 12
102981012 GATAAATACA
102981022 AATGTAAGAAAG
1 AATGTAAGAAAG
102981034 AATGTAAGAAAG
1 AATGTAAGAAAG
*
102981046 AAAT-TACAGAAACA
1 -AATGTA-AGAAA-G
*
102981060 AATGTAAGAAAT
1 AATGTAAGAAAG
102981072 AATG
1 AATG
102981076 GCTATGCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
12 18 0.50
13 16 0.44
14 2 0.06
ACGTcount: A:0.59, C:0.04, G:0.19, T:0.19
Consensus pattern (12 bp):
AATGTAAGAAAG
Found at i:102981069 original size:13 final size:13
Alignment explanation
Indices: 102981019--102981070 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
102981009 AAAGATAAAT
102981019 ACAAATGTAAGAA
1 ACAAATGTAAGAA
*
102981032 A-GAATGTAAGAA
1 ACAAATGTAAGAA
*
102981044 AGAAAT-TACAGAA
1 ACAAATGTA-AGAA
102981057 ACAAATGTAAGAA
1 ACAAATGTAAGAA
102981070 A
1 A
102981071 TAATGGCTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 13 0.39
13 18 0.55
14 2 0.06
ACGTcount: A:0.62, C:0.06, G:0.17, T:0.15
Consensus pattern (13 bp):
ACAAATGTAAGAA
Found at i:102982465 original size:21 final size:21
Alignment explanation
Indices: 102982441--102982480 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102982431 ACGGGAAAAG
102982441 AAATGTGTTTAAAAAAAATTT
1 AAATGTGTTTAAAAAAAATTT
* * *
102982462 AAATTTTTTTTAAAAAAAT
1 AAATGTGTTTAAAAAAAAT
102982481 ATATAATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (21 bp):
AAATGTGTTTAAAAAAAATTT
Found at i:102983412 original size:48 final size:48
Alignment explanation
Indices: 102983330--102983423 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
102983320 TTTCTTGGCT
* * *
102983330 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
102983378 TAAAAACACCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACACCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
102983424 AGAATTCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (48 bp):
TAAAAACACCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:102993439 original size:27 final size:27
Alignment explanation
Indices: 102993424--102993479 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
102993414 ATAATGTAAT
* *
102993424 TTTTAAAAATTGTTAATACAATTAAAA
1 TTTTAAAAATTATTAAAACAATTAAAA
*
102993451 TTTTAAAAATTATTAATACAATTAAAA
1 TTTTAAAAATTATTAAAACAATTAAAA
102993478 TT
1 TT
102993480 ATCTATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (27 bp):
TTTTAAAAATTATTAAAACAATTAAAA
Found at i:102993859 original size:9 final size:9
Alignment explanation
Indices: 102993823--102993951 Score: 68
Period size: 9 Copynumber: 13.9 Consensus size: 9
102993813 AATATTTTTC
102993823 TTATAAAAGTA
1 TTATAAAA--A
*
102993834 TTAGAAAAA
1 TTATAAAAA
* *
102993843 TCAGAAAAA
1 TTATAAAAA
102993852 TTATAAAAA
1 TTATAAAAA
102993861 -TA-AAAATA
1 TTATAAAA-A
**
102993869 TTAATATTAA
1 TT-ATAAAAA
102993879 -TATTAAAAA
1 TTA-TAAAAA
* *
102993888 TGATATAAAC
1 TTATA-AAAA
*
102993898 TTAAAAAAA
1 TTATAAAAA
102993907 TTATAAAAA
1 TTATAAAAA
*
102993916 CTTATAAATA
1 -TTATAAAAA
102993926 TTATAAAAA
1 TTATAAAAA
*
102993935 TCTA-ATAAA
1 T-TATAAAAA
102993944 TTATAAAA
1 TTATAAAA
102993952 TTAACAAAGA
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
7 4 0.04
8 6 0.07
9 52 0.58
10 19 0.21
11 9 0.10
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:102993907 original size:19 final size:19
Alignment explanation
Indices: 102993883--102993934 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
102993873 TATTAATATT
*
102993883 AAAAATGATATAAACTTAA
1 AAAAATGATAAAAACTTAA
* *
102993902 AAAAATTATAAAAACTTAT
1 AAAAATGATAAAAACTTAA
* *
102993921 AAATATTATAAAAA
1 AAAAATGATAAAAA
102993935 TCTAATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATGATAAAAACTTAA
Found at i:102999387 original size:18 final size:18
Alignment explanation
Indices: 102999339--102999405 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
102999329 TTATTTATCA
*
102999339 ATATTTTGATATATAAAAT
1 ATATTTT-ATATATAAACT
** *
102999358 ATA-TACATATATAATAGT
1 ATATTTTATATATAA-ACT
102999376 A-ATTTTATATATAAACT
1 ATATTTTATATATAAACT
102999393 ATATTTTATATAT
1 ATATTTTATATAT
102999406 TAAAATTCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
17 12 0.31
18 24 0.62
19 3 0.08
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (18 bp):
ATATTTTATATATAAACT
Found at i:103002561 original size:50 final size:49
Alignment explanation
Indices: 103002466--103002605 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 49
103002456 CATTAAGATT
* * * *
103002466 ATGAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAG
1 ATGAGAGGTCC-CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
*
103002516 ATGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCT-GTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* ** * * *
103002566 ATAAGAACTCCAATGTAAGACCATATCTGGGATATGGCAT
1 ATGAGAGGTCC-CTGTAAGACCATGTCTGGGACATGGCAT
103002606 CGGTAGTACA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 75 0.97
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
ATGAGAGGTCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:103002644 original size:49 final size:49
Alignment explanation
Indices: 103002530--103002652 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
103002520 GAGGTCCCTC
* * *
103002530 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATAAGAACTCCAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCA-CGATACAAAAACTCCAAT
* * * *
103002580 GTAAGACCATATCTGGGATATGGCATCGGTA-G-TACAATAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCACGATACAA-AAAC-TCCAAT
103002629 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
103002653 TTTGGCATGT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
47 4 0.06
48 4 0.06
49 27 0.44
50 27 0.44
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCACGATACAAAAACTCCAAT
Found at i:103018107 original size:12 final size:12
Alignment explanation
Indices: 103018092--103018118 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
103018082 AGTATTTTAA
103018092 TTTTTATAATTT
1 TTTTTATAATTT
103018104 TTTTTATAATTT
1 TTTTTATAATTT
103018116 TTT
1 TTT
103018119 AAAATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTATAATTT
Found at i:103022105 original size:24 final size:26
Alignment explanation
Indices: 103022077--103022129 Score: 67
Period size: 24 Copynumber: 2.1 Consensus size: 26
103022067 GATCAATTTT
103022077 AATATTTATAA-GAA-TGTTTT-TAGA
1 AATATTT-TAATGAATTGTTTTGTAGA
*
103022101 AATATTTTAATTAATTGTTTTGTAGA
1 AATATTTTAATGAATTGTTTTGTAGA
103022127 AAT
1 AAT
103022130 TTAAATAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 9 0.36
25 6 0.24
26 7 0.28
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (26 bp):
AATATTTTAATGAATTGTTTTGTAGA
Found at i:103026272 original size:3 final size:3
Alignment explanation
Indices: 103026264--103026288 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
103026254 ATATTTTATA
103026264 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
103026289 CAATAGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:103030833 original size:19 final size:19
Alignment explanation
Indices: 103030809--103030846 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
103030799 CAATTGTTTT
103030809 AAAATTAA-ATAAGTTTAAA
1 AAAATTAATATAA-TTTAAA
103030828 AAAATTAATATAATTTAAA
1 AAAATTAATATAATTTAAA
103030847 TTTTTAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAAATTAATATAATTTAAA
Found at i:103032226 original size:218 final size:218
Alignment explanation
Indices: 103031848--103032285 Score: 867
Period size: 218 Copynumber: 2.0 Consensus size: 218
103031838 TTCTTAATAG
103031848 AACTTTGGATATGTGGTAAATATTTTCGTTTTAGGGAGTAAATTCTGGTACAGAAATTCCATAGT
1 AACTTTGGATATGTGGTAAATATTTTCGTTTTAGGGAGTAAATTCTGGTACAGAAATTCCATAGT
103031913 AGTCTAACATCATCTATGTATTCAATTGAATGTGTTTTCCGTCTTTTAAGGATTCAGAAAGTGAT
66 AGTCTAACATCATCTATGTATTCAATTGAATGTGTTTTCCGTCTTTTAAGGATTCAGAAAGTGAT
103031978 TTGTTTGTAATTTATGCTTTTGGTTGGTTTAAAATAGTTTAACTATTTTAATGTGACAGTCCAGA
131 TTGTTTGTAATTTATGCTTTTGGTTGGTTTAAAATAGTTTAACTATTTTAATGTGACAGTCCAGA
103032043 TAGCCTAATGGTCTCGTGTATAA
196 TAGCCTAATGGTCTCGTGTATAA
103032066 AACTTTGGATATGTGGTAAATATTTTCGTTTTAGGGAGTAAATTCTGGTACAGAAATTCCATAGT
1 AACTTTGGATATGTGGTAAATATTTTCGTTTTAGGGAGTAAATTCTGGTACAGAAATTCCATAGT
*
103032131 AGTCTAACATCATCTATGTATTCAATTGAATGTGTTTTCCGTCTTTTAAGTATTCAGAAAGTGAT
66 AGTCTAACATCATCTATGTATTCAATTGAATGTGTTTTCCGTCTTTTAAGGATTCAGAAAGTGAT
103032196 TTGTTTGTAATTTATGCTTTTGGTTGGTTTAAAATAGTTTAACTATTTTAATGTGACAGTCCAGA
131 TTGTTTGTAATTTATGCTTTTGGTTGGTTTAAAATAGTTTAACTATTTTAATGTGACAGTCCAGA
103032261 TAGCCTAATGGTCTCGTGTATAA
196 TAGCCTAATGGTCTCGTGTATAA
103032284 AA
1 AA
103032286 ATCTGCTTTC
Statistics
Matches: 219, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 219 1.00
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (218 bp):
AACTTTGGATATGTGGTAAATATTTTCGTTTTAGGGAGTAAATTCTGGTACAGAAATTCCATAGT
AGTCTAACATCATCTATGTATTCAATTGAATGTGTTTTCCGTCTTTTAAGGATTCAGAAAGTGAT
TTGTTTGTAATTTATGCTTTTGGTTGGTTTAAAATAGTTTAACTATTTTAATGTGACAGTCCAGA
TAGCCTAATGGTCTCGTGTATAA
Found at i:103034900 original size:847 final size:850
Alignment explanation
Indices: 103033264--103034965 Score: 3367
Period size: 847 Copynumber: 2.0 Consensus size: 850
103033254 ATATGATTTG
103033264 GAATTGGATTCTGATTGAAATATTCGGGTAACATCTAAATGCATGGCCTTGATGGAATTAGGGAT
1 GAATTGGATTCTGATTGAAATATTCGGGTAACATCTAAATGCATGGCCTTGATGGAATTAGGGAT
103033329 GCAATTTAACTGACAATGTTGTTTTATATTACAAAGTAGTTACAAGTGTTTATTTTGTTGCATTA
66 GCAATTTAACTGACAATGTTGTTTTATATTACAAAGTAGTTACAAGTGTTTATTTTGTTGCATTA
103033394 GAAGATGTTAACTAGGTGTTGTTTTCTTTCTTACGAAGAACGCAGTACATTTGCCTCTTTTGATC
131 GAAGATGTTAACTAGGTGTTGTTTTCTTTCTTACGAAGAACGCAGTACATTTGCCTCTTTTGATC
103033459 TTACGATGAGAGTTTTCTTACAAAGTTTCATATTTGAATCGTATTACTGATTTATTTTTCAAAAA
196 TTACGATGAGAGTTTTCTTACAAAGTTTCATATTTGAATCGTATTACTGATTTATTTTTCAAAAA
103033524 ATCCAAATTACTCATCTTTCGCTTTGGTATTGTTAATTATGTAGAAAACGAAGGTTTCTCTTTTG
261 ATCCAAATTACTCATCTTTCGCTTTGGTATTGTTAATTATGTAGAAAACGAAGGTTTCTCTTTTG
103033589 TGGACGTCGGCTATTCATATCAACCCAAGGTATCTCTCTACAATCTAATGGTTAACAATGGAAGT
326 TGGACGTCGGCTATTCATATCAACCCAAGGTATCTCTCTACAATCTAATGGTTAACAATGGAAGT
103033654 TGAATAAAACCGTGGGTTTTTAGCTGCTTCCATGCAATTTTCTTCTTCATATCTGGAAAATATTA
391 TGAATAAAACCGTGGGTTTTTAGCTGCTTCCATGCAATTTTCTTCTTCATATCTGGAAAATATTA
103033719 CTATCTAATTCAGAAGTACTTCTGGGTAAGATGTCAGAGCCTGAATCGTAAACATAAATCACAGT
456 CTATCTAATTCAGAAGTACTTCTGGGTAAGATGTCAGAGCCTGAATCGTAAACATAAATCACAGT
103033784 TCCTTTCATTTTATAAATAGAATACCGAACTCATTTGAATATCGGAGATCTTATTTCTGGAGTGC
521 TCCTTTCATTTTATAAATAGAATACCGAACTCATTTGAATATCGGAGATCTTATTTCTGGAGTGC
103033849 AATGCCTTTACTATTAAATTAATTTGAATATAGAGAATTTCTATAACTCAATTTTGATACCGAAC
586 AATGCCTTTACTATTAAATTAATTTGAATATAGAGAATTTCTATAACTCAATTTTGATACCGAAC
103033914 CTGTTAGCTTGGTTATGTAAGTTCTTCGGTTTCCCTTTTATTCTCTTTTTTACTTCTCTCTGTTA
651 CTGTTAGCTTGGTTATGTAAGTTCTTCGGTTTCCCTTTTATTCTCTTTTTTACTTCTCTCTGTTA
103033979 ATTTCCCCAAAGCATTAGTTGTGATTTAAAGAAGGTATTAATTACCATTAATGTTACCGTTGCAT
716 ATTTCCCCAAAGCATTAGTTGTGATTTAAAGAAGGTATTAATTACCATTAATGTTACCGTTGCAT
103034044 TATTCGTAATCTGAACCTGCTTTTATATTATTTGGACATCATGCTTTCGATTTTTCTGTTTAGTT
781 TATTCGTAATCTGAACCTGCTTTTATATTATTTGGACATCATGCTTTCGATTTTTCTGTTTAGTT
103034109 GTGAA
846 GTGAA
103034114 GAATTGGATTCTGATTGAAATATTCGGGTAACATCTAAATGCATGGCCTTGATGGAATTAGGGAT
1 GAATTGGATTCTGATTGAAATATTCGGGTAACATCTAAATGCATGGCCTTGATGGAATTAGGGAT
103034179 GCAATTTAACTGACAATGTTGTTTTATATTACAAAGTAGTTACAAGTGTTTATTTTGTTGCATTA
66 GCAATTTAACTGACAATGTTGTTTTATATTACAAAGTAGTTACAAGTGTTTATTTTGTTGCATTA
103034244 GAAGATGTTAACTAGGTGTTGTTTTCTTTCTTACGAAGAACGCAGTACATTTGCCTCTTTTGATC
131 GAAGATGTTAACTAGGTGTTGTTTTCTTTCTTACGAAGAACGCAGTACATTTGCCTCTTTTGATC
103034309 TTACGATGAGAGTTTTCTTAC-AAGTTTCATATTTGAATCGTATTACTGATTTATTTTTC-AAAA
196 TTACGATGAGAGTTTTCTTACAAAGTTTCATATTTGAATCGTATTACTGATTTATTTTTCAAAAA
103034372 ATCCAAATTACTCATCTTTCGCTTTGGTATTGTTAATTATGTAGAAAACGAAGGTTTCTCTTTTG
261 ATCCAAATTACTCATCTTTCGCTTTGGTATTGTTAATTATGTAGAAAACGAAGGTTTCTCTTTTG
103034437 TGGACGTCGGCTATTCATATCAACCCAAGGTATCTCTCTACAATCTAATGGTTAACAATGGAAGT
326 TGGACGTCGGCTATTCATATCAACCCAAGGTATCTCTCTACAATCTAATGGTTAACAATGGAAGT
103034502 TGAATAAAACCGTGGGTTTTTAGCTGCTTCCATGCAATTTTCTTCTTCATATCTGG-AAATATTA
391 TGAATAAAACCGTGGGTTTTTAGCTGCTTCCATGCAATTTTCTTCTTCATATCTGGAAAATATTA
103034566 CTATCT-ATTCAGAAGTACTTCTGGGTAAGATGTCAGAGCCTGAATCGTAAACATAAATCACAGT
456 CTATCTAATTCAGAAGTACTTCTGGGTAAGATGTCAGAGCCTGAATCGTAAACATAAATCACAGT
103034630 TCCTTTCATTTTATAAATAGAATACCGAACTCATTTGAATATCGGAGATCTTATTTTCTGGAGTG
521 TCCTTTCATTTTATAAATAGAATACCGAACTCATTTGAATATCGGAGATCTTA-TTTCTGGAGTG
103034695 CAATGCCTTTACTATTAAATTAATTTGAATATAGAGAATTTCTATAACTCAATTTTGATACCGAA
585 CAATGCCTTTACTATTAAATTAATTTGAATATAGAGAATTTCTATAACTCAATTTTGATACCGAA
103034760 CCTGTTAGCTTGGTTATGTAAGTTCTTCGGTTTCCCTTTTATTCTCTTTTTTACTTCTCTCTGTT
650 CCTGTTAGCTTGGTTATGTAAGTTCTTCGGTTTCCCTTTTATTCTCTTTTTTACTTCTCTCTGTT
103034825 AATTTCCCCAAAGCATTAGTTGTGATTTAAAGAAGGTATTAATTACCATTAATGTTACCGTTGCA
715 AATTTCCCCAAAGCATTAGTTGTGATTTAAAGAAGGTATTAATTACCATTAATGTTACCGTTGCA
103034890 TTATTCGTAATCTGAACCTGCTTTTATATTATTTGGACATCATGCTTTCGATTTTTCTGTTTAGT
780 TTATTCGTAATCTGAACCTGCTTTTATATTATTTGGACATCATGCTTTCGATTTTTCTGTTTAGT
103034955 TGTGAA
845 TGTGAA
103034961 GAATT
1 GAATT
103034966 TTTTATCTGG
Statistics
Matches: 851, Mismatches: 0, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
846 111 0.13
847 296 0.35
848 190 0.22
849 38 0.04
850 216 0.25
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (850 bp):
GAATTGGATTCTGATTGAAATATTCGGGTAACATCTAAATGCATGGCCTTGATGGAATTAGGGAT
GCAATTTAACTGACAATGTTGTTTTATATTACAAAGTAGTTACAAGTGTTTATTTTGTTGCATTA
GAAGATGTTAACTAGGTGTTGTTTTCTTTCTTACGAAGAACGCAGTACATTTGCCTCTTTTGATC
TTACGATGAGAGTTTTCTTACAAAGTTTCATATTTGAATCGTATTACTGATTTATTTTTCAAAAA
ATCCAAATTACTCATCTTTCGCTTTGGTATTGTTAATTATGTAGAAAACGAAGGTTTCTCTTTTG
TGGACGTCGGCTATTCATATCAACCCAAGGTATCTCTCTACAATCTAATGGTTAACAATGGAAGT
TGAATAAAACCGTGGGTTTTTAGCTGCTTCCATGCAATTTTCTTCTTCATATCTGGAAAATATTA
CTATCTAATTCAGAAGTACTTCTGGGTAAGATGTCAGAGCCTGAATCGTAAACATAAATCACAGT
TCCTTTCATTTTATAAATAGAATACCGAACTCATTTGAATATCGGAGATCTTATTTCTGGAGTGC
AATGCCTTTACTATTAAATTAATTTGAATATAGAGAATTTCTATAACTCAATTTTGATACCGAAC
CTGTTAGCTTGGTTATGTAAGTTCTTCGGTTTCCCTTTTATTCTCTTTTTTACTTCTCTCTGTTA
ATTTCCCCAAAGCATTAGTTGTGATTTAAAGAAGGTATTAATTACCATTAATGTTACCGTTGCAT
TATTCGTAATCTGAACCTGCTTTTATATTATTTGGACATCATGCTTTCGATTTTTCTGTTTAGTT
GTGAA
Found at i:103036301 original size:20 final size:21
Alignment explanation
Indices: 103036276--103036321 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
103036266 TCCCGGTTCG
*
103036276 GGTTTCCTCTTTA-GGTTTTA
1 GGTTTCCGCTTTAGGGTTTTA
*
103036296 GGTTTCCGGTTTAGGGGTTTTA
1 GGTTTCCGCTTTA-GGGTTTTA
103036318 GGTT
1 GGTT
103036322 CCCGTATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
22 11 0.50
ACGTcount: A:0.09, C:0.11, G:0.30, T:0.50
Consensus pattern (21 bp):
GGTTTCCGCTTTAGGGTTTTA
Found at i:103036333 original size:21 final size:22
Alignment explanation
Indices: 103036289--103036335 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
103036279 TTCCTCTTTA
*
103036289 GGTTTTAGGTTTCCGGTTTAGG
1 GGTTTTAGGTTTCCCGTTTAGG
103036311 GGTTTTAGG-TTCCCGTATT-GG
1 GGTTTTAGGTTTCCCGT-TTAGG
103036332 GGTT
1 GGTT
103036336 CGGGGTTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.09, C:0.11, G:0.36, T:0.45
Consensus pattern (22 bp):
GGTTTTAGGTTTCCCGTTTAGG
Found at i:103036371 original size:15 final size:15
Alignment explanation
Indices: 103036337--103036374 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
103036327 ATTGGGGTTC
103036337 GGGG-TTGGGTTTTA
1 GGGGCTTGGGTTTTA
103036351 -GGGCTTGGGTTTTA
1 GGGGCTTGGGTTTTA
103036365 GGGGCTTGGG
1 GGGGCTTGGG
103036375 GCTTGGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 10 0.45
15 9 0.41
ACGTcount: A:0.05, C:0.05, G:0.53, T:0.37
Consensus pattern (15 bp):
GGGGCTTGGGTTTTA
Found at i:103036559 original size:25 final size:25
Alignment explanation
Indices: 103036531--103036578 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
103036521 TTCTTCTTTG
*
103036531 TTTAAATTTTGTTTATTTTTCTTGC
1 TTTAAATTTTGTTTATTTATCTTGC
* *
103036556 TTTAATTTTTGTTTCTTTATCTT
1 TTTAAATTTTGTTTATTTATCTT
103036579 TGATCTAAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71
Consensus pattern (25 bp):
TTTAAATTTTGTTTATTTATCTTGC
Done.