Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 45 of 320
Found at i:12957039 original size:28 final size:27
Alignment explanation
Indices: 12956917--12957067 Score: 124
Period size: 27 Copynumber: 5.4 Consensus size: 27
12956907 CAACTGTGTG
* * *
12956917 TCCCCTGTTTTTCAGATTTTACAGTTT
1 TCCCCTATTTTTTAGATTTTACAATTT
**
12956944 TCCCCTATTTTTTAGATTTTATTATTT
1 TCCCCTATTTTTTAGATTTTACAATTT
* * * *
12956971 TACCCTTATTTTTTAAAAATTTTATAGTTT
1 T-CCCCTATTTTTT--AGATTTTACAATTT
12957001 TGCCCCT-TTTTTTAGATTTTACAATTT
1 T-CCCCTATTTTTTAGATTTTACAATTT
* * * *
12957028 CTCCTCTATTTTTCAAAATTTACAATTTT
1 -TCCCCTATTTTTTAGATTTTACAA-TTT
12957057 TCCCCTATTTT
1 TCCCCTATTTT
12957068 CAAATTTTGC
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
27 38 0.38
28 36 0.36
29 9 0.09
30 16 0.16
ACGTcount: A:0.21, C:0.19, G:0.05, T:0.56
Consensus pattern (27 bp):
TCCCCTATTTTTTAGATTTTACAATTT
Found at i:12957080 original size:27 final size:27
Alignment explanation
Indices: 12956925--12957084 Score: 97
Period size: 27 Copynumber: 5.8 Consensus size: 27
12956915 TGTCCCCTGT
* *
12956925 TTTTCAGATTTTAC-AGTTTTCCCCTA
1 TTTTCAAATTTTACAATTTTTCCCCTA
* * ** * *
12956951 TTTTTTAGATTTTATTATTTTACCCTTA
1 -TTTTCAAATTTTACAATTTTTCCCCTA
* * * * *
12956979 TTTTTTAAAAATTTTATAGTTTTGCCCCTT
1 --TTTT-CAAATTTTACAATTTTTCCCCTA
* * * *
12957009 TTTTTAGATTTTACAATTTCTCCTCTA
1 TTTTCAAATTTTACAATTTTTCCCCTA
*
12957036 TTTTTCAAAATTTACAATTTTTCCCCTA
1 -TTTTCAAATTTTACAATTTTTCCCCTA
*
12957064 TTTTCAAATTTTGCAATTTTT
1 TTTTCAAATTTTACAATTTTT
12957085 TCCAAAATTT
Statistics
Matches: 102, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 46 0.45
28 35 0.34
29 5 0.05
30 16 0.16
ACGTcount: A:0.23, C:0.16, G:0.04, T:0.56
Consensus pattern (27 bp):
TTTTCAAATTTTACAATTTTTCCCCTA
Found at i:12958077 original size:4 final size:4
Alignment explanation
Indices: 12958063--12958092 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
12958053 TTAAAAATTT
12958063 TAAA T-AA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
12958093 CAAAATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:12964102 original size:41 final size:37
Alignment explanation
Indices: 12963996--12964106 Score: 105
Period size: 38 Copynumber: 2.9 Consensus size: 37
12963986 TCGGATAGTT
* *
12963996 CGAAGCAAAGTTGACACCCAGTGTCTCATCACCCTAAC
1 CGAAGTAAAG-TGACACCCAGTGTCTCATCAACCTAAC
** ** * *
12964034 CGAAGTAAAGTGGTACCCAGTACCTCATCGAATCTATC
1 CGAAGTAAAGTGACACCCAGTGTCTCATC-AACCTAAC
12964072 CGAAGTACAATAGTGACACCCAGTGTCTCATCAAC
1 CGAAGT--AA-AGTGACACCCAGTGTCTCATCAAC
12964107 TCGAGGTCGA
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
37 15 0.27
38 20 0.36
40 4 0.07
41 17 0.30
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (37 bp):
CGAAGTAAAGTGACACCCAGTGTCTCATCAACCTAAC
Found at i:12964763 original size:22 final size:24
Alignment explanation
Indices: 12964721--12964764 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
12964711 TAACTAAGTT
12964721 TACTTACTTTTCTAACTTAATTCA
1 TACTTACTTTTCTAACTTAATTCA
12964745 TACTT-CTTTTCT-ACTTAATT
1 TACTTACTTTTCTAACTTAATT
12964765 TCTTGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.25, C:0.20, G:0.00, T:0.55
Consensus pattern (24 bp):
TACTTACTTTTCTAACTTAATTCA
Found at i:12965108 original size:13 final size:13
Alignment explanation
Indices: 12965092--12965117 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12965082 AGTTTCTCCT
12965092 TTTCTTTTCTTTC
1 TTTCTTTTCTTTC
12965105 TTTCTTTTCTTTC
1 TTTCTTTTCTTTC
12965118 CCACTTTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTTTTCTTTC
Found at i:12965351 original size:15 final size:15
Alignment explanation
Indices: 12965316--12965349 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
12965306 ATCTATTTAC
*
12965316 TTAAATAAAAAGTAA
1 TTAAATAAAAAATAA
12965331 TTAAATAAAAAAT-A
1 TTAAATAAAAAATAA
12965345 TTAAA
1 TTAAA
12965350 ATTGTATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (15 bp):
TTAAATAAAAAATAA
Found at i:12968536 original size:2 final size:2
Alignment explanation
Indices: 12968529--12968563 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
12968519 TACCTTGGTG
12968529 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
12968564 ATTATAGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:12970254 original size:27 final size:27
Alignment explanation
Indices: 12970224--12970276 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
12970214 TAGAATTTTT
12970224 AATTA-TTATCCATGTGATTGATTAAAA
1 AATTATTTATCCATGT-ATTGATTAAAA
*
12970251 AATTATTTATCCTTGTATTGATTAAA
1 AATTATTTATCCATGTATTGATTAAA
12970277 CAAAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (27 bp):
AATTATTTATCCATGTATTGATTAAAA
Found at i:12972256 original size:16 final size:15
Alignment explanation
Indices: 12972227--12972255 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
12972217 AGGTATAGTA
12972227 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
12972242 AAATATTTAAAAAA
1 AAATATTTAAAAAA
12972256 AAAGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:12975646 original size:22 final size:22
Alignment explanation
Indices: 12975620--12975662 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12975610 AATTTTATAT
12975620 AATTTAATGAAT-AAAATAAAAA
1 AATTTAAT-AATCAAAATAAAAA
*
12975642 AATTTAATCATCAAAATAAAA
1 AATTTAATAATCAAAATAAAA
12975663 TGTCTTTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (22 bp):
AATTTAATAATCAAAATAAAAA
Found at i:12986335 original size:27 final size:26
Alignment explanation
Indices: 12986299--12986411 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
12986289 CAGCATGGCT
* **
12986299 ACCAGAACAGATAATGTGACAGAGTT
1 ACCAGAACAGATAATGTGGCAGAGCC
12986325 ACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
12986353 ACCAGAACAGAAATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
12986380 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
12986407 ACCAG
1 ACCAG
12986412 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 53 0.70
28 16 0.21
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:12986363 original size:54 final size:54
Alignment explanation
Indices: 12986299--12986411 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
12986289 CAGCATGGCT
* **
12986299 ACCAGAACAGATA-ATGTGACAGAGTTACCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCC
* * *
12986353 ACCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
12986407 ACCAG
1 ACCAG
12986412 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCC
Found at i:12989583 original size:75 final size:75
Alignment explanation
Indices: 12989383--12989584 Score: 280
Period size: 75 Copynumber: 2.7 Consensus size: 75
12989373 ATATCTGTCA
* * *
12989383 ATTTATCTGACTAGCGTTGGGCGCAACCTTCGTCAGTTTATCTGACTAGTACAAGCCACACTATT
1 ATTTATCCGACTAGCGCTGGGCGCAACCTTCGTCAGTTTATCTGACTAGTGCAAGCCACACTATT
12989448 ATATTTTCTG
66 ATATTTTCTG
* * * * **
12989458 ATTTATCCGACTAGTGCTGGGCACAACCTTCGTTAGTTTATCTGACTAGTGCAGGGTACACTATT
1 ATTTATCCGACTAGCGCTGGGCGCAACCTTCGTCAGTTTATCTGACTAGTGCAAGCCACACTATT
12989523 ATATTTGTC-G
66 ATATTT-TCTG
* * *
12989533 GTTTATCCGACTAGCGCTGGGCGCAACCTTGGTCAGTTTATCTGAATAGTGC
1 ATTTATCCGACTAGCGCTGGGCGCAACCTTCGTCAGTTTATCTGACTAGTGC
12989585 TAGACACATC
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
75 109 0.98
76 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (75 bp):
ATTTATCCGACTAGCGCTGGGCGCAACCTTCGTCAGTTTATCTGACTAGTGCAAGCCACACTATT
ATATTTTCTG
Found at i:12989979 original size:2 final size:2
Alignment explanation
Indices: 12989972--12990038 Score: 125
Period size: 2 Copynumber: 33.5 Consensus size: 2
12989962 GTGATGTACT
*
12989972 TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
12990014 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
12990039 TTTGTATTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:12991804 original size:13 final size:13
Alignment explanation
Indices: 12991786--12991813 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12991776 AAGAAATATG
12991786 TCAGGGAACTATA
1 TCAGGGAACTATA
12991799 TCAGGGAACTATA
1 TCAGGGAACTATA
12991812 TC
1 TC
12991814 TCGATGATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (13 bp):
TCAGGGAACTATA
Found at i:12995982 original size:69 final size:69
Alignment explanation
Indices: 12995900--12996032 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 69
12995890 CTCAATATCC
*
12995900 TCACCTCTTTTCAAGTAAATTTCGAGGATAAAATTTTTTAAAAGGG-AAAGAATTGTAATGATTC
1 TCACCTCTTTTCAAGTAAATTTCGAGGATAAAATTTTCT-AAAGGGAAAAGAATTGTAATGATTC
12995964 AAAAT
65 AAAAT
* * *
12995969 TCACCTCTTTTCAAGTAAATTTTGGGGATGAAATTTTCTAAAGGGAAAAGAATTGTAATGATTC
1 TCACCTCTTTTCAAGTAAATTTCGAGGATAAAATTTTCTAAAGGGAAAAGAATTGTAATGATTC
12996033 GAAAGTCAGT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
68 6 0.10
69 53 0.90
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.35
Consensus pattern (69 bp):
TCACCTCTTTTCAAGTAAATTTCGAGGATAAAATTTTCTAAAGGGAAAAGAATTGTAATGATTCA
AAAT
Found at i:12997410 original size:75 final size:75
Alignment explanation
Indices: 12997287--12997574 Score: 351
Period size: 75 Copynumber: 3.8 Consensus size: 75
12997277 TGTAATTATG
* * ** * * *
12997287 TATATCTGTCAGTTTATCTGACTAGGATTGGGCGCAACCTTCGTCAATTTATCTGACTAGTGCAG
1 TATATCTATCGGTTTATCCAACTAGCACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
12997352 GGCACACTGT
66 GGCACACTGT
* * * * *
12997362 TATATTTATCGGTTTATCCAACTAGCACTAGGTACAACTTTCGTCAATTTATTTGACTAGTGCAG
1 TATATCTATCGGTTTATCCAACTAGCACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
*
12997427 GACACACTGT
66 GGCACACTGT
* * * * *
12997437 TATATCTATCGGTTTATCTAACTAGCGCTGGGCACAACCTTTGTTAGTTTATCTGACTAGTGCAG
1 TATATCTATCGGTTTATCCAACTAGCACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
*
12997502 GGCACACTAT
66 GGCACACTGT
* * * * * *
12997512 TATATCTGTCGGTTTATCCTACTAGCATTGGGCGCAACCTTCGTCAGTTTATTTGACTAGTGC
1 TATATCTATCGGTTTATCCAACTAGCACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGC
12997575 TAAGAACATC
Statistics
Matches: 179, Mismatches: 34, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 179 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (75 bp):
TATATCTATCGGTTTATCCAACTAGCACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
GGCACACTGT
Found at i:12997563 original size:150 final size:150
Alignment explanation
Indices: 12997287--12997574 Score: 398
Period size: 150 Copynumber: 1.9 Consensus size: 150
12997277 TGTAATTATG
* * * *
12997287 TATATCTGTCAGTTTATCTGACTAGGATTGGGCGCAACCTTCGTCAATTTATCTGACTAGTGCAG
1 TATATCTATCAGTTTATCTAACTAGGACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
* * * *
12997352 GGCACACTGTTATATTTATCGGTTTATCCAACTAGCACTAGGTACAACTTTCGTCAATTTATTTG
66 GGCACACTATTATATCTATCGGTTTATCCAACTAGCACTAGGCACAACCTTCGTCAATTTATTTG
12997417 ACTAGTGCAGGACACACTGT
131 ACTAGTGCAGGACACACTGT
* * * *
12997437 TATATCTATCGGTTTATCTAACTAGCG-CTGGGCACAACCTTTGTTAGTTTATCTGACTAGTGCA
1 TATATCTATCAGTTTATCTAACTAG-GACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCA
* * * * * *
12997501 GGGCACACTATTATATCTGTCGGTTTATCCTACTAGCATTGGGCGCAACCTTCGTCAGTTTATTT
65 GGGCACACTATTATATCTATCGGTTTATCCAACTAGCACTAGGCACAACCTTCGTCAATTTATTT
12997566 GACTAGTGC
130 GACTAGTGC
12997575 TAAGAACATC
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
150 118 0.99
151 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (150 bp):
TATATCTATCAGTTTATCTAACTAGGACTGGGCACAACCTTCGTCAATTTATCTGACTAGTGCAG
GGCACACTATTATATCTATCGGTTTATCCAACTAGCACTAGGCACAACCTTCGTCAATTTATTTG
ACTAGTGCAGGACACACTGT
Found at i:12999857 original size:25 final size:26
Alignment explanation
Indices: 12999818--12999878 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
12999808 TTAAAGTTTA
*
12999818 TATTTTTTTT-GTT-AATTTGACCTT
1 TATTTTTTTTAGTTAAATTTGACCCT
* *
12999842 TCTTTTTTTTATTTAAATTTGACCCT
1 TATTTTTTTTAGTTAAATTTGACCCT
12999868 TATTTTTTTTA
1 TATTTTTTTTA
12999879 AAAAAAGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 9 0.29
25 2 0.06
26 20 0.65
ACGTcount: A:0.18, C:0.10, G:0.05, T:0.67
Consensus pattern (26 bp):
TATTTTTTTTAGTTAAATTTGACCCT
Found at i:13000063 original size:16 final size:18
Alignment explanation
Indices: 13000032--13000068 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
13000022 TTCATGAACT
*
13000032 TTTTATAATTTTTTTA-A
1 TTTTATAATATTTTTATA
13000049 TTTTA-AATATTTTTATA
1 TTTTATAATATTTTTATA
13000066 TTT
1 TTT
13000069 ATTGACTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTATAATATTTTTATA
Found at i:13001375 original size:22 final size:22
Alignment explanation
Indices: 13001349--13001425 Score: 120
Period size: 22 Copynumber: 3.5 Consensus size: 22
13001339 GTCCCTGGCC
13001349 CACACGGGCGTGTGCCTCCCTT
1 CACACGGGCGTGTGCCTCCCTT
13001371 CACACGGGCGTGTGCCTCCCTT
1 CACACGGGCGTGTGCCTCCCTT
*
13001393 CACATGGGCGTGTGCC-CCTCTT
1 CACACGGGCGTGTGCCTCC-CTT
*
13001415 CACATGGGCGT
1 CACACGGGCGT
13001426 TTGACCTCTC
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
21 2 0.04
22 51 0.96
ACGTcount: A:0.10, C:0.38, G:0.29, T:0.23
Consensus pattern (22 bp):
CACACGGGCGTGTGCCTCCCTT
Found at i:13005697 original size:33 final size:32
Alignment explanation
Indices: 13005635--13005697 Score: 74
Period size: 33 Copynumber: 1.9 Consensus size: 32
13005625 TGTGCTATCA
*
13005635 TTTTTAACTTTCAAGACTTACTTTGTGTTGCT
1 TTTTTAACTTTCAAGACTTACTTTATGTTGCT
* *
13005667 TTTTTAAACTTTTAAGA-TTTCTTCTATGTTG
1 TTTTT-AACTTTCAAGACTTACTT-TATGTTG
13005698 TCATAGTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
32 10 0.38
33 16 0.62
ACGTcount: A:0.21, C:0.13, G:0.11, T:0.56
Consensus pattern (32 bp):
TTTTTAACTTTCAAGACTTACTTTATGTTGCT
Found at i:13006903 original size:38 final size:40
Alignment explanation
Indices: 13006824--13006911 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 40
13006814 TTAAAAATAT
* * * *
13006824 TTATATTAAAAATACTACCATACATTTGATAAATGTTTTA
1 TTATATTAAAAATACTACAATAAATATAATAAATGTTTTA
*
13006864 TTATATTAAAAATAC-A-AATAAATATAATAAATTTTTTA
1 TTATATTAAAAATACTACAATAAATATAATAAATGTTTTA
*
13006902 TTTTATTAAA
1 TTATATTAAA
13006912 TATTATTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 26 0.62
39 1 0.02
40 15 0.36
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (40 bp):
TTATATTAAAAATACTACAATAAATATAATAAATGTTTTA
Found at i:13014909 original size:15 final size:17
Alignment explanation
Indices: 13014884--13014917 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
13014874 ATCAACTAAT
13014884 TTTTTTGATATATA-TA
1 TTTTTTGATATATAGTA
13014900 TTTTTT-ATATATAGTA
1 TTTTTTGATATATAGTA
13014916 TT
1 TT
13014918 CATATGTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTTTGATATATAGTA
Found at i:13015599 original size:23 final size:23
Alignment explanation
Indices: 13015544--13015613 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
13015534 TTATTAACAT
*
13015544 TGTTCGTGAACATGCTT-AATTATA
1 TGTTCGTGAACATG-TTCGATTA-A
*
13015568 TGTTCGTGAACATGTTCGTTTAA
1 TGTTCGTGAACATGTTCGATTAA
* *
13015591 TGTTTGTGAGCATGTTCGATTAA
1 TGTTCGTGAACATGTTCGATTAA
13015614 GTTAAATGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 23 0.57
24 17 0.43
ACGTcount: A:0.24, C:0.11, G:0.21, T:0.43
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCGATTAA
Found at i:13016265 original size:3 final size:3
Alignment explanation
Indices: 13016257--13016290 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
13016247 ATTTCAAGCT
*
13016257 TTA TTA TTA TTA TTA TGA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13016291 GTTTGACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:13016546 original size:6 final size:7
Alignment explanation
Indices: 13016527--13016556 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
13016517 GTCTATCATC
13016527 AATTTTT
1 AATTTTT
13016534 AATTTTT
1 AATTTTT
13016541 AATTTTT
1 AATTTTT
13016548 AATTTTT
1 AATTTTT
13016555 AA
1 AA
13016557 AGAAAGTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
AATTTTT
Found at i:13018379 original size:14 final size:15
Alignment explanation
Indices: 13018360--13018388 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
13018350 TAAAAATATT
13018360 AAATAAAAT-TTAAA
1 AAATAAAATATTAAA
13018374 AAATAAAATATTAAA
1 AAATAAAATATTAAA
13018389 GTCATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAATAAAATATTAAA
Found at i:13018570 original size:18 final size:18
Alignment explanation
Indices: 13018547--13018583 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
13018537 AAGTTATTTG
13018547 TTTAAAATTATTTTAAAT
1 TTTAAAATTATTTTAAAT
13018565 TTTAAAATTATTTTAAAT
1 TTTAAAATTATTTTAAAT
13018583 T
1 T
13018584 GTCTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAAAATTATTTTAAAT
Found at i:13020771 original size:16 final size:17
Alignment explanation
Indices: 13020740--13020772 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13020730 CATAAGTATA
13020740 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
13020757 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
13020773 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:13021078 original size:45 final size:45
Alignment explanation
Indices: 13021005--13021109 Score: 174
Period size: 45 Copynumber: 2.3 Consensus size: 45
13020995 TTGTTCAATA
*
13021005 GATGTCATAGCATCTCCCATCCACGGTCTTATTTATCTTTGACAT
1 GATGCCATAGCATCTCCCATCCACGGTCTTATTTATCTTTGACAT
* *
13021050 GATGCCATAGCGTCTCCCATCCATGGTCTTATTTATCTTTGACAT
1 GATGCCATAGCATCTCCCATCCACGGTCTTATTTATCTTTGACAT
*
13021095 GATGCCATAGTATCT
1 GATGCCATAGCATCT
13021110 TTCAACTATG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (45 bp):
GATGCCATAGCATCTCCCATCCACGGTCTTATTTATCTTTGACAT
Found at i:13021154 original size:46 final size:46
Alignment explanation
Indices: 13021070--13021335 Score: 297
Period size: 46 Copynumber: 5.8 Consensus size: 46
13021060 CGTCTCCCAT
* * * *
13021070 CCATGGTCTTATTTATCTTT-GA-CATGATGCCATAGTATCTTTCAA
1 CCATGGTCTTATTCAT-TTTCTATCATGTTGCCATGGTATCTTTCAA
* *
13021115 CTATGGTCTTACTCATTTTCTATCATGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTCTATCATGTTGCCATGGTATCTTTCAA
* ** *
13021161 CCATGTTCTTATTCATTTTCCCGTCGTGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTT-CTATCATGTTGCCATGGTATCTTTCAA
* * * *
13021208 ACATGGTCTTATTCA-TTTCATGTCACGCTGCCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTC-TATCATGTTGCCATGGTATCTTTCAA
* *
13021254 CCATGGTCTTATTCATTTTCTTTCATGTTACCATGGTATCTTTCAA
1 CCATGGTCTTATTCATTTTCTATCATGTTGCCATGGTATCTTTCAA
* **
13021300 CCATGGTCCTACACA-TTTCATATCATGTTGCCATGG
1 CCATGGTCTTATTCATTTTC-TATCATGTTGCCATGG
13021336 ATAGGATCAT
Statistics
Matches: 187, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.02
45 19 0.10
46 124 0.66
47 41 0.22
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
CCATGGTCTTATTCATTTTCTATCATGTTGCCATGGTATCTTTCAA
Found at i:13021214 original size:93 final size:92
Alignment explanation
Indices: 13021070--13021335 Score: 324
Period size: 93 Copynumber: 2.9 Consensus size: 92
13021060 CGTCTCCCAT
* * * *
13021070 CCATGGTCTTATTTATCTTT--GACATGATGCCATAGTATCTTTC-AACTATGGTCTTACTCATT
1 CCATGGTCTTATTCAT-TTTCCGTCATGTTGCCATGGTATCTTTCAAAC-ATGGTCTTACTCA-T
13021132 TTC-TATCATGTTGCCATGGTATCTTTCAA
63 TTCATATCATGTTGCCATGGTATCTTTCAA
* * *
13021161 CCATGTTCTTATTCATTTTCCCGTCGTGTTGCCATGGTATCTTTCAAACATGGTCTTATTCATTT
1 CCATGGTCTTATTCATTTT-CCGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTACTCATTT
* * *
13021226 CATGTCACGCTGCCATGGTATCTTTCAA
65 CATATCATGTTGCCATGGTATCTTTCAA
** * * * *
13021254 CCATGGTCTTATTCATTTTCTTTCATGTTACCATGGTATCTTTCAACCATGGTCCTACACATTTC
1 CCATGGTCTTATTCATTTTCCGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTACTCATTTC
13021319 ATATCATGTTGCCATGG
66 ATATCATGTTGCCATGG
13021336 ATAGGATCAT
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
90 3 0.02
91 14 0.09
92 56 0.38
93 72 0.49
94 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.42
Consensus pattern (92 bp):
CCATGGTCTTATTCATTTTCCGTCATGTTGCCATGGTATCTTTCAAACATGGTCTTACTCATTTC
ATATCATGTTGCCATGGTATCTTTCAA
Found at i:13023179 original size:21 final size:20
Alignment explanation
Indices: 13023140--13023189 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
13023130 ATAATATAAT
13023140 TATTTAAT-TAATAAATATC
1 TATTTAATATAATAAATATC
*
13023159 TTTTATAATATAATAAATATC
1 TATT-TAATATAATAAATATC
13023180 TATTTAATAT
1 TATTTAATAT
13023190 CTAATACATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 3 0.11
20 10 0.37
21 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTAATATAATAAATATC
Found at i:13023358 original size:29 final size:27
Alignment explanation
Indices: 13023287--13023358 Score: 65
Period size: 29 Copynumber: 2.5 Consensus size: 27
13023277 TATCATATAA
* *
13023287 ATATCTTATAATATAATTATAATAAATT
1 ATATTTTATAAT-TTATTATAATAAATT
*
13023315 A-ATTTAATATCATTTATTACTAATAAATAT
1 ATATTT--TATAATTTATTA-TAATAAAT-T
13023345 ATATTTTATAATTT
1 ATATTTTATAATTT
13023359 GAAATCTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
27 3 0.09
28 6 0.17
29 20 0.57
30 2 0.06
31 4 0.11
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (27 bp):
ATATTTTATAATTTATTATAATAAATT
Found at i:13025237 original size:11 final size:11
Alignment explanation
Indices: 13025221--13025259 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
13025211 TAAAAAGAAG
13025221 AAAGAAACGAA
1 AAAGAAACGAA
13025232 AAAGAAA--AA
1 AAAGAAACGAA
13025241 GAAAGAAACGAA
1 -AAAGAAACGAA
13025253 AAAGAAA
1 AAAGAAA
13025260 AAAAAAGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
9 2 0.08
10 7 0.28
11 14 0.56
12 2 0.08
ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAGAAACGAA
Found at i:13025238 original size:15 final size:17
Alignment explanation
Indices: 13025212--13025259 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 17
13025202 TCAAAGAAGT
13025212 AAAAAGAAGAAAGAAACG
1 AAAAAGAA-AAAGAAACG
13025230 AAAAAGAAAAAGAAA-G
1 AAAAAGAAAAAGAAACG
*
13025246 -AAACGAAAAAGAAA
1 AAAAAGAAAAAGAAA
13025260 AAAAAAGAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 13 0.45
16 1 0.03
17 7 0.24
18 8 0.28
ACGTcount: A:0.77, C:0.04, G:0.19, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAGAAACG
Found at i:13025244 original size:21 final size:21
Alignment explanation
Indices: 13025218--13025267 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
13025208 AAGTAAAAAG
13025218 AAGAAAGAAACGAAAAAGAAA
1 AAGAAAGAAACGAAAAAGAAA
13025239 AAGAAAGAAACGAAAAAGAAA
1 AAGAAAGAAACGAAAAAGAAA
*
13025260 AAAAAAGA
1 AAGAAAGA
13025268 GTACAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.78, C:0.04, G:0.18, T:0.00
Consensus pattern (21 bp):
AAGAAAGAAACGAAAAAGAAA
Found at i:13025267 original size:25 final size:24
Alignment explanation
Indices: 13025212--13025264 Score: 76
Period size: 21 Copynumber: 2.3 Consensus size: 24
13025202 TCAAAGAAGT
*
13025212 AAAAAGAAGAAAGAAACGAAAAAG
1 AAAAAAAAGAAAGAAACGAAAAAG
13025236 ---AAAAAGAAAGAAACGAAAAAG
1 AAAAAAAAGAAAGAAACGAAAAAG
13025257 AAAAAAAA
1 AAAAAAAA
13025265 AGAGTACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
21 20 0.80
24 5 0.20
ACGTcount: A:0.79, C:0.04, G:0.17, T:0.00
Consensus pattern (24 bp):
AAAAAAAAGAAAGAAACGAAAAAG
Found at i:13033065 original size:18 final size:18
Alignment explanation
Indices: 13033042--13033084 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
13033032 TTTGGTGCAT
*
13033042 CTTTCTTAACTATCGATG
1 CTTTCTTAACTATAGATG
13033060 CTTTCTTAACTATAGATG
1 CTTTCTTAACTATAGATG
*
13033078 CTGTCTT
1 CTTTCTT
13033085 GGTGCAGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (18 bp):
CTTTCTTAACTATAGATG
Found at i:13035133 original size:16 final size:16
Alignment explanation
Indices: 13035107--13035145 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
13035097 AGAAAAATTA
13035107 TATTTTTCAT-CTTTC
1 TATTTTTCATCCTTTC
13035122 TATTTTTCCATCCTTTC
1 TATTTTT-CATCCTTTC
*
13035139 AATTTTT
1 TATTTTT
13035146 TTTTCTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 3 0.14
17 11 0.52
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTTCATCCTTTC
Found at i:13035153 original size:16 final size:18
Alignment explanation
Indices: 13035134--13035167 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13035124 TTTTTCCATC
13035134 CTTT-CAATTTT-TTTTT
1 CTTTCCAATTTTCTTTTT
13035150 CTTTCCAATTTTCTTTTT
1 CTTTCCAATTTTCTTTTT
13035168 ACTCTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (18 bp):
CTTTCCAATTTTCTTTTT
Found at i:13036248 original size:17 final size:17
Alignment explanation
Indices: 13036223--13036256 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13036213 TCTTTTAATG
13036223 TGTAATAAAAAAAATTA
1 TGTAATAAAAAAAATTA
*
13036240 TGTATTAAAAAAAATTA
1 TGTAATAAAAAAAATTA
13036257 ATATTTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
TGTAATAAAAAAAATTA
Found at i:13036264 original size:17 final size:17
Alignment explanation
Indices: 13036228--13036261 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
13036218 TAATGTGTAA
*
13036228 TAAAAAAAATTATGTAT
1 TAAAAAAAATTATATAT
13036245 TAAAAAAAATTA-ATAT
1 TAAAAAAAATTATATAT
13036261 T
1 T
13036262 TAATACGCTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
TAAAAAAAATTATATAT
Found at i:13060862 original size:7 final size:7
Alignment explanation
Indices: 13060850--13060876 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
13060840 ATAATCATCA
13060850 GAAAAAT
1 GAAAAAT
13060857 GAAAAAT
1 GAAAAAT
13060864 GAAAAAT
1 GAAAAAT
13060871 GAAAAA
1 GAAAAA
13060877 CAAGCTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (7 bp):
GAAAAAT
Found at i:13065352 original size:26 final size:26
Alignment explanation
Indices: 13065321--13065370 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
13065311 TTTTATATTA
*
13065321 AAAAAAATA-TATT-TTTTGTTTTTT
1 AAAAAAATATTATTATTTTATTTTTT
13065345 AAATAAAATATTATTATTTTATTTTT
1 AAA-AAAATATTATTATTTTATTTTT
13065371 ATTAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 6 0.27
26 4 0.18
27 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (26 bp):
AAAAAAATATTATTATTTTATTTTTT
Found at i:13065371 original size:26 final size:25
Alignment explanation
Indices: 13065318--13065381 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
13065308 TTTTTTTATA
*
13065318 TTAAAAAAAATATATTTTTTGTTTT
1 TTAAAAAAAATATATTTTTTGATTT
*
13065343 TTAAATAAAATATTATTATTTT-ATTT
1 TTAAAAAAAATA-TATT-TTTTGATTT
**
13065369 TTATTAAAAATAT
1 TTAAAAAAAATAT
13065382 TTAAATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 12 0.38
26 16 0.50
27 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
TTAAAAAAAATATATTTTTTGATTT
Found at i:13065375 original size:29 final size:26
Alignment explanation
Indices: 13065308--13065378 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 26
13065298 GCACAACACC
*
13065308 TTTTTTTATATTAAAAAAAATATATT
1 TTTTTTTTTATTAAAAAAAATATATT
* *
13065334 TTTTGTTTT-TTAAATAAAATATTATT
1 TTTTTTTTTATTAAAAAAAATA-TATT
13065360 ATTTTATTTTTATTAAAAA
1 -TTTT-TTTTTATTAAAAA
13065379 TATTTAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 11 0.31
26 11 0.31
27 4 0.11
28 4 0.11
29 6 0.17
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (26 bp):
TTTTTTTTTATTAAAAAAAATATATT
Found at i:13065692 original size:4 final size:4
Alignment explanation
Indices: 13065680--13065742 Score: 51
Period size: 4 Copynumber: 15.5 Consensus size: 4
13065670 CACCCACCGG
* *
13065680 AAGA GAGA AAGAA AAGA AAGA AATGA GAAG- AA-A AAGA AAAA GAAGA
1 AAGA AAGA AAG-A AAGA AAGA AA-GA -AAGA AAGA AAGA AAGA -AAGA
13065726 AAGA AAGA AA-A AAGA AA
1 AAGA AAGA AAGA AAGA AA
13065743 ATTATTATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
3 7 0.15
4 29 0.60
5 10 0.21
6 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (4 bp):
AAGA
Found at i:13065699 original size:9 final size:9
Alignment explanation
Indices: 13065685--13065735 Score: 52
Period size: 9 Copynumber: 5.6 Consensus size: 9
13065675 ACCGGAAGAG
13065685 AGAAAGAAA
1 AGAAAGAAA
13065694 AGAAAGAAA
1 AGAAAGAAA
*
13065703 TGAGAAGAAAA
1 AGA-AAG-AAA
13065714 AGAAA-AAGA
1 AGAAAGAA-A
13065723 AGAAAG-AA
1 AGAAAGAAA
13065731 AGAAA
1 AGAAA
13065736 AAAGAAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 8 0.22
9 18 0.50
10 5 0.14
11 5 0.14
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (9 bp):
AGAAAGAAA
Found at i:13065721 original size:22 final size:19
Alignment explanation
Indices: 13065680--13065742 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 19
13065670 CACCCACCGG
*
13065680 AAGAGAGAAAGAAAAGAAAGA
1 AAGAAAGAAA-AAAA-AAAGA
13065701 AATGAGAAGAAAAAGAAAAAG-
1 AA-GA-AAGAAAAA-AAAAAGA
*
13065722 AAGAAAGAAAGAAAAAAGA
1 AAGAAAGAAAAAAAAAAGA
13065741 AA
1 AA
13065743 ATTATTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 6 0.17
19 9 0.25
20 2 0.06
21 4 0.11
22 8 0.22
23 7 0.19
ACGTcount: A:0.75, C:0.00, G:0.24, T:0.02
Consensus pattern (19 bp):
AAGAAAGAAAAAAAAAAGA
Found at i:13065967 original size:60 final size:61
Alignment explanation
Indices: 13065892--13066011 Score: 197
Period size: 60 Copynumber: 2.0 Consensus size: 61
13065882 GTAATTTATT
* * *
13065892 TTTTGTAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATAATGTTATAAATTTTTGTA
1 TTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGAATAATGTTATAAATTGTTGTA
*
13065953 TTTT-TAATTATTTTAAAATTAATTTATTAGTAATTTAGAATTATGTTATAAATTGTTGT
1 TTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGAATAATGTTATAAATTGTTGT
13066012 GTTTACTTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
60 51 0.93
61 4 0.07
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (61 bp):
TTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGAATAATGTTATAAATTGTTGTA
Found at i:13065995 original size:33 final size:32
Alignment explanation
Indices: 13065898--13066006 Score: 93
Period size: 33 Copynumber: 3.5 Consensus size: 32
13065888 TATTTTTTGT
*
13065898 AATTATTTTAAAATTAATTTGTTAGTAATTTAG
1 AATTATGTTAAAATTAATTT-TTAGTAATTTAG
* * * **
13065931 GATAATGTT---ATAAATTTTT-GT-ATTTTT
1 AATTATGTTAAAATTAATTTTTAGTAATTTAG
*
13065958 AATTATTTTAAAATTAATTTATTAGTAATTTAG
1 AATTATGTTAAAATTAATTT-TTAGTAATTTAG
13065991 AATTATGTTATAAATT
1 AATTATGTTA-AAATT
13066007 GTTGTGTTTA
Statistics
Matches: 56, Mismatches: 13, Indels: 13
0.68 0.16 0.16
Matches are distributed among these distances:
27 10 0.18
28 2 0.04
29 2 0.04
30 14 0.25
31 2 0.04
32 2 0.04
33 19 0.34
34 5 0.09
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (32 bp):
AATTATGTTAAAATTAATTTTTAGTAATTTAG
Found at i:13068258 original size:24 final size:24
Alignment explanation
Indices: 13068202--13068247 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
13068192 TTCTGTTCTG
*
13068202 CTAAATTTTGTGTCTGTTGCTCTT
1 CTAAATTTTGTGTCTATTGCTCTT
13068226 CTAAATTTTGTGTCTATTGCTC
1 CTAAATTTTGTGTCTATTGCTC
13068248 ATTTGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.52
Consensus pattern (24 bp):
CTAAATTTTGTGTCTATTGCTCTT
Found at i:13068323 original size:22 final size:22
Alignment explanation
Indices: 13068295--13068346 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
13068285 AAGCACCAAA
* *
13068295 CGCGTCTGTAGGCCCTATCAGT
1 CGCGTCTATAGGCCCTACCAGT
13068317 CGCGTCTATAGGCCCTACCAGT
1 CGCGTCTATAGGCCCTACCAGT
13068339 CGCGTCTA
1 CGCGTCTA
13068347 GCAGATAGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (22 bp):
CGCGTCTATAGGCCCTACCAGT
Found at i:13070757 original size:24 final size:24
Alignment explanation
Indices: 13070717--13070785 Score: 66
Period size: 24 Copynumber: 2.9 Consensus size: 24
13070707 TTCTTCGTCT
* * *
13070717 TCATCTTCACCTTCACCCTCGTAC
1 TCATCTTCATCTCCACCCTCATAC
* **
13070741 TCATCTTCATCTCCACCATCATTT
1 TCATCTTCATCTCCACCCTCATAC
* *
13070765 TTATCTTTATCTCCACCCTCA
1 TCATCTTCATCTCCACCCTCA
13070786 GCTTCGTCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.19, C:0.41, G:0.01, T:0.39
Consensus pattern (24 bp):
TCATCTTCATCTCCACCCTCATAC
Found at i:13074834 original size:19 final size:21
Alignment explanation
Indices: 13074806--13074849 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
13074796 CATGTGAGCA
*
13074806 TTTAATAAATT-TTTTAA-AT
1 TTTAAAAAATTCTTTTAATAT
13074825 TTTAAAAAATTCTTTTAATAT
1 TTTAAAAAATTCTTTTAATAT
13074846 TTTA
1 TTTA
13074850 TAATATTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 6 0.27
21 6 0.27
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTAAAAAATTCTTTTAATAT
Found at i:13075784 original size:27 final size:27
Alignment explanation
Indices: 13075732--13075790 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
13075722 AAATTTTCCC
*
13075732 TTTTTTTCTAAATAGATACTTAAAACTTT
1 TTTTTTTCTAAATAGAAAC-T-AAACTTT
13075761 TTTTTTTCTCAAATAGAAAC-AAACTTT
1 TTTTTTTCT-AAATAGAAACTAAACTTT
13075788 TTT
1 TTT
13075791 AGTCCAAGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 10 0.36
29 9 0.32
30 9 0.32
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.51
Consensus pattern (27 bp):
TTTTTTTCTAAATAGAAACTAAACTTT
Found at i:13083250 original size:29 final size:29
Alignment explanation
Indices: 13083217--13083303 Score: 147
Period size: 29 Copynumber: 3.0 Consensus size: 29
13083207 AATTGTTAAC
13083217 GCCACATGGTCATGTGCCAGGCCGTGTAA
1 GCCACATGGTCATGTGCCAGGCCGTGTAA
13083246 GCCACATGGTCATGTGCCAGGCCGTGTAA
1 GCCACATGGTCATGTGCCAGGCCGTGTAA
* * *
13083275 GCCACATGGCCATGTGTCAGGCCATGTAA
1 GCCACATGGTCATGTGCCAGGCCGTGTAA
13083304 CTCACTATTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.21
Consensus pattern (29 bp):
GCCACATGGTCATGTGCCAGGCCGTGTAA
Found at i:13084757 original size:42 final size:42
Alignment explanation
Indices: 13084698--13084807 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
13084688 ATGCCAAAAA
* *
13084698 CCCAGCTATGGTCTTACACGAAGTCTCTTATCGATGTCATAT
1 CCCAGATATGGTCTTACACGAAGTCTCATATCGATGTCATAT
* *
13084740 CTCAGATATGGTCTTACACGAAGTCTCATATTGATGTCATAT
1 CCCAGATATGGTCTTACACGAAGTCTCATATCGATGTCATAT
*
13084782 CCCAGATATGGTCTTACACGTAGTCT
1 CCCAGATATGGTCTTACACGAAGTCT
13084808 TAGTAACCCT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACGAAGTCTCATATCGATGTCATAT
Found at i:13092329 original size:42 final size:42
Alignment explanation
Indices: 13092222--13092330 Score: 114
Period size: 42 Copynumber: 2.5 Consensus size: 42
13092212 TTACCAATGT
* * *
13092222 CATATCCCAAATATGGTCATACATGAGATTCTCGTATCTATGC
1 CATATCCC-AATATGGTCTTACATGAGAGTCTCATATCTATGC
* *
13092265 CAATAGCCCAACTATAGTCTTACATGA-AGTCTCATA-CTGATGC
1 C-ATATCCCAA-TATGGTCTTACATGAGAGTCTCATATCT-ATGC
13092308 CATATCCCAGATATGGTCTTACA
1 CATATCCCA-ATATGGTCTTACA
13092331 CGTAGTCTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
42 20 0.36
43 16 0.29
44 19 0.35
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
CATATCCCAATATGGTCTTACATGAGAGTCTCATATCTATGC
Found at i:13094081 original size:93 final size:93
Alignment explanation
Indices: 13093973--13094143 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
13093963 GCCCCTAAGT
* * *
13093973 GAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13094038 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
13094066 GAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
13094131 CGAGTTCGGATGC
66 CGAGTTCGGATGC
13094144 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:13094159 original size:46 final size:46
Alignment explanation
Indices: 13093968--13094145 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
13093958 AACTCGCCCC
* * ** *
13093968 TAAGTGAACTCGGGCTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
*
13094014 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CTCG---CATCCA
* * **
13094062 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGATATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
13094107 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
13094146 AACCATCCTA
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 66 0.60
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCA
Found at i:13094597 original size:30 final size:30
Alignment explanation
Indices: 13094563--13094622 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
13094553 ATTTAATACG
* *
13094563 AACTTTGGAAAAATTACTCTTTTGTCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
13094593 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
13094623 GGCTCGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:13097823 original size:49 final size:48
Alignment explanation
Indices: 13097693--13097836 Score: 189
Period size: 49 Copynumber: 2.9 Consensus size: 48
13097683 TCTATTGTGA
* *
13097693 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGT
* * * * *
13097744 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
13097793 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
13097837 TAGCTTCGGC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
48 5 0.06
49 40 0.50
50 2 0.03
51 33 0.41
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:13102821 original size:15 final size:15
Alignment explanation
Indices: 13102786--13102822 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
13102776 TAGTTCATAT
13102786 ATTTTTATTTTTTAA
1 ATTTTTATTTTTTAA
* *
13102801 AATTTTATTTTTTTA
1 ATTTTTATTTTTTAA
13102816 ATTTTTA
1 ATTTTTA
13102823 AATTTCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTTATTTTTTAA
Found at i:13106458 original size:96 final size:96
Alignment explanation
Indices: 13106294--13106485 Score: 375
Period size: 96 Copynumber: 2.0 Consensus size: 96
13106284 AAGAGATGAA
*
13106294 ATCACTCCACAAAAATAGAACATGGGACCTTGTGAAACTTCCTAAAGGTAAAAAGGTTGTTTGTT
1 ATCACTCCACAAAAACAGAACATGGGACCTTGTGAAACTTCCTAAAGGTAAAAAGGTTGTTTGTT
13106359 GTAAATGGGTGTTTAAAAAGAAAGAAGGGAC
66 GTAAATGGGTGTTTAAAAAGAAAGAAGGGAC
13106390 ATCACTCCACAAAAACAGAACATGGGACCTTGTGAAACTTCCTAAAGGTAAAAAGGTTGTTTGTT
1 ATCACTCCACAAAAACAGAACATGGGACCTTGTGAAACTTCCTAAAGGTAAAAAGGTTGTTTGTT
13106455 GTAAATGGGTGTTTAAAAAGAAAGAAGGGAC
66 GTAAATGGGTGTTTAAAAAGAAAGAAGGGAC
13106486 TCCAAGAGTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 95 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.24
Consensus pattern (96 bp):
ATCACTCCACAAAAACAGAACATGGGACCTTGTGAAACTTCCTAAAGGTAAAAAGGTTGTTTGTT
GTAAATGGGTGTTTAAAAAGAAAGAAGGGAC
Found at i:13109016 original size:22 final size:21
Alignment explanation
Indices: 13108978--13109040 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
13108968 TTACACCACA
*
13108978 TTGTGGATGAAACCACTCATCG
1 TTGTAGAT-AAACCACTCATCG
*
13109000 TTGTAGATAAACACACTCATTG
1 TTGTAGATAAAC-CACTCATCG
*
13109022 TTGTAGATAAACTACTCAT
1 TTGTAGATAAACCACTCAT
13109041 AATAAAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.27
22 27 0.73
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (21 bp):
TTGTAGATAAACCACTCATCG
Found at i:13111517 original size:15 final size:15
Alignment explanation
Indices: 13111497--13111526 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13111487 CTATGTATGC
*
13111497 AAAATATAAAAGACA
1 AAAATACAAAAGACA
13111512 AAAATACAAAAGACA
1 AAAATACAAAAGACA
13111527 TAATAGTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.10, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAATACAAAAGACA
Found at i:13112766 original size:20 final size:20
Alignment explanation
Indices: 13112729--13112768 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
13112719 CTTGTACGGA
* * *
13112729 TTGCACTTTGGTGTCTCTGT
1 TTGCACTTCGATGCCTCTGT
13112749 TTGCACTTCGATGCCTCTGT
1 TTGCACTTCGATGCCTCTGT
13112769 ATTTGCACTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.07, C:0.25, G:0.23, T:0.45
Consensus pattern (20 bp):
TTGCACTTCGATGCCTCTGT
Found at i:13115604 original size:11 final size:11
Alignment explanation
Indices: 13115568--13115610 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
13115558 AAAAAATTAA
13115568 AAATATATATAT
1 AAATATATAT-T
13115580 AAATAT-T-TT
1 AAATATATATT
*
13115589 CAATATATATT
1 AAATATATATT
13115600 AAATATATATT
1 AAATATATATT
13115611 TATAAAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 6 0.22
10 2 0.07
11 13 0.48
12 6 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (11 bp):
AAATATATATT
Found at i:13115685 original size:21 final size:19
Alignment explanation
Indices: 13115636--13115697 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 19
13115626 TCTTGATTCT
* *
13115636 ATTTTTATATATTTTTTAAG
1 ATTTTTAT-TATTTTTGAAA
*
13115656 ATTATTA-T-TTTTTGAAA
1 ATTTTTATTATTTTTGAAA
*
13115673 TTTTTTATATATTTTTGAAA
1 ATTTTTAT-TATTTTTGAAA
13115693 ATTTT
1 ATTTT
13115698 AGAATTAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
17 12 0.36
18 1 0.03
19 1 0.03
20 19 0.58
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTTTATTATTTTTGAAA
Found at i:13116663 original size:19 final size:20
Alignment explanation
Indices: 13116639--13116676 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13116629 ATTTAAAAAA
*
13116639 ATTTTAA-AAAAATCTTAAT
1 ATTTTAATAAAAATATTAAT
13116658 ATTTTAATAAAAATATTAA
1 ATTTTAATAAAAATATTAA
13116677 AAAAGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTTTAATAAAAATATTAAT
Found at i:13116989 original size:6 final size:6
Alignment explanation
Indices: 13116978--13117017 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
13116968 TCTTCCTCCC
*
13116978 CCCAAA CCCAAA CCCAAA CCCAAA CCCCAAC CCCAAA CCC
1 CCCAAA CCCAAA CCCAAA CCCAAA -CCCAAA CCCAAA CCC
13117018 CTCCTTTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.42, C:0.57, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCAAA
Found at i:13117012 original size:13 final size:13
Alignment explanation
Indices: 13116977--13117018 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
13116967 TTCTTCCTCC
13116977 CCCCAAACCCAAA
1 CCCCAAACCCAAA
13116990 -CCCAAACCCAAA
1 CCCCAAACCCAAA
*
13117002 CCCCAACCCCAAA
1 CCCCAAACCCAAA
13117015 CCCC
1 CCCC
13117019 TCCTTTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (13 bp):
CCCCAAACCCAAA
Found at i:13118678 original size:6 final size:6
Alignment explanation
Indices: 13118669--13118699 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
13118659 GGAATTGCAT
13118669 GTTGAA GTTGAA GTTGAA GTTGAA GTTGAA G
1 GTTGAA GTTGAA GTTGAA GTTGAA GTTGAA G
13118700 ATGCTTGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (6 bp):
GTTGAA
Found at i:13123623 original size:19 final size:18
Alignment explanation
Indices: 13123587--13123621 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13123577 ATAGGAACTA
13123587 TATAAAATTTAAAAAAAT
1 TATAAAATTTAAAAAAAT
*
13123605 TATACAATTTAAAAAAA
1 TATAAAATTTAAAAAAA
13123622 ATAGCGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAAATTTAAAAAAAT
Found at i:13125757 original size:117 final size:117
Alignment explanation
Indices: 13125609--13125842 Score: 380
Period size: 117 Copynumber: 2.0 Consensus size: 117
13125599 GATGAGGAAG
*
13125609 AAGGATACTTAATTTATTACCTTAATTAAAGCTTTCTCTCTTTAACCCATA-TTTTCTCTCACTA
1 AAGGATACTTAATTTATTACCTTAATTAAAGCTTTCTCTCTTTAACCCAAACTTTT-TCTCACTA
* *
13125673 TACTATAGAAACCATAAGCTTCAATGGAGAGATTAAGGATGTAAACATGCTTA
65 TACTATAGAAACCATAAACTTCAACGGAGAGATTAAGGATGTAAACATGCTTA
*
13125726 AAGGATACTTAATTTTTTACCTTAATTAAAGCTTTCTCTCTTTAACCCAAACTTTTTCTCACTAT
1 AAGGATACTTAATTTATTACCTTAATTAAAGCTTTCTCTCTTTAACCCAAACTTTTTCTCACTAT
* * * *
13125791 ACTATAGGAACCCTAAACTTTAACGGAGAGATTGAGGATGTAAACATGCTTA
66 ACTATAGAAACCATAAACTTCAACGGAGAGATTAAGGATGTAAACATGCTTA
13125843 GGAGGTGATT
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
117 104 0.96
118 4 0.04
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (117 bp):
AAGGATACTTAATTTATTACCTTAATTAAAGCTTTCTCTCTTTAACCCAAACTTTTTCTCACTAT
ACTATAGAAACCATAAACTTCAACGGAGAGATTAAGGATGTAAACATGCTTA
Found at i:13127698 original size:13 final size:13
Alignment explanation
Indices: 13127680--13127709 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13127670 CTACCTAGAG
13127680 ATATTTAGAAGAT
1 ATATTTAGAAGAT
13127693 ATATTTAGAAGAT
1 ATATTTAGAAGAT
13127706 ATAT
1 ATAT
13127710 AAAACAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (13 bp):
ATATTTAGAAGAT
Found at i:13130301 original size:8 final size:8
Alignment explanation
Indices: 13130288--13130316 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
13130278 TTATGTTTAG
13130288 TATATTAT
1 TATATTAT
13130296 TATATTAT
1 TATATTAT
13130304 TATATTAT
1 TATATTAT
13130312 TATAT
1 TATAT
13130317 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:13130349 original size:5 final size:5
Alignment explanation
Indices: 13130339--13130389 Score: 95
Period size: 5 Copynumber: 10.4 Consensus size: 5
13130329 TTATGTTTTA
13130339 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
13130388 AT
1 AT
13130390 GAACTAAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.09
5 41 0.91
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:13130564 original size:9 final size:9
Alignment explanation
Indices: 13130550--13130576 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
13130540 TAATTTTGAT
13130550 GTTTTAGAA
1 GTTTTAGAA
13130559 GTTTTAGAA
1 GTTTTAGAA
13130568 GTTTTAGAA
1 GTTTTAGAA
13130577 CAAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (9 bp):
GTTTTAGAA
Found at i:13131689 original size:15 final size:15
Alignment explanation
Indices: 13131669--13131725 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
13131659 CGATGAATTT
13131669 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
13131684 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
*
13131699 ATCGAATTTATATTG
1 ATTGAATTTATATTG
13131714 ATTGAA-TTATAT
1 ATTGAATTTATAT
13131726 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 6 0.17
15 30 0.83
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:13131699 original size:26 final size:28
Alignment explanation
Indices: 13131666--13131723 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 28
13131656 ATGCGATGAA
*
13131666 TTTATTGAATTTATATTGATTGAAATTAT
1 TTTATCGAATTTATATTGATTG-AATTAT
13131695 TTTGATCGAATTTATATTGATTGAATTAT
1 TTT-ATCGAATTTATATTGATTGAATTAT
13131724 ATAATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.53
Consensus pattern (28 bp):
TTTATCGAATTTATATTGATTGAATTAT
Found at i:13132156 original size:21 final size:23
Alignment explanation
Indices: 13132097--13132162 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
13132087 GCTTTATCGA
13132097 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
13132120 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
13132142 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
13132163 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 17 0.47
ACGTcount: A:0.15, C:0.20, G:0.24, T:0.41
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:13134684 original size:9 final size:9
Alignment explanation
Indices: 13134658--13134700 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
13134648 AGTTTTGTAA
13134658 TTTTTGGAC
1 TTTTTGGAC
* *
13134667 TCTTCGGAC
1 TTTTTGGAC
13134676 TTTTTGGAC
1 TTTTTGGAC
13134685 TTTTTGGAC
1 TTTTTGGAC
13134694 TTTTTGG
1 TTTTTGG
13134701 TTTAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.09, C:0.14, G:0.23, T:0.53
Consensus pattern (9 bp):
TTTTTGGAC
Found at i:13138253 original size:16 final size:15
Alignment explanation
Indices: 13138221--13138252 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
13138211 AACATATAAT
*
13138221 AAGATTAATAAAAAA
1 AAGATTGATAAAAAA
13138236 AAGATTGATAAAAAA
1 AAGATTGATAAAAAA
13138251 AA
1 AA
13138253 ATATTGTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.19
Consensus pattern (15 bp):
AAGATTGATAAAAAA
Found at i:13142090 original size:26 final size:26
Alignment explanation
Indices: 13142061--13142139 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
13142051 AATTGTAATA
*
13142061 AAAAAATAATATGAAATAAATTAAAG
1 AAAAAATAATATAAAATAAATTAAAG
* *
13142087 AAAATATAA-AAAAAAT-AATTAAA-
1 AAAAAATAATATAAAATAAATTAAAG
* *
13142110 ATAAAAAT-ATATTTAAATAAATTTAAG
1 A-AAAAATAATA-TAAAATAAATTAAAG
13142137 AAA
1 AAA
13142140 TCCAGGTTCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
23 2 0.05
24 13 0.32
25 9 0.22
26 16 0.39
27 1 0.02
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.27
Consensus pattern (26 bp):
AAAAAATAATATAAAATAAATTAAAG
Found at i:13142117 original size:15 final size:16
Alignment explanation
Indices: 13142097--13142130 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
13142087 AAAATATAAA
13142097 AAAAATA-ATTAAAAT
1 AAAAATATATTAAAAT
*
13142112 AAAAATATATTTAAAT
1 AAAAATATATTAAAAT
13142128 AAA
1 AAA
13142131 TTTAAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATATATTAAAAT
Found at i:13142724 original size:21 final size:22
Alignment explanation
Indices: 13142689--13142729 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
13142679 AGTTGGAATG
*
13142689 AATAAAAATTCTATTATTAAAA
1 AATAAAAACTCTATTATTAAAA
*
13142711 AATAAAAACT-TATTTTTAA
1 AATAAAAACTCTATTATTAA
13142730 TGTCAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AATAAAAACTCTATTATTAAAA
Found at i:13143088 original size:24 final size:25
Alignment explanation
Indices: 13143032--13143089 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
13143022 TTCATATATA
*
13143032 TATTTTTAAAAATATTATATTATTT
1 TATTTTTAAAAATATAATATTATTT
*
13143057 TA-ATTTAAAAAT-TAATATT-TTT
1 TATTTTTAAAAATATAATATTATTT
13143079 TATTTATTAAA
1 TATTT-TTAAA
13143090 TTTTATTCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.18
23 7 0.25
24 14 0.50
25 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
TATTTTTAAAAATATAATATTATTT
Found at i:13174936 original size:14 final size:13
Alignment explanation
Indices: 13174916--13174947 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
13174906 AATATTTAAC
13174916 TTGTTCTTAATTA
1 TTGTTCTTAATTA
13174929 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
13174943 TTGTT
1 TTGTT
13174948 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:13177314 original size:418 final size:418
Alignment explanation
Indices: 13176537--13177372 Score: 1636
Period size: 418 Copynumber: 2.0 Consensus size: 418
13176527 AACACAATTA
*
13176537 CATTAATACTTATTAACATACGAACTTACCTCGATCACAAAAACAACGGAATAGGATCGACTAAT
1 CATTAATACTTATTAACATACGAACTTACCTCGATCACAAAAACAACAGAATAGGATCGACTAAT
13176602 ACAATACTTTATTTTTCCCTCGATCTAGATCAGTACGTTGCTTTTCTTGATCTATATAATCAAAT
66 ACAATACTTTATTTTTCCCTCGATCTAGATCAGTACGTTGCTTTTCTTGATCTATATAATCAAAT
13176667 TTAACTCATTCAAAATACATTCTATTCAATTTAAATCAAAATTCATATTATATCAATTTTACACT
131 TTAACTCATTCAAAATACATTCTATTCAATTTAAATCAAAATTCATATTATATCAATTTTACACT
13176732 TTTACCCCTTATATTTTAACATCTTTACAATTTAGTCCCTAGCTCATAAAAATGCAAATTCATGC
196 TTTACCCCTTATATTTTAACATCTTTACAATTTAGTCCCTAGCTCATAAAAATGCAAATTCATGC
*
13176797 AATTGAGTCCACACCCATGCTAGCTGAATTTCATCTATGTTCATAGCAGCCCACACATTTCATTA
261 AATTGAGTCCACACCCATGCTAGCCGAATTTCATCTATGTTCATAGCAGCCCACACATTTCATTA
13176862 TTTCACACATTTCACCACTTAATTTTCATATTTCTCAATTTAATCCCTAATTGACAATTTTATAA
326 TTTCACACATTTCACCACTTAATTTTCATATTTCTCAATTTAATCCCTAATTGACAATTTTATAA
13176927 AAAATCACTTAACAAATGTTGTTTATCT
391 AAAATCACTTAACAAATGTTGTTTATCT
13176955 CATTAATACTTATTAACATACGAACTTACCTCGATCACAAAAACAACAGAATAGGATCGACTAAT
1 CATTAATACTTATTAACATACGAACTTACCTCGATCACAAAAACAACAGAATAGGATCGACTAAT
* *
13177020 ACAATACTTTATTTTTCCCTTGATCTAGATCTGTACGTTGCTTTTCTTGATCTATATAATCAAAT
66 ACAATACTTTATTTTTCCCTCGATCTAGATCAGTACGTTGCTTTTCTTGATCTATATAATCAAAT
13177085 TTAACTCATTCAAAATACATTCTATTCAATTTAAATCAAAATTCATATTATATCAATTTTACACT
131 TTAACTCATTCAAAATACATTCTATTCAATTTAAATCAAAATTCATATTATATCAATTTTACACT
13177150 TTTACCCCTTATATTTTAACATCTTTACAATTTAGTCCCTAGCTCATAAAAATGCAAATTCATGC
196 TTTACCCCTTATATTTTAACATCTTTACAATTTAGTCCCTAGCTCATAAAAATGCAAATTCATGC
13177215 AATTGAGTCCACACCCATGCTAGCCGAATTTCATCTATGTTCATAGCAGCCCACACATTTCATTA
261 AATTGAGTCCACACCCATGCTAGCCGAATTTCATCTATGTTCATAGCAGCCCACACATTTCATTA
13177280 TTTCACACATTTCACCACTTAATTTTCATATTTCTCAATTTAATCCCTAATTGACAATTTTATAA
326 TTTCACACATTTCACCACTTAATTTTCATATTTCTCAATTTAATCCCTAATTGACAATTTTATAA
13177345 AAAATCACTTAACAAATGTTGTTTATCT
391 AAAATCACTTAACAAATGTTGTTTATCT
13177373 AACAACAATC
Statistics
Matches: 414, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
418 414 1.00
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (418 bp):
CATTAATACTTATTAACATACGAACTTACCTCGATCACAAAAACAACAGAATAGGATCGACTAAT
ACAATACTTTATTTTTCCCTCGATCTAGATCAGTACGTTGCTTTTCTTGATCTATATAATCAAAT
TTAACTCATTCAAAATACATTCTATTCAATTTAAATCAAAATTCATATTATATCAATTTTACACT
TTTACCCCTTATATTTTAACATCTTTACAATTTAGTCCCTAGCTCATAAAAATGCAAATTCATGC
AATTGAGTCCACACCCATGCTAGCCGAATTTCATCTATGTTCATAGCAGCCCACACATTTCATTA
TTTCACACATTTCACCACTTAATTTTCATATTTCTCAATTTAATCCCTAATTGACAATTTTATAA
AAAATCACTTAACAAATGTTGTTTATCT
Found at i:13178252 original size:20 final size:21
Alignment explanation
Indices: 13178206--13178245 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13178196 AGACTATAAG
13178206 TAAATTTCTCTTTTGGTCACT
1 TAAATTTCTCTTTTGGTCACT
* *
13178227 TAAATTTCTTTTTTTGTCA
1 TAAATTTCTCTTTTGGTCA
13178246 TTCAATTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (21 bp):
TAAATTTCTCTTTTGGTCACT
Found at i:13184103 original size:12 final size:12
Alignment explanation
Indices: 13184086--13184110 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
13184076 ACTTTATATT
13184086 TTTTATATACAA
1 TTTTATATACAA
13184098 TTTTATATACAA
1 TTTTATATACAA
13184110 T
1 T
13184111 ATAATATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATACAA
Found at i:13185913 original size:2 final size:2
Alignment explanation
Indices: 13185906--13185960 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
13185896 CACAATCTAA
13185906 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
13185948 TC TC TC TC TC TC T
1 TC TC TC TC TC TC T
13185961 ATGGTTGTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:13191379 original size:15 final size:15
Alignment explanation
Indices: 13191343--13191381 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
13191333 GCCTTAAATT
*
13191343 GTGAACCCCGGTTAA
1 GTGAACCCCAGTTAA
**
13191358 GCAAACCCCAGTTAA
1 GTGAACCCCAGTTAA
13191373 GTGAACCCC
1 GTGAACCCC
13191382 TATGTAAAAC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.33, G:0.21, T:0.15
Consensus pattern (15 bp):
GTGAACCCCAGTTAA
Found at i:13191505 original size:22 final size:22
Alignment explanation
Indices: 13191480--13191525 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
13191470 TGTGTTAGGT
* *
13191480 GAGCCATGTATTTATGTTATGC
1 GAGCCATGAATATATGTTATGC
13191502 GAGCCATGAATATATGTTATGC
1 GAGCCATGAATATATGTTATGC
13191524 GA
1 GA
13191526 ACCCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (22 bp):
GAGCCATGAATATATGTTATGC
Found at i:13191749 original size:58 final size:58
Alignment explanation
Indices: 13191659--13191978 Score: 260
Period size: 58 Copynumber: 5.6 Consensus size: 58
13191649 AACCTTAGGA
* *
13191659 CTAGGTACATGTGAGCCTATATGCGAACCTTAGGAACTTATGAGCCTTTATGCGAACC
1 CTAGGTACATGCGAGCCTATATGCGAACCTTAGGAACTTGTGAGCCTTTATGCGAACC
* * * *
13191717 CTAGGTACATGTGAGCCTATATGCGAACCTTAGAAACTTGCGAG-CTTGTATGCGAACA
1 CTAGGTACATGCGAGCCTATATGCGAACCTTAGGAACTTGTGAGCCTT-TATGCGAACC
* * * * * *
13191775 CTAGGTACACGCGAGCCTATATGCGAACCCTAGGAACTTGCGAGCCTGTATTCGAGCC
1 CTAGGTACATGCGAGCCTATATGCGAACCTTAGGAACTTGTGAGCCTTTATGCGAACC
* * * * *** *
13191833 CCATGTACATGCGAG-C--T-TGTGAAACTTAGGAA-TT-TGCAATTTTATATGCGAATC
1 CTAGGTACATGCGAGCCTATATGCGAACCTTAGGAACTTGTG-AGCCTT-TATGCGAACC
* * * * * * *
13191887 CTAGGAACCTACGAGCCTATATGCGAACAC-TAGGTACATGTGAGCCTATATGCAAACC
1 CTAGGTACATGCGAGCCTATATGCGAAC-CTTAGGAACTTGTGAGCCTTTATGCGAACC
* * * * *
13191945 CTAGGAACTTGTGAGCCTATATACGAACCCTAGG
1 CTAGGTACATGCGAGCCTATATGCGAACCTTAGG
13191979 TGCATGCAAG
Statistics
Matches: 205, Mismatches: 45, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
52 1 0.00
53 4 0.02
54 29 0.14
55 2 0.01
57 6 0.03
58 155 0.76
59 6 0.03
60 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (58 bp):
CTAGGTACATGCGAGCCTATATGCGAACCTTAGGAACTTGTGAGCCTTTATGCGAACC
Found at i:13191977 original size:87 final size:87
Alignment explanation
Indices: 13191658--13191997 Score: 267
Period size: 87 Copynumber: 4.0 Consensus size: 87
13191648 GAACCTTAGG
* * * ** * *
13191658 ACTAGGTACATGTGAGCCTATATGCGAACCTTAGGAACTTATGAGCCTTTATGCGAACCCTAGGT
1 ACTAGGTACATGCGAGCCTATATGCAAACCCTAGGAACTTGCGAGCCTATATGCGAACCCTAGGA
*
13191723 ACATGTGAGCCTATATGCGAAC
66 ACATGCGAGCCTATATGCGAAC
** * * * * * * **
13191745 -CTTAGAAACTTGCGAGCTTGTATGCGAACACTAGGTACACGCGAGCCTATATGCGAACCCTAGG
1 AC-TAGGTACATGCGAGCCTATATGCAAACCCTAGGAACTTGCGAGCCTATATGCGAACCCTAGG
* * * *
13191809 AACTTGCGAGCCTGTATTCGAGC
65 AACATGCGAGCCTATATGCGAAC
* * * * * * * *** *
13191832 CCCATGTACATGCGAG-CT-TGTG-AAA-CTTAGGAATTTGCAATTTTATATGCGAATCCTAGGA
1 ACTAGGTACATGCGAGCCTATATGCAAACCCTAGGAACTTGCGAGCCTATATGCGAACCCTAGGA
* *
13191893 ACCTACGAGCCTATATGCGAAC
66 ACATGCGAGCCTATATGCGAAC
* * * *
13191915 ACTAGGTACATGTGAGCCTATATGCAAACCCTAGGAACTTGTGAGCCTATATACGAACCCTAGGT
1 ACTAGGTACATGCGAGCCTATATGCAAACCCTAGGAACTTGCGAGCCTATATGCGAACCCTAGGA
* *
13191980 GCATGCAAGCCTATATGC
66 ACATGCGAGCCTATATGC
13191998 CATGCAAGCC
Statistics
Matches: 184, Mismatches: 63, Indels: 12
0.71 0.24 0.05
Matches are distributed among these distances:
83 54 0.29
84 4 0.02
85 6 0.03
86 5 0.03
87 114 0.62
88 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (87 bp):
ACTAGGTACATGCGAGCCTATATGCAAACCCTAGGAACTTGCGAGCCTATATGCGAACCCTAGGA
ACATGCGAGCCTATATGCGAAC
Found at i:13191990 original size:29 final size:29
Alignment explanation
Indices: 13191609--13192030 Score: 235
Period size: 29 Copynumber: 14.3 Consensus size: 29
13191599 GAACATTCAG
* **
13191609 GCCTATATGCGAACCCTAGGTAAATGCAA
1 GCCTATATGCGAACCCTAGGTACATGTGA
*
13191638 ACCTATATGCGAACCTTAGGACTAGGTACATGTGA
1 GCCTATATGCGAACC------CTAGGTACATGTGA
* * * *
13191673 GCCTATATGCGAACCTTAGGAACTTATGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
*
13191702 GCCTTTATGCGAACCCTAGGTACATGTGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* ** * *
13191731 GCCTATATGCGAACCTTAGAAACTTGCGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * * * *
13191760 GCTTGTATGCGAACACTAGGTACACGCGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * *
13191789 GCCTATATGCGAACCCTAGGAACTTGCGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * * * * *
13191818 GCCTGTATTCGAGCCCCATGTACATGCGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * * *
13191847 G-C--T-TGTGAAACTTAGG-A-ATTTGCAA
1 GCCTATATGCGAACCCTAGGTACATGTG--A
*** * * * **
13191872 TTTTATATGCGAATCCTAGGAACCTACGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
*
13191901 GCCTATATGCGAACACTAGGTACATGTGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * *
13191930 GCCTATATGCAAACCCTAGGAACTTGTGA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* * **
13191959 GCCTATATACGAACCCTAGGTGCATGCAA
1 GCCTATATGCGAACCCTAGGTACATGTGA
* *
13191988 GCCTATATGCCATGCAAGCCCTAAGAACATGTGA
1 GCCTATATG-C--G-AA-CCCTAGGTACATGTGA
13192022 GCCTATATG
1 GCCTATATG
13192031 ATCATGTGAA
Statistics
Matches: 290, Mismatches: 84, Indels: 33
0.71 0.21 0.08
Matches are distributed among these distances:
23 3 0.01
24 1 0.00
25 7 0.02
26 1 0.00
28 2 0.01
29 224 0.77
30 2 0.01
31 2 0.01
32 1 0.00
33 2 0.01
34 20 0.07
35 25 0.09
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (29 bp):
GCCTATATGCGAACCCTAGGTACATGTGA
Found at i:13196504 original size:11 final size:11
Alignment explanation
Indices: 13196488--13196521 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13196478 AATATAGTGT
*
13196488 AAAGAAAAGGA
1 AAAGAAAAGAA
*
13196499 AAAGAAAATAA
1 AAAGAAAAGAA
13196510 AAAGAAAAGAA
1 AAAGAAAAGAA
13196521 A
1 A
13196522 TTGAAGATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:13197046 original size:13 final size:15
Alignment explanation
Indices: 13197016--13197048 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
13197006 GTGAATGTAT
13197016 ATTAAATATTTATCA
1 ATTAAATATTTATCA
13197031 ATTAAA-ATTT-TCA
1 ATTAAATATTTATCA
13197044 ATTAA
1 ATTAA
13197049 TTAATTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 4 0.22
15 6 0.33
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTAAATATTTATCA
Found at i:13198628 original size:21 final size:20
Alignment explanation
Indices: 13198590--13198628 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
13198580 GTTTTATAAG
*
13198590 TTTATATCTATTATAAATTT
1 TTTATATCTATTAAAAATTT
*
13198610 TTTATATTTTATTAAAAAT
1 TTTATA-TCTATTAAAAAT
13198629 GTCAAGTGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTATATCTATTAAAAATTT
Found at i:13204453 original size:26 final size:26
Alignment explanation
Indices: 13204424--13204475 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13204414 TGATATGTTT
13204424 GATTATATT-TAATGTTT-ATCAATTTA
1 GATTA-ATTATAAT-TTTGATCAATTTA
*
13204450 GATTAATTATAATTTTGATGAATTTA
1 GATTAATTATAATTTTGATCAATTTA
13204476 CTTAAAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (26 bp):
GATTAATTATAATTTTGATCAATTTA
Found at i:13206651 original size:21 final size:20
Alignment explanation
Indices: 13206625--13206669 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
13206615 AAGCATATAA
* *
13206625 AAAATTTTATAAGGGAGTACC
1 AAAA-TTTATAAGAGAATACC
*
13206646 AAAATTTATGAGAGAATACC
1 AAAATTTATAAGAGAATACC
13206666 AAAA
1 AAAA
13206670 AAACACGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.51, C:0.09, G:0.16, T:0.24
Consensus pattern (20 bp):
AAAATTTATAAGAGAATACC
Found at i:13206751 original size:20 final size:21
Alignment explanation
Indices: 13206726--13206772 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
13206716 AGGGATTGTA
*
13206726 AAAAAATTGTGAGGAAATAC-
1 AAAAAATTATGAGGAAATACT
*
13206746 AAAAAATTATGAGGAATTACT
1 AAAAAATTATGAGGAAATACT
13206767 AAAAAA
1 AAAAAA
13206773 CTTGATGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.60, C:0.04, G:0.15, T:0.21
Consensus pattern (21 bp):
AAAAAATTATGAGGAAATACT
Found at i:13208889 original size:49 final size:50
Alignment explanation
Indices: 13208836--13208933 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
13208826 ATTTGTGGAG
13208836 TATGCCTCATATTTACG-AATTGACGTTTCAAGGAGGAAGAGCCAATGTT
1 TATGCCTCATATTTACGAAATTGACGTTTCAAGGAGGAAGAGCCAATGTT
** *
13208885 TATGCCTTGTATTTACGAAATTGACGTTTCAATGAGGAAGAGCCAATGT
1 TATGCCTCATATTTACGAAATTGACGTTTCAAGGAGGAAGAGCCAATGT
13208934 CTCGATGATG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 15 0.33
50 30 0.67
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (50 bp):
TATGCCTCATATTTACGAAATTGACGTTTCAAGGAGGAAGAGCCAATGTT
Found at i:13210089 original size:19 final size:20
Alignment explanation
Indices: 13210045--13210113 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 20
13210035 TGAGGGATTG
13210045 TCAAAAATTTTGAAGAAGTA
1 TCAAAAATTTTGAAGAAGTA
*
13210065 TCAAAAATTTTGAGGAAGTA
1 TCAAAAATTTTGAAGAAGTA
** * * *
13210085 GAAAAAATTGTGAAGGATTA
1 TCAAAAATTTTGAAGAAGTA
*
13210105 CCAAAAATT
1 TCAAAAATT
13210114 ATGAGGGAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.49, C:0.06, G:0.17, T:0.28
Consensus pattern (20 bp):
TCAAAAATTTTGAAGAAGTA
Found at i:13210091 original size:40 final size:41
Alignment explanation
Indices: 13210023--13210132 Score: 111
Period size: 40 Copynumber: 2.7 Consensus size: 41
13210013 TTTAAAAGCA
* * *
13210023 TACCAAATATTATGAGGG-ATTGTC-AAAAATTTTGAAGAAG
1 TACCAAAAATTATGAGGGAATAG-CAAAAAATTGTGAAGAAG
* * * *
13210063 TATCAAAAATTTTGA-GGAAGTAG-AAAAAATTGTGAAGGAT
1 TACCAAAAATTATGAGGGAA-TAGCAAAAAATTGTGAAGAAG
13210103 TACCAAAAATTATGAGGGAATAGCAAAAAA
1 TACCAAAAATTATGAGGGAATAGCAAAAAA
13210133 ACATGAGAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
39 2 0.04
40 42 0.75
41 12 0.21
ACGTcount: A:0.48, C:0.06, G:0.20, T:0.25
Consensus pattern (41 bp):
TACCAAAAATTATGAGGGAATAGCAAAAAATTGTGAAGAAG
Found at i:13210129 original size:20 final size:19
Alignment explanation
Indices: 13210026--13210131 Score: 68
Period size: 20 Copynumber: 5.3 Consensus size: 19
13210016 AAAAGCATAC
* * *
13210026 CAAATATTATGAGGGATTG
1 CAAAAATTATGAGGAATAG
* * *
13210045 TCAAAAATTTTGAAGAAGTAT
1 -CAAAAATTATGAGGAA-TAG
*
13210066 CAAAAATTTTGAGGAAGTAG
1 CAAAAATTATGAGGAA-TAG
* * * *
13210086 AAAAAATTGTGAAGGATTAC
1 CAAAAATTATG-AGGAATAG
13210106 CAAAAATTATGAGGGAATAG
1 CAAAAATTATGA-GGAATAG
13210126 CAAAAA
1 CAAAAA
13210132 AACATGAGAA
Statistics
Matches: 67, Mismatches: 16, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
19 1 0.01
20 61 0.91
21 5 0.07
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.25
Consensus pattern (19 bp):
CAAAAATTATGAGGAATAG
Found at i:13210911 original size:20 final size:21
Alignment explanation
Indices: 13210896--13210934 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
13210886 CCATGACAGT
13210896 TTACC-AAAAATTATGAAGGA
1 TTACCAAAAAATTATGAAGGA
13210916 TTACCAAAAAATTATGAAG
1 TTACCAAAAAATTATGAAG
13210935 ATGTACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.51, C:0.10, G:0.13, T:0.26
Consensus pattern (21 bp):
TTACCAAAAAATTATGAAGGA
Found at i:13210925 original size:21 final size:20
Alignment explanation
Indices: 13210896--13210952 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
13210886 CCATGACAGT
13210896 TTACCAAAAATTATGAAGGA
1 TTACCAAAAATTATGAAGGA
13210916 TTACCAAAAAATTATGAA-GA
1 TTACC-AAAAATTATGAAGGA
* *
13210936 TGTACTAAAAACTATGA
1 T-TACCAAAAATTATGA
13210953 GAGATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.51, C:0.11, G:0.12, T:0.26
Consensus pattern (20 bp):
TTACCAAAAATTATGAAGGA
Found at i:13220455 original size:6 final size:6
Alignment explanation
Indices: 13220446--13220518 Score: 65
Period size: 6 Copynumber: 11.5 Consensus size: 6
13220436 GAAGACTAAG
* *
13220446 AAAATA AAAATAA AACAACTA AAAATA AAAATA AAAATAA AAAATA AACAGA
1 AAAATA AAAAT-A AA-AA-TA AAAATA AAAATA AAAAT-A AAAATA AAAATA
* * *
13220498 AAAATA AGAATG AAAAGA AAA
1 AAAATA AAAATA AAAATA AAA
13220519 GAAATAAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
6 37 0.69
7 11 0.20
8 5 0.09
9 1 0.02
ACGTcount: A:0.78, C:0.04, G:0.05, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:13220490 original size:19 final size:19
Alignment explanation
Indices: 13220446--13220504 Score: 66
Period size: 19 Copynumber: 3.0 Consensus size: 19
13220436 GAAGACTAAG
13220446 AAAATAAAAATAAAACA-ACTA
1 AAAATAAAAATAAAA-ATA--A
13220467 AAAATAAAAATAAAAATAA
1 AAAATAAAAATAAAAATAA
* *
13220486 AAAATAAACAGAAAAATAA
1 AAAATAAAAATAAAAATAA
13220505 GAATGAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 18 0.51
20 1 0.03
21 16 0.46
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAATAAAAATAAAAATAA
Found at i:13220500 original size:13 final size:13
Alignment explanation
Indices: 13220446--13220501 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
13220436 GAAGACTAAG
*
13220446 AAAATAAAAATAA
1 AAAATAAAAAGAA
*
13220459 AACAACTAAAAA-TA
1 AA-AA-TAAAAAGAA
*
13220473 AAAATAAAAATAA
1 AAAATAAAAAGAA
*
13220486 AAAATAAACAGAA
1 AAAATAAAAAGAA
13220499 AAA
1 AAA
13220502 TAAGAATGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 6 0.17
13 19 0.53
14 5 0.14
15 6 0.17
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.12
Consensus pattern (13 bp):
AAAATAAAAAGAA
Found at i:13222053 original size:19 final size:19
Alignment explanation
Indices: 13222021--13222064 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
13222011 GTAATAAAAT
*
13222021 AAGAA-AATAATAAATGAA
1 AAGAATAATAATAAATAAA
* *
13222039 AATAATAATACTAAATAAA
1 AAGAATAATAATAAATAAA
13222058 AAGAATA
1 AAGAATA
13222065 TGAGTAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.20
Consensus pattern (19 bp):
AAGAATAATAATAAATAAA
Found at i:13222584 original size:13 final size:13
Alignment explanation
Indices: 13222561--13222603 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
13222551 AAAAGGGAGG
13222561 AAGAGAAAAAGAGA
1 AAGA-AAAAAGAGA
*
13222575 AAGAAAAAAGATA
1 AAGAAAAAAGAGA
*
13222588 AAGAAAAAAGGGA
1 AAGAAAAAAGAGA
13222601 AAG
1 AAG
13222604 GAGGAGGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (13 bp):
AAGAAAAAAGAGA
Found at i:13230005 original size:37 final size:37
Alignment explanation
Indices: 13229964--13230139 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
13229954 TTTGACTACT
13229964 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
13230001 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
13230038 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
13230075 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
13230112 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
13230140 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Done.