Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 54 of 320
Found at i:15712808 original size:26 final size:26
Alignment explanation
Indices: 15712772--15712881 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
15712762 TGATACAAAT
15712772 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
15712798 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
15712824 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
15712850 TGATAGTGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
15712876 TGATAA
1 TGATAA
15712882 GAATTTCATG
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 76 0.97
27 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:15714390 original size:26 final size:26
Alignment explanation
Indices: 15714324--15714399 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
15714314 GAAAGTAGCT
* * *
15714324 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
15714352 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
* *
15714378 AAATTACCATTATACCCGTAGG
1 AAATTACTATTATACCCCTAGG
15714400 GTTAATTTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.54
27 1 0.02
28 18 0.44
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:15714543 original size:27 final size:27
Alignment explanation
Indices: 15714502--15714614 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
15714492 GAGGAAGCGT
*
15714502 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15714529 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15714556 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15714584 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15714610 TCTGG
1 TCTGG
15714615 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15714607 original size:54 final size:54
Alignment explanation
Indices: 15714500--15714614 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
15714490 TGGAGGAAGC
*
15714500 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
15714554 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
15714608 GTTCTGG
1 GTTCTGG
15714615 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:15714700 original size:19 final size:22
Alignment explanation
Indices: 15714676--15714715 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
15714666 CTCCCCACAC
15714676 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
15714695 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
15714716 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:15731332 original size:13 final size:13
Alignment explanation
Indices: 15731314--15731338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15731304 TTACTTTAGT
15731314 TATAATATAATAA
1 TATAATATAATAA
15731327 TATAATATAATA
1 TATAATATAATA
15731339 TTTTCTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:15733898 original size:16 final size:16
Alignment explanation
Indices: 15733873--15733905 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15733863 ACTAGATCGG
15733873 CGAAAAGTCGAAAAGC
1 CGAAAAGTCGAAAAGC
*
15733889 CGAAATGTCGAAAAGC
1 CGAAAAGTCGAAAAGC
15733905 C
1 C
15733906 AGCATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.09
Consensus pattern (16 bp):
CGAAAAGTCGAAAAGC
Found at i:15740784 original size:31 final size:32
Alignment explanation
Indices: 15740731--15740790 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
15740721 CACATAACAA
15740731 TAATCATTCAAAGAAATATCAATT-TCATAAG
1 TAATCATTCAAAGAAATATCAATTCTCATAAG
* *
15740762 TAATCATTCAAA-ATACTTTCAATTCTCAT
1 TAATCATTCAAAGA-AATATCAATTCTCAT
15740791 CTCTTACTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 1 0.04
31 20 0.80
32 4 0.16
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (32 bp):
TAATCATTCAAAGAAATATCAATTCTCATAAG
Found at i:15744859 original size:44 final size:44
Alignment explanation
Indices: 15744763--15744851 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
15744753 CTCCATTTGA
15744763 CCCTTCTTTCTCATAGCTTTCACTGAGGAAGAAAGGTTCATGTT
1 CCCTTCTTTCTCATAGCTTTCACTGAGGAAGAAAGGTTCATGTT
15744807 CCCTTCTTTCTCATAGCTTTCACTGAGGAAGAAAGGTTCATGTT
1 CCCTTCTTTCTCATAGCTTTCACTGAGGAAGAAAGGTTCATGTT
15744851 C
1 C
15744852 TTTTCTTTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (44 bp):
CCCTTCTTTCTCATAGCTTTCACTGAGGAAGAAAGGTTCATGTT
Found at i:15755607 original size:31 final size:32
Alignment explanation
Indices: 15755569--15755629 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
15755559 TGGAATAAAC
* * *
15755569 TATATATAT-AATAAGTTTGAAAGGAAATACG
1 TATATATATGAATAAATTTAAAAGAAAATACG
15755600 TATATATATGAATAAATTTAAAAGAAAATA
1 TATATATATGAATAAATTTAAAAGAAAATA
15755630 TAGCCATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 9 0.35
32 17 0.65
ACGTcount: A:0.54, C:0.02, G:0.11, T:0.33
Consensus pattern (32 bp):
TATATATATGAATAAATTTAAAAGAAAATACG
Found at i:15755757 original size:23 final size:21
Alignment explanation
Indices: 15755718--15755762 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
15755708 ACAATTAAAC
*
15755718 AAAAAAAATCAAATGAAAGTAA
1 AAAAAAAACCAAATGAAA-TAA
*
15755740 AAAAAAAACCAATTTGAAATAA
1 AAAAAAAACCAA-ATGAAATAA
15755762 A
1 A
15755763 GTAAAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.16
Consensus pattern (21 bp):
AAAAAAAACCAAATGAAATAA
Found at i:15758033 original size:3 final size:3
Alignment explanation
Indices: 15758025--15758066 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
15758015 CTAGGCTTTG
*
15758025 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
15758067 TCTTTGAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15759608 original size:46 final size:46
Alignment explanation
Indices: 15759539--15759709 Score: 288
Period size: 46 Copynumber: 3.7 Consensus size: 46
15759529 GTGGTATGTG
*
15759539 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
*
15759585 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
* * **
15759631 AGCTAGTGTAAGACATGCCTGGGACATGCATCGGCCATGTTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
15759677 AGCCAGTGTAAGACATGTCTGGGACATGCATCG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCG
15759710 TCATTGAAAC
Statistics
Matches: 116, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 116 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAA
Found at i:15759727 original size:92 final size:91
Alignment explanation
Indices: 15759538--15759754 Score: 294
Period size: 92 Copynumber: 2.4 Consensus size: 91
15759528 GGTGGTATGT
* *
15759538 GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACATGT
*
15759603 CTGGGACATGCATTGGCCACATTATGA
66 CTGGGACATGCATT-GCCACATTACGA
* * **
15759630 AAGCTAGTGTAAGACATGCCTGGGACATGCATCGGCCATGTTATGAAAGCCAGTGTAAGACATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACATGT
**
15759695 CTGGGACATGCA-T-CGTCATTGAAACGA
66 CTGGGACATGCATTGCCACATT---ACGA
*
15759722 GAGCTAGTGTAAGACATGTCTGGGACATACATC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC
15759755 AGCCTCGAGA
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
89 5 0.05
91 1 0.01
92 104 0.95
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (91 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGCCAGTGTAAGACATGT
CTGGGACATGCATTGCCACATTACGA
Found at i:15759731 original size:46 final size:44
Alignment explanation
Indices: 15759539--15759754 Score: 254
Period size: 46 Copynumber: 4.7 Consensus size: 44
15759529 GTGGTATGTG
*
15759539 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGG--ACATTATGAA
*
15759585 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGG--ACATTATGAA
* * *
15759631 AGCTAGTGTAAGACATGCCTGGGACATGCATCGGCCATGTTATGAA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACA--TTATGAA
* * *
15759677 AGCCAGTGTAAGACATGTCTGGGACATGCATC-GTCATTGAAACGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACATT---ATGAA
* *
15759723 AGCTAGTGTAAGACATGTCTGGGACATACATC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC
15759755 AGCCTCGAGA
Statistics
Matches: 152, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 3 0.02
46 145 0.95
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (44 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACATTATGAA
Found at i:15759920 original size:49 final size:49
Alignment explanation
Indices: 15759823--15759938 Score: 135
Period size: 49 Copynumber: 2.4 Consensus size: 49
15759813 TTTGTAAGTT
* * *
15759823 TAAGACCTGTCTGGGACATGGCATAGACACCGATAGATGAGAGCCAGTG
1 TAAGACCTGTCTGGGACATGGCATAGACACCAATAGATAAAAGCCAGTG
* * * * *
15759872 TAAGACCTGTCTAGGACATGGCATCGGC-CTCAATATATAAAAGTCAGTG
1 TAAGACCTGTCTGGGACATGGCATAGACAC-CAATAGATAAAAGCCAGTG
*
15759921 TAAAACCTGTCTGGGACA
1 TAAGACCTGTCTGGGACA
15759939 CGTCATCGAC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 55 0.98
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (49 bp):
TAAGACCTGTCTGGGACATGGCATAGACACCAATAGATAAAAGCCAGTG
Found at i:15762940 original size:17 final size:17
Alignment explanation
Indices: 15762915--15762949 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15762905 CTTTAGATAT
* *
15762915 GAATTGTTCTAATTTTG
1 GAATGGTTCTAAATTTG
15762932 GAATGGTTCTAAATTTG
1 GAATGGTTCTAAATTTG
15762949 G
1 G
15762950 TGCAAATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.46
Consensus pattern (17 bp):
GAATGGTTCTAAATTTG
Found at i:15764063 original size:21 final size:21
Alignment explanation
Indices: 15764039--15764102 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
15764029 TTTATTATAT
15764039 TAGACCAAGTTTAATTTAAAC
1 TAGACCAAGTTTAATTTAAAC
**** * *
15764060 TAGATTTTG-TT-A-TTATAT
1 TAGACCAAGTTTAATTTAAAC
15764078 TAGACCAAGTTTAATTTAAAC
1 TAGACCAAGTTTAATTTAAAC
15764099 TAGA
1 TAGA
15764103 TATTATGTTT
Statistics
Matches: 28, Mismatches: 12, Indels: 6
0.61 0.26 0.13
Matches are distributed among these distances:
18 9 0.32
19 3 0.11
20 3 0.11
21 13 0.46
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (21 bp):
TAGACCAAGTTTAATTTAAAC
Found at i:15765299 original size:49 final size:49
Alignment explanation
Indices: 15765227--15765325 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
15765217 GCAATAAGGA
15765227 TTGGAAAGTGAAGTTTAGGCATATCCTGCGAGGAAGTGACAAGGTAGCT
1 TTGGAAAGTGAAGTTTAGGCATATCCTGCGAGGAAGTGACAAGGTAGCT
15765276 TTGGAAAGTGAAGTTTAGGCATATCCTGCGAGGAAGTGACAAGGTAGCT
1 TTGGAAAGTGAAGTTTAGGCATATCCTGCGAGGAAGTGACAAGGTAGCT
15765325 T
1 T
15765326 ACTGTTTGGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.25
Consensus pattern (49 bp):
TTGGAAAGTGAAGTTTAGGCATATCCTGCGAGGAAGTGACAAGGTAGCT
Found at i:15766013 original size:19 final size:19
Alignment explanation
Indices: 15765991--15766028 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
15765981 TTATACATTA
15765991 TTAATACAATTATTGATAT
1 TTAATACAATTATTGATAT
15766010 TTAATACAATTATTGATAT
1 TTAATACAATTATTGATAT
15766029 AACATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAATACAATTATTGATAT
Found at i:15766366 original size:22 final size:22
Alignment explanation
Indices: 15766323--15766377 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
15766313 AACAATTTAT
* *
15766323 ATATTTTATTATTTATT-TTAAA
1 ATATTTTA-AATTTATTATAAAA
15766345 ATATTTTAAATTTGATTATAAAA
1 ATATTTTAAATTT-ATTATAAAA
15766368 ATGATTTTAA
1 AT-ATTTTAA
15766378 TAATTTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 4 0.14
22 11 0.39
23 6 0.21
24 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (22 bp):
ATATTTTAAATTTATTATAAAA
Found at i:15766436 original size:2 final size:2
Alignment explanation
Indices: 15766429--15766474 Score: 67
Period size: 2 Copynumber: 23.0 Consensus size: 2
15766419 TTACAGTTTA
*
15766429 AT AT AT AT AC AT AT AT AT AT -T CAT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
15766471 AT AT
1 AT AT
15766475 CGGTATTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 1 0.03
2 38 0.95
3 1 0.03
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15767097 original size:16 final size:16
Alignment explanation
Indices: 15767076--15767140 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
15767066 TCAAATTTCT
15767076 TTAAAAAAATAAAATA
1 TTAAAAAAATAAAATA
* * *
15767092 TTAAAATACTCAAATA
1 TTAAAAAAATAAAATA
**
15767108 TTCTAAAATTATAATAA-A
1 -T-TAAAAAAATAA-AATA
15767126 TTAAAAAAATAAAAT
1 TTAAAAAAATAAAAT
15767141 GTACATTATA
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
15 2 0.05
16 22 0.59
17 2 0.05
18 9 0.24
19 2 0.05
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.31
Consensus pattern (16 bp):
TTAAAAAAATAAAATA
Found at i:15768603 original size:54 final size:54
Alignment explanation
Indices: 15768544--15768712 Score: 207
Period size: 54 Copynumber: 3.1 Consensus size: 54
15768534 GAAGCTCGGC
*
15768544 ATGAAGCTCATCATGC-AGAAGA-AAAAGTTGCAGATGCGATGGAGCATGGAAGAG
1 ATGAAGCTCATCATGCGA-AAGATGAAA-TTGCAGATGCGATGGAGCATGGAAGAG
* * * * * *
15768598 GTGAAGCTCATCATACGAAAGATGAAACTGCAGATGCAATGCAGCATAGAAGAG
1 ATGAAGCTCATCATGCGAAAGATGAAATTGCAGATGCGATGGAGCATGGAAGAG
* * *
15768652 ATGAAGCCCATCATGCGAAAGATGAAATTGCAGATGCGAAGGAGCATGGAACAG
1 ATGAAGCTCATCATGCGAAAGATGAAATTGCAGATGCGATGGAGCATGGAAGAG
*
15768706 ATAAAGC
1 ATGAAGC
15768713 AGCAGATACA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
54 92 0.96
55 4 0.04
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.16
Consensus pattern (54 bp):
ATGAAGCTCATCATGCGAAAGATGAAATTGCAGATGCGATGGAGCATGGAAGAG
Found at i:15769121 original size:39 final size:39
Alignment explanation
Indices: 15769067--15769146 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
15769057 CATATGCATC
*
15769067 TGGTGATAAGATCATGAGTGAAGATTTTATGGCTAAGTT
1 TGGTGATAAGATCATGAGTGAAGATGTTATGGCTAAGTT
*
15769106 TGGTGATAAGATCATGGGTGAAGATGTTATGGCTAAGTT
1 TGGTGATAAGATCATGAGTGAAGATGTTATGGCTAAGTT
15769145 TG
1 TG
15769147 AGGCTTTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.29, C:0.05, G:0.31, T:0.35
Consensus pattern (39 bp):
TGGTGATAAGATCATGAGTGAAGATGTTATGGCTAAGTT
Found at i:15769409 original size:180 final size:177
Alignment explanation
Indices: 15769106--15769431 Score: 474
Period size: 180 Copynumber: 1.8 Consensus size: 177
15769096 TGGCTAAGTT
* * *
15769106 TGGTGATAAGATCATGGGTGAAGATGTTATGGCTAAGTTTGAGGCTTTGACAGAGAAGGCTTCCC
1 TGGTGATAAGATCACGAGTGAAGATGTTATAGCTAAGTTTGAGGCTTTGACAGAGAAGGCTTCCC
* ** * * *
15769171 ATATTATAGCTGATGGTGTAGCTAGGATCCTTAAAGGTAAGGCTGCAGAATCAATCTCGCGTGGA
66 ATATTATAGCTAATAATGTAGCTAGGATCATTAAAGATAAGGCTGCAGAATCAATCTCGCATGG-
15769236 AGAAATGAAGTTTCCCATGTCTATAATGAGGTAGAGGAAACATATGTATC
130 AG--ATGAAGTTTCCCATGTCTATAATGAGGTAGAGGAAACATATGTATC
* *
15769286 TGGTGATAAGATCACGAGTGAAGATGTTATAGCTAAGTTTGAGGCTTTGACAGAGACGG-TGTGC
1 TGGTGATAAGATCACGAGTGAAGATGTTATAGCTAAGTTTGAGGCTTTGACAGAGAAGGCT-TCC
* * *
15769350 CATGTTATAGCTAATAATGTAGCTAGGATTATTAAAGATAAGGCTGCAGAATTAATCTCGCATGG
65 CATATTATAGCTAATAATGTAGCTAGGATCATTAAAGATAAGGCTGCAGAATCAATCTCGCATGG
*
15769415 AGATGAAGTTTCGCATG
130 AGATGAAGTTTCCCATG
15769432 CCACATATGC
Statistics
Matches: 130, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
177 14 0.11
179 3 0.02
180 113 0.87
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (177 bp):
TGGTGATAAGATCACGAGTGAAGATGTTATAGCTAAGTTTGAGGCTTTGACAGAGAAGGCTTCCC
ATATTATAGCTAATAATGTAGCTAGGATCATTAAAGATAAGGCTGCAGAATCAATCTCGCATGGA
GATGAAGTTTCCCATGTCTATAATGAGGTAGAGGAAACATATGTATC
Found at i:15770907 original size:31 final size:29
Alignment explanation
Indices: 15770864--15770953 Score: 81
Period size: 30 Copynumber: 3.0 Consensus size: 29
15770854 AATCTTAAAA
* *
15770864 TTATCTATAAATTATGGTTTAATATGCAATT
1 TTATATATAAATTATGATTT--TATGCAATT
* *
15770895 TTATATATAAATTTTGATTTTATGTAATT
1 TTATATATAAATTATGATTTTATGCAATT
* * * *
15770924 TTATACATTAAATTTTGATTTGATCCAATT
1 TTATATA-TAAATTATGATTTTATGCAATT
15770954 CTTGTAAATT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
29 14 0.28
30 19 0.38
31 17 0.34
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.52
Consensus pattern (29 bp):
TTATATATAAATTATGATTTTATGCAATT
Found at i:15770918 original size:29 final size:30
Alignment explanation
Indices: 15770886--15770953 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
15770876 TATGGTTTAA
*
15770886 TATGCAATTTTATATA-TAAATTTTGATTT
1 TATGCAATTTTATACATTAAATTTTGATTT
*
15770915 TATGTAATTTTATACATTAAATTTTGATTT
1 TATGCAATTTTATACATTAAATTTTGATTT
* *
15770945 GATCCAATT
1 TATGCAATT
15770954 CTTGTAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (30 bp):
TATGCAATTTTATACATTAAATTTTGATTT
Found at i:15780724 original size:19 final size:18
Alignment explanation
Indices: 15780696--15780745 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
15780686 GTTAAAATAT
*
15780696 ATTAAATTATTATTAATTG
1 ATTAATTTATTATTAA-TG
15780715 ATTAATTTATTATT-ATG
1 ATTAATTTATTATTAATG
15780732 ATT--TTTATTATTAA
1 ATTAATTTATTATTAA
15780746 ATTAATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.31
16 1 0.03
17 5 0.17
18 1 0.03
19 13 0.45
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
ATTAATTTATTATTAATG
Found at i:15781316 original size:18 final size:19
Alignment explanation
Indices: 15781280--15781323 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
15781270 ATGAGGTACG
*
15781280 CTGTGTACTGATACTGTTA
1 CTGTGTACTGATACCGTTA
*
15781299 CTGT-TACTGTTACCGTTA
1 CTGTGTACTGATACCGTTA
*
15781317 CAGTGTA
1 CTGTGTA
15781324 TTCCGACTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (19 bp):
CTGTGTACTGATACCGTTA
Found at i:15782491 original size:12 final size:12
Alignment explanation
Indices: 15782476--15782500 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15782466 AAGAAAATTT
15782476 AAAAATTTTATA
1 AAAAATTTTATA
15782488 AAAAATTTTATA
1 AAAAATTTTATA
15782500 A
1 A
15782501 GCTTCCGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAAATTTTATA
Found at i:15782656 original size:55 final size:57
Alignment explanation
Indices: 15782590--15782705 Score: 184
Period size: 57 Copynumber: 2.1 Consensus size: 57
15782580 TTATGAACTG
15782590 AATTGTATTTC-TCTCTATTAATTGCAATCGAAATGTAGTGACC-GATAATA-TTCGT
1 AATTGTATTTCTTCTCTATTAATTGCAATCGAAATGTAGTGACCAG-TAATACTTCGT
*
15782645 AATTGTATTTCTTTCTCTATTAATTGCAATCGAACTGTAGTGACCAGTAATACTTCGT
1 AATTGTATTTC-TTCTCTATTAATTGCAATCGAAATGTAGTGACCAGTAATACTTCGT
15782703 AAT
1 AAT
15782706 CCTGTTCCGA
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
55 11 0.20
57 36 0.64
58 9 0.16
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (57 bp):
AATTGTATTTCTTCTCTATTAATTGCAATCGAAATGTAGTGACCAGTAATACTTCGT
Found at i:15783826 original size:23 final size:21
Alignment explanation
Indices: 15783793--15783835 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
15783783 TTGAAAATTT
* *
15783793 TAAAAATAAATTTTTGAAAAA
1 TAAAAATAAATATGTGAAAAA
15783814 TAAAAATTAAAATATGTGAAAA
1 TAAAAA-T-AAATATGTGAAAA
15783836 TTATAAAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
TAAAAATAAATATGTGAAAAA
Found at i:15804432 original size:28 final size:28
Alignment explanation
Indices: 15804392--15804451 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
15804382 AACAAGTGGA
*
15804392 GAATACTATTCCTAGACAATCTTGACTT
1 GAATACTATTCCTACACAATCTTGACTT
15804420 GAATACTATTCCTACACAATCTTGACTT
1 GAATACTATTCCTACACAATCTTGACTT
15804448 GAAT
1 GAAT
15804452 CTCTCCATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (28 bp):
GAATACTATTCCTACACAATCTTGACTT
Found at i:15806656 original size:6 final size:6
Alignment explanation
Indices: 15806645--15806688 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
15806635 ATTTACCCTT
* *
15806645 TTTTTA TTTTTA TTTTAATA TTTTTA TTTTTA ATTTAA TTTTTA
1 TTTTTA TTTTTA TTTT--TA TTTTTA TTTTTA TTTTTA TTTTTA
15806689 CATTCTAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 26 0.81
8 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:15806670 original size:20 final size:19
Alignment explanation
Indices: 15806644--15806687 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
15806634 AATTTACCCT
*
15806644 TTTTTTATTTTTATTTTAA
1 TTTTTTATTTTTAATTTAA
15806663 TATTTTTATTTTTAATTTAA
1 T-TTTTTATTTTTAATTTAA
15806683 TTTTT
1 TTTTT
15806688 ACATTCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTATTTTTAATTTAA
Found at i:15806687 original size:13 final size:14
Alignment explanation
Indices: 15806670--15806701 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15806660 TAATATTTTT
15806670 ATTTTTA-ATT-TA
1 ATTTTTACATTCTA
15806682 ATTTTTACATTCTA
1 ATTTTTACATTCTA
15806696 ATTTTT
1 ATTTTT
15806702 TCTTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 3 0.17
14 8 0.44
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTTACATTCTA
Found at i:15808561 original size:13 final size:13
Alignment explanation
Indices: 15808543--15808567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15808533 GTAAGTGATT
15808543 TTGATGATTTTTC
1 TTGATGATTTTTC
15808556 TTGATGATTTTT
1 TTGATGATTTTT
15808568 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:15809424 original size:46 final size:46
Alignment explanation
Indices: 15809276--15809534 Score: 235
Period size: 46 Copynumber: 5.5 Consensus size: 46
15809266 ATTGTGTGCT
* *
15809276 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGAGAGCC
* * * *
15809322 AGTGTAAGACCATGTCTGGGACATGACATCAGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATGAGAGCC
15809370 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
15809416 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGAGAGCC
* ** * * *
15809460 AGTGTAAGACCATGTCTGTGACATTGCATTAGCAC-GGATATCTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGGC-CTCGAGA--TGAGAGCC
15809510 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
15809535 GGATCGACTT
Statistics
Matches: 178, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.06
45 14 0.08
46 70 0.39
47 32 0.18
48 24 0.13
49 3 0.02
50 24 0.13
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:15809506 original size:140 final size:141
Alignment explanation
Indices: 15809276--15809534 Score: 366
Period size: 140 Copynumber: 1.8 Consensus size: 141
15809266 ATTGTGTGCT
**
15809276 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTACGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATACGACGAGAGCCAGTGTAAGACCATGTCTGG
**
15809341 GACATGACATCAGCATTGAGATGAGAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCG
66 GACATGACATCAGCACGGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCG
15809405 AGATGTAAGCC
131 AGATGTAAGCC
* *
15809416 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGA-GATGTGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATACGACGA-GAGCCAGTGTAAGACCATGTCTG
* * *
15809478 TGACATTG-CATTAGCACGGATATCTGAGAGCTAGTGTAAGACCATGTCTGGGACATG
65 GGACA-TGACATCAGCACGGAGA--TGAGAGCTAGTGTAAGACCATGTCTGGGACATG
15809535 GGATCGACTT
Statistics
Matches: 105, Mismatches: 9, Indels: 9
0.85 0.07 0.07
Matches are distributed among these distances:
137 2 0.02
138 38 0.36
139 3 0.03
140 47 0.45
141 15 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATACGACGAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCAGCACGGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCG
AGATGTAAGCC
Found at i:15812653 original size:93 final size:93
Alignment explanation
Indices: 15812541--15812712 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
15812531 GCCCATAAGT
* *
15812541 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
15812606 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
15812634 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
15812699 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
15812713 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:15812708 original size:46 final size:46
Alignment explanation
Indices: 15812533--15812708 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
15812523 TGTAACCCGC
* * *
15812533 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
15812579 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
15812629 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
15812672 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
15812709 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.59
47 27 0.25
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:15813793 original size:160 final size:160
Alignment explanation
Indices: 15813525--15813837 Score: 617
Period size: 160 Copynumber: 2.0 Consensus size: 160
15813515 ATTAAAAATG
15813525 AGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGCCATGGTTTCTCCTTGC
1 AGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGCCATGGTTTCTCCTTGC
*
15813590 TATATTCGGCCATGGGGTTGAAGATGAGCAAAATTGGCTTTTAATTTTGTATTTTAATTCATTTT
66 TATATTCGGCCATGGGGTTGAAGATGAGCAAAATTGACTTTTAATTTTGTATTTTAATTCATTTT
15813655 ACCCCTAAATGACCAAAATGCCCCTAAACT
131 ACCCCTAAATGACCAAAATGCCCCTAAACT
15813685 AGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGCCATGGTTTCTCCTTGC
1 AGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGCCATGGTTTCTCCTTGC
15813750 TATATTCGGCCATGGGGTTGAAGATGAGCAAAATTGACTTTTAATTTTGTATTTTAATTCATTTT
66 TATATTCGGCCATGGGGTTGAAGATGAGCAAAATTGACTTTTAATTTTGTATTTTAATTCATTTT
15813815 ACCCCTAAATGACCAAAATGCCC
131 ACCCCTAAATGACCAAAATGCCC
15813838 TTACTACTAA
Statistics
Matches: 152, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
160 152 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (160 bp):
AGGCTAGAACGGACTTACAATCGAGCTTGGAAGCTTGAAAAACCCTAGCCATGGTTTCTCCTTGC
TATATTCGGCCATGGGGTTGAAGATGAGCAAAATTGACTTTTAATTTTGTATTTTAATTCATTTT
ACCCCTAAATGACCAAAATGCCCCTAAACT
Found at i:15822901 original size:13 final size:13
Alignment explanation
Indices: 15822883--15822907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15822873 GTAAGTGATT
15822883 TTGATGATTTTTC
1 TTGATGATTTTTC
15822896 TTGATGATTTTT
1 TTGATGATTTTT
15822908 GCACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:15823671 original size:46 final size:46
Alignment explanation
Indices: 15823600--15823772 Score: 178
Period size: 46 Copynumber: 3.7 Consensus size: 46
15823590 TTAATTGTAT
*
15823600 GCTAGTGTAAGACATGTCTAAGACATGCATTGGCCACATT-ACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGG-CACATTGACGAGA
* * *
15823646 GCTAGTGTAAGACCTATCTGGGACATGGCA-T--CAGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACAT-GCATTGGCA-CATT--GACGAGA
* *
15823693 GCTAGTGTAAGACATGTCTGGGACATGCATCGG--CATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGCACATT--GACGAGA
*
15823739 GCTAGTGTAAGACATGTTTAGGACATGCATTGGC
1 GCTAGTGTAAGACATGTCTAGGACATGCATTGGC
15823773 CTCGAGATGT
Statistics
Matches: 108, Mismatches: 10, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
43 2 0.02
44 4 0.04
46 69 0.64
47 33 0.31
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATTGGCACATTGACGAGA
Found at i:15823704 original size:47 final size:46
Alignment explanation
Indices: 15823640--15823768 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
15823630 TGGCCACATT
*
15823640 ACGAGAGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCATTGAG
1 ACGAGAGCTAGTGTAAGACATATCTGGGACAT-GCATCAGCATTGAG
* *
15823687 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG
1 ACGAGAGCTAGTGTAAGACATATCTGGGACATGCATCAGCATTGAG
* * *
15823733 ACGAGAGCTAGTGTAAGACATGTTTAGGACATGCAT
1 ACGAGAGCTAGTGTAAGACATATCTGGGACATGCAT
15823769 TGGCCTCGAG
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 47 0.61
47 30 0.39
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (46 bp):
ACGAGAGCTAGTGTAAGACATATCTGGGACATGCATCAGCATTGAG
Found at i:15823763 original size:93 final size:89
Alignment explanation
Indices: 15823600--15823825 Score: 224
Period size: 93 Copynumber: 2.5 Consensus size: 89
15823590 TTAATTGTAT
** * *
15823600 GCTAGTGTAAGACATGTCTAAGACATGCATTGGCCACATTACGAGAGCTAGTGTAAGACCTATCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTACGAGAGCTAGTGTAAGACATATCT
* *
15823665 GGGACATGGCATCAGCATTGAGACG-AGA
63 AGGACAT-GCATCAGCATCGAGACGTA-A
* *
15823693 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATT---ACGAGAGCTAGTGTAAGACATATCT
** * *
15823758 AGGACATGCATTGGCCTCGAGATGTAA
63 AGGACATGCATCAGCATCGAGACGTAA
* * *
15823785 GCCAGTGTAAGACATGTGTGGCACATGCATCGGC--TACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTACGAGA
15823826 TGTGTCAGTG
Statistics
Matches: 114, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
87 6 0.05
90 5 0.04
92 44 0.39
93 59 0.52
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (89 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTACGAGAGCTAGTGTAAGACATATCTAGG
ACATGCATCAGCATCGAGACGTAA
Found at i:15823860 original size:92 final size:92
Alignment explanation
Indices: 15823640--15823906 Score: 220
Period size: 92 Copynumber: 2.9 Consensus size: 92
15823630 TGGCCACATT
* * * ** * * * *
15823640 ACGAGAGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCATTGAGACG-AGAGCTAGTGTAAG
1 ACGAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATTGGCCTCGAGATGTA-AGCCAGTGTAAG
* *
15823704 ACATGTCTGGGACATGCATCGGCATTGAG
64 ACATGTCTGGCACATGCATCGGCATCGAG
*
15823733 ACGAGAGCTAGTGTAAGACATGTTTAGGACATGCATTGGCCTCGAGATGTAAGCCAGTGTAAGAC
1 ACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCGAGATGTAAGCCAGTGTAAGAC
*
15823798 ATGTGTGGCACATGCATCGGC-TACGAG
66 ATGTCTGGCACATGCATCGGCAT-CGAG
* * * *** * *
15823825 ATGTG-TC-AGTGTAAGACCATGTCT-GTGACATTGCATTGGCAAGGATATGTGAGAGCTAGTGT
1 ACGAGAGCTAGTGTAAGA-CATGTCTAG-GACA-TGCATTGGCCTCGAGATGT-A-AGCCAGTGT
*
15823887 AAGACCATGTCTGGTACATG
61 AAGA-CATGTCTGGCACATG
15823907 GCGTCGACCT
Statistics
Matches: 142, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
90 10 0.07
91 12 0.08
92 65 0.46
93 30 0.21
94 12 0.08
95 13 0.09
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (92 bp):
ACGAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTCGAGATGTAAGCCAGTGTAAGAC
ATGTCTGGCACATGCATCGGCATCGAG
Found at i:15823948 original size:49 final size:49
Alignment explanation
Indices: 15823882--15824059 Score: 218
Period size: 49 Copynumber: 3.7 Consensus size: 49
15823872 TGTGAGAGCT
* * *
15823882 AGTGTAAGACCATGTCTGGTACATGGCGTCGACCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTAGATAGTC
* * * * *
15823931 AGTGTAAGACCATGTCTGGAACATGGCATC-AACTTGA--TAGGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTAGAT-AGTC
* * *
15823978 AGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTAGATAGTC
*
15824027 AGTGTAAGACCATGTTTGGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
15824060 ATTATGCCTT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
46 3 0.03
47 31 0.29
48 9 0.08
49 62 0.57
50 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTAGATAGTC
Found at i:15824002 original size:47 final size:47
Alignment explanation
Indices: 15823644--15824004 Score: 184
Period size: 46 Copynumber: 7.7 Consensus size: 47
15823634 CACATTACGA
* * * *
15823644 GAGCTAGTGTAAGACC-TATCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TTGAGAGGT
* * * *
15823691 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TTGAGAGGT
* * * ** * *
15823737 GAGCTAGTGTAAGA-CATGTTTAGGACAT-GCATTGGCCTCGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CTTGAGAGGT
* * * * *
15823783 AAGCCAGTGTAAGA-CATGTGTGGCACAT-GCATCGGC-T-ACGAGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGA-GAGGT
* * * * ** ** * *
15823827 GTGTCAGTGTAAGACCATGTCTGTGACATTGCATTGGCAAGGATATGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-TTGAGA-G-GT
* * * * * ** *
15823877 GAGCTAGTGTAAGACCATGTCTGGTACATGGCGTCGACCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGCTTGA--GAGGT
* * * *
15823927 -AGTCAGTGTAAGACCATGTCTGGAACATGGCATCAACTTGATAGGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAGAGGT
15823973 GAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC
15824005 GTCGACCTCA
Statistics
Matches: 247, Mismatches: 53, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
43 1 0.00
44 14 0.06
45 12 0.05
46 95 0.38
47 55 0.22
48 6 0.02
49 32 0.13
50 29 0.12
51 2 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGAGAGGT
Found at i:15824002 original size:96 final size:96
Alignment explanation
Indices: 15823877--15824056 Score: 306
Period size: 96 Copynumber: 1.9 Consensus size: 96
15823867 GGATATGTGA
* * *
15823877 GAGCTAGTGTAAGACCATGTCTGGTACATGGCGTCGACCTCGATTTCGATAGTCAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTCGATAGTCAGTGTAAGACC
15823942 ATGTCTGGAACATGGCATCAACTTGATAGGT
66 ATGTCTGGAACATGGCATCAACTTGATAGGT
*
15823973 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTTGATAGTCAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTCGATAGTCAGTGTAAGACC
* *
15824038 ATGTTTGGGACATGGCATC
66 ATGTCTGGAACATGGCATC
15824057 GACATTATGC
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 78 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (96 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCAATTTCGATAGTCAGTGTAAGACC
ATGTCTGGAACATGGCATCAACTTGATAGGT
Found at i:15826204 original size:20 final size:20
Alignment explanation
Indices: 15826176--15826234 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
15826166 TTTTAAAATA
* *
15826176 AAGTTAAAATTATTTTAATC
1 AAGTTAAAATCATTTTAACC
* * *
15826196 AAGTCAAAATGATTTCAACC
1 AAGTTAAAATCATTTTAACC
15826216 AAGTTAAAATCATTTTAAC
1 AAGTTAAAATCATTTTAAC
15826235 ACATAAAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.36
Consensus pattern (20 bp):
AAGTTAAAATCATTTTAACC
Found at i:15826220 original size:40 final size:40
Alignment explanation
Indices: 15826176--15826258 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
15826166 TTTTAAAATA
* * *
15826176 AAGTTAAAATTATTTTAATCA-AGTCAAAATGA-TTTCAACC
1 AAGTTAAAATCATTTTAA-CACA-TAAAAATGATTTTCAAAC
15826216 AAGTTAAAATCATTTTAACACATAAAAATGATTTTCAAAC
1 AAGTTAAAATCATTTTAACACATAAAAATGATTTTCAAAC
15826256 AAG
1 AAG
15826259 CCAAAAAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
39 10 0.26
40 28 0.74
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (40 bp):
AAGTTAAAATCATTTTAACACATAAAAATGATTTTCAAAC
Found at i:15832400 original size:5 final size:6
Alignment explanation
Indices: 15832372--15832406 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
15832362 TGTTCTTAAA
*
15832372 AAAAAGG AAAATG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAA-G AAAAAG AAAAAG AAAAAG AAAAAG AAAA
15832407 TTGATTGAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.85
7 4 0.15
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:15833012 original size:83 final size:83
Alignment explanation
Indices: 15832912--15833073 Score: 270
Period size: 83 Copynumber: 2.0 Consensus size: 83
15832902 CATTTGAAAT
*
15832912 TTTAAGGAAAAAGTTAGAAAAATTCAACTGCAGGGGTCACACGGCTGATACACATAGCCGTGTCC
1 TTTAAGGAAAAAGTTAGAAAAATTCAACTGCAGGGGTCACACGGCTGATACACACAGCCGTGTCC
15832977 CAGCCCGTGTCCGTAAAA
66 CAGCCCGTGTCCGTAAAA
* * *
15832995 TTTAAGGAAAAAGTTAGAAAAATTCAACTGCAGGTGTCACACGGCTGATACACACGGTCGTGTCC
1 TTTAAGGAAAAAGTTAGAAAAATTCAACTGCAGGGGTCACACGGCTGATACACACAGCCGTGTCC
* *
15833060 CAGCCTGTTTCCGT
66 CAGCCCGTGTCCGT
15833074 GCCCATGTAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
83 73 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (83 bp):
TTTAAGGAAAAAGTTAGAAAAATTCAACTGCAGGGGTCACACGGCTGATACACACAGCCGTGTCC
CAGCCCGTGTCCGTAAAA
Found at i:15834156 original size:22 final size:24
Alignment explanation
Indices: 15834120--15834165 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
15834110 ATCAATCCAC
15834120 TTTTCCATTTCCAAT-TC-ATATA
1 TTTTCCATTTCCAATATCGATATA
15834142 TTTTGCCATTT-CAATATCGATATA
1 TTTT-CCATTTCCAATATCGATATA
15834166 GAACTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.38
23 8 0.38
24 5 0.24
ACGTcount: A:0.28, C:0.20, G:0.04, T:0.48
Consensus pattern (24 bp):
TTTTCCATTTCCAATATCGATATA
Found at i:15841169 original size:27 final size:27
Alignment explanation
Indices: 15841129--15841181 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
15841119 TCTCCCTTTC
*
15841129 CATTAGATTTTCTAGTTCCTTTGTGAA
1 CATTAGATTATCTAGTTCCTTTGTGAA
*
15841156 CATTAGATTATCTAGTTCTTTTGTGA
1 CATTAGATTATCTAGTTCCTTTGTGA
15841182 GCTTACTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.23, C:0.13, G:0.15, T:0.49
Consensus pattern (27 bp):
CATTAGATTATCTAGTTCCTTTGTGAA
Found at i:15842676 original size:16 final size:16
Alignment explanation
Indices: 15842657--15842698 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
15842647 TTTAGCCATT
15842657 TTTACTTTTA-TTGTAA
1 TTTACTTTTAGTT-TAA
*
15842673 TTTATTTTTAGTTTAA
1 TTTACTTTTAGTTTAA
15842689 TTTCACTTTT
1 TTT-ACTTTT
15842699 CTAACTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (16 bp):
TTTACTTTTAGTTTAA
Found at i:15855151 original size:63 final size:63
Alignment explanation
Indices: 15855071--15855199 Score: 240
Period size: 63 Copynumber: 2.0 Consensus size: 63
15855061 TTATTTTTAA
* *
15855071 ATTTTTTTCAATTGAATTAATGACTATTTAATTCGTAACACGAATTTAATTATAAACTTAGAT
1 ATTTTTTTCAATTGAATTAATGACCATTTAATTCGTAACACAAATTTAATTATAAACTTAGAT
15855134 ATTTTTTTCAATTGAATTAATGACCATTTAATTCGTAACACAAATTTAATTATAAACTTAGAT
1 ATTTTTTTCAATTGAATTAATGACCATTTAATTCGTAACACAAATTTAATTATAAACTTAGAT
15855197 ATT
1 ATT
15855200 ATAATGATTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (63 bp):
ATTTTTTTCAATTGAATTAATGACCATTTAATTCGTAACACAAATTTAATTATAAACTTAGAT
Found at i:15858355 original size:94 final size:95
Alignment explanation
Indices: 15858248--15858463 Score: 244
Period size: 94 Copynumber: 2.3 Consensus size: 95
15858238 GTGCCAATGT
* * *
15858248 CATGTCCTAGACATGGTCTTACACTGGCATCTCTAT-AC-ATGCCGATTCCATGTCCCAAACAT-
1 CATGTCCCAGACAT-GTCTTACACTGGCATCTC-ATCACAATGCCAATGCCATGTCCCAAACATG
* ** *
15858310 GTCTTACACTGG-TTTACATTTTGAGGTCGATA
64 GTCTTACACTGGCTGT-CATAATGAGGCCGATA
* * *
15858342 CATGTCCCAGACATGTCTTACACTGG-TTCTCATCTCAATGCCAATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTGGCATCTCATCACAATGCCAATGCCATGTCCCAAACATGGT
* *
15858406 CTTACACTGGCTGTCATAATGCGGCCGATG
66 CTTACACTGGCTGTCATAATGAGGCCGATA
* *
15858436 CATGTTCCAGACATATCTTACACTGGCA
1 CATGTCCCAGACATGTCTTACACTGGCA
15858464 CACAAATAAC
Statistics
Matches: 102, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
91 2 0.02
92 5 0.05
93 33 0.32
94 60 0.59
95 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (95 bp):
CATGTCCCAGACATGTCTTACACTGGCATCTCATCACAATGCCAATGCCATGTCCCAAACATGGT
CTTACACTGGCTGTCATAATGAGGCCGATA
Found at i:15858440 original size:47 final size:43
Alignment explanation
Indices: 15858239--15858462 Score: 153
Period size: 46 Copynumber: 4.8 Consensus size: 43
15858229 CACGTATCTG
* *
15858239 TGCCAATGTCATGTCCTAGACATGGTCTTACACTGGCATCTCTATACA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-TCTC-ATA-A
* * * *
15858287 TGCCGATTCCATGTCCCAAACATGTCTTACACTGG-TTTACATTTTGA
1 TGCCGA-TGCATGTCCCAGACATGTCTTACACTGGCTCT-CA---TAA
* * * *
15858334 GGTCGATACATGTCCCAGACATGTCTTACACTGGTTCTCATCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--T-AA
* *
15858380 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTGTCATAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAA
* *
15858425 TGCGGCCGATGCATGTTCCAGACATATCTTACACTGGC
1 T---GCCGATGCATGTCCCAGACATGTCTTACACTGGC
15858463 ACACAAATAA
Statistics
Matches: 142, Mismatches: 22, Indels: 26
0.75 0.12 0.14
Matches are distributed among these distances:
45 8 0.06
46 47 0.33
47 46 0.32
48 40 0.28
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (43 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAA
Found at i:15872989 original size:27 final size:27
Alignment explanation
Indices: 15872958--15873065 Score: 76
Period size: 27 Copynumber: 4.0 Consensus size: 27
15872948 TAAGACCCCA
*
15872958 ATTTGTAAAATTATCGAAATACCCCTG
1 ATTTGTAAAATTATCAAAATACCCCTG
* * * *
15872985 ATTTGTGAAGTTA-CTAAAATACTCTTG
1 ATTTGTAAAATTATC-AAAATACCCCTG
* * *
15873012 ATTTGTGAAATTACCAAAATA-CCTTCG
1 ATTTGTAAAATTATCAAAATACCCCT-G
* * **
15873039 GTTTGTAAAATAATCGTAATACCCCTG
1 ATTTGTAAAATTATCAAAATACCCCTG
15873066 TAGGGTAAAA
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
26 4 0.06
27 55 0.87
28 4 0.06
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (27 bp):
ATTTGTAAAATTATCAAAATACCCCTG
Found at i:15873073 original size:27 final size:27
Alignment explanation
Indices: 15873043--15873130 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
15873033 CCTTCGGTTT
15873043 GTAAAATAA-TCGTAATACCCCTGTAGG
1 GTAAAATAACT-GTAATACCCCTGTAGG
* **
15873070 GTAAAATGACTGTAATGTCCCTGTAGG
1 GTAAAATAACTGTAATACCCCTGTAGG
* * * ** *
15873097 GTAAAATGACAGTGATACATCTGTATG
1 GTAAAATAACTGTAATACCCCTGTAGG
15873124 GTAAAAT
1 GTAAAAT
15873131 GATAATTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAAAATAACTGTAATACCCCTGTAGG
Found at i:15873376 original size:26 final size:27
Alignment explanation
Indices: 15873269--15873377 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
15873259 ATAGAGGAAG
* *
15873269 TACTG-TACTGGTGACTATGTCAC-AT
1 TACTGATACTGGTGGCTATGCCACAAT
* *
15873294 TCACTGTTAC-GGTGGCTATGTCACAAT
1 T-ACTGATACTGGTGGCTATGCCACAAT
15873321 TACTGATACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACAAT
*
15873348 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
15873374 TACT
1 TACT
15873378 ATTTTTAGCA
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
25 1 0.01
26 36 0.47
27 39 0.51
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:15873377 original size:53 final size:52
Alignment explanation
Indices: 15873269--15873377 Score: 132
Period size: 53 Copynumber: 2.1 Consensus size: 52
15873259 ATAGAGGAAG
* * *
15873269 TACTGTACTGGTGACTATGTCACATTCACTGTTACGGTGGCTATGTCACAAT
1 TACTGTACTGGTGACTATGCCACATTCACTGATACGGTGGCTATGCCACAAT
* *
15873321 TACTGATACTGGTGGCTATGCCACAATT-ACTGATACTGGTGGCT-TGCCACATT
1 TACTG-TACTGGTGACTATGCCAC-ATTCACTGATAC-GGTGGCTATGCCACAAT
15873374 TACT
1 TACT
15873378 ATTTTTAGCA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
52 5 0.10
53 34 0.69
54 10 0.20
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (52 bp):
TACTGTACTGGTGACTATGCCACATTCACTGATACGGTGGCTATGCCACAAT
Found at i:15873595 original size:28 final size:28
Alignment explanation
Indices: 15873536--15873666 Score: 73
Period size: 28 Copynumber: 4.4 Consensus size: 28
15873526 ATTACACTGT
* * * * *
15873536 ACTGATACTGTATTGGGCTTAGGCCCAT
1 ACTGTTACTGTATAGGGCTAAAGCCCAG
*
15873564 ACTGTTACTGTATAGGGCTAAAGCTCAG
1 ACTGTTACTGTATAGGGCTAAAGCCCAG
* *
15873592 ACTGTTCTGTTACTGTATAGGGCTAAGGCCAAAATG
1 A-----CTGTTACTGTATAGGGCTAAAGCC--CA-G
* * *
15873628 TACTGATACTGGATAGGGCTCAAGCCCAG
1 -ACTGTTACTGTATAGGGCTAAAGCCCAG
*
15873657 ATTGTTACTG
1 ACTGTTACTG
15873667 CATGCATTGT
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
28 31 0.40
29 1 0.01
30 1 0.01
32 20 0.26
33 22 0.28
35 1 0.01
36 1 0.01
37 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAAGCCCAG
Found at i:15873602 original size:33 final size:32
Alignment explanation
Indices: 15873565--15873662 Score: 106
Period size: 33 Copynumber: 3.0 Consensus size: 32
15873555 TAGGCCCATA
*
15873565 CTGTTACTGTATAGGGCTAAAGCTCAGACTGTT
1 CTGTTACTGTATAGGGCTAAAGC-CAGAATGTT
* * *
15873598 CTGTTACTGTATAGGGCTAAGGCCAAAATGTA
1 CTGTTACTGTATAGGGCTAAAGCCAGAATGTT
* * * *
15873630 CTGATACTGGATAGGGCTCAAGCCCAGATTGTT
1 CTGTTACTGTATAGGGCTAAAG-CCAGAATGTT
15873663 ACTGCATGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
32 24 0.45
33 29 0.55
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (32 bp):
CTGTTACTGTATAGGGCTAAAGCCAGAATGTT
Found at i:15873644 original size:32 final size:33
Alignment explanation
Indices: 15873563--15873652 Score: 110
Period size: 32 Copynumber: 2.8 Consensus size: 33
15873553 CTTAGGCCCA
* *
15873563 TACTGTTACTGTATAGGGCTAAAGCTCAGACTG
1 TACTGTTACTGTATAGGGCTAAAGCTCAAAATG
* *
15873596 TTCTGTTACTGTATAGGGCTAAGGC-CAAAATG
1 TACTGTTACTGTATAGGGCTAAAGCTCAAAATG
* * *
15873628 TACTGATACTGGATAGGGCTCAAGC
1 TACTGTTACTGTATAGGGCTAAAGC
15873653 CCAGATTGTT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
32 25 0.52
33 23 0.48
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (33 bp):
TACTGTTACTGTATAGGGCTAAAGCTCAAAATG
Found at i:15877141 original size:17 final size:18
Alignment explanation
Indices: 15877114--15877147 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15877104 TCGGCTGTAC
*
15877114 TGGGCCTTATGGTCCCAA
1 TGGGCCTTATGGGCCCAA
15877132 TGGG-CTTATGGGCCCA
1 TGGGCCTTATGGGCCCA
15877148 CACGAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.15, C:0.26, G:0.32, T:0.26
Consensus pattern (18 bp):
TGGGCCTTATGGGCCCAA
Found at i:15877638 original size:27 final size:27
Alignment explanation
Indices: 15877596--15877675 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
15877586 GTTAAGACCT
* * **
15877596 TGATTTGTAAAATTACCGAAATATTCC
1 TGATTTGTGAAATTACCAAAATACCCC
*
15877623 TGATTTGTGAAGTTACCAAAATACCCC
1 TGATTTGTGAAATTACCAAAATACCCC
*
15877650 TAATTTGTGAAATTACCAAAATACCC
1 TGATTTGTGAAATTACCAAAATACCC
15877676 TAAATTTATA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
TGATTTGTGAAATTACCAAAATACCCC
Found at i:15877718 original size:27 final size:27
Alignment explanation
Indices: 15877688--15877905 Score: 265
Period size: 27 Copynumber: 8.1 Consensus size: 27
15877678 AATTTATAAT
*
15877688 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
* *
15877715 ATGACCGTAATACCACTGTAGGGTAAG
1 ATGACCGTAATACCCCTGTAGGGTAAA
* *
15877742 ATGACCATAATGCCCCTGTAGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
* *
15877769 ATGACCGTAATATCTCTGTAGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
*
15877796 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
* * * *
15877823 ATGGCCATAATGCCCCTGTGGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
* ** *
15877850 ATAATAGTAATACCCTTGTAGGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
* * *
15877877 ATGATCGTAATACCCTTGTATGGTAAA
1 ATGACCGTAATACCCCTGTAGGGTAAA
15877904 AT
1 AT
15877906 AACAATTATA
Statistics
Matches: 161, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.27
Consensus pattern (27 bp):
ATGACCGTAATACCCCTGTAGGGTAAA
Found at i:15878115 original size:27 final size:26
Alignment explanation
Indices: 15878045--15878135 Score: 148
Period size: 27 Copynumber: 3.5 Consensus size: 26
15878035 TGGAGGAAGT
15878045 ACTGTATTGGTGACTATGTCACATT-
1 ACTGTATTGGTGACTATGTCACATTA
*
15878070 ACTGTACTGGTGACTATGTCACATTA
1 ACTGTATTGGTGACTATGTCACATTA
15878096 ACTGTTATTGGTGACTATGTCACATTA
1 ACTG-TATTGGTGACTATGTCACATTA
15878123 ACTGTTATTGGTG
1 ACTG-TATTGGTG
15878136 GCTGTGCCAC
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
25 24 0.39
26 4 0.06
27 34 0.55
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (26 bp):
ACTGTATTGGTGACTATGTCACATTA
Found at i:15878146 original size:27 final size:26
Alignment explanation
Indices: 15878044--15878181 Score: 147
Period size: 27 Copynumber: 5.3 Consensus size: 26
15878034 ATGGAGGAAG
15878044 TACTG-TATTGGTGACTATGTCACAT
1 TACTGTTATTGGTGACTATGTCACAT
*
15878069 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTATTGGTGACTATGTCACAT
15878094 TAACTGTTATTGGTGACTATGTCACAT
1 T-ACTGTTATTGGTGACTATGTCACAT
* * *
15878121 TAACTGTTATTGGTGGCTGTGCCACAAT
1 T-ACTGTTATTGGTGACTATGTCAC-AT
* * * *
15878149 TACTGATACTGGTGGCT-TGCCACATT
1 TACTGTTATTGGTGACTATGTCACA-T
15878175 TACTGTT
1 TACTGTT
15878182 TCTGGCAGCT
Statistics
Matches: 101, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
25 26 0.26
26 17 0.17
27 55 0.54
28 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (26 bp):
TACTGTTATTGGTGACTATGTCACAT
Found at i:15878411 original size:33 final size:34
Alignment explanation
Indices: 15878369--15878464 Score: 101
Period size: 33 Copynumber: 2.9 Consensus size: 34
15878359 GCCTACACTG
15878369 TTACTGTATAGGGCTAGAGCCCAGACTGTTCT-A
1 TTACTGTATAGGGCTAGAGCCCAGACTGTTCTGA
* *
15878402 TTACTGTATAGGGCTA-AGGCCTAGACTGTACTGA
1 TTACTGTATAGGGCTAGA-GCCCAGACTGTTCTGA
* * *
15878436 -TATTGGATAGGGCTCAGA-CCCAAACTGTT
1 TTACTGTATAGGGCT-AGAGCCCAGACTGTT
15878465 ACTGCATGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
32 1 0.02
33 48 0.92
34 2 0.04
35 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (34 bp):
TTACTGTATAGGGCTAGAGCCCAGACTGTTCTGA
Found at i:15888783 original size:13 final size:13
Alignment explanation
Indices: 15888765--15888790 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15888755 GGATTATTAT
15888765 GATGTAATTTTTA
1 GATGTAATTTTTA
15888778 GATGTAATTTTTA
1 GATGTAATTTTTA
15888791 TTATATATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GATGTAATTTTTA
Found at i:15889210 original size:12 final size:11
Alignment explanation
Indices: 15889195--15889247 Score: 58
Period size: 12 Copynumber: 4.9 Consensus size: 11
15889185 CTTTCCCTCA
15889195 TTCTTTTCATTT
1 TTCTTTTC-TTT
15889207 TTCTTTTC--T
1 TTCTTTTCTTT
*
15889216 TT-TATTCTTT
1 TTCTTTTCTTT
15889226 TTCTTTTTCTTT
1 TTC-TTTTCTTT
15889238 TTCTTTTCTT
1 TTCTTTTCTT
15889248 CTACACTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
8 4 0.11
9 3 0.09
10 3 0.09
11 7 0.20
12 18 0.51
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:15889213 original size:6 final size:6
Alignment explanation
Indices: 15889198--15889244 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
15889188 TCCCTCATTC
15889198 TTTTCAT TTTTC- TTTTCTT TTATTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTC-T TTTTCT TTTTC-T TT-TTCT TTTTCT TTTTCT TTTTCT TTT
15889245 CTTCTACACT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 5 0.14
6 19 0.51
7 10 0.27
8 3 0.08
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTCT
Found at i:15889214 original size:25 final size:26
Alignment explanation
Indices: 15889174--15889238 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
15889164 TTTGCTTTTA
15889174 TTTT-ATTTTTGC-TTTCCCTCATTC-
1 TTTTCATTTTT-CTTTTCCCTCATTCT
** *
15889198 TTTTCATTTTTCTTTTCTTTTATTCT
1 TTTTCATTTTTCTTTTCCCTCATTCT
15889224 TTTTC-TTTTTCTTTT
1 TTTTCATTTTTCTTTT
15889239 TCTTTTCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 5 0.14
25 25 0.71
26 5 0.14
ACGTcount: A:0.06, C:0.18, G:0.02, T:0.74
Consensus pattern (26 bp):
TTTTCATTTTTCTTTTCCCTCATTCT
Found at i:15895840 original size:29 final size:29
Alignment explanation
Indices: 15895806--15895865 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
15895796 AATACTTTTT
15895806 TCCATGGAGATACTTTTAAGAATACTCTA
1 TCCATGGAGATACTTTTAAGAATACTCTA
*
15895835 TCCATGGAGATACTTTTAGGAATACTCTA
1 TCCATGGAGATACTTTTAAGAATACTCTA
15895864 TC
1 TC
15895866 TCCCACTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (29 bp):
TCCATGGAGATACTTTTAAGAATACTCTA
Found at i:15899182 original size:28 final size:27
Alignment explanation
Indices: 15899140--15899241 Score: 105
Period size: 28 Copynumber: 3.7 Consensus size: 27
15899130 ATATTATATG
** *
15899140 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAA-TATCGAGGA
* * *
15899168 TGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGA-ATATCGAGGA
*
15899196 TGGCACTTAGTGTGCGAATTAACGAGGA
1 TGGCACTTAGTGTGCGAA-TATCGAGGA
*
15899224 TGGTACTTAGTGTGCGAA
1 TGGCACTTAGTGTGCGAA
15899242 ACATCCAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 1 0.02
28 59 0.97
29 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (27 bp):
TGGCACTTAGTGTGCGAATATCGAGGA
Found at i:15899226 original size:56 final size:55
Alignment explanation
Indices: 15899140--15899301 Score: 184
Period size: 56 Copynumber: 2.9 Consensus size: 55
15899130 ATATTATATG
** *
15899140 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATC-GGGATGGCACTTAGTGTGCGATACATCCAAAA
* * * *
15899196 TGGCACTTAGTGTGCGAATTAACGAGGATGGTACTTAGTGTGCGAAACATCCAAAA
1 TGGCACTTAGTGTGCGAAGTATCG-GGATGGCACTTAGTGTGCGATACATCCAAAA
* *
15899252 CGACACTTAGTGTGC-AAGGTATCGGGTATGGCA-TCTAGTGTGCGATACAT
1 TGGCACTTAGTGTGCGAA-GTATCGGG-ATGGCACT-TAGTGTGCGATACAT
15899302 TGAATATTCA
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
55 6 0.07
56 83 0.93
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (55 bp):
TGGCACTTAGTGTGCGAAGTATCGGGATGGCACTTAGTGTGCGATACATCCAAAA
Found at i:15905527 original size:40 final size:40
Alignment explanation
Indices: 15905443--15905667 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
15905433 TTGAATGATG
* * * *
15905443 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
15905483 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15905523 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15905562 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15905603 T-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15905643 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15905668 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 37 0.22
40 118 0.71
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15905689 original size:119 final size:119
Alignment explanation
Indices: 15905443--15905700 Score: 294
Period size: 119 Copynumber: 2.2 Consensus size: 119
15905433 TTGAATGATG
*
15905443 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
* * **
15905508 GTGCGAGTTACTAATTCCGGGCTAAGTCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
15905562 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAT-CGGGCTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-ATCCGGACTAAGAT-CCGAAGGCA
* * *
15905624 TTTGTGCGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
63 TTTGTGCGAGTCACTAAT-ACCGGGCTAAGT-CCGAAGGCATTGGAACGAGTTA-CTAAA
* *
15905682 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
15905701 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 32 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGTCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:15913676 original size:40 final size:40
Alignment explanation
Indices: 15913439--15913662 Score: 287
Period size: 40 Copynumber: 5.6 Consensus size: 40
15913429 TGAATGATGT
* * * *
15913439 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTCACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
15913479 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
15913519 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15913557 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15913598 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
15913638 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
15913663 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:15913684 original size:119 final size:119
Alignment explanation
Indices: 15913438--15913695 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
15913428 TTGAATGATG
* *
15913438 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTCACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACCATAACCGGACTAAGATCCGAAGGCATTT
* * **
15913503 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
15913557 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTCACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
15913620 TTGTGCGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
15913677 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
15913696 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.71
120 31 0.26
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTCACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:15916763 original size:28 final size:28
Alignment explanation
Indices: 15916732--15916859 Score: 152
Period size: 28 Copynumber: 4.6 Consensus size: 28
15916722 AATAATGGGG
15916732 ATGGCACTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGATACATCCAGA
*
15916760 ATGGCACTTAGTGTGTGATACATCCAGA
1 ATGGCACTTAGTGTGCGATACATCCAGA
* * *
15916788 ATGGCACTTAGTGTGTGAAGTA-A-CGAGG
1 ATGGCACTTAGTGTGCG-A-TACATCCAGA
* * *
15916816 ATGGCACTTAGTGTACGAAACATCCAAA
1 ATGGCACTTAGTGTGCGATACATCCAGA
*
15916844 ACGGCACTTAGTGTGC
1 ATGGCACTTAGTGTGC
15916860 AAGGTATCGG
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 2 0.02
28 78 0.92
29 2 0.02
30 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGATACATCCAGA
Found at i:15916876 original size:56 final size:56
Alignment explanation
Indices: 15916760--15916894 Score: 150
Period size: 56 Copynumber: 2.4 Consensus size: 56
15916750 TACATCCAGA
* * * *
15916760 ATGGCACTTAGTGTGTGATACATCCAGAATGGCACTTAGTGTGTGAAGTAACGAGG
1 ATGGCACTTAGTGTGCGATACATCCAAAACGGCACTTAGTGTGTCAAGTAACGAGG
* * * *
15916816 ATGGCACTTAGTGTACGAAACATCCAAAACGGCACTTAGTGTG-CAAGGTATCG-GCT
1 ATGGCACTTAGTGTGCGATACATCCAAAACGGCACTTAGTGTGTCAA-GTAACGAG-G
15916872 ATGGCA-TCTAGTGTGCGATACAT
1 ATGGCACT-TAGTGTGCGATACAT
15916895 TGAATATTCA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
55 4 0.06
56 62 0.94
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (56 bp):
ATGGCACTTAGTGTGCGATACATCCAAAACGGCACTTAGTGTGTCAAGTAACGAGG
Found at i:15924143 original size:47 final size:48
Alignment explanation
Indices: 15924070--15924197 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 48
15924060 GTGCGATGCT
* * * *
15924070 GATGCTATGTTCCAAACATGGTCTTACACTGGC-TCACACATCTAAGTC
1 GATGCCATGTTCCAGACA-GGTCTTACACTGGCTTCACACATCGAAGCC
* * * * *
15924118 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCC
1 GATGCCATGTTCCAGACAGGTCTTACACTGGC-TTCACACATCGAAGCC
15924167 GATGCCATGTTCCAGACAGGTCTTACACTGG
1 GATGCCATGTTCCAGACAGGTCTTACACTGG
15924198 TTCTCATCTA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
47 13 0.19
48 15 0.22
49 39 0.58
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCATGTTCCAGACAGGTCTTACACTGGCTTCACACATCGAAGCC
Found at i:15924182 original size:49 final size:49
Alignment explanation
Indices: 15924117--15924301 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 49
15924107 ACATCTAAGT
15924117 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
* * *
15924166 CGATGCCATGTTCCAGACAGGTCTTACACTG-GTTCTCATCTATCGGTGTCGATGCAGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTT-TCA--TA----TATCGA-G--GC
* * *
15924224 CGATGCCATGTCCCAGACATGTCTTACACT-AGCTTGCATATCTCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGGC
* * *
15924273 CGATG-CATGTCCTAGACATGTCTTGCACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
15924302 AGCTCTCGTC
Statistics
Matches: 114, Mismatches: 10, Indels: 25
0.77 0.07 0.17
Matches are distributed among these distances:
48 24 0.21
49 40 0.35
51 3 0.03
52 5 0.04
55 5 0.04
56 3 0.03
58 32 0.28
59 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
Found at i:15924277 original size:58 final size:58
Alignment explanation
Indices: 15924164--15924279 Score: 137
Period size: 58 Copynumber: 2.0 Consensus size: 58
15924154 ATATATCGAG
* * * * *
15924164 GCCGATGCCATGTTCCAGACAGGTCTTACACTGGTTCTCATCTATCGGTGTCGATGCA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGCTTCGCATATATCGGTGCCGATGCA
* *
15924222 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTT-GCATATCTCGAG-GCCGATGCA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACT-GCTTCGCATATATCG-GTGCCGATGCA
15924280 TGTCCTAGAC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
58 45 0.92
59 4 0.08
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (58 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGCTTCGCATATATCGGTGCCGATGCA
Found at i:15924381 original size:89 final size:90
Alignment explanation
Indices: 15924229--15924393 Score: 228
Period size: 89 Copynumber: 1.8 Consensus size: 90
15924219 GCAGCCGATG
* * *
15924229 CCATGTCCCAGACATGTCTTACACTAGCTTGCATATCTCGAGGCCGATGCATGTCCTAGACATGT
1 CCATGTCCCAGACATGTCTTACACTAGCTTGCATATATCGAGGCCGATGCATGTCCCAAACATGT
*
15924294 CTTGCACTAGCTCTCGTCTTAATGC
66 CTTACACTAGCTCTCGTCTTAATGC
* * *
15924319 CCATGTCCCAGACATGGTCTTACACTTGCTCT-CATA-AT-GTGGCCGATGTATGTCCCAAACAT
1 CCATGTCCCAGACAT-GTCTTACACTAGCT-TGCATATATCGAGGCCGATGCATGTCCCAAACAT
15924381 GTCTTACACTAGC
64 GTCTTACACTAGC
15924394 ACACATCCAT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 32 0.48
90 16 0.24
91 17 0.26
92 1 0.02
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (90 bp):
CCATGTCCCAGACATGTCTTACACTAGCTTGCATATATCGAGGCCGATGCATGTCCCAAACATGT
CTTACACTAGCTCTCGTCTTAATGC
Found at i:15926546 original size:6 final size:6
Alignment explanation
Indices: 15926524--15926558 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
15926514 TTCCAAATGG
15926524 TTTCAT TTCTCCAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCAT TT-T-CAT TTTCAT TTTCAT TTTCAT TTT
15926559 GGAAAAAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.74
7 2 0.07
8 5 0.19
ACGTcount: A:0.14, C:0.20, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCAT
Found at i:15931586 original size:28 final size:28
Alignment explanation
Indices: 15931546--15931602 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
15931536 TTCGACATAG
15931546 TGAATTTTCTTCTCCTCTACCCGTGGTT
1 TGAATTTTCTTCTCCTCTACCCGTGGTT
*
15931574 TGAATTTTCTTCTCCTCTGCCCGTGGTT
1 TGAATTTTCTTCTCCTCTACCCGTGGTT
15931602 T
1 T
15931603 TTTCCCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.09, C:0.28, G:0.16, T:0.47
Consensus pattern (28 bp):
TGAATTTTCTTCTCCTCTACCCGTGGTT
Found at i:15931662 original size:12 final size:12
Alignment explanation
Indices: 15931645--15931672 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15931635 GTGTTCTTTA
15931645 TTTTATTTTATT
1 TTTTATTTTATT
15931657 TTTTATTTTATT
1 TTTTATTTTATT
15931669 TTTT
1 TTTT
15931673 TCACACATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:15934228 original size:5 final size:5
Alignment explanation
Indices: 15934218--15934246 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15934208 ATATCAATTG
15934218 ATTTA ATTTA ATTTA ATTTA ATTTA ATTT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTT
15934247 TTACTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
ATTTA
Found at i:15934946 original size:13 final size:13
Alignment explanation
Indices: 15934928--15934952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15934918 AGCAAATGAT
15934928 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
15934941 AAAAAGAAAAAA
1 AAAAAGAAAAAA
15934953 AAGGAGTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:15941635 original size:49 final size:49
Alignment explanation
Indices: 15941547--15941690 Score: 116
Period size: 49 Copynumber: 2.9 Consensus size: 49
15941537 TACGATCATG
* * * *
15941547 GGTTCAAGTATAACTAAGGCTTCCAATTTACGGTGGTTATACAGTAC-CA
1 GGTTTAAGTATAACTAAGGCTTCCAATTGACGATAGTTATACAGT-CGCA
* * * **
15941596 GGTTTAAGTATAACTAAGGC-TCTTAGTTGACGATAGTTATACGGTCGTG
1 GGTTTAAGTATAACTAAGGCTTC-CAATTGACGATAGTTATACAGTCGCA
* * *
15941645 GGTTTAAGTATAACTCAAGG--TCCAAGTTGACGGTGGTTATGCAGTC
1 GGTTTAAGTATAACT-AAGGCTTCCAA-TTGACGATAGTTATACAGTC
15941691 ACAAGTTCAA
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
48 4 0.05
49 68 0.89
50 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (49 bp):
GGTTTAAGTATAACTAAGGCTTCCAATTGACGATAGTTATACAGTCGCA
Found at i:15943143 original size:352 final size:351
Alignment explanation
Indices: 15942499--15943543 Score: 1880
Period size: 352 Copynumber: 3.0 Consensus size: 351
15942489 AAATGTTAAA
15942499 AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
1 AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
* *
15942564 TTTGAGGCTTGCATAAAAATTCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
66 TTTGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
15942629 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
131 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
* *
15942694 TTTCACGTTAATGAACCAACATTTATTTATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
196 TTTCAAGTTAATGAACCAACATTTATTCATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
15942759 CCATTTTTGTGTTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGA
261 CCATTTTTGT-TTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGA
*
15942824 TCCCAAAACATGACCAAAACATACATT
325 TCCCAAAACATGACCAAAACATACCTT
*
15942851 AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCCCAAAGCACTTTAAGGCACA
1 AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
**
15942916 AATGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
66 TTTGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
15942981 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
131 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
*
15943046 TTTCAAGTTAATGAACCAACATTTATTCATGTTTTGAAACCATTCAAAATCAACATTTAAGCATA
196 TTTCAAGTTAATGAACCAACATTTATTCATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
15943111 CCATTTTTGTTTTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGA
261 CCATTTTTG-TTTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGA
15943176 TCCCAAAACATGACCAAAACATACCTT
325 TCCCAAAACATGACCAAAACATACCTT
*
15943203 AACCTTCATTTGAAACCATTTCATGCCAAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
1 AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
*
15943268 TTTGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAATATAACATTAAGTC
66 TTTGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
15943333 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
131 AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
15943398 TTTCAAGTTAATGAACCAACATTTATTCATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
196 TTTCAAGTTAATGAACCAACATTTATTCATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
*
15943463 CCATTTTTG-------T-GT----TTTGCACATTCAATGAACCATTCAATCACTATACAAATGAT
261 CCATTTTTGTTTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGAT
15943516 CCCAAAACATGACCAAAACATACCTT
326 CCCAAAACATGACCAAAACATACCTT
15943542 AA
1 AA
15943544 TACAAGTGCA
Statistics
Matches: 676, Mismatches: 16, Indels: 15
0.96 0.02 0.02
Matches are distributed among these distances:
339 69 0.10
343 1 0.00
344 1 0.00
352 604 0.89
353 1 0.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (351 bp):
AACCTTCATTTGAAACCATTTCATGCCCAACAAAAAGTTTTATTCTCAAAGCACTTTAAGGCACA
TTTGAGACTTGCATAAAAATCCCTTTTAAACATATAACAAACATGATTAAACATAACATTAAGTC
AATCACAATCAATTCAACCAACATGCCCCATTTGACACTAAACCACTCCAATTGAACTTATACAC
TTTCAAGTTAATGAACCAACATTTATTCATGTTTTTAAACCATTCAAAATCAACATTTAAGCATA
CCATTTTTGTTTCAATTCATACCATTTGCACATTCAATGAACCATTCAATCACTATACAAATGAT
CCCAAAACATGACCAAAACATACCTT
Found at i:15945739 original size:20 final size:20
Alignment explanation
Indices: 15945696--15945741 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
15945686 TGGGATTACA
15945696 TTTCTTTGGAACTCACTAAG
1 TTTCTTTGGAACTCACTAAG
* * *
15945716 -TTCTTTTGAACTTACTTAG
1 TTTCTTTGGAACTCACTAAG
15945735 TTTCTTT
1 TTTCTTT
15945742 CTTCTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (20 bp):
TTTCTTTGGAACTCACTAAG
Found at i:15946410 original size:28 final size:28
Alignment explanation
Indices: 15946333--15946415 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
15946323 CACAAGATTG
* *
15946333 ATTTGCTCATACAAGCTGTAATATTCT-A
1 ATTTGCTCACACAAGCTGTGATATT-TGA
* *
15946361 ATTTGCTCACACGAGCTATGATATTTGA
1 ATTTGCTCACACAAGCTGTGATATTTGA
* *
15946389 ATTTGCTCACAAAAGTTGTGATATTTG
1 ATTTGCTCACACAAGCTGTGATATTTG
15946416 GGTTGCTTAC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.98
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.39
Consensus pattern (28 bp):
ATTTGCTCACACAAGCTGTGATATTTGA
Found at i:15947010 original size:34 final size:34
Alignment explanation
Indices: 15946972--15947076 Score: 192
Period size: 34 Copynumber: 3.1 Consensus size: 34
15946962 AATTGATTTA
15946972 AATCCCGATTTATAATAATTCATTTCAATTCATC
1 AATCCCGATTTATAATAATTCATTTCAATTCATC
**
15947006 AATCCAAATTTATAATAATTCATTTCAATTCATC
1 AATCCCGATTTATAATAATTCATTTCAATTCATC
15947040 AATCCCGATTTATAATAATTCATTTCAATTCATC
1 AATCCCGATTTATAATAATTCATTTCAATTCATC
15947074 AAT
1 AAT
15947077 TCTAAACATC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.38, C:0.19, G:0.02, T:0.41
Consensus pattern (34 bp):
AATCCCGATTTATAATAATTCATTTCAATTCATC
Found at i:15947153 original size:6 final size:6
Alignment explanation
Indices: 15947113--15947149 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
15947103 TAAACATATA
*
15947113 TCAA-T TCAA-T TCAATT TCAATT TCAATT TCATTT TCA
1 TCAATT TCAATT TCAATT TCAATT TCAATT TCAATT TCA
15947150 TTTTTAGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 9 0.30
6 21 0.70
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.49
Consensus pattern (6 bp):
TCAATT
Found at i:15949048 original size:33 final size:33
Alignment explanation
Indices: 15949003--15949066 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 33
15948993 GAATATAATT
* *
15949003 TGAGGGCTTAATTGACT-TTTTTAAATTATTTTA
1 TGAGGGCTTAATTAAATATTTTT-AATTATTTTA
15949036 TGAGGGAC-TAATTAAATATTTTTAATTATTT
1 TGAGGG-CTTAATTAAATATTTTTAATTATTT
15949067 AAGCTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.50
Consensus pattern (33 bp):
TGAGGGCTTAATTAAATATTTTTAATTATTTTA
Found at i:15949133 original size:19 final size:18
Alignment explanation
Indices: 15949095--15949168 Score: 71
Period size: 18 Copynumber: 4.2 Consensus size: 18
15949085 ATACTATAAT
**
15949095 AAATTTATGGAAAATATA
1 AAATTTATTAAAAATATA
15949113 AAATTTATTAAAAAGTATA
1 AAATTTATTAAAAA-TATA
* * *
15949132 AAATATAATAAAAATAGA
1 AAATTTATTAAAAATATA
*
15949150 AAA-TTA-TATAAATATA
1 AAATTTATTAAAAATATA
15949166 AAA
1 AAA
15949169 AGGTATTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
16 11 0.23
17 2 0.04
18 18 0.38
19 16 0.34
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (18 bp):
AAATTTATTAAAAATATA
Found at i:15949567 original size:30 final size:31
Alignment explanation
Indices: 15949533--15949602 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
15949523 TTTTCGACCT
15949533 TTTATAATAAGTTCATA-TCTTTCACAATAC
1 TTTATAATAAGTTCATAGTCTTTCACAATAC
** * *
15949563 TTTATAATATTTTTATAGTTTTTCACAATAC
1 TTTATAATAAGTTCATAGTCTTTCACAATAC
15949594 TTTATAATA
1 TTTATAATA
15949603 TTTTTATGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 14 0.40
31 21 0.60
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.50
Consensus pattern (31 bp):
TTTATAATAAGTTCATAGTCTTTCACAATAC
Found at i:15949590 original size:31 final size:31
Alignment explanation
Indices: 15949552--15949617 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
15949542 AGTTCATATC
15949552 TTTCACAATACTTTATAATATTTTTATAGTT
1 TTTCACAATACTTTATAATATTTTTATAGTT
*
15949583 TTTCACAATACTTTATAATATTTTTATGGTT
1 TTTCACAATACTTTATAATATTTTTATAGTT
15949614 TTTC
1 TTTC
15949618 TTTATTTCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.29, C:0.11, G:0.05, T:0.56
Consensus pattern (31 bp):
TTTCACAATACTTTATAATATTTTTATAGTT
Found at i:15949643 original size:19 final size:18
Alignment explanation
Indices: 15949629--15949700 Score: 65
Period size: 19 Copynumber: 3.9 Consensus size: 18
15949619 TTATTTCTAA
15949629 AATTTTCTAAAA-TTTAT
1 AATTTTCTAAAATTTTAT
* *
15949646 AATTTTCTATTATTTTTAT
1 AATTTTCTA-AAATTTTAT
*
15949665 AATTTTCTAAATTTATTAT
1 AATTTTCTAAAATT-TTAT
* *
15949684 AATATTATAATAATTTT
1 AATTTTCTAA-AATTTT
15949701 TAAATTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
17 9 0.20
18 5 0.11
19 28 0.62
20 3 0.07
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (18 bp):
AATTTTCTAAAATTTTAT
Found at i:15949645 original size:36 final size:35
Alignment explanation
Indices: 15949613--15949680 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
15949603 TTTTTATGGT
15949613 TTTTCT-TTATTTCTAAAATTTTCTAAAATTTATAA
1 TTTTCTATTATTTCTAAAATTTTCT-AAATTTATAA
* *
15949648 TTTTCTATTATTTTTATAATTTTCTAAATTTAT
1 TTTTCTATTATTTCTAAAATTTTCTAAATTTAT
15949681 TATAATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 14 0.47
36 16 0.53
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (35 bp):
TTTTCTATTATTTCTAAAATTTTCTAAATTTATAA
Found at i:15949660 original size:10 final size:10
Alignment explanation
Indices: 15949622--15949700 Score: 53
Period size: 10 Copynumber: 8.3 Consensus size: 10
15949612 TTTTTCTTTA
*
15949622 TTTCTAAAAT
1 TTTCTATAAT
15949632 TTTCTA-AA-
1 TTTCTATAAT
*
15949640 ATT-TATAAT
1 TTTCTATAAT
*
15949649 TTTCTATTAT
1 TTTCTATAAT
15949659 TTT-TATAAT
1 TTTCTATAAT
15949668 TTTCTA-AAT
1 TTTCTATAAT
15949677 TTAT-TATAAT
1 TT-TCTATAAT
* *
15949687 ATTATAATAAT
1 TTTCT-ATAAT
15949698 TTT
1 TTT
15949701 TAAATTTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
7 2 0.04
8 4 0.07
9 20 0.36
10 22 0.40
11 7 0.13
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTCTATAAT
Found at i:15949706 original size:8 final size:9
Alignment explanation
Indices: 15949641--15949707 Score: 57
Period size: 9 Copynumber: 7.1 Consensus size: 9
15949631 TTTTCTAAAA
15949641 TTTATAATT
1 TTTATAATT
*
15949650 TTCTATTATT
1 TT-TATAATT
15949660 TTTATAATT
1 TTTATAATT
15949669 TTCTA-AATT
1 TT-TATAATT
15949678 TATTATAATAT
1 T-TTATAAT-T
*
15949689 TATAATAATT
1 T-TTATAATT
15949699 TTTA-AATT
1 TTTATAATT
15949707 T
1 T
15949708 AAATAATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
8 5 0.10
9 19 0.39
10 16 0.33
11 9 0.18
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTATAATT
Found at i:15949707 original size:38 final size:35
Alignment explanation
Indices: 15949628--15949707 Score: 88
Period size: 38 Copynumber: 2.2 Consensus size: 35
15949618 TTTATTTCTA
* * *
15949628 AAATTTTCTAAAATTTATAATTTTCTATTATTTTT
1 AAATTTTCTAAAATTTATAATATTATATAATTTTT
*
15949663 ATAATTTTCTAAATTTATTATAATATTATAATAATTTTT
1 A-AATTTTCTAAA-AT-TTATAATATTAT-ATAATTTTT
15949702 AAATTT
1 AAATTT
15949708 AAATAATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 1 0.03
36 11 0.30
37 1 0.03
38 15 0.41
39 9 0.24
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (35 bp):
AAATTTTCTAAAATTTATAATATTATATAATTTTT
Found at i:15950872 original size:21 final size:23
Alignment explanation
Indices: 15950835--15950878 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
15950825 TGTTTTGATT
15950835 AATTCTATATTATTGTTA-ATTG
1 AATTCTATATTATTGTTATATTG
15950857 AATT-TATATT-TGTGTTATATTG
1 AATTCTATATTAT-TGTTATATTG
15950879 TTTCTGTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 1 0.05
21 11 0.55
22 8 0.40
ACGTcount: A:0.30, C:0.02, G:0.11, T:0.57
Consensus pattern (23 bp):
AATTCTATATTATTGTTATATTG
Found at i:15951431 original size:18 final size:18
Alignment explanation
Indices: 15951390--15951431 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
15951380 ATAATATTTA
15951390 TTTATTTATTTTATAAAT
1 TTTATTTATTTTATAAAT
**
15951408 AATATTTATTTT-TAATAT
1 TTTATTTATTTTATAA-AT
15951426 TTTATT
1 TTTATT
15951432 ATACTCTAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 2
0.76 0.16 0.08
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTATTTATTTTATAAAT
Found at i:15952074 original size:8 final size:8
Alignment explanation
Indices: 15952055--15952084 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
15952045 TGACATTATT
15952055 TAATTT-A
1 TAATTTAA
15952062 TAATTTAA
1 TAATTTAA
15952070 TAATTTAA
1 TAATTTAA
15952078 TAATTTA
1 TAATTTA
15952085 TTTGCCTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TAATTTAA
Found at i:15955643 original size:5 final size:5
Alignment explanation
Indices: 15955633--15955669 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
15955623 CCTTAAAGAA
15955633 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA
15955670 TAAAATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:15959674 original size:46 final size:48
Alignment explanation
Indices: 15959562--15959683 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 48
15959552 TGTCTTCGAC
** * *
15959562 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATACATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATAC--ATAAT
* * *
15959612 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCCATATA-AC-TGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATACATAAT
*
15959658 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
15959684 CTGTCCTGTC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 26 0.42
49 2 0.03
50 34 0.55
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATACATAAT
Found at i:15964413 original size:15 final size:15
Alignment explanation
Indices: 15964395--15964451 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
15964385 GGTTGCATAT
15964395 TACATAGCTCACACA
1 TACATAGCTCACACA
*
15964410 TACATAGCTCAGACA
1 TACATAGCTCACACA
* *
15964425 TAACTAGAGCTCACATA
1 T-AC-ATAGCTCACACA
*
15964442 TACACAGCTC
1 TACATAGCTC
15964452 GCATATTACA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 21 0.60
16 4 0.11
17 10 0.29
ACGTcount: A:0.39, C:0.30, G:0.11, T:0.21
Consensus pattern (15 bp):
TACATAGCTCACACA
Found at i:15964463 original size:16 final size:15
Alignment explanation
Indices: 15964354--15964468 Score: 54
Period size: 15 Copynumber: 7.4 Consensus size: 15
15964344 ACAAAACTAG
15964354 AGCTCGCATATACAC
1 AGCTCGCATATACAC
* * *
15964369 AGGTCAG-ATATATAG
1 AGCTC-GCATATACAC
* * *
15964384 AGGTTGCATATTACAT
1 AGCTCGCATA-TACAC
* * *
15964400 AGCTCACACATACAT
1 AGCTCGCATATACAC
*
15964415 AGCTCAGACATA-ACTAG
1 AGCTC-G-CATATAC-AC
*
15964432 AGCTCACATATACAC
1 AGCTCGCATATACAC
15964447 AGCTCGCATATTACAC
1 AGCTCGCATA-TACAC
*
15964463 AACTCG
1 AGCTCG
15964469 TTCTATTACA
Statistics
Matches: 75, Mismatches: 17, Indels: 15
0.70 0.16 0.14
Matches are distributed among these distances:
14 1 0.01
15 41 0.55
16 24 0.32
17 9 0.12
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (15 bp):
AGCTCGCATATACAC
Found at i:15964856 original size:52 final size:52
Alignment explanation
Indices: 15964722--15964954 Score: 209
Period size: 52 Copynumber: 4.5 Consensus size: 52
15964712 GATCGTAAGC
* * * * *
15964722 ACATTACATTGCAAGACAATTCATGCATTTAATGCAATGATC-GTTTGCATAA
1 ACATTACATTGCAAGATAGTTCATGCATTCAATGTAATGA-CAGTTCGCATAA
* * * * * * * *
15964774 AAATTATATTACAAAAAAAGTAT-ATGCATTCAATGTAAAGATAGTTCACATAA
1 ACATTACATTGC-AAGATAGT-TCATGCATTCAATGTAATGACAGTTCGCATAA
* * * *
15964827 ACATTACATTGTAAGATAGTTCATGCATTCAATGCAATGACATTTTGCATAA
1 ACATTACATTGCAAGATAGTTCATGCATTCAATGTAATGACAGTTCGCATAA
* * * * * *
15964879 ACATTACCTTACATGACAGTTCATGCAATCGATGTAATGACAGTTCGCATAA
1 ACATTACATTGCAAGATAGTTCATGCATTCAATGTAATGACAGTTCGCATAA
*
15964931 ACATTATATTGCAAGATAGTTCAT
1 ACATTACATTGCAAGATAGTTCAT
15964955 ATACCATTCC
Statistics
Matches: 138, Mismatches: 39, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
51 1 0.01
52 100 0.72
53 36 0.26
54 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32
Consensus pattern (52 bp):
ACATTACATTGCAAGATAGTTCATGCATTCAATGTAATGACAGTTCGCATAA
Found at i:15964950 original size:104 final size:105
Alignment explanation
Indices: 15964722--15964954 Score: 274
Period size: 105 Copynumber: 2.2 Consensus size: 105
15964712 GATCGTAAGC
* * * *
15964722 ACATTACATTGCAAGACAATTCATGCATTTAATGCAATGATCGTTTGCATAAAAATTATATTACA
1 ACATTACATTGCAAGATAGTTCATGCATTCAATGCAATGATCGTTTGCATAAAAATTACATTACA
* *
15964787 AAAAAAGTATATGCATTCAATGTAAAGATAGTTCACATAA
66 AAAAAAGTATATGCAATCAATGTAAAGACAGTTCACATAA
* * * *
15964827 ACATTACATTGTAAGATAGTTCATGCATTCAATGCAATGA-CATTTTGCATAAACATTACCTTAC
1 ACATTACATTGCAAGATAGTTCATGCATTCAATGCAATGATC-GTTTGCATAAAAATTACATTAC
** * * * *
15964891 -ATGACAGT-TCATGCAATCGATGTAATGACAGTTCGCATAA
65 AAAAAAAGTAT-ATGCAATCAATGTAAAGACAGTTCACATAA
*
15964931 ACATTATATTGCAAGATAGTTCAT
1 ACATTACATTGCAAGATAGTTCAT
15964955 ATACCATTCC
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
103 1 0.01
104 53 0.49
105 54 0.50
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32
Consensus pattern (105 bp):
ACATTACATTGCAAGATAGTTCATGCATTCAATGCAATGATCGTTTGCATAAAAATTACATTACA
AAAAAAGTATATGCAATCAATGTAAAGACAGTTCACATAA
Done.