Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 51 of 320
Found at i:14835739 original size:45 final size:45
Alignment explanation
Indices: 14835668--14835777 Score: 123
Period size: 46 Copynumber: 2.4 Consensus size: 45
14835658 AATAATATTT
* *
14835668 AAAATTTTAAAAAATAATTTCAAATATATATATTTAAAATTTTTAA
1 AAAATATTAAAAAATAATTTCAAATATACAT-TTTAAAATTTTTAA
* **
14835714 AAAATATTATAAAAT-ATTTCAAATATACATTTTAAGTTTTTTAA
1 AAAATATTAAAAAATAATTTCAAATATACATTTTAAAATTTTTAA
*
14835758 AATCAATAATAAACAAATAA
1 AA--AATATTAAA-AAATAA
14835778 AAAAATAAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
44 14 0.26
45 14 0.26
46 20 0.38
47 4 0.08
48 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.40
Consensus pattern (45 bp):
AAAATATTAAAAAATAATTTCAAATATACATTTTAAAATTTTTAA
Found at i:14844292 original size:56 final size:58
Alignment explanation
Indices: 14844183--14844305 Score: 189
Period size: 56 Copynumber: 2.2 Consensus size: 58
14844173 GAATAGAAAT
** *
14844183 AATGAAAATGGAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTTCAAAATGAA
1 AATGAAAATAAAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
14844241 AATGAAAATAAAGAAAT--GAAATAATTTGGAAATGATTAT-GTTTTCTCCAAAATGAA
1 AATGAAAATAAAGAAATGAGAAAT-ATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
14844297 AATGAAAAT
1 AATGAAAAT
14844306 GACCCGCAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
56 30 0.49
57 16 0.26
58 15 0.25
ACGTcount: A:0.50, C:0.04, G:0.16, T:0.30
Consensus pattern (58 bp):
AATGAAAATAAAGAAATGAGAAATATTTGGAAATGATTATAGTTTTCTCCAAAATGAA
Found at i:14851374 original size:3 final size:3
Alignment explanation
Indices: 14851366--14851411 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
14851356 CCTTTGTTAC
14851366 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14851412 AACCCGCTGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14862531 original size:24 final size:25
Alignment explanation
Indices: 14862504--14862550 Score: 87
Period size: 24 Copynumber: 1.9 Consensus size: 25
14862494 ACCATTATCC
14862504 TTCCTTCTTTTTTTTCTT-TTTCTT
1 TTCCTTCTTTTTTTTCTTCTTTCTT
14862528 TTCCTTCTTTTTTTTCTTCTTTC
1 TTCCTTCTTTTTTTTCTTCTTTC
14862551 AAGGATTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (25 bp):
TTCCTTCTTTTTTTTCTTCTTTCTT
Found at i:14862541 original size:12 final size:12
Alignment explanation
Indices: 14862504--14862549 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
14862494 ACCATTATCC
14862504 TTCCTTCTTTTT
1 TTCCTTCTTTTT
*
14862516 TTTCTT-TTTCTT
1 TTCCTTCTTT-TT
14862528 TTCCTTCTTTTT
1 TTCCTTCTTTTT
*
14862540 TTTCTTCTTT
1 TTCCTTCTTT
14862550 CAAGGATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 3 0.10
12 23 0.79
13 3 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (12 bp):
TTCCTTCTTTTT
Found at i:14864373 original size:44 final size:44
Alignment explanation
Indices: 14864323--14864411 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
14864313 AAGTAACAGA
14864323 AACAGTAAGACAC-ATGAGGTGCCTCATCAACACCA-AGTCAAAGT
1 AACAGTAAGACACTATGA-GTGCCTCATCAAC-CCATAGTCAAAGT
* * * *
14864367 AACAGTATGGCACTATTAGTGCCTCATCAACCCATGGTCAAAGT
1 AACAGTAAGACACTATGAGTGCCTCATCAACCCATAGTCAAAGT
14864411 A
1 A
14864412 TTCCCGTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 3 0.08
44 33 0.85
45 3 0.08
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (44 bp):
AACAGTAAGACACTATGAGTGCCTCATCAACCCATAGTCAAAGT
Found at i:14866992 original size:37 final size:37
Alignment explanation
Indices: 14866929--14867001 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
14866919 CTTTAGCTCA
*
14866929 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
* *
14866966 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCC
14867002 AGAATATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCG
Found at i:14867210 original size:50 final size:48
Alignment explanation
Indices: 14867150--14867293 Score: 191
Period size: 50 Copynumber: 2.9 Consensus size: 48
14867140 GCACATCGCC
*
14867150 TACATGTTTCACACTAGCCATTCGGCTTTACCACATATA-CATATCTCATA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATAGCATATCTC--A
* *
14867200 TATATATTTCACATTGACCATTCGGCTTTACCACATATATGCATATCTCA
1 TACATATTTCACATAG-CCATTCGGCTTTACCACATATA-GCATATCTCA
14867250 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCAT
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATA-GCAT
14867294 GTTCATATTC
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
49 2 0.02
50 73 0.86
51 2 0.02
52 8 0.09
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATAGCATATCTCA
Found at i:14867279 original size:100 final size:96
Alignment explanation
Indices: 14867150--14867340 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 96
14867140 GCACATCGCC
* *
14867150 TACATGTTTCACACTAGCCATTCGGCTTTACCACATATA-CATATCTCATATATATATTTCACAT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATAGCATAT-TCATAT-T-CA--TCACAT
*
14867214 TGACCATTCGGCTTTACCACATATATGCATATCTCA
61 TGACCATTCGGCCTTACCACATATATGCATATCTCA
* * *
14867250 TACATATTTCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCATCACATTGGC
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA-GCATATTCATATTCATCACATTGAC
*
14867315 CATTCGGCCTTATCACATATATGCAT
65 CATTCGGCCTTACCACATATATGCAT
14867341 GTTCACATTC
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
97 33 0.40
99 1 0.01
100 38 0.46
101 6 0.07
102 4 0.05
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.36
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATAGCATATTCATATTCATCACATTGACC
ATTCGGCCTTACCACATATATGCATATCTCA
Found at i:14867330 original size:22 final size:22
Alignment explanation
Indices: 14867304--14867375 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
14867294 GTTCATATTC
14867304 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
14867326 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
14867350 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
14867373 ATC
1 ATC
14867376 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:14867332 original size:47 final size:47
Alignment explanation
Indices: 14867208--14867404 Score: 234
Period size: 47 Copynumber: 4.1 Consensus size: 47
14867198 TATATATATT
* * *
14867208 TCACATTGACCATTCGGCTTTACCACATATATGCATATCTCATACATAT-T
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATAT-TC--ACAT-TCA
* * * *
14867258 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* *
14867305 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
* * * *
14867352 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
14867399 TCACAT
1 TCACAT
14867405 AAAATCTTAA
Statistics
Matches: 133, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.01
47 95 0.71
49 2 0.02
50 35 0.26
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTACCACATATATGCATATTCACATTCA
Found at i:14870088 original size:47 final size:47
Alignment explanation
Indices: 14870045--14870140 Score: 167
Period size: 47 Copynumber: 2.0 Consensus size: 47
14870035 TTTAATTATT
14870045 AATTTATTATTTTACCCTTTAAAAAT-CATTAAAAGCTCCTAATTAAC
1 AATTTATTATTTTACCCTTT-AAAATCCATTAAAAGCTCCTAATTAAC
*
14870092 AATTTATTATTTTACCCTTTAAAATCCATTAAAAGTTCCTAATTAAC
1 AATTTATTATTTTACCCTTTAAAATCCATTAAAAGCTCCTAATTAAC
14870139 AA
1 AA
14870141 GCCTTCCACT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 5 0.11
47 42 0.89
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.41
Consensus pattern (47 bp):
AATTTATTATTTTACCCTTTAAAATCCATTAAAAGCTCCTAATTAAC
Found at i:14875441 original size:40 final size:40
Alignment explanation
Indices: 14875352--14875542 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
14875342 TATTACCACA
* * * *
14875352 AGCACAATTGCCTTCGGGTCTTAACCCGG--CATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
* * * *
14875391 CGCACGAATGCTTTCGGGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
*
14875431 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
14875471 AGCACAAATGCCTTCGGGACTTAGCCCGGATCAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
*
14875511 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
14875543 TCATTCAAAT
Statistics
Matches: 138, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 24 0.17
40 110 0.80
41 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACT
Found at i:14883801 original size:40 final size:41
Alignment explanation
Indices: 14883691--14883802 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 41
14883681 TATTACCACA
* * * *
14883691 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAAGCAACT
* * *
14883731 CGCACGAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAAGCAACT
*
14883771 AGCACAAATGCCTTCGGGACTTAGCCCGGATC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATC
14883803 TCATTCAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
40 57 0.93
41 4 0.07
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.21
Consensus pattern (41 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAAGCAACT
Found at i:14886244 original size:22 final size:22
Alignment explanation
Indices: 14886216--14886257 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
14886206 ACATTAACAT
14886216 TCAATTATATTGGCACAATAAA
1 TCAATTATATTGGCACAATAAA
*
14886238 TCAATTATATTGGCATAATA
1 TCAATTATATTGGCACAATA
14886258 CGTCCATGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36
Consensus pattern (22 bp):
TCAATTATATTGGCACAATAAA
Found at i:14903146 original size:17 final size:17
Alignment explanation
Indices: 14903121--14903161 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
14903111 TTTAATTGAT
14903121 TATT-AATATA-ATA-A
1 TATTAAATATATATATA
*
14903135 TATTATATATATATATA
1 TATTAAATATATATATA
14903152 TATTAAATAT
1 TATTAAATAT
14903162 CTTATACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 4 0.18
15 5 0.23
16 3 0.14
17 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATTAAATATATATATA
Found at i:14905713 original size:27 final size:27
Alignment explanation
Indices: 14905683--14905736 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
14905673 TCATACAACC
* *
14905683 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
*
14905710 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
14905737 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:14911435 original size:15 final size:17
Alignment explanation
Indices: 14911402--14911441 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
14911392 AAAATATTTT
14911402 AAATAATT-TAATATAA
1 AAATAATTATAATATAA
14911418 AAATAATTAT-AT-TAA
1 AAATAATTATAATATAA
14911433 AAAT-ATTAT
1 AAATAATTAT
14911442 TAAATTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.22
15 7 0.30
16 10 0.43
17 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATAATTATAATATAA
Found at i:14912667 original size:16 final size:16
Alignment explanation
Indices: 14912646--14912712 Score: 89
Period size: 16 Copynumber: 4.2 Consensus size: 16
14912636 TGAATTTCTG
* *
14912646 ATTACACCTCTATTAC
1 ATTACAGCTCTATTCC
* *
14912662 ATTACAACTTTATTCC
1 ATTACAGCTCTATTCC
14912678 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
14912694 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
14912710 ATT
1 ATT
14912713 CCAGTGAGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.03, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:14924302 original size:5 final size:5
Alignment explanation
Indices: 14924292--14924323 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
14924282 TTGTGTGTTC
14924292 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14924324 TCATAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:14924306 original size:9 final size:9
Alignment explanation
Indices: 14924292--14924322 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
14924282 TTGTGTGTTC
14924292 TTTATTTTA
1 TTTATTTTA
14924301 TTTATTTTA
1 TTTATTTTA
14924310 TTTTATTTTA
1 -TTTATTTTA
14924320 TTT
1 TTT
14924323 TTCATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:14932156 original size:18 final size:18
Alignment explanation
Indices: 14932133--14932167 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14932123 GGATGCGATA
14932133 TTGTCCAGAGTAACTAAG
1 TTGTCCAGAGTAACTAAG
* *
14932151 TTGTCCATAGTCACTAA
1 TTGTCCAGAGTAACTAA
14932168 AGAAGTTGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Consensus pattern (18 bp):
TTGTCCAGAGTAACTAAG
Found at i:14934292 original size:20 final size:22
Alignment explanation
Indices: 14934253--14934292 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
14934243 TCGTTTACTC
*
14934253 TATAAACTTCGATTTTCCTCGA
1 TATAAACTTCGATATTCCTCGA
14934275 TATAAA-TTCGA-ATTCCTC
1 TATAAACTTCGATATTCCTC
14934293 TTTTCTCGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (22 bp):
TATAAACTTCGATATTCCTCGA
Found at i:14940177 original size:40 final size:38
Alignment explanation
Indices: 14940105--14940199 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 38
14940095 TTATCTCGGT
14940105 ATCGCACACTTAGTGCCTCATATAACCAAAGCTATTCCA
1 ATCGCACACTTAGTG-CTCATATAACCAAAGCTATTCCA
* * * **
14940144 ACTCGCACACTTAGTGCT-ATTTATAGCCGAAGCTGTTTGA
1 A-TCGCACACTTAGTGCTCA--TATAACCAAAGCTATTCCA
14940184 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
14940200 CTAACATAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
38 1 0.02
39 18 0.38
40 29 0.60
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.28
Consensus pattern (38 bp):
ATCGCACACTTAGTGCTCATATAACCAAAGCTATTCCA
Found at i:14941751 original size:47 final size:47
Alignment explanation
Indices: 14941693--14941808 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
14941683 GAGAGCCAAC
* *
14941693 GTAAGACCATGTCTGGCATATGGAATCGACATTCAGACGAGTGCTAGT
1 GTAAGA-CATGTCTGGCACATGGAATCGACATTCAGACGAGTGCTAAT
* * * * * * *
14941741 GTATGACATGTTTGGGACATGGCATTGGCATTGAGACGAGTGCTAAT
1 GTAAGACATGTCTGGCACATGGAATCGACATTCAGACGAGTGCTAAT
* *
14941788 GTAAGACATGTTTGGGACATG
1 GTAAGACATGTCTGGCACATG
14941809 CTTCGGCCTC
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
47 53 0.91
48 5 0.09
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (47 bp):
GTAAGACATGTCTGGCACATGGAATCGACATTCAGACGAGTGCTAAT
Found at i:14942751 original size:13 final size:13
Alignment explanation
Indices: 14942719--14942751 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
14942709 GCCCCATAGG
*
14942719 CGTGTGGTCCGGC
1 CGTGTGTTCCGGC
14942732 CGTGTGTTCCGGC
1 CGTGTGTTCCGGC
14942745 CGTGTGT
1 CGTGTGT
14942752 CCCTTGTACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.27, G:0.42, T:0.30
Consensus pattern (13 bp):
CGTGTGTTCCGGC
Found at i:14943057 original size:21 final size:20
Alignment explanation
Indices: 14943031--14943071 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
14943021 TTAGAATTAA
14943031 TTCCACACGGGCGTGTTGCCC
1 TTCCACACGGGCGTG-TGCCC
*
14943052 TTCCACACGGGGGTGTGCCC
1 TTCCACACGGGCGTGTGCCC
14943072 CATTTCAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.10, C:0.37, G:0.32, T:0.22
Consensus pattern (20 bp):
TTCCACACGGGCGTGTGCCC
Found at i:14945469 original size:22 final size:22
Alignment explanation
Indices: 14945444--14945488 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14945434 CTTCAATCAT
*
14945444 TCAAGCATTAT-AAGCCAAGATA
1 TCAACCATTATAAAGCCAA-ATA
*
14945466 TCAACCATTTTAAAGCCAAATA
1 TCAACCATTATAAAGCCAAATA
14945488 T
1 T
14945489 ATACATGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.27
Consensus pattern (22 bp):
TCAACCATTATAAAGCCAAATA
Found at i:14948678 original size:12 final size:15
Alignment explanation
Indices: 14948644--14948679 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
14948634 TTATTTTTCT
14948644 TTTCTTCTTCTCCCC
1 TTTCTTCTTCTCCCC
*
14948659 TTTCTTCTTCTCCCT
1 TTTCTTCTTCTCCCC
14948674 TTTCTT
1 TTTCTT
14948680 TTTATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTCTTCTTCTCCCC
Found at i:14951038 original size:13 final size:12
Alignment explanation
Indices: 14951003--14951052 Score: 59
Period size: 13 Copynumber: 4.2 Consensus size: 12
14950993 AAAATAGAAC
14951003 TAAA-TTAAAT-
1 TAAATTTAAATA
*
14951013 TAAATTAAAATA
1 TAAATTTAAATA
14951025 TAAATCTTAAATA
1 TAAAT-TTAAATA
14951038 TTAAATTTAAATA
1 -TAAATTTAAATA
14951051 TA
1 TA
14951053 GTAAAGAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 7 0.21
13 13 0.38
14 5 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:14953194 original size:6 final size:6
Alignment explanation
Indices: 14953179--14953226 Score: 87
Period size: 6 Copynumber: 7.8 Consensus size: 6
14953169 GCTGAAGGTC
14953179 CCCCCTT CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCC
1 CCCCC-T CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCC
14953227 CTCCATCACG
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 36 0.88
7 5 0.12
ACGTcount: A:0.00, C:0.83, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCCCT
Found at i:14953334 original size:19 final size:19
Alignment explanation
Indices: 14953291--14953336 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
14953281 TAATACTAGT
* *
14953291 TTAATATTTTTTAAATCTG
1 TTAATATTTTTTAAAGCAG
14953310 TT-ATATTTTATT-AAGCAG
1 TTAATATTTT-TTAAAGCAG
14953328 TTAATATTT
1 TTAATATTT
14953337 AATTTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 13 0.57
19 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (19 bp):
TTAATATTTTTTAAAGCAG
Found at i:14955526 original size:42 final size:43
Alignment explanation
Indices: 14955440--14955649 Score: 212
Period size: 43 Copynumber: 4.9 Consensus size: 43
14955430 ATCGAGATGT
** *
14955440 GATTACATGTAAGAAAATGTCTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
*
14955483 GATTACATGTCAGACCATGTCTGGG-CATTGGCATTGTACTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
* * * *
14955525 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGA
* * * * * *
14955568 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATA-TGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TACTGA
* * * *
14955611 GATAACATGTAAGACCATATCTGGGATA-TGACATTGTAC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAC
14955650 GAGCTTATGT
Statistics
Matches: 141, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
41 2 0.01
42 46 0.33
43 90 0.64
44 3 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTACTGA
Found at i:14955583 original size:85 final size:86
Alignment explanation
Indices: 14955430--14955636 Score: 222
Period size: 85 Copynumber: 2.4 Consensus size: 86
14955420 ACATTAGGTT
* * ** * * *
14955430 ATCGAGATGTGATTACATGTAAGAAAATGTCTGGGACATTGGCATTGTATTGAGATTACATGTCA
1 ATCGATATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAA
*
14955495 GACCATGTCTGGG-CATTGGC
66 GACCATGTCTGGGACAGTGGC
* * * * *
14955515 ATTG-TACTGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CGATTTCGTGT
1 ATCGATA-TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAATGAGATTACATGT
*
14955578 AAGACCCTGTCTGGGACAGTGGC
64 AAGACCATGTCTGGGACAGTGGC
* * *
14955601 ATCGATATGTGATAACATGTAAGACCATATCTGGGA
1 ATCGATATGAGATTACATGTAAGACCATGTCTGGGA
14955637 TATGACATTG
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
84 1 0.01
85 59 0.60
86 37 0.37
87 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (86 bp):
ATCGATATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAATGAGATTACATGTAA
GACCATGTCTGGGACAGTGGC
Found at i:14966753 original size:18 final size:18
Alignment explanation
Indices: 14966717--14966756 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14966707 AATTATAATA
* **
14966717 TTGAATTGAACATTCGAT
1 TTGAATTAAACATGAGAT
14966735 TTGAATTAAACATGAGAT
1 TTGAATTAAACATGAGAT
14966753 TTGA
1 TTGA
14966757 GTACATTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (18 bp):
TTGAATTAAACATGAGAT
Found at i:14966933 original size:21 final size:20
Alignment explanation
Indices: 14966907--14966983 Score: 84
Period size: 21 Copynumber: 3.8 Consensus size: 20
14966897 GTGGATCAGC
14966907 TCTTACGAGCTTCTGTTAAG
1 TCTTACGAGCTTCTGTTAAG
* *
14966927 ATCTTACGAGCTTTTGTTCAAC
1 -TCTTACGAGCTTCTGTT-AAG
* *
14966949 TCTTATGAGCTTCTGTTTAG
1 TCTTACGAGCTTCTGTTAAG
*
14966969 -CTTTCGAGCTTCTGT
1 TCTTACGAGCTTCTGT
14966984 CGGTGTTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 13 0.28
20 1 0.02
21 31 0.66
22 2 0.04
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.44
Consensus pattern (20 bp):
TCTTACGAGCTTCTGTTAAG
Found at i:14969422 original size:28 final size:28
Alignment explanation
Indices: 14969382--14969441 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
14969372 TCCTCAACAT
* *
14969382 AATTCACAGGTGGCTTACTTTGAGCATC
1 AATTCACAAGTGGCTCACTTTGAGCATC
* *
14969410 AATTCACAAGTGGCTCATTTTGAGTATC
1 AATTCACAAGTGGCTCACTTTGAGCATC
14969438 AATT
1 AATT
14969442 TATCATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (28 bp):
AATTCACAAGTGGCTCACTTTGAGCATC
Found at i:14971499 original size:42 final size:41
Alignment explanation
Indices: 14971415--14971607 Score: 185
Period size: 39 Copynumber: 4.6 Consensus size: 41
14971405 CCCTATGCTG
* * *
14971415 AGATGGTAAGCAAATATTATACGAA-TAAAATAAATATTCCTTA
1 AGATGGTAA-AAAATATTATAC-AAGTCAAA-AAATAATCCTTA
* *
14971458 ACATGATAAATAAATATTATACAAGTCAAAAAATAATCCTTA
1 AGATGGTAAA-AAATATTATACAAGTCAAAAAATAATCCTTA
*
14971500 AGATGGT-AAACA-ATTATACAAGTCAAAAAATAATCCTTA
1 AGATGGTAAAAAATATTATACAAGTCAAAAAATAATCCTTA
* * *
14971539 AGATGGTAAACAAATATTTTACAAGTACAAAAAAAATATTTCTTA
1 AGATGGTAAA-AAATATTATACAAGT-C--AAAAAATAATCCTTA
* *
14971584 AGATGCTAGACAAATATTATACAA
1 AGATGGTA-AAAAATATTATACAA
14971608 ATACTAAAAC
Statistics
Matches: 126, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
39 34 0.27
40 4 0.03
41 4 0.03
42 28 0.22
43 23 0.18
45 32 0.25
46 1 0.01
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.28
Consensus pattern (41 bp):
AGATGGTAAAAAATATTATACAAGTCAAAAAATAATCCTTA
Found at i:14971584 original size:45 final size:45
Alignment explanation
Indices: 14971415--14971710 Score: 206
Period size: 45 Copynumber: 6.8 Consensus size: 45
14971405 CCCTATGCTG
* *
14971415 AGATGGTAAGCAAATATTATACGAA-T--AAAATAAATATTCCTTA
1 AGATGGTAAACAAATATTATAC-AAGTACAAAAAAAATATTCCTTA
* * * *
14971458 ACATGATAAATAAATATTATACAAGT-C--AAAAAATAATCCTTA
1 AGATGGTAAACAAATATTATACAAGTACAAAAAAAATATTCCTTA
*
14971500 AGATGGTAAAC--A-ATTATACAAGT-C--AAAAAATAATCCTTA
1 AGATGGTAAACAAATATTATACAAGTACAAAAAAAATATTCCTTA
* *
14971539 AGATGGTAAACAAATATTTTACAAGTACAAAAAAAATATTTCTTA
1 AGATGGTAAACAAATATTATACAAGTACAAAAAAAATATTCCTTA
* * * * * * *
14971584 AGATGCTAGACAAATATTATACAAATACTAAAACAATATTTCAT-
1 AGATGGTAAACAAATATTATACAAGTACAAAAAAAATATTCCTTA
* ** * * * * *
14971628 CGACTAATAAACATATATTATACGAA-TAGAAACAAAATATTTCTTC
1 AGA-TGGTAAACAAATATTATAC-AAGTACAAAAAAAATATTCCTTA
* * * *
14971674 ATATGCTAAACAAATATTTTACAAATACTAAAAAAAA
1 AGATGGTAAACAAATATTATACAAGTAC-AAAAAAAA
14971711 AATCATCAGC
Statistics
Matches: 203, Mismatches: 37, Indels: 23
0.77 0.14 0.09
Matches are distributed among these distances:
39 38 0.19
40 1 0.00
41 1 0.00
42 33 0.16
43 20 0.10
44 4 0.02
45 96 0.47
46 10 0.05
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (45 bp):
AGATGGTAAACAAATATTATACAAGTACAAAAAAAATATTCCTTA
Found at i:14971771 original size:86 final size:86
Alignment explanation
Indices: 14971568--14971947 Score: 498
Period size: 86 Copynumber: 4.4 Consensus size: 86
14971558 TACAAGTACA
* * * * * *
14971568 AAAAAAATATTTCTTAAGATGCTAGACAAATATTATACAAATACTAAAACAATATTTCATCGACT
1 AAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAA-AAAATTTCATCAACT
** * *
14971633 AATAAACATATATTATACGAAT
65 GCTAAACAAAAATTATACGAAT
** *
14971655 AGAAACAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAAAATCATCAG
1 --AAA-AAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAATTTCATCAA
14971720 CTGCTAAACAAAAATTATACGAAT
63 CTGCTAAACAAAAATTATACGAAT
*
14971744 AAAAAAATATTTCTTCATATGCTAAACAAATATTTTA-AGAATACTAAAAAAATTTTCATCAACT
1 AAAAAAATATTTCTTCATATGCTAAACAAATATTTTACA-AATACTAAAAAAAATTTCATCAACT
*
14971808 GCTAAACAAAAGA-TATAAGAAT
65 GCTAAACAAAA-ATTATACGAAT
* *
14971830 -AAAAAATATTTCTTTATATGCTAAACAAATATTTTACGAATACTGAAAAAAAATTTCATCAACT
1 AAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACT-AAAAAAAATTTCATCAACT
14971894 GCTAAACAAAAATTATACGAAT
65 GCTAAACAAAAATTATACGAAT
* *
14971916 AAAAAAA-AATTCTTCAAATGCTAAACAAATAT
1 AAAAAAATATTTCTTCATATGCTAAACAAATAT
14971948 GCTAGGAAAA
Statistics
Matches: 259, Mismatches: 25, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
85 43 0.17
86 133 0.51
87 10 0.04
89 31 0.12
90 42 0.16
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (86 bp):
AAAAAAATATTTCTTCATATGCTAAACAAATATTTTACAAATACTAAAAAAAATTTCATCAACTG
CTAAACAAAAATTATACGAAT
Found at i:14971833 original size:41 final size:40
Alignment explanation
Indices: 14971713--14971944 Score: 164
Period size: 41 Copynumber: 5.5 Consensus size: 40
14971703 AAAAAAAAAA
*
14971713 TCATCAGCTGCTAAACAAAAATTATACGAATAAAAAAATATT
1 TCATCAACTGCTAAACAAAAA-TATACGAATAAAAAAAT-TT
* * * *
14971755 TCTTCATA-TGCTAAACAAATATTTTAAGAATACTAAAAAAATTT
1 TCATCA-ACTGCTAAACAAA-AATATACG-A-A-TAAAAAAATTT
*
14971799 TCATCAACTGCTAAACAAAAGATATAAGAAT-AAAAAATATT
1 TCATCAACTGCTAAACAAAA-ATATACGAATAAAAAAAT-TT
* * * * *
14971840 TCTTTATA-TGCTAAACAAATATTTTACGAATACTGAAAAAAAATT
1 TCATCA-ACTGCTAAACAAA-AATATACG-A-A-T-AAAAAAATTT
**
14971885 TCATCAACTGCTAAACAAAAATTATACGAATAAAAAAAAAT
1 TCATCAACTGCTAAACAAAAA-TATACGAATAAAAAAATTT
* *
14971926 TCTTCAAATGCTAAACAAA
1 TCATCAACTGCTAAACAAA
14971945 TATGCTAGGA
Statistics
Matches: 152, Mismatches: 21, Indels: 35
0.73 0.10 0.17
Matches are distributed among these distances:
40 7 0.05
41 48 0.32
42 25 0.16
43 7 0.05
44 28 0.18
45 31 0.20
46 6 0.04
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (40 bp):
TCATCAACTGCTAAACAAAAATATACGAATAAAAAAATTT
Found at i:14971866 original size:171 final size:175
Alignment explanation
Indices: 14971568--14971965 Score: 515
Period size: 171 Copynumber: 2.3 Consensus size: 175
14971558 TACAAGTACA
* * *
14971568 AAAAAAATATTTCTT-AAGATGCTAGACAAATATTATACA-AATACTAAAACAATATTTCATCGA
1 AAAAAAATATTTCTTCAA-ATGCTAAACAAATATTATA-AGAATACTAAAAAAATATTTCATCAA
* * *
14971631 CTAATAAACATATATTATACGAATAGAAACAAAATATTTCTTCATATGCTAAACAAATATTTTAC
64 CTAATAAACATAAAATATAAGAAT--AAACAAAATATTTCTTCATATGCTAAACAAATATTTTAC
*
14971696 AAATACT-AAAAAAAAAATCATCAGCTGCTAAACAAAAATTATACGAAT
127 AAATACTGAAAAAAAAAATCATCAACTGCTAAACAAAAATTATACGAAT
* *
14971744 AAAAAAATATTTCTTCATATGCTAAACAAATATTTTAAGAATACTAAAAAAAT-TTTCATCAACT
1 AAAAAAATATTTCTTCAAATGCTAAACAAATATTATAAGAATACTAAAAAAATATTTCATCAACT
** * *
14971808 GCTAAACA-AAAGATATAAGAAT-AA-AAAATATTTCTTTATATGCTAAACAAATATTTTACGAA
66 AATAAACATAAA-ATATAAGAATAAACAAAATATTTCTTCATATGCTAAACAAATATTTTACAAA
**
14971870 TACTGAAAAAAAATTTCATCAACTGCTAAACAAAAATTATACGAAT
130 TACTGAAAAAAAAAATCATCAACTGCTAAACAAAAATTATACGAAT
* ** * *
14971916 AAAAAAA-AATTCTTCAAATGCTAAACAAATATGCTAGGAAAACTAAAAAA
1 AAAAAAATATTTCTTCAAATGCTAAACAAATATTATAAGAATACTAAAAAA
14971966 TACTAAAGAA
Statistics
Matches: 197, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
171 77 0.39
172 47 0.24
174 2 0.01
175 25 0.13
176 45 0.23
177 1 0.01
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.29
Consensus pattern (175 bp):
AAAAAAATATTTCTTCAAATGCTAAACAAATATTATAAGAATACTAAAAAAATATTTCATCAACT
AATAAACATAAAATATAAGAATAAACAAAATATTTCTTCATATGCTAAACAAATATTTTACAAAT
ACTGAAAAAAAAAATCATCAACTGCTAAACAAAAATTATACGAAT
Found at i:14971897 original size:45 final size:44
Alignment explanation
Indices: 14971545--14971965 Score: 305
Period size: 45 Copynumber: 9.7 Consensus size: 44
14971535 CTTAAGATGG
* * * *
14971545 TAAACAAATATTTTAC-AAGTACAAAAAAAATATTTC-TTAAGATGC
1 TAAACAAATATTATACGAA-TACTAAAAAAA-ATTTCATCAA-CTGC
* * * * **
14971590 TAGACAAATATTATACAAATACTAAAACAATATTTCATCGACTAA
1 TAAACAAATATTATACGAATACTAAAA-AAAATTTCATCAACTGC
* * *
14971635 TAAACATATATTATACGAATA-GAAACAAAATATTTCTTCATA-TGC
1 TAAACAAATATTATACGAATACTAAA-AAAA-ATTTCATCA-ACTGC
* * ** *
14971680 TAAACAAATATTTTACAAATACTAAAAAAAAAATCATCAGCTGC
1 TAAACAAATATTATACGAATACTAAAAAAAATTTCATCAACTGC
* * *
14971724 TAAACAAAAATTATACGAATA--AAAAAATATTTCTTCATA-TGC
1 TAAACAAATATTATACGAATACTAAAAAAAATTTCATCA-ACTGC
* * *
14971766 TAAACAAATATTTTAAGAATACTAAAAAAATTTTCATCAACTGC
1 TAAACAAATATTATACGAATACTAAAAAAAATTTCATCAACTGC
* * * * *
14971810 TAAACAAA-AGATATAAG-A-A-TAAAAAATATTTCTTTATA-TGC
1 TAAACAAATA-TTATACGAATACTAAAAAAAATTTCATCA-ACTGC
*
14971851 TAAACAAATATTTTACGAATACTGAAAAAAAATTTCATCAACTGC
1 TAAACAAATATTATACGAATACT-AAAAAAAATTTCATCAACTGC
* * *
14971896 TAAACAAAAATTATACGAATA--AAAAAAAA-TTCTTCAAATGC
1 TAAACAAATATTATACGAATACTAAAAAAAATTTCATCAACTGC
** * *
14971937 TAAACAAATATGCTAGGAAAACTAAAAAA
1 TAAACAAATATTATACGAATACTAAAAAA
14971966 TACTAAAGAA
Statistics
Matches: 293, Mismatches: 61, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
41 54 0.18
42 45 0.15
43 10 0.03
44 63 0.22
45 111 0.38
46 10 0.03
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (44 bp):
TAAACAAATATTATACGAATACTAAAAAAAATTTCATCAACTGC
Found at i:14973753 original size:56 final size:56
Alignment explanation
Indices: 14973678--14973810 Score: 160
Period size: 56 Copynumber: 2.4 Consensus size: 56
14973668 CATGTCCCAG
* * * **
14973678 CCCGTGT-CTATGCCTGTGTGAATATACTGACTTGGGACACACGGCCAAGCCACATG
1 CCCGTGTGCTAGGCC-GTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
* * *
14973734 CTCGTGTGCTAGGCCGTGTGAGTATACTGACTTAGGTCACACGGCCAAACCACACA
1 CCCGTGTGCTAGGCCGTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
* *
14973790 CCCGTATGCTAGGCCATGTGA
1 CCCGTGTGCTAGGCCGTGTGA
14973811 GCAATTTGAG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
56 59 0.91
57 6 0.09
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.23
Consensus pattern (56 bp):
CCCGTGTGCTAGGCCGTGTGAATATACTGACTTAGGACACACGGCCAAACCACACA
Found at i:14974943 original size:25 final size:25
Alignment explanation
Indices: 14974882--14974944 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
14974872 GCATGTAAAT
* * * *
14974882 GGGAAGCTCTTCTGAGTTATATAAC
1 GGGAAGCTCATGTGAGCTAAATAAC
14974907 GGGAAGCTCATGTGAGCTAAATAAC
1 GGGAAGCTCATGTGAGCTAAATAAC
14974932 GGGAAGCTCATGT
1 GGGAAGCTCATGT
14974945 AAGTTGTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (25 bp):
GGGAAGCTCATGTGAGCTAAATAAC
Found at i:14976665 original size:25 final size:25
Alignment explanation
Indices: 14976631--14976716 Score: 86
Period size: 25 Copynumber: 3.5 Consensus size: 25
14976621 TACCGATTTT
*
14976631 AGCTCTTATGAGCTTACCGATACTC
1 AGCTCGTATGAGCTTACCGATACTC
* *
14976656 AGCTCGTATGAGCTTACCGTTATTC
1 AGCTCGTATGAGCTTACCGATACTC
* * **
14976681 AGCTCAG-AGGAGCTTACCGGTTGT-
1 AGCTC-GTATGAGCTTACCGATACTC
14976705 AGCTCGTATGAG
1 AGCTCGTATGAG
14976717 TATACATGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 1 0.02
24 9 0.18
25 40 0.78
26 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.30
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCGATACTC
Found at i:14977916 original size:56 final size:56
Alignment explanation
Indices: 14977798--14977932 Score: 162
Period size: 56 Copynumber: 2.4 Consensus size: 56
14977788 TTTTAAAGAG
* ** * *
14977798 CACAAGTCAGTATGCTCACACGGTTTAGCACATAGGCTTATGGCTTGGCCATGTGA
1 CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
* * * * *
14977854 CCCAAGTCAGTATACTCACACGGCCTAGCACACGGGCGTATGGCTTGGTCGTGTGT
1 CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
* *
14977910 CACAAGTTAGTATACCCACACGG
1 CACAAGTCAGTATACTCACACGG
14977933 GCACGAACAT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (56 bp):
CACAAGTCAGTATACTCACACGGCCTAGCACACAGGCGTATGGCTTGGCCATGTGA
Found at i:14982011 original size:3 final size:3
Alignment explanation
Indices: 14982003--14982030 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
14981993 GTGGCCATAC
14982003 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
14982031 TACAAGTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:14988172 original size:24 final size:23
Alignment explanation
Indices: 14988126--14988172 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14988116 CCCTAGATAT
* *
14988126 GTTTAATCTCATAATTTGATGGG
1 GTTTAATCTCATAAATTAATGGG
*
14988149 GTTTTATCTCATAAATTAACTGGG
1 GTTTAATCTCATAAATTAA-TGGG
14988173 TTGGAGTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (23 bp):
GTTTAATCTCATAAATTAATGGG
Found at i:14994776 original size:19 final size:19
Alignment explanation
Indices: 14994713--14994786 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
14994703 TAGATGAGTT
14994713 TAAAATTATAAAAAAATTTA
1 TAAAATTAT-AAAAAATTTA
14994733 TAAAA-TATAAAAAATATTA
1 TAAAATTATAAAAAAT-TTA
* **
14994752 -ATAATTATTGAAAATTTA
1 TAAAATTATAAAAAATTTA
*
14994770 TAAAATTTTATAAAAAT
1 TAAAATTATA-AAAAAT
14994787 AAAAAAATGT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
18 13 0.30
19 20 0.47
20 10 0.23
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (19 bp):
TAAAATTATAAAAAATTTA
Found at i:14996115 original size:16 final size:15
Alignment explanation
Indices: 14996089--14996123 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
14996079 TGATGTGAAT
14996089 AATATAAAATATTAA
1 AATATAAAATATTAA
*
14996104 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
14996120 AATA
1 AATA
14996124 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:14996314 original size:25 final size:25
Alignment explanation
Indices: 14996277--14996422 Score: 109
Period size: 25 Copynumber: 5.8 Consensus size: 25
14996267 TGATAATATT
* *
14996277 AAAAATATGTACATAATATAGTGTA
1 AAAAATATATACATAATATAGTATA
*
14996302 AAAAATACATACATAATATA--AT-
1 AAAAATATATACATAATATAGTATA
* * * *
14996324 TAAAATATATACATAAGATAACATGTA
1 AAAAATATATACATAATAT-A-GTATA
* * *
14996351 AATATATATATAAATAATATAGTATT
1 AA-AAATATATACATAATATAGTATA
* * *
14996377 ACAGATATATACATAAAATAGTATA
1 AAAAATATATACATAATATAGTATA
* *
14996402 AAATATATATACGTAATATAG
1 AAAAATATATACATAATATAG
14996423 AATTTAGAAT
Statistics
Matches: 92, Mismatches: 23, Indels: 12
0.72 0.18 0.09
Matches are distributed among these distances:
22 16 0.17
23 2 0.02
25 54 0.59
26 4 0.04
27 2 0.02
28 14 0.15
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAAATATATACATAATATAGTATA
Found at i:14997061 original size:30 final size:30
Alignment explanation
Indices: 14996971--14997066 Score: 156
Period size: 30 Copynumber: 3.2 Consensus size: 30
14996961 TAGGTACAAG
14996971 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
14997001 AGGTAGTGGAGCAAGTGTAGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
14997031 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
14997061 TGGTGG
1 TGGTGG
14997067 CGGCAATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.19, C:0.06, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:14997820 original size:87 final size:86
Alignment explanation
Indices: 14997681--14997977 Score: 269
Period size: 87 Copynumber: 3.4 Consensus size: 86
14997671 GTGATCGTGA
* * * *
14997681 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAGACA-T-TAAAATAGAAATTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-T-TTTTAAAACAGAAATTGTAAAATAGAAATTGA
* ** *
14997744 AAATAACTCAGCACGTGAGTCAAG
64 AAATACCTCAG-ACGTGACCCGAG
* * **
14997768 GCTCAACTCACTTCTCGCAAAATGAGTTGATTTTTAAAACA-AAATTTGTAAAACAGATTTTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAA-TTGTAAAATAGAAATTGAA
* *
14997832 AATACCTCGATATGTGACCCGAG
65 AATACCTC-AGACGTGACCCGAG
* * * * * **
14997855 GCTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAAATCATTAATTG
1 GCTCAACTCACTTCTCGCAATATGAGTTGATT-TTTAAAA-CAGAAATTGTAAAAT-AGAAATTG
*
14997920 AAAATACCTCAG-CGTGCCCCGAG
63 AAAATACCTCAGACGTGACCCGAG
* * *
14997943 ACTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
14997978 TTGAAAAACA
Statistics
Matches: 169, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
84 2 0.01
85 9 0.05
86 2 0.01
87 86 0.51
88 43 0.25
89 10 0.06
90 17 0.10
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.30
Consensus pattern (86 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACAGAAATTGTAAAATAGAAATTGAAA
ATACCTCAGACGTGACCCGAG
Found at i:14997959 original size:88 final size:86
Alignment explanation
Indices: 14997769--14998001 Score: 240
Period size: 88 Copynumber: 2.6 Consensus size: 86
14997759 TGAGTCAAGG
* * *
14997769 CTCAACTCACTTCTCGCAAAATGAGTTGATTTTTAAAACA-AAATTTGTAAAACAGATTTTGAAA
1 CTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACATAAA-TTG-AAAACACATTTTGAAA
* *
14997833 ATACCTCGATATGTGACCCGAGG
64 ATACCTCGATACGTGACCCGAGA
* *
14997856 CTCAACTCATTTCTCGTAATATGAGTTGATTCTTGAAAAGCATAAATTGAAAA-ATCATTAATTG
1 CTCAACTCACTTCTCGCAATATGAGTTGATT-TTGAAAA-CATAAATTGAAAACA-CATT--TTG
* *
14997920 AAAATACCTC-A-GCGTGCCCCGAGA
61 AAAATACCTCGATACGTGACCCGAGA
* *
14997944 CTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACATAAATTGAAAACAC
1 CTCAACTCACTTCTCGCAATATGAGTT-G--ATTTTG-AAAACATAAATTGAAAACAC
14998002 CTCAGCGTGT
Statistics
Matches: 122, Mismatches: 13, Indels: 19
0.79 0.08 0.12
Matches are distributed among these distances:
87 29 0.24
88 46 0.38
89 7 0.06
90 33 0.27
91 7 0.06
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.30
Consensus pattern (86 bp):
CTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACATAAATTGAAAACACATTTTGAAAAT
ACCTCGATACGTGACCCGAGA
Found at i:14998199 original size:76 final size:76
Alignment explanation
Indices: 14997915--14998602 Score: 675
Period size: 76 Copynumber: 9.1 Consensus size: 76
14997905 AAAAATCATT
* * * *
14997915 AATTGAAAATACCTCAGC--GTGCCCCGAGACTCAACTCACCTCTCGCAATATGAGTTGGTTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-GATTTT
*
14997978 TTGAAAAACATA
65 TTGAAAAACAGA
14997990 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
14998055 TGATGAACAGA
66 TGAAAAACAGA
* * *
14998066 AATT-AAAACTACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTT
1 AATTGAAAAC-ACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
14998128 TTGAAAAACAGA
65 TTGAAAAACAGA
* * *
14998140 AGTTGAAAACACCTTAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
14998205 TGACAAACAGA
66 TGAAAAACAGA
* * * *
14998216 AATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
1 AATTG-AAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
14998280 TTGAAAAACAGA
65 TTGAAAAACAGA
*
14998292 AATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
14998351 TGAAAAACATAAATTGAGCAGA
66 TG------A-AAA---A-CAGA
* * * ** *
14998373 AATTGAAAATACCTCAACG-G-GTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
** *
14998436 TG---ATGATA
66 TGAAAAACAGA
* * ** *
14998444 AATTGAAAATACCTCA--ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
14998507 TGAATTAAAATAGA
66 TG-A--AAAACAGA
* ** * *
14998521 AATGGAAAACACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
* *
14998582 TTGAAACACATA
65 TTGAAAAACAGA
*
14998594 AATTAAAAA
1 AATTGAAAA
14998603 AAAATAAATT
Statistics
Matches: 526, Mismatches: 52, Indels: 72
0.81 0.08 0.11
Matches are distributed among these distances:
70 39 0.07
71 60 0.11
73 12 0.02
74 61 0.12
75 79 0.15
76 108 0.21
77 107 0.20
80 2 0.00
81 20 0.04
84 32 0.06
85 6 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (76 bp):
AATTGAAAACACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TGAAAAACAGA
Found at i:14998492 original size:71 final size:74
Alignment explanation
Indices: 14998372--14998582 Score: 270
Period size: 71 Copynumber: 2.9 Consensus size: 74
14998362 AATTGAGCAG
* * *
14998372 AAATTGAAAATACCTCAACGGGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAA-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
14998437 G-A-T-GAT-
65 GAATTAAATA
* *
14998443 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAA-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
14998508 GAATTAAAATA
65 GAATT-AAATA
* * *
14998519 GAAATGGAAAACACCTC-AGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 -AAATTGAAAATACCTCAAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
14998583 TGAAACACAT
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
71 61 0.50
72 1 0.01
73 1 0.01
75 45 0.37
76 1 0.01
77 14 0.11
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (74 bp):
AAATTGAAAATACCTCAAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AATTAAATA
Found at i:14998585 original size:302 final size:297
Alignment explanation
Indices: 14997944--14998602 Score: 791
Period size: 302 Copynumber: 2.2 Consensus size: 297
14997934 TGCCCCGAGA
* *
14997944 CTCAACTCACCTCTCGCAATATGAGTTGGTTTTTTTGAAAAACATAAATTGAAAACACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACACCTCAGCA
*
14998009 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATGAACAGAAATTAAAA
66 TGT----CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAATGAACAGAAATTAAAA
*
14998074 CTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTGAAAAACAG
127 CTACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTGAAAAACAG
* *
14998139 AAGTTGAAAACACCTTAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
192 AAGTTGAAAACACCTCA-CATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
14998204 TTGACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGG
256 TTGAAAAACAGAAATTGAAAAACACCTCAGCGTCTAAG-C-AGG
*
14998248 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAAACACCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACACCTCAGCA
*
14998311 TGT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAA
66 TGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------T-AA-TGAACAGAAA
* * *
14998375 TTGAAAA-TACCTCAACGGGTCTTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG-
121 TT-AAAACTACCTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTGA
** * * ** * *
14998438 ATGATA-AA-TTGAAAATACCTCA-ATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTT
185 AAAACAGAAGTTGAAAACACCTCACATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTT
* * *
14998500 GATTTTTTGAATTAAAATAGAAA-TGGAAAACACCTCAGCGTCT-TG-AGG
250 GATTTTTTG-A--AAAACAGAAATTGAAAAACACCTCAGCGTCTAAGCAGG
* * * *
14998548 TTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACATAAATTAAAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAA
14998603 AAAATAAATT
Statistics
Matches: 309, Mismatches: 30, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
297 38 0.12
300 30 0.10
302 100 0.32
303 2 0.01
304 57 0.18
305 11 0.04
306 4 0.01
307 63 0.20
308 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (297 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACATAAATTGAAAACACCTCAGCA
TGTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAATGAACAGAAATTAAAACTAC
CTCAACGGGTCCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTGAAAAACAGAAGT
TGAAAACACCTCACATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAA
AAACAGAAATTGAAAAACACCTCAGCGTCTAAGCAGG
Found at i:14998738 original size:75 final size:74
Alignment explanation
Indices: 14998611--14998928 Score: 315
Period size: 77 Copynumber: 4.3 Consensus size: 74
14998601 AAAAAATAAA
* ** *
14998611 TTAAAAACAGAATTTGAAAGGACTTC-GACGTGTGGCCCGAGAG-TCAACTCACCTCTCGCAATA
1 TTAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CCCGAG-GCTCAACTCACCTCTCGCAATA
*
14998674 TGAGTTGATTCTT
62 TGAGTTGATTTTT
*
14998687 TTAAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGTAATATGA
1 TTAAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
14998752 GTTGATTTTTT
65 GTTGA-TTTTT
* * * * *
14998763 TGATAAAAATAGAATTTGAAAATATCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 T--TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
14998828 AGTTGA-TTTT
64 AGTTGATTTTT
* * * * * ** * *
14998838 TGACAAACAAAAATTGAAATTACCTCAGC--ATCTTGAGGCTCAACTCACTTCTTGCAATATGAG
1 TTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
14998901 TTGATTTTT
66 TTGATTTTT
* * *
14998910 TT-GAAACATAAATTAAAAA
1 TTAAAAACAGAAATTGAAAA
14998929 AACAAAAATT
Statistics
Matches: 206, Mismatches: 29, Indels: 19
0.81 0.11 0.07
Matches are distributed among these distances:
71 47 0.23
72 5 0.02
73 20 0.10
74 1 0.00
75 38 0.18
76 12 0.06
77 76 0.37
78 7 0.03
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (74 bp):
TTAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:14998813 original size:77 final size:77
Alignment explanation
Indices: 14998654--14998913 Score: 320
Period size: 77 Copynumber: 3.5 Consensus size: 77
14998644 GGCCCGAGAG
* * *
14998654 TCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-A-AAAAGCAGAAATTGAAAATACCTCAGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTCAAC
*
14998717 GTGTCCCGAGGC
66 GTGTCCTGAGGC
* * * *
14998729 TCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGATAAAAATAGAATTTGAAAATATCTCAAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTCAAC
14998794 GTGTCCTGAGGC
66 GTGTCCTGAGGC
* * *
14998806 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG--ACAAACAAAAATTGAAATTACCTC-A-
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTCAAC
** *
14998865 GCATCTTGAGGC
66 GTGTCCTGAGGC
* *
14998877 TCAACTCACTTCTTGCAATATGAGTTGATTTTTTTGA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
14998914 AACATAAATT
Statistics
Matches: 160, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
71 35 0.22
72 1 0.01
73 24 0.15
75 39 0.24
76 1 0.01
77 60 0.38
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (77 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAACAGAAATTGAAAATACCTCAAC
GTGTCCTGAGGC
Found at i:14999130 original size:14 final size:13
Alignment explanation
Indices: 14999100--14999144 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
14999090 GATTTTTAAA
*
14999100 AAAAATAGAAATT
1 AAAAACAGAAATT
*
14999113 AAAAGCAGAAATT
1 AAAAACAGAAATT
14999126 GAAAAACAGAAATT
1 -AAAAACAGAAATT
14999140 AAAAA
1 AAAAA
14999145 TACCTCGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:14999165 original size:102 final size:102
Alignment explanation
Indices: 14998926--14999216 Score: 385
Period size: 102 Copynumber: 2.9 Consensus size: 102
14998916 CATAAATTAA
* *
14998926 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
14998991 GA--TTT-GAAAAGCAGAATTTGTAAGGCAAAAATTG
66 GATTTTTAAAAAAACAGAAATTGAAAAGCAAAAATTG
*
14999025 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
14999090 GATTTTTAAAAAAAATAGAAATT-AAAAGCAGAAATTG
66 GATTTTT-AAAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
14999127 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
14999192 GATTTTT-GAAAAGCATAAATTGAAA
66 GATTTTTAAAAAAACAGAAATTGAAA
14999217 TTACCTCAGC
Statistics
Matches: 168, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
99 64 0.38
100 10 0.06
101 6 0.04
102 78 0.46
103 10 0.06
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.24
Consensus pattern (102 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTAAAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:14999247 original size:73 final size:74
Alignment explanation
Indices: 14999124--14999289 Score: 244
Period size: 73 Copynumber: 2.2 Consensus size: 74
14999114 AAAGCAGAAA
* * * * *
14999124 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14999189 GTTGA-TTT
66 GTTGATTTT
* * *
14999197 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
14999262 GTTGATTTTT
66 GTTGA-TTTT
14999272 TTGAAAAGCATAAATTGA
1 TTGAAAAGCATAAATTGA
14999290 GAAAACGGAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
73 62 0.75
75 21 0.25
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:15009314 original size:16 final size:15
Alignment explanation
Indices: 15009288--15009322 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
15009278 TGATGTGAAT
15009288 AATATAAAATATTAA
1 AATATAAAATATTAA
*
15009303 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
15009319 AATA
1 AATA
15009323 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:15009589 original size:25 final size:25
Alignment explanation
Indices: 15009472--15009684 Score: 110
Period size: 25 Copynumber: 8.9 Consensus size: 25
15009462 TACGTGATAA
* *
15009472 TATTAAAAATATGTACATAATATAG
1 TATTAAAGATATATACATAATATAG
* * *
15009497 T-GTAAAAATACATACATAATATA-
1 TATTAAAGATATATACATAATATAG
* *
15009520 -ATT-AA-ATATATACATAAGATAA
1 TATTAAAGATATATACATAATATAG
* * *
15009542 CATGTAAATATATATATAAATAATATAG
1 TAT-T-AA-AGATATATACATAATATAG
* *
15009570 TATTACAGATATATACATAAAATAG
1 TATTAAAGATATATACATAATATAG
* * *
15009595 TATAAAATATATATACGTAATATAG
1 TATTAAAGATATATACATAATATAG
* * *
15009620 AATT-TAGA-ATATACCT-A-ATA-
1 TATTAAAGATATATACATAATATAG
* *
15009640 TATTAAA-ATAATATATATAATATAA
1 TATTAAAGAT-ATATACATAATATAG
*
15009665 TATT-AAGAAATATA-ATAATA
1 TATTAAAGATATATACATAATA
15009685 ACAAAAAAAG
Statistics
Matches: 144, Mismatches: 29, Indels: 32
0.70 0.14 0.16
Matches are distributed among these distances:
20 4 0.03
21 18 0.12
22 9 0.06
23 17 0.12
24 32 0.22
25 44 0.31
26 2 0.01
27 2 0.01
28 16 0.11
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.35
Consensus pattern (25 bp):
TATTAAAGATATATACATAATATAG
Found at i:15010195 original size:18 final size:18
Alignment explanation
Indices: 15010172--15010225 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
15010162 ACAAGTGGTG
15010172 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
15010190 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
15010202 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
15010220 GTGGAG
1 GTGGAG
15010226 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:15010255 original size:18 final size:17
Alignment explanation
Indices: 15010172--15010255 Score: 53
Period size: 18 Copynumber: 5.4 Consensus size: 17
15010162 ACAAGTGGTG
15010172 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
15010190 GTGGAG---T-AGG-TA
1 GTGGAGCAATGTGGCTA
15010202 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
*
15010220 GTGGAG---T-TGG-TG
1 GTGGAGCAATGTGGCTA
15010232 GTGGAGCAATTGTGGCTA
1 GTGGAGCAA-TGTGGCTA
15010250 GTGGAG
1 GTGGAG
15010256 TTGGTGGCGG
Statistics
Matches: 50, Mismatches: 4, Indels: 24
0.64 0.05 0.31
Matches are distributed among these distances:
12 15 0.30
13 5 0.10
14 2 0.04
16 2 0.04
17 5 0.10
18 21 0.42
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (17 bp):
GTGGAGCAATGTGGCTA
Found at i:15010257 original size:30 final size:30
Alignment explanation
Indices: 15010167--15010262 Score: 165
Period size: 30 Copynumber: 3.2 Consensus size: 30
15010157 TAGGTACAAG
15010167 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
15010197 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
15010227 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
15010257 TGGTGG
1 TGGTGG
15010263 CGGCAAAGGC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:15010999 original size:19 final size:20
Alignment explanation
Indices: 15010962--15011000 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15010952 AAAACAAAGG
15010962 CAGAAAAGAGAGATAGAGAA
1 CAGAAAAGAGAGATAGAGAA
15010982 CAGAAACAGA-AG-TAGAGAA
1 CAGAAA-AGAGAGATAGAGAA
15011001 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 8 0.44
21 3 0.17
ACGTcount: A:0.59, C:0.08, G:0.28, T:0.05
Consensus pattern (20 bp):
CAGAAAAGAGAGATAGAGAA
Found at i:15013982 original size:27 final size:27
Alignment explanation
Indices: 15013952--15014129 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
15013942 ATATTGAGCC
* *
15013952 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
15013979 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15014006 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
15014034 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
15014061 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
15014088 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15014115 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
15014130 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:15014091 original size:82 final size:81
Alignment explanation
Indices: 15013973--15014128 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
15013963 TGCTATATAA
* * * *
15013973 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
15014038 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15014055 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
15014119 CCCTTAGTGC
65 CACTTAGTGC
15014129 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15015431 original size:23 final size:23
Alignment explanation
Indices: 15015371--15015432 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
15015361 GGGGGGTGAG
* *
15015371 ACCATG-TTATTTTTTTTTCATC
1 ACCATGCTTATTATTTTTTAATC
* * *
15015393 ACCCTTCCTT-TCATTTTTTAATC
1 A-CCATGCTTATTATTTTTTAATC
15015416 ACCATGCTTATTATTTT
1 ACCATGCTTATTATTTT
15015433 ATTTTTCTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
22 7 0.24
23 20 0.69
24 2 0.07
ACGTcount: A:0.19, C:0.23, G:0.03, T:0.55
Consensus pattern (23 bp):
ACCATGCTTATTATTTTTTAATC
Found at i:15021955 original size:27 final size:27
Alignment explanation
Indices: 15021925--15022102 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
15021915 ATATTGAGCC
* *
15021925 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
15021952 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15021979 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
15022007 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
15022034 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
15022061 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15022088 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
15022103 GTACAATTTA
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:15022064 original size:82 final size:81
Alignment explanation
Indices: 15021946--15022101 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
15021936 TGCTATATAA
* * * *
15021946 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCA
15022011 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15022028 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
15022092 CCCTTAGTGC
65 CACTTAGTGC
15022102 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15034626 original size:24 final size:24
Alignment explanation
Indices: 15034564--15034627 Score: 60
Period size: 24 Copynumber: 2.7 Consensus size: 24
15034554 GGGGGGTGAG
* *
15034564 ACCATG-TTATTTTTTTTTTCATC
1 ACCATGCTTATTATTTTTTTAATC
* * *
15034587 ACCCTTCCTT-TCATTTTTTTAATC
1 A-CCATGCTTATTATTTTTTTAATC
15034611 ACCATGCTTATTATTTT
1 ACCATGCTTATTATTTT
15034628 ATTTTTCTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
23 7 0.23
24 21 0.70
25 2 0.07
ACGTcount: A:0.19, C:0.22, G:0.03, T:0.56
Consensus pattern (24 bp):
ACCATGCTTATTATTTTTTTAATC
Found at i:15036817 original size:100 final size:100
Alignment explanation
Indices: 15036527--15036817 Score: 289
Period size: 100 Copynumber: 2.9 Consensus size: 100
15036517 AATAACTCCT
* * * * * * * *
15036527 ATATCCCTGGAGTTGCAGTGGAATGGATCAAAACTGCAGTAGCAAATCTCATGTCCATGTAGATG
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
* * ** *
15036592 TAGTGGGGCT-AGATGAAGTTATAAGCTCAAATCCT
66 TAGTGGGG-TAAGATGAAGCTACAAATTCAAATCCC
** * ** * *
15036627 ATATCCCTGAAGATTTAATGGATCAGATTAAAACTTCAGTAGCAGATCTCATC-TCAATGAAGAT
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTC-ATGAAGAT
* * *
15036691 GCAGTGGGGCAAGATGAAGCTACAAATTGAAATCCC
65 GTAGTGGGGTAAGATGAAGCTACAAATTCAAATCCC
* * * *
15036727 GTATCCCTGAAGATGCAGTGGATTGGATTGAAACTACAGTAACAAATCTCATCTTCATAAAGATG
1 ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
* *
15036792 TTGTGGAGTAAGATGAAGCTACAAAT
66 TAGTGGGGTAAGATGAAGCTACAAAT
15036818 CCTAAGTCCC
Statistics
Matches: 151, Mismatches: 37, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
99 1 0.01
100 148 0.98
101 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (100 bp):
ATATCCCTGAAGATGCAGTGGATTGGATTAAAACTACAGTAGCAAATCTCATCTTCATGAAGATG
TAGTGGGGTAAGATGAAGCTACAAATTCAAATCCC
Found at i:15039261 original size:47 final size:47
Alignment explanation
Indices: 15039197--15039319 Score: 219
Period size: 47 Copynumber: 2.6 Consensus size: 47
15039187 ATCCATAAGT
15039197 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
*
15039244 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
* *
15039291 GAACTCGGACTCAACTCAAGGAGTTCGAA
1 GAACTCGGACTCAACTCAACGAGCTCGAA
15039320 ACTCAACCAT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGAATGCCTAGTTACATCTCAC
Found at i:15039552 original size:19 final size:17
Alignment explanation
Indices: 15039513--15039545 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
15039503 ATAATATTTC
15039513 ATCATAATAAATATCAT
1 ATCATAATAAATATCAT
15039530 ATCAT-ATAAATATCAT
1 ATCATAATAAATATCAT
15039546 TAAATCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (17 bp):
ATCATAATAAATATCAT
Found at i:15039774 original size:30 final size:30
Alignment explanation
Indices: 15039739--15039797 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
15039729 CCCCTAGTAC
*
15039739 AAACTTTGACAAAATTACTA-TTTTGCCCCT
1 AAACTTTCACAAAATTAC-ACTTTTGCCCCT
* *
15039769 AAACTTTCACATATTTACACTTTTGCCCC
1 AAACTTTCACAAAATTACACTTTTGCCCC
15039798 AAGGCTCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (30 bp):
AAACTTTCACAAAATTACACTTTTGCCCCT
Found at i:15048606 original size:15 final size:15
Alignment explanation
Indices: 15048586--15048618 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15048576 CTATAATGGC
15048586 AAAAAA-ATGAAGAGT
1 AAAAAAGATGAAGA-T
15048601 AAAAAAGATGAAGAT
1 AAAAAAGATGAAGAT
15048616 AAA
1 AAA
15048619 GACTAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (15 bp):
AAAAAAGATGAAGAT
Found at i:15050558 original size:15 final size:15
Alignment explanation
Indices: 15050538--15050570 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
15050528 CTATAATGGC
15050538 AAAAAA-ATGAAGAGT
1 AAAAAAGATGAAGA-T
15050553 AAAAAAGATGAAGAT
1 AAAAAAGATGAAGAT
15050568 AAA
1 AAA
15050571 GACTAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (15 bp):
AAAAAAGATGAAGAT
Found at i:15055197 original size:7 final size:7
Alignment explanation
Indices: 15055092--15055195 Score: 181
Period size: 7 Copynumber: 14.9 Consensus size: 7
15055082 TTGAAATTTC
15055092 TCAAGAT
1 TCAAGAT
15055099 TCAAGAT
1 TCAAGAT
15055106 TCAAGAT
1 TCAAGAT
15055113 TCAAGAT
1 TCAAGAT
15055120 TCAAGAT
1 TCAAGAT
15055127 TCAAGAT
1 TCAAGAT
15055134 TCAAGAT
1 TCAAGAT
15055141 TCAAGAT
1 TCAAGAT
15055148 TCAAGAT
1 TCAAGAT
15055155 TCAAGAT
1 TCAAGAT
15055162 TCAAGAT
1 TCAAGAT
*
15055169 TCAAGAA
1 TCAAGAT
*
15055176 TCAAGAA
1 TCAAGAT
*
15055183 TCAAGAA
1 TCAAGAT
15055190 TCAAGA
1 TCAAGA
15055196 ATTTATTTTA
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
7 96 1.00
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.25
Consensus pattern (7 bp):
TCAAGAT
Found at i:15057289 original size:16 final size:17
Alignment explanation
Indices: 15057258--15057290 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15057248 GATATGATAC
*
15057258 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
15057275 TAAAA-TATAAAAAAAT
1 TAAAATTATAAAAAAAT
15057291 CAGGGAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:15057579 original size:22 final size:22
Alignment explanation
Indices: 15057569--15057622 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
15057559 TAAAATTACA
15057569 AAATCATATCTTCTAAGATTGC
1 AAATCATATCTTCTAAGATTGC
*
15057591 ATATCATATCTTCTAAGATTGC
1 AAATCATATCTTCTAAGATTGC
15057613 -AATCATATCT
1 AAATCATATCT
15057623 AAGATTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 9 0.30
22 21 0.70
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (22 bp):
AAATCATATCTTCTAAGATTGC
Found at i:15057595 original size:17 final size:19
Alignment explanation
Indices: 15057580--15057671 Score: 122
Period size: 17 Copynumber: 4.9 Consensus size: 19
15057570 AATCATATCT
15057580 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
15057599 TCTTCTAAGATTGCA-ATCATA
1 ---TCTAAGATTGCATATCATA
15057620 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
15057637 TCTAAGATTGCATATC--A
1 TCTAAGATTGCATATCATA
15057654 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
15057672 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 0, Indels: 13
0.83 0.00 0.17
Matches are distributed among these distances:
17 33 0.51
18 10 0.15
19 4 0.06
21 6 0.09
22 12 0.18
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15057820 original size:18 final size:18
Alignment explanation
Indices: 15057787--15057821 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15057777 AACTTGGACT
**
15057787 TTTTTTTTGGGTTTATTA
1 TTTTTTTTGGACTTATTA
15057805 TTTTTTTTGGACTTATT
1 TTTTTTTTGGACTTATT
15057822 TCTGGGCCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.71
Consensus pattern (18 bp):
TTTTTTTTGGACTTATTA
Found at i:15058130 original size:44 final size:45
Alignment explanation
Indices: 15058014--15058299 Score: 351
Period size: 45 Copynumber: 6.4 Consensus size: 45
15058004 GGAAGGCGAT
* * * ** *
15058014 ATCTGCTATCTTTGATCTGTTCCCTATCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
*
15058059 ATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
15058104 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGACACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
15058148 ATCTGTTATCTTCGATCTGCTCTCCTTCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
15058193 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * **
15058237 ATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGAGATACCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
15058282 ATCTGTCATCTTGGATCT
1 ATCTGTTATCTTCGATCT
15058300 ACTTCGATGT
Statistics
Matches: 206, Mismatches: 33, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
44 78 0.38
45 128 0.62
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.32
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:15058142 original size:89 final size:89
Alignment explanation
Indices: 15058040--15058286 Score: 386
Period size: 89 Copynumber: 2.8 Consensus size: 89
15058030 CTGTTCCCTA
* *
15058040 TCTAATACAGAGACGCTAAATCTGTTATCTTCGATCTGCTCCCCGTCTAAAACAGAGACGCCAAA
1 TCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAA
15058105 TCTGCTTCTTCAATCTGCTCCCCG
66 TCTGCTTCTTCAATCTGCTCCCCG
* * * *
15058129 TCTAATACAGAGACACCAAATCTGTTATCTTCGATCTGCTCTCCTTCTAATACAGAGACGCTAAA
1 TCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAA
15058194 TCTGCTTCTTCAATCTGCTCCCCG
66 TCTGCTTCTTCAATCTGCTCCCCG
* * * * **
15058218 TCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGAGATACCAAA
1 TCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAA
15058283 TCTG
66 TCTG
15058287 TCATCTTGGA
Statistics
Matches: 142, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 142 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
TCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAA
TCTGCTTCTTCAATCTGCTCCCCG
Found at i:15058258 original size:134 final size:134
Alignment explanation
Indices: 15058014--15058299 Score: 405
Period size: 134 Copynumber: 2.1 Consensus size: 134
15058004 GGAAGGCGAT
* * * * *
15058014 ATCTGCTATCTTTGATCTGTTCCCTATCTAATACAGAGACGCTAAATCTGTTATCTTCGATCTGC
1 ATCTGTTATCTTCGATCTGCTCCCTATCTAATACAGAGACGCTAAATCTGCTATCTTCAATCTGC
*
15058079 TCCCCGTCTAAAACAGAGACGCCAAATCTGCTTCTTCAATCTGCTCCCCGTCTAATACAGAGACA
66 TCCCCGTCTAAAACAGAGACGCCAAATCTGCTTCTCCAATCTGCTCCCCGTCTAATACAGAGACA
15058144 CCAA
131 CCAA
15058148 ATCTGTTATCTTCGATCTGCTCTCCT-TCTAATACAGAGACGCTAAATCTGCT-TCTTCAATCTG
1 ATCTGTTATCTTCGATCTGCTC-CCTATCTAATACAGAGACGCTAAATCTGCTATCTTCAATCTG
* * * * * *
15058211 CTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCTGTCTAATACAGAGA
65 CTCCCCGTCTAAAACAGAGACGCCAAATCTGCT-TCTCCAATCTGCTCCCCGTCTAATACAGAGA
*
15058276 TACCAA
129 CACCAA
* *
15058282 ATCTGTCATCTTGGATCT
1 ATCTGTTATCTTCGATCT
15058300 ACTTCGATGT
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
133 40 0.30
134 92 0.68
135 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.32
Consensus pattern (134 bp):
ATCTGTTATCTTCGATCTGCTCCCTATCTAATACAGAGACGCTAAATCTGCTATCTTCAATCTGC
TCCCCGTCTAAAACAGAGACGCCAAATCTGCTTCTCCAATCTGCTCCCCGTCTAATACAGAGACA
CCAA
Found at i:15058448 original size:78 final size:78
Alignment explanation
Indices: 15058316--15058844 Score: 794
Period size: 78 Copynumber: 6.8 Consensus size: 78
15058306 ATGTAAACAC
* * * *
15058316 ATGAAGGT-CAGATTTGCTATGTCTTCGATTTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
15058380 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
15058394 ATAAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15058459 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * * *
15058472 ATGAAGGTCTAATCTGTTATGTCTTTGATCTACTCCCTGTCTAATATAGAGATGCCAAATTATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15058537 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
15058550 ATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15058615 TGGATCTGCTTCA
66 TGGATCTGCTTCA
15058628 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
15058693 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * *
15058706 ATGAAGGT-TAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
15058770 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * **
15058784 ATGAAGGT-CAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
15058845 TGTTTCTTCG
Statistics
Matches: 416, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
77 1 0.00
78 413 0.99
79 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:15059196 original size:121 final size:124
Alignment explanation
Indices: 15059025--15059326 Score: 367
Period size: 131 Copynumber: 2.4 Consensus size: 124
15059015 ATCTACTATG
* * * **
15059025 TCTTCGATTTGTTCCCCGTCTAATACAGAGATGGCAAATCATCTTGGATCTCCTTCA-AT-G-AA
1 TCTTCGATTTGTTCTCTGAC-AATACAGAGATGTTAAATCATCTTGGATCTCCTTCACATAGTAA
* * * * * *
15059087 GGTCTAATCTATTATGTCTTTGATCTTCTCTCCGTCGAATATGGAGATGTCAAATCTGTT
65 AGCCAAATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
* *
15059147 TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACA
1 TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTCCTTCA-CAT----A
*
15059212 CGTTAAAGCCAAATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGT
61 -G-TAAAGCCAAATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGT
15059277 T
124 T
* *
15059278 TCTTCGATTTGTTCTCTGGCAATACTGAGATGTTAAATCATCTTGGATC
1 TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATC
15059327 CGCTTTAGCT
Statistics
Matches: 153, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
121 32 0.21
122 17 0.11
123 2 0.01
129 1 0.01
131 101 0.66
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (124 bp):
TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTGGATCTCCTTCACATAGTAAA
GCCAAATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
Found at i:15059245 original size:298 final size:298
Alignment explanation
Indices: 15058708--15059247 Score: 893
Period size: 298 Copynumber: 1.8 Consensus size: 298
15058698 CTGCTTCAAT
* * *
15058708 GAAGGTTAGATCTGCTGTGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* *
15058773 GATCTGCTTCAATGAAGGTCAGATCTGCTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
66 GATCTCCTTCAATGAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
15058838 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
131 CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
* *
15058903 CAGCATAAACACGTGAAAGCTAAATCTGCTATATCTTTGATCTGCTCCTTGTCAACGCAAGGATG
196 CAGCATAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCCTTGTCAACGCAAGGATG
15058968 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
261 CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
* * *
15059006 GAAGGTTAGATCTACTATGTCTTCGATTTGTTCCCCGTCTAATACAGAGATGGCAAATCATCTTG
1 GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* * * *
15059071 GATCTCCTTCAATGAAGGTCTA-ATCTATTATGTCTTTGATCTTCTCTCCGTCGAATATGGAGAT
66 GATCTCCTTCAATGAAGGTC-AGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGAT
* *
15059135 GTCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCT
130 GCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACT
* * *
15059200 TCAGCATAAACACGTTAAAGCCAAATCTGTTATGTCTTCGATCTGCTC
195 TCAGCATAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTC
15059248 TCCGTCGAAT
Statistics
Matches: 222, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
298 221 1.00
299 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (298 bp):
GAAGGTTAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTCCTTCAATGAAGGTCAGATCTACTACGTCTTCGATCTACTCTCCGTCGAATATGGAGATG
CCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTACTT
CAGCATAAACACGTGAAAGCCAAATCTGCTATATCTTCGATCTGCTCCTTGTCAACGCAAGGATG
CCAAATCATCTTGGATCTACTTCGATGTGAAAACATCC
Found at i:15059341 original size:131 final size:131
Alignment explanation
Indices: 15059092--15059343 Score: 414
Period size: 131 Copynumber: 1.9 Consensus size: 131
15059082 ATGAAGGTCT
* * *
15059092 AATCTATTATGTCTTTGATCTTCTCTCCGTCGAATATGGAGATGTCAAATCTGTTTCTTCGATTT
1 AATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
*
15059157 GTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACACGTTAAAGCC
66 GTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACACGTTAAAGCC
15059222 A
131 A
*
15059223 AATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
1 AATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
* * * * *
15059288 GTTCTCTGGCAATACTGAGATGTTAAATCATCTTGGATCCGCTTTAGCTTAAACAC
66 GTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACAC
15059344 CTGAAGGTTA
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 111 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (131 bp):
AATCTATTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTT
GTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACACGTTAAAGCC
A
Found at i:15059357 original size:131 final size:131
Alignment explanation
Indices: 15059083--15059364 Score: 404
Period size: 131 Copynumber: 2.2 Consensus size: 131
15059073 TCTCCTTCAA
* * * *
15059083 TGAAGGTCT-AATCTATTATGTCTTTGATCTTCTCTCCGTCGAATATGGAGATGTCAAATCTGTT
1 TGAAGGT-TAAATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT
*
15059147 TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCTGCTTCAGCATAAACA
65 TCTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACA
*
15059212 CG
130 CC
* * **
15059214 TTAAAGCCAAATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
1 TGAAGGTTAAATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
* * * * *
15059279 CTTCGATTTGTTCTCTGGCAATACTGAGATGTTAAATCATCTTGGATCCGCTTTAGCTTAAACAC
66 CTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACAC
15059344 C
131 C
*
15059345 TGAAGGTTAAATCTGCTATG
1 TGAAGGTTAAATCTGTTATG
15059365 CTTTAGCCTG
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
131 130 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (131 bp):
TGAAGGTTAAATCTGTTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTT
CTTCGATTTGTTCTCTGACAATACAGAGATGTTAAATCATCTTAGATCCGCTTCAGCATAAACAC
C
Found at i:15068172 original size:10 final size:10
Alignment explanation
Indices: 15068157--15068188 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
15068147 TGGGCCTTTT
15068157 TTCCTCGATC
1 TTCCTCGATC
15068167 TTCCTCGATC
1 TTCCTCGATC
15068177 TTCCTCGATC
1 TTCCTCGATC
15068187 TT
1 TT
15068189 TCTTTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.38, G:0.09, T:0.44
Consensus pattern (10 bp):
TTCCTCGATC
Found at i:15069313 original size:47 final size:47
Alignment explanation
Indices: 15069235--15070023 Score: 1231
Period size: 47 Copynumber: 16.7 Consensus size: 47
15069225 CCCTTCGGGA
* * * * * *
15069235 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15069282 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069329 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15069378 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069425 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069474 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15069521 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069568 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069617 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
15069666 CTTATCACATATATACACTTTCACATTCATCACATCGGTGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069713 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15069762 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069905 CTTATCACATATAT--A----CAC-TT--TCACAT-GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15069942 CTTATCACATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15069989 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
15070024 AGAATCCTAA
Statistics
Matches: 696, Mismatches: 25, Indels: 42
0.91 0.03 0.06
Matches are distributed among these distances:
37 25 0.04
38 6 0.01
39 1 0.00
40 2 0.00
41 3 0.00
43 3 0.00
44 2 0.00
45 1 0.00
46 6 0.01
47 368 0.53
49 279 0.40
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15069397 original size:96 final size:95
Alignment explanation
Indices: 15069235--15070023 Score: 1248
Period size: 96 Copynumber: 8.4 Consensus size: 95
15069225 CCCTTCGGGA
* * * * * * * *
15069235 CTTATCACAT-TTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
15069299 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
15069329 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-AATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15069394 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
15069425 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
15069490 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
*
15069521 CTTATCACAT-ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAAATATA
1 CTTATCACATAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT--ATATA
15069585 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
15069617 CTTATCACATAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-AATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
**
15069682 ACTTTCACATTCATCACATCGGTGATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
15069713 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
15069778 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
15069809 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
15069874 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
15069905 CTTATCACAT-ATAT--A----CAC-TT--TCACAT-GGCCATTAGGCCTTATCACATATATACA
1 CTTATCACATAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
*
15069959 CTTTCACATTCATCTCATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
* * *
15069989 CTTATCTCAT-ATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATAATATACACT-TTCACATTCATCACAT
15070024 AGAATCCTAA
Statistics
Matches: 658, Mismatches: 20, Indels: 35
0.92 0.03 0.05
Matches are distributed among these distances:
84 70 0.11
85 6 0.01
86 1 0.00
87 2 0.00
88 3 0.00
90 3 0.00
91 1 0.00
92 1 0.00
93 6 0.01
94 60 0.09
95 2 0.00
96 457 0.69
98 46 0.07
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (95 bp):
CTTATCACATAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15069938 original size:37 final size:38
Alignment explanation
Indices: 15069887--15069967 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 38
15069877 TTCACATTCA
15069887 TCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTT
15069925 TCACAT-GGCCATTAGGCCTTATCACATATATACACTT
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTT
15069962 TCACAT
1 TCACAT
15069968 TCATCTCATC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 37 0.86
38 6 0.14
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (38 bp):
TCACATCGGCCATTAGGCCTTATCACATATATACACTT
Found at i:15069949 original size:84 final size:85
Alignment explanation
Indices: 15069840--15070015 Score: 302
Period size: 84 Copynumber: 2.1 Consensus size: 85
15069830 TTCACATTCA
15069840 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15069905 CTTATCACATATATACACTT
66 CTTATCACATATATACACTT
*
15069925 TCACAT-GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15069989 CTTATCTCATATATGCA-TGT
66 CTTATCACATATATACACT-T
15070009 TCACATC
1 TCACATC
15070016 CATCACATAG
Statistics
Matches: 86, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
83 1 0.01
84 79 0.92
85 6 0.07
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (85 bp):
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACATATATACACTT
Found at i:15075685 original size:22 final size:21
Alignment explanation
Indices: 15075650--15075707 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
15075640 AAAAGATATC
* *
15075650 TACAAATTAAATCTCTAAAAT
1 TACAAATCATATCTCTAAAAT
*
15075671 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAAAT
* *
15075694 TGCATATCATATCT
1 TACAAATCATATCT
15075708 AAGATTGCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:15075742 original size:35 final size:37
Alignment explanation
Indices: 15075679--15075776 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
15075669 ATTACAAAAT
15075679 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
15075715 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
15075750 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
15075777 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:15075784 original size:17 final size:19
Alignment explanation
Indices: 15075686--15075776 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
15075676 AATCATATCT
15075686 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
15075705 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
15075723 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
15075740 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
15075759 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
15075777 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15075928 original size:21 final size:20
Alignment explanation
Indices: 15075891--15075929 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
15075881 GAACTTGGAC
**
15075891 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
15075911 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
15075930 TCTGGGACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:15089918 original size:40 final size:40
Alignment explanation
Indices: 15089859--15090070 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
15089849 CATTTGAATG
* *
15089859 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
15089899 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
15089939 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
15089979 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * *
15090019 AAATTCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
15090059 ATATCC-GGCTAA
1 ATATCCGGGCTAA
15090071 ATTCCGAAGA
Statistics
Matches: 138, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
39 8 0.06
40 128 0.93
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:15089999 original size:80 final size:79
Alignment explanation
Indices: 15089863--15090079 Score: 301
Period size: 80 Copynumber: 2.7 Consensus size: 79
15089853 TGAATGATAT
* *
15089863 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
15089928 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
15089943 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
15090008 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * * *
15090023 TCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
15090080 AAACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.11
80 109 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:15093248 original size:48 final size:48
Alignment explanation
Indices: 15093196--15093510 Score: 524
Period size: 48 Copynumber: 6.6 Consensus size: 48
15093186 TGATCCCGTA
* *
15093196 TAAGACCATGTATGGGACATGGCATCGGAATTGTTATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
15093244 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
15093292 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
*
15093340 TAAGACCATGTCTGGGACATGCCATCGGCATTGTTATGT-AAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAA-CCAGTG
* * *
15093388 TAAGACCATGTCTAGGACATGGCATCGGCATCGTTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
** *
15093436 TAAGACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
*
15093484 TAAGACCATGTTTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
15093511 ACATGAGGCA
Statistics
Matches: 255, Mismatches: 10, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 2 0.01
48 252 0.99
49 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTG
Found at i:15093302 original size:96 final size:96
Alignment explanation
Indices: 15093141--15093510 Score: 524
Period size: 96 Copynumber: 3.9 Consensus size: 96
15093131 ACCATGGCAA
* * * * *
15093141 TATGTGTAACCA-TGTAAGACCATATCT-GGATATGGCATCGGC------ATGTGATCCCGTATA
1 TATGTG-AACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTA
* *
15093198 AGACCATGTATGGGACATGGCATCGGAATTGT
65 AGACCATGTCTGGGACATGGCATCGGCATTGT
15093230 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTAA
15093295 GACCATGTCTGGGACATGGCATCGGCATTGT
66 GACCATGTCTGGGACATGGCATCGGCATTGT
*
15093326 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGCCATCGGCATTGTTATGT-AAGCCAGTGTA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAA-CCAGTGTA
* *
15093390 AGACCATGTCTAGGACATGGCATCGGCATCGT
65 AGACCATGTCTGGGACATGGCATCGGCATTGT
* ** *
15093422 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTAA
*
15093487 GACCATGTTTGGGACATGGCATCG
66 GACCATGTCTGGGACATGGCATCG
15093511 ACATGAGGCA
Statistics
Matches: 254, Mismatches: 17, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
88 5 0.02
89 20 0.08
90 14 0.06
95 2 0.01
96 212 0.83
97 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTAA
GACCATGTCTGGGACATGGCATCGGCATTGT
Found at i:15093394 original size:144 final size:142
Alignment explanation
Indices: 15093141--15093510 Score: 520
Period size: 144 Copynumber: 2.6 Consensus size: 142
15093131 ACCATGGCAA
* * * * *
15093141 TATGTGTAACCA-TGTAAGACCATATCT-GGATATGGCATCGGC----ATGTGATCCCGTATAAG
1 TATGTG-AACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATGTGAACCAGTGTAAG
*
15093200 ACCATGTATGGGACATGGCATCGGAATTGTTATGTGAACCAGTGTAAGACCATGTCTGGGACATG
65 ACCATGTATGGGACATGGCATCGGAATTGTTATGTGAACCAGTGTAAGACCATGTCTAGGACATG
*
15093265 GCATCGGCATTGT
130 GCATCGGCATCGT
15093278 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAACCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-T-TTATGTGAACCAGTGTAA
* * *
15093343 GACCATGTCTGGGACATGCCATCGGCATTGTTATGT-AAGCCAGTGTAAGACCATGTCTAGGACA
64 GACCATGTATGGGACATGGCATCGGAATTGTTATGTGAA-CCAGTGTAAGACCATGTCTAGGACA
15093407 TGGCATCGGCATCGT
128 TGGCATCGGCATCGT
* *
15093422 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGTGAGCCAGTGTAA
1 TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--TTATGTGAACCAGTGTAA
*
15093487 GACCATGTTTGGGACATGGCATCG
64 GACCATGTATGGGACATGGCATCG
15093511 ACATGAGGCA
Statistics
Matches: 208, Mismatches: 15, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
136 5 0.02
137 20 0.10
138 14 0.07
143 3 0.01
144 166 0.80
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (142 bp):
TATGTGAACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTTATGTGAACCAGTGTAAGA
CCATGTATGGGACATGGCATCGGAATTGTTATGTGAACCAGTGTAAGACCATGTCTAGGACATGG
CATCGGCATCGT
Found at i:15097884 original size:25 final size:25
Alignment explanation
Indices: 15097834--15097881 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
15097824 CATAAAGGGG
*
15097834 AAATGAGTTTTTTTTTAAATTTTTA
1 AAATGAGTTTTTTTTCAAATTTTTA
15097859 AAATGA-TTTTTTTTCAAATTTTT
1 AAATGAGTTTTTTTTCAAATTTTT
15097882 TAACTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.60
Consensus pattern (25 bp):
AAATGAGTTTTTTTTCAAATTTTTA
Found at i:15105407 original size:58 final size:58
Alignment explanation
Indices: 15105317--15105430 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 58
15105307 ACCCAAATAT
* *
15105317 ATAACCCTAGACCCAATCTGCTAACCCAAAACCTTAAAACCCAATAACCTGAAGCCCG
1 ATAACCCTAGACCAAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCCCG
15105375 ATAACCCTAGACCAAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCC
1 ATAACCCTAGACCAAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCC
15105431 TAAAGGCCAC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.42, C:0.34, G:0.08, T:0.16
Consensus pattern (58 bp):
ATAACCCTAGACCAAATCTGCTAACACAAAACCTTAAAACCCAATAACCTGAAGCCCG
Found at i:15105934 original size:13 final size:13
Alignment explanation
Indices: 15105916--15105989 Score: 52
Period size: 13 Copynumber: 5.8 Consensus size: 13
15105906 ATTCTAGTTA
15105916 ATATATATATATT
1 ATATATATATATT
*
15105929 ATATATATGTA--
1 ATATATATATATT
15105940 AGTA-ATGAT-TATT
1 A-TATAT-ATATATT
*
15105953 AT-TA-ATATTTT
1 ATATATATATATT
15105964 ATATTATATTATATT
1 ATA-TATA-TATATT
15105979 ATATATATATA
1 ATATATATATA
15105990 ACAAAAGAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 20
0.68 0.04 0.28
Matches are distributed among these distances:
10 2 0.04
11 10 0.21
12 6 0.12
13 17 0.35
14 5 0.10
15 8 0.17
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (13 bp):
ATATATATATATT
Found at i:15106610 original size:29 final size:30
Alignment explanation
Indices: 15106551--15106608 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
15106541 TCCGGGCCTT
* *
15106551 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATATAATTATGAAAAAGTTTA
* *
15106581 GGGGCAAAATTATAATTTTGAAAAAGTT
1 GGGGCAAAAATATAATTATGAAAAAGTT
15106609 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATATAATTATGAAAAAGTTTA
Found at i:15106838 original size:13 final size:13
Alignment explanation
Indices: 15106820--15106851 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15106810 TTTCCAGCAA
15106820 TTATGAATTTATT
1 TTATGAATTTATT
15106833 TTATGAATTTATT
1 TTATGAATTTATT
*
15106846 TGATGA
1 TTATGA
15106852 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:15107059 original size:50 final size:50
Alignment explanation
Indices: 15106946--15107187 Score: 279
Period size: 50 Copynumber: 4.7 Consensus size: 50
15106936 ATTTGGGTAA
* * * *
15106946 AGAGATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
15107002 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15107052 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
15107102 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
** *
15107152 AGAACATCCCATGTAAGACCATGTCTGGGATATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
15107188 TTTGGCATGT
Statistics
Matches: 164, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 28 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 38 0.23
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:15107134 original size:100 final size:103
Alignment explanation
Indices: 15106946--15107195 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 103
15106936 ATTTGGGTAA
*
15106946 AGAGATCCCATGTAAGACCATGTATGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
15107011 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
15107052 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
15107114 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* * *
15107152 AGAACATCCCATGTAAGACCATGTCTGGGATATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
15107196 GTTATTATCA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.39
101 38 0.29
105 2 0.02
106 39 0.30
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:15114965 original size:24 final size:24
Alignment explanation
Indices: 15114933--15114979 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
15114923 ACGAGGTAAT
**
15114933 CCTCGGATCTCTATCCAAAATAAA
1 CCTCGGATCTCTATAAAAAATAAA
15114957 CCTCGGATCTCTATAAAAAATAA
1 CCTCGGATCTCTATAAAAAATAA
15114980 TCGATAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (24 bp):
CCTCGGATCTCTATAAAAAATAAA
Found at i:15116956 original size:49 final size:50
Alignment explanation
Indices: 15116889--15117135 Score: 273
Period size: 49 Copynumber: 5.0 Consensus size: 50
15116879 AGCTATTGTG
* *
15116889 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * ** * *
15116939 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
15116989 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
15117039 AGGTCACGTGTGTAGCACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
15117089 -GGTCGCATGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
15117136 CTTCGGCTAC
Statistics
Matches: 160, Mismatches: 35, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 77 0.48
50 46 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:15120331 original size:49 final size:50
Alignment explanation
Indices: 15120251--15120497 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
15120241 AGCTATTATG
* * *
15120251 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
15120301 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
15120351 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
15120401 AGGTCACGTGTGTAGCACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
15120451 -GGTCGCATGTGTAGTACTAACTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
15120498 CTTCGGCTAC
Statistics
Matches: 163, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 47 0.29
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:15120388 original size:28 final size:27
Alignment explanation
Indices: 15120356--15120439 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
15120346 AACTTCGATC
15120356 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAG-ACTAAGTGCAGGCTACT
* * *
15120384 ACGTGTATCAGA-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGACTAAGTGCAGGCTACT
15120406 ACGTGTGTAGCACTAAGTGCAGGCTACT
1 ACGTGTGTAG-ACTAAGTGCAGGCTACT
15120434 ACGTGT
1 ACGTGT
15120440 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (27 bp):
ACGTGTGTAGACTAAGTGCAGGCTACT
Found at i:15125007 original size:20 final size:21
Alignment explanation
Indices: 15124982--15125021 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
15124972 CTCTTGAAAC
15124982 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
15125002 AGGGCAACATGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
15125022 CCACTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Done.