Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 60 of 320
Found at i:17761506 original size:80 final size:81
Alignment explanation
Indices: 17761363--17761568 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 81
17761353 AAGTTTTTCG
* * *
17761363 CGGCGTTTTTGGTAACAAACGCCGCTATAAATCGAGCATTAGCGGC-ATTTTTATAAAAGCGCCA
1 CGGCGTTTTTAG-AA-AAACGCCGCTATAGATCGAGCATTAGCGGCGATTTTTAGAAAAGCGCCA
*
17761427 CTATAGATTGAGCATTAA
64 CTATAGATCGAGCATTAA
* ** * *
17761445 CGGCGTTTTTAGAAAAGCGCCGCTATAGATCGATAATTAGCGGCGCTTTTTGGAAAA-CGCCACT
1 CGGCGTTTTTAGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGATTTTTAGAAAAGCGCCACT
* *
17761509 ATAGATCGAGCTTTAG
66 ATAGATCGAGCATTAA
** *
17761525 CTACGTTTTTTA-AAAAACGCCGCCATAGAT-GAGCATTAGCGGCG
1 CGGCG-TTTTTAGAAAAACGCCGCTATAGATCGAGCATTAGCGGCG
17761569 TTAAAAAATG
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
79 12 0.11
80 65 0.62
81 17 0.16
82 11 0.10
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (81 bp):
CGGCGTTTTTAGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGATTTTTAGAAAAGCGCCACT
ATAGATCGAGCATTAA
Found at i:17761701 original size:40 final size:40
Alignment explanation
Indices: 17761628--17761715 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
17761618 AGCCTTAGTG
* * * * * * *
17761628 GCATTAGCGGCGCTTTTTGGAAAACGCCGCTATATATTGA
1 GCATTAGCAGCACTTTTTGAAAAACGACACTATAGATCGA
*
17761668 GCTTTAGCAGCACTTTTTGAAAAACGACACTATAGATCGA
1 GCATTAGCAGCACTTTTTGAAAAACGACACTATAGATCGA
17761708 GCATTAGC
1 GCATTAGC
17761716 GACGTTTTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (40 bp):
GCATTAGCAGCACTTTTTGAAAAACGACACTATAGATCGA
Found at i:17761725 original size:40 final size:39
Alignment explanation
Indices: 17761628--17761730 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 39
17761618 AGCCTTAGTG
* * * * * *
17761628 GCATTAGCGGCGCTTTTTGGAAAACGCCGCTATATATTGA
1 GCATTAGCGACG-TTTTTGAAAAACGACACTATAGATCGA
*
17761668 GCTTTAGCAGCAC-TTTTTGAAAAACGACACTATAGATCGA
1 GCATTAGC-G-ACGTTTTTGAAAAACGACACTATAGATCGA
*
17761708 GCATTAGCGACGTTTTTTAAAAA
1 GCATTAGCGACGTTTTTGAAAAA
17761731 ACGTCACAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
38 2 0.04
39 11 0.22
40 36 0.71
41 1 0.02
42 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (39 bp):
GCATTAGCGACGTTTTTGAAAAACGACACTATAGATCGA
Found at i:17761806 original size:154 final size:150
Alignment explanation
Indices: 17761480--17761847 Score: 445
Period size: 154 Copynumber: 2.4 Consensus size: 150
17761470 TAGATCGATA
* * *
17761480 ATTAGCGGCGCTTTTTGGAAAACGCCACTATAGATCGAGCTTTAGCTA-CGTTTTTTAAAAAACG
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGC-AGCGCTTTTTAAAAAACG
* * * * * * *
17761544 CCGCCATAGATGAGCATTAGCGGCGTTAAAAAATGCCGCAAATTATTTCATCAACACGCTGTCGT
65 ACACCATAGATGAGCATTAGCGACGTTAAAAAACGCCACAAATTAATTCATCAACACGCCGTCGT
17761609 TTTTTGTTGAGCCTTAGTGGC
130 TTTTTGTTGAGCCTTAGTGGC
* * *
17761630 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATATATTGAGCTTTAGCAGCACTTTTTGAAAAACGA
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCAGCGCTTTTTAAAAAACGA
* * *
17761695 CACTATAGATCGAGCATTAGCGACGTTTTTTAAAAAACGTCACAAATTAATTCATTAACACGCCG
66 CACCATAGAT-GAGCATTAGCGACG----TTAAAAAACGCCACAAATTAATTCATCAACACGCCG
*
17761760 TC-TTTTATT-TTTAGCCTTAGTGGC
126 TCGTTTT-TTGTTGAGCCTTAGTGGC
** * * * *
17761784 ATTAGCGGCGCTTTTTAAAAAACGCTGCTATAGATTGAGCTGTAGCGGCGCTTTTTCAAAAACG
1 ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCAGCGCTTTTTAAAAAACG
17761848 CCACAAAAAC
Statistics
Matches: 186, Mismatches: 25, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
149 1 0.01
150 64 0.34
151 13 0.07
154 74 0.40
155 34 0.18
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (150 bp):
ATTAGCGGCGCTTTTTGGAAAACGCCGCTATAGATTGAGCTTTAGCAGCGCTTTTTAAAAAACGA
CACCATAGATGAGCATTAGCGACGTTAAAAAACGCCACAAATTAATTCATCAACACGCCGTCGTT
TTTTGTTGAGCCTTAGTGGC
Found at i:17762232 original size:22 final size:22
Alignment explanation
Indices: 17762207--17762343 Score: 59
Period size: 22 Copynumber: 6.3 Consensus size: 22
17762197 GAGTTAATAT
17762207 TTTAAGGTTTATGAATTATGGG
1 TTTAAGGTTTATGAATTATGGG
* * ** *
17762229 TTTAGGGTTTAAGGGTT-GGGG
1 TTTAAGGTTTATGAATTATGGG
* **
17762250 TTTAAGATTTATGGGTTTAT-GG
1 TTTAAGGTTTAT-GAATTATGGG
* * * *
17762272 TTTATGAGTTAAT--ATTTTAAGG
1 TTTAAG-GTTTATGAATTAT-GGG
* *
17762294 TTTATGGATTATGAATTATGGG
1 TTTAAGGTTTATGAATTATGGG
* * *
17762316 TTTAGGGATTATGATTTAT-GG
1 TTTAAGGTTTATGAATTATGGG
17762337 TTTAAGG
1 TTTAAGG
17762344 GTTGAGTTTA
Statistics
Matches: 86, Mismatches: 22, Indels: 15
0.70 0.18 0.12
Matches are distributed among these distances:
20 3 0.03
21 24 0.28
22 51 0.59
23 8 0.09
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (22 bp):
TTTAAGGTTTATGAATTATGGG
Found at i:17762239 original size:29 final size:29
Alignment explanation
Indices: 17762207--17762322 Score: 74
Period size: 29 Copynumber: 4.0 Consensus size: 29
17762197 GAGTTAATAT
17762207 TTTAAGGTTTATGAATTATGGGTTTAGGG
1 TTTAAGGTTTATGAATTATGGGTTTAGGG
* ** ** * *
17762236 TTTAAGGGTTGGGGTTTA-AGATTTATGGG
1 TTTAAGGTTTATGAATTATGGGTTTA-GGG
* * ** *
17762265 TTTATGGTTTATGAGTTAAT-ATTTTAAGG
1 TTTAAGGTTTATGAATT-ATGGGTTTAGGG
* *
17762294 TTTATGGATTATGAATTATGGGTTTAGGG
1 TTTAAGGTTTATGAATTATGGGTTTAGGG
17762323 ATTATGATTT
Statistics
Matches: 62, Mismatches: 21, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
28 7 0.11
29 50 0.81
30 5 0.08
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
TTTAAGGTTTATGAATTATGGGTTTAGGG
Found at i:17762276 original size:7 final size:7
Alignment explanation
Indices: 17762151--17762340 Score: 58
Period size: 7 Copynumber: 26.4 Consensus size: 7
17762141 TTAATTATCA
*
17762151 TTATAGT
1 TTATGGT
*
17762158 TTAAGGT
1 TTATGGT
*
17762165 TTAGGGT
1 TTATGGT
*
17762172 ATATGGT
1 TTATGGT
* *
17762179 ATAGGGT
1 TTATGGT
17762186 TTATGAG-
1 TTATG-GT
17762193 TTATGAGT
1 TTATG-GT
* **
17762201 TAATATT
1 TTATGGT
*
17762208 TTAAGGT
1 TTATGGT
**
17762215 TTATGAA
1 TTATGGT
17762222 TTATGGGT
1 TTAT-GGT
*
17762230 TTAGGGT
1 TTATGGT
* *
17762237 TTAAGGG
1 TTATGGT
**
17762244 TTGGGGT
1 TTATGGT
* *
17762251 TTAAGAT
1 TTATGGT
17762258 TTATGGGT
1 TTAT-GGT
17762266 TTATGGT
1 TTATGGT
17762273 TTATGAGT
1 TTATG-GT
* **
17762281 TAATATT
1 TTATGGT
*
17762288 TTAAGGT
1 TTATGGT
*
17762295 TTATGGA
1 TTATGGT
**
17762302 TTATGAA
1 TTATGGT
17762309 TTATGGGT
1 TTAT-GGT
* *
17762317 TTAGGGA
1 TTATGGT
*
17762324 TTATGAT
1 TTATGGT
17762331 TTATGGT
1 TTATGGT
17762338 TTA
1 TTA
17762341 AGGGTTGAGT
Statistics
Matches: 128, Mismatches: 49, Indels: 12
0.68 0.26 0.06
Matches are distributed among these distances:
7 105 0.82
8 23 0.18
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:17762344 original size:22 final size:22
Alignment explanation
Indices: 17762292--17762340 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
17762282 AATATTTTAA
*
17762292 GGTTTATGGATTATGAATTATG
1 GGTTTAGGGATTATGAATTATG
*
17762314 GGTTTAGGGATTATGATTTAT-
1 GGTTTAGGGATTATGAATTATG
17762335 GGTTTA
1 GGTTTA
17762341 AGGGTTGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (22 bp):
GGTTTAGGGATTATGAATTATG
Found at i:17762494 original size:15 final size:15
Alignment explanation
Indices: 17762476--17762511 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
17762466 GGGCAGGGGC
17762476 TAAGGGTTAAGG-ATT
1 TAAGGGTTAAGGCA-T
17762491 TAAGGGTTAAGGCAT
1 TAAGGGTTAAGGCAT
17762506 TAAGGG
1 TAAGGG
17762512 GATAGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.33, C:0.03, G:0.36, T:0.28
Consensus pattern (15 bp):
TAAGGGTTAAGGCAT
Found at i:17762872 original size:22 final size:22
Alignment explanation
Indices: 17762809--17762872 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
17762799 AACTGATTGT
*
17762809 TTTTTAATTTATATTGTTTTTAA
1 TTTTTAATTTATATT-ATTTTAA
* * *
17762832 TTTTTAAATTAAATAATTTTAA
1 TTTTTAATTTATATTATTTTAA
17762854 TTTTTAATTTATATTATTT
1 TTTTTAATTTATATTATTT
17762873 AATCATTTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
22 22 0.65
23 12 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTAATTTATATTATTTTAA
Found at i:17763387 original size:6 final size:6
Alignment explanation
Indices: 17763378--17763407 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
17763368 CCATTCACAT
*
17763378 TCCCAC TCCCAC TCTCAC TCCCAC TCCCAC
1 TCCCAC TCCCAC TCCCAC TCCCAC TCCCAC
17763408 ATACTCATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.63, G:0.00, T:0.20
Consensus pattern (6 bp):
TCCCAC
Found at i:17766667 original size:19 final size:19
Alignment explanation
Indices: 17766613--17766667 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
17766603 ATTTAATCTA
17766613 ATTTTTATTATT--TATTTT
1 ATTTTTATT-TTAATATTTT
* *
17766631 AGTTTTGATTCTAA-ATTTT
1 A-TTTTTATTTTAATATTTT
17766650 ATTTTTATTTTAATATTT
1 ATTTTTATTTTAATATTT
17766668 AAGATAACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
18 12 0.41
19 17 0.59
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (19 bp):
ATTTTTATTTTAATATTTT
Found at i:17766971 original size:43 final size:43
Alignment explanation
Indices: 17766923--17767143 Score: 304
Period size: 43 Copynumber: 5.2 Consensus size: 43
17766913 GGTTATAATT
* *
17766923 TTTAGCGGCGTTTATGGGAAAAGCGTCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGTTC
* * *
17766966 TTTAGCGGCGTTTGTGGGAAAAGTGTCACTAAAGGTC-TATTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGTTC
*
17767008 TTTAGCGGCGTTTGTGGGAAAAGCG-CTGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTC-GCTAAAGGTCATGTTC
*
17767051 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGTTC
* * *
17767094 TTTAGTGGCGTTTGTGGTAAAAG-GATCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCG-TCGCTAAAGGTCATGTTC
*
17767137 TATAGCG
1 TTTAGCG
17767144 AAATTTTTTT
Statistics
Matches: 158, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
41 1 0.01
42 37 0.23
43 119 0.75
44 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGTTC
Found at i:17767066 original size:85 final size:86
Alignment explanation
Indices: 17766909--17767143 Score: 316
Period size: 85 Copynumber: 2.7 Consensus size: 86
17766899 AATATTCTTT
* * **
17766909 TAAAGGTTATAATT-TTTAGCGGCGTTTATGGGAAAAGCGTCGCTAAAGATCATGTTCTTTAGCG
1 TAAAGGTCAT-ATTCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCATGTTCTTTAGCG
* *
17766973 GCGTTTGTGGGAAAAGTGTCAC
65 GCGTTTGTGGGAAAAGCGCCAC
17766995 TAAAGGTC-TATTCTTTAGCGGCGTTTGTGGGAAAAGCG-CTGCTAAAGGCCATGTTCTTTAGCG
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCGTC-GCTAAAGGCCATGTTCTTTAGCG
*
17767058 GCGTTTGTGGGAAAAGCGCCGC
65 GCGTTTGTGGGAAAAGCGCCAC
* * * *
17767080 TAAAGGTCATGTTCTTTAGTGGCGTTTGTGGTAAAAG-GATCGCTAAAGGCCATGTTCTATAGCG
1 TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCG-TCGCTAAAGGCCATGTTCTTTAGCG
17767144 AAATTTTTTT
Statistics
Matches: 133, Mismatches: 11, Indels: 10
0.86 0.07 0.06
Matches are distributed among these distances:
84 4 0.03
85 74 0.56
86 54 0.41
87 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.31
Consensus pattern (86 bp):
TAAAGGTCATATTCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGCCATGTTCTTTAGCGG
CGTTTGTGGGAAAAGCGCCAC
Found at i:17767197 original size:15 final size:15
Alignment explanation
Indices: 17767173--17767225 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
17767163 TCGCAAAATG
*
17767173 TTAGCAGCGTTGTTT
1 TTAGCGGCGTTGTTT
**
17767188 TTAGCGGCGTTGCCT
1 TTAGCGGCGTTGTTT
*
17767203 TTAGCGGCATT-TTT
1 TTAGCGGCGTTGTTT
*
17767217 TTTGCGGCG
1 TTAGCGGCG
17767226 CCGCTATAGG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.09, C:0.19, G:0.30, T:0.42
Consensus pattern (15 bp):
TTAGCGGCGTTGTTT
Found at i:17767353 original size:22 final size:22
Alignment explanation
Indices: 17767311--17767353 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
17767301 TGTCGGAAAG
* *
17767311 ACACGGGCGTGTCCCTGTGTTC
1 ACACAGGCGTGTACCTGTGTTC
17767333 ACACAGGCGTGTGACCT-TGTT
1 ACACAGGCGTGT-ACCTGTGTT
17767354 TCATGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.14, C:0.28, G:0.30, T:0.28
Consensus pattern (22 bp):
ACACAGGCGTGTACCTGTGTTC
Found at i:17773824 original size:19 final size:17
Alignment explanation
Indices: 17773808--17773880 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 17
17773798 TTTATTTCAT
17773808 TTTTTCTCTTTTTTTTC
1 TTTTTCTCTTTTTTTTC
17773825 TTTTTCT-TTTTTTTT-
1 TTTTTCTCTTTTTTTTC
* *
17773840 TGTTTCT-TTGTTTTTTA
1 TTTTTCTCTT-TTTTTTC
* *
17773857 TTCTTCT-TTCTTTTTC
1 TTTTTCTCTTTTTTTTC
17773873 TATTTTCT
1 T-TTTTCT
17773881 TTCTTTTCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
15 8 0.17
16 20 0.43
17 19 0.40
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTC
Found at i:17773828 original size:18 final size:18
Alignment explanation
Indices: 17773788--17773882 Score: 59
Period size: 17 Copynumber: 5.0 Consensus size: 18
17773778 TTCTTCCCCC
17773788 TTTCTTCTTCTTTATTTCATTT
1 TTTC-TCTT-TTT-TTTC-TTT
17773810 TTTCTCTTTTTTTTC-TT
1 TTTCTCTTTTTTTTCTTT
* *
17773827 TTTCTTTTTTTTTTGTTT
1 TTTCTCTTTTTTTTCTTT
* * *
17773845 CTTTGT-TTTTTATTCTTC
1 -TTTCTCTTTTTTTTCTTT
*
17773863 TTTCTTTTTCTATTTTCTTT
1 TTTCTCTTT-T-TTTTCTTT
17773883 CTTTTCCTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
17 19 0.32
18 14 0.24
19 9 0.15
20 9 0.15
21 4 0.07
22 4 0.07
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTCTCTTTTTTTTCTTT
Found at i:17773830 original size:17 final size:16
Alignment explanation
Indices: 17773808--17773892 Score: 82
Period size: 17 Copynumber: 5.2 Consensus size: 16
17773798 TTTATTTCAT
17773808 TTTTTCTCTTTTTTTTC
1 TTTTTCT-TTTTTTTTC
17773825 TTTTTCTTTTTTTTT-
1 TTTTTCTTTTTTTTTC
* *
17773840 TGTTTCTTTGTTTTTTA
1 TTTTTCTTT-TTTTTTC
* *
17773857 TTCTTCTTTCTTTTTC
1 TTTTTCTTTTTTTTTC
* *
17773873 TATTTTCTTTCTTTTCC
1 T-TTTTCTTTTTTTTTC
17773890 TTT
1 TTT
17773893 CCCTTCCTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
15 8 0.14
16 22 0.38
17 28 0.48
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTC
Found at i:17773845 original size:21 final size:20
Alignment explanation
Indices: 17773816--17773888 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
17773806 ATTTTTTCTC
17773816 TTTTTTTTCTTTTTCTTTTT
1 TTTTTTTTCTTTTTCTTTTT
17773836 TTTTTGTTTCTTTGTT-TTTTAT
1 TTTTT-TTTCTTT-TTCTTTT-T
* *
17773858 TCTTCTTTCTTTTTCTATTTT
1 TTTTTTTTCTTTTTCT-TTTT
*
17773879 CTTTCTTTTC
1 -TTTTTTTTC
17773889 CTTTCCCTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
20 7 0.17
21 20 0.48
22 15 0.36
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (20 bp):
TTTTTTTTCTTTTTCTTTTT
Found at i:17773854 original size:32 final size:31
Alignment explanation
Indices: 17773788--17773888 Score: 89
Period size: 32 Copynumber: 3.1 Consensus size: 31
17773778 TTCTTCCCCC
*
17773788 TTTCTTCTTCTTTATTTCATTTTTTCTCTTTTT
1 TTTCTTCTTCTTT-TTT-TTTTTTTCTCTTTTT
*
17773821 TTTCTTTTTCTTTTTTTTTTGTTTCT-TTGTTT
1 TTTCTTCTTCTTTTTTTTTT-TTTCTCTT-TTT
* * *
17773853 TTTATTCTTCTTTCTTTTTCTATTT-TCTTTCT
1 TTTCTTCTTCTTT-TTTTT-TTTTTCTCTTTTT
17773885 TTTC
1 TTTC
17773889 CTTTCCCTTC
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
31 5 0.09
32 28 0.50
33 22 0.39
34 1 0.02
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (31 bp):
TTTCTTCTTCTTTTTTTTTTTTTCTCTTTTT
Found at i:17780994 original size:44 final size:44
Alignment explanation
Indices: 17780944--17781032 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
17780934 CAATAACATG
*
17780944 TGTCACATATATCATGAACTCATACCACAACTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
* *
17780988 TGTCACATATATCATGAACTCAGACCATAAGTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
17781032 T
1 T
17781033 CACATAGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCAGA
Found at i:17781010 original size:24 final size:24
Alignment explanation
Indices: 17780944--17781011 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 24
17780934 CAATAACATG
17780944 TGTCACATATATCATGAACTC--A
1 TGTCACATATATCATGAACTCAGA
** * **
17780966 TACCACA-A-CTCATGAGTTCAGA
1 TGTCACATATATCATGAACTCAGA
17780988 TGTCACATATATCATGAACTCAGA
1 TGTCACATATATCATGAACTCAGA
17781012 CCATAAGTCA
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
20 8 0.25
21 1 0.03
22 11 0.34
23 1 0.03
24 11 0.34
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.28
Consensus pattern (24 bp):
TGTCACATATATCATGAACTCAGA
Found at i:17783295 original size:21 final size:20
Alignment explanation
Indices: 17783263--17783301 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
17783253 ATTTAGCTCA
17783263 ATTTAATACAATTCATATTC
1 ATTTAATACAATTCATATTC
*
17783283 ATTTCAATCCAATTCATAT
1 ATTT-AATACAATTCATAT
17783302 CTTAGGCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAATACAATTCATATTC
Found at i:17783483 original size:19 final size:20
Alignment explanation
Indices: 17783442--17783485 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
17783432 AGCTCATGTA
*
17783442 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTAGAATCT
* *
17783462 TTTCATAAATTTTA-TATCT
1 TTTCATAAAATTTAGAATCT
17783481 TTTCA
1 TTTCA
17783486 ATTTAGTCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTCATAAAATTTAGAATCT
Found at i:17807026 original size:24 final size:24
Alignment explanation
Indices: 17806970--17807040 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
17806960 CTGTCAGGAG
* * *
17806970 AGGATTTACGAGTTGATAAAGGAT
1 AGGATTTAGGAGATGATAAGGGAT
17806994 AGGATTTAGGAGATGATAAGGGAT
1 AGGATTTAGGAGATGATAAGGGAT
17807018 AGGATTTAGGAGCA-GATAAGGGA
1 AGGATTTAGGAG-ATGATAAGGGA
17807041 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
24 42 0.98
25 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.35, T:0.24
Consensus pattern (24 bp):
AGGATTTAGGAGATGATAAGGGAT
Found at i:17808489 original size:27 final size:27
Alignment explanation
Indices: 17808449--17808560 Score: 113
Period size: 27 Copynumber: 4.1 Consensus size: 27
17808439 AGGAAGCGTC
*
17808449 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
17808476 CTGGTGGCTCTGCCACATATT-TCTG-T
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
17808502 TTCGGTGGCTCTGCCACGATTATCTGTAT
1 CT-GGTGGCTCTGCCACAATTATCTG-AT
* * * *
17808531 CTGGTGACTCTGTCAC-ATTATATGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
17808557 CTGG
1 CTGG
17808561 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 10 0.14
27 45 0.62
28 15 0.21
29 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:17819792 original size:21 final size:21
Alignment explanation
Indices: 17819768--17819812 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
17819758 GACACGATCA
*
17819768 TGTGGCTAAACCACACGCTTG
1 TGTGACTAAACCACACGCTTG
***
17819789 TGTGACTAAGTTACACGCTTG
1 TGTGACTAAACCACACGCTTG
17819810 TGT
1 TGT
17819813 ACGATAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (21 bp):
TGTGACTAAACCACACGCTTG
Found at i:17827061 original size:12 final size:12
Alignment explanation
Indices: 17827044--17827070 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
17827034 TAATTTTTAT
17827044 TTAGTTAATTAG
1 TTAGTTAATTAG
17827056 TTAGTTAATTAG
1 TTAGTTAATTAG
17827068 TTA
1 TTA
17827071 ACACTATAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
TTAGTTAATTAG
Found at i:17827259 original size:50 final size:49
Alignment explanation
Indices: 17827202--17827299 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 49
17827192 GTGTTTTAAT
17827202 TTATTTATCTTGCTTCCATTGTTGTGTTCTCCAAGCTTTTGTGAAAAAAA
1 TTATTTATCTTGCTTCCATTGTTGTGTTCTCCAAGCTTTTGT-AAAAAAA
17827252 TTATTTATCTTGCTTCCATTGTTGTGTTCTCCAAGCTTTTGTAAAAAA
1 TTATTTATCTTGCTTCCATTGTTGTGTTCTCCAAGCTTTTGTAAAAAA
17827300 GCTTTCTTCT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 6 0.12
50 42 0.88
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.47
Consensus pattern (49 bp):
TTATTTATCTTGCTTCCATTGTTGTGTTCTCCAAGCTTTTGTAAAAAAA
Found at i:17839524 original size:79 final size:79
Alignment explanation
Indices: 17839394--17839657 Score: 275
Period size: 79 Copynumber: 3.3 Consensus size: 79
17839384 GCTCCTCGTT
* * * *
17839394 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGA
17839459 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* *
17839473 CGAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACATAACCCGG
* *
17839537 ATTTAGTATCTCGCA
65 ATTTAATAACTCGCA
* * * * * **
17839552 CAAAGGCCTTCGGGGCTTAACCCAGAATTT-GTATCTCGCACAATTGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAACCC-GGATTTAGTAACTCGCACAA-TGCCTTCGGGA-CATAACCC
* * * *
17839615 GGATATATTCACTTAGCA
63 GGATTTAATAAC-TCGCA
*
17839633 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
17839658 CAGCATTCAA
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
78 25 0.16
79 61 0.39
80 57 0.37
81 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:17839539 original size:40 final size:39
Alignment explanation
Indices: 17839396--17839657 Score: 269
Period size: 40 Copynumber: 6.6 Consensus size: 39
17839386 TCCTCGTTCA
* * * *
17839396 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
17839435 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
17839474 GAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
17839513 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
17839553 AAAGGCCTTCGGGGCTTAACCCAGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCC-GGATTTAGTAACTCGCAC
** * * * *
17839593 AATTGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AA-TGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
17839634 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
17839658 CAGCATTCAA
Statistics
Matches: 192, Mismatches: 23, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
39 80 0.42
40 97 0.51
41 15 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:17842815 original size:40 final size:39
Alignment explanation
Indices: 17842778--17842955 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 39
17842768 ATATCCGGAC
17842778 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
17842818 TAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * *
17842858 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
17842898 TATAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGC
1 TA-AGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
17842938 TATGTCCGAAGGCATTTG
1 TAAGTCCGAAGGCATTTG
17842956 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 9 0.08
39 5 0.04
40 90 0.75
41 16 0.13
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:17842868 original size:80 final size:79
Alignment explanation
Indices: 17842772--17842955 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 79
17842762 GTGAATATAT
* *
17842772 CCGGACTAAGATCCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTA-AGCCCCGAAGGCCTT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTATAGCCCCGAAGG-CAT
*
17842835 TGTGCGAGATACTAAAT
63 TGTGCGAGATACTAAAA
* * * * *
17842852 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATAGTCCCGAAGGCATTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTATAGCCCCGAAGGCATTG
* *
17842917 TGTGAGTTACTAAAA
65 TGCGAGATACTAAAA
*
17842932 CCGGGCTATGTCCGAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTTG
17842956 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
79 13 0.15
80 62 0.70
81 13 0.15
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTATAGCCCCGAAGGCATTGT
GCGAGATACTAAAA
Found at i:17859161 original size:21 final size:21
Alignment explanation
Indices: 17859129--17859169 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
17859119 GAACATTTGG
17859129 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
17859150 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
17859170 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:17863423 original size:32 final size:32
Alignment explanation
Indices: 17863384--17863448 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
17863374 TACCCAAAGA
17863384 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
1 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
17863416 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
1 TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
17863448 T
1 T
17863449 TTTTTTGTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (32 bp):
TAGTTTTCTAGAATTTCTTAAAGATTTAATCT
Found at i:17863992 original size:20 final size:20
Alignment explanation
Indices: 17863969--17864032 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
17863959 ATCATTTTAA
17863969 TATTAAATTTAATAATAATT
1 TATTAAATTTAATAATAATT
* * *
17863989 TATTAAATTTGATAGTATTT
1 TATTAAATTTAATAATAATT
*
17864009 TATT-AATTTAATATTAAATT
1 TATTAAATTTAATAAT-AATT
17864029 TATT
1 TATT
17864033 TAAAATAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
19 9 0.24
20 28 0.76
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
TATTAAATTTAATAATAATT
Found at i:17864134 original size:33 final size:33
Alignment explanation
Indices: 17864092--17864158 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
17864082 ACAGAGAGTG
17864092 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
1 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
* *
17864125 TGATTCTTCCACTGCTCAACTGTCGAAAAACCA
1 TGATTCTTCCACTACTCAACTGCCGAAAAACCA
17864158 T
1 T
17864159 TACCGTCAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.31, G:0.10, T:0.27
Consensus pattern (33 bp):
TGATTCTTCCACTACTCAACTGCCGAAAAACCA
Found at i:17866186 original size:19 final size:18
Alignment explanation
Indices: 17866162--17866207 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
17866152 ATTTCCTCAA
* *
17866162 TTTCTTTTTCTTTTTTGTT
1 TTTCTTTTTCTCTTTT-AT
17866181 TTTCTTGTTTCTCTTTTAT
1 TTTCTT-TTTCTCTTTTAT
17866200 TTTCTTTT
1 TTTCTTTT
17866208 ATCAGTCGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 9 0.38
ACGTcount: A:0.02, C:0.13, G:0.04, T:0.80
Consensus pattern (18 bp):
TTTCTTTTTCTCTTTTAT
Found at i:17867319 original size:30 final size:30
Alignment explanation
Indices: 17867280--17867348 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
17867270 CATGTCCTGA
*
17867280 GGCTATGTCCTTCACACGGCTGAGACACAC
1 GGCTGTGTCCTTCACACGGCTGAGACACAC
17867310 GGCTGTGTCCTTCACACGGCTGAGACACAC
1 GGCTGTGTCCTTCACACGGCTGAGACACAC
*
17867340 GGCCGTGTC
1 GGCTGTGTC
17867349 TCTGCCCGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (30 bp):
GGCTGTGTCCTTCACACGGCTGAGACACAC
Found at i:17868474 original size:48 final size:48
Alignment explanation
Indices: 17868417--17868640 Score: 192
Period size: 48 Copynumber: 4.8 Consensus size: 48
17868407 CACATGGCAA
* *
17868417 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGAATCACATATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGAATCACATATC
* * * ** *
17868465 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGAATCACATATC
*
17868513 GATGCCAATGTCATGTCCCAGACT-TGGTCTTACAT-GATATCACATATC
1 GATGCCAATGCCATGTCCCAGA-TATGGTCTTACATGGA-ATCACATATC
* * * * * * * *
17868561 GATGTCGAT---A-G-CCCAGCTATGGTCTTATACGAAATTACATATT
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGAATCACATATC
* * * *
17868604 GATGCCAAAGCCATGTCTCAGACATGGTCTTAAATGG
1 GATGCCAATGCCATGTCCCAGATATGGTCTTACATGG
17868641 GATCGCACAT
Statistics
Matches: 135, Mismatches: 32, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
42 1 0.01
43 28 0.21
44 2 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 100 0.74
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGATATGGTCTTACATGGAATCACATATC
Found at i:17871024 original size:93 final size:93
Alignment explanation
Indices: 17870863--17871043 Score: 317
Period size: 93 Copynumber: 1.9 Consensus size: 93
17870853 GTGAGTTGGC
* **
17870863 TTTGTCAATCGATCTACAACAACCCATACATCATCTTTCTTTCTTGGTGTCAAAGGCAAACCCAT
1 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
17870928 CACAAAATCCATAGTAATATGGTTCGAA
66 CACAAAATCCATAGTAATATGGTTCGAA
*
17870956 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCGT
1 TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
*
17871021 CACAAAATCCATAGTTATATGGT
66 CACAAAATCCATAGTAATATGGT
17871044 CCCATTTCCA
Statistics
Matches: 83, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 83 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (93 bp):
TTTGTCAATCGATCTACAACAACCCATACAGCATCTTTCTTTCTCAGTGTCAAAGGCAAACCCAT
CACAAAATCCATAGTAATATGGTTCGAA
Found at i:17876429 original size:48 final size:48
Alignment explanation
Indices: 17876354--17876581 Score: 218
Period size: 48 Copynumber: 4.9 Consensus size: 48
17876344 CACATGGTAG
* *
17876354 GATGCCAATGCCATATCCTC-GATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCC-CAGACATGGTCTTACATGGGATCACATATC
* ** *
17876402 GTTGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * *
17876450 GATGCCAATGTCATGTCCCAGACTTGGTCTTACATGGTATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * **** *
17876498 GGTACCGAT---A-G-CCCAG-CTATGGTCTTACACAAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* *
17876541 GATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
17876582 GTACATAACC
Statistics
Matches: 140, Mismatches: 32, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
42 1 0.01
43 29 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 104 0.74
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:17888660 original size:26 final size:27
Alignment explanation
Indices: 17888631--17888692 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
17888621 TCTCATTCCT
*
17888631 ATTTTACCCCCACTAAAA-TTTTGACA
1 ATTTTACCACCACTAAAATTTTTGACA
* ** *
17888657 ATTTTACCATCGGTAAAATTTTTGACG
1 ATTTTACCACCACTAAAATTTTTGACA
17888684 ATTTTACCA
1 ATTTTACCA
17888693 TTGGTAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
ATTTTACCACCACTAAAATTTTTGACA
Found at i:17888687 original size:27 final size:27
Alignment explanation
Indices: 17888644--17888704 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
17888634 TTACCCCCAC
17888644 TAAAA-TTTTGACAATTTTACCATCGG
1 TAAAATTTTTGACAATTTTACCATCGG
* *
17888670 TAAAATTTTTGACGATTTTACCATTGG
1 TAAAATTTTTGACAATTTTACCATCGG
17888697 TAAAATTT
1 TAAAATTT
17888705 CAAGAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (27 bp):
TAAAATTTTTGACAATTTTACCATCGG
Found at i:17890996 original size:9 final size:9
Alignment explanation
Indices: 17890955--17890983 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
17890945 CTCAAAGAAT
17890955 AATTTATAA
1 AATTTATAA
17890964 AATTTATAA
1 AATTTATAA
17890973 AATTTATAA
1 AATTTATAA
17890982 AA
1 AA
17890984 AAAATTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTTATAA
Found at i:17899451 original size:43 final size:42
Alignment explanation
Indices: 17899380--17899496 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
17899370 AGGATTCCGT
* * *
17899380 TATCTGATTTCGTGTAAGACCACGTCTGGGACGTTGACATCAAC
1 TATCTGATTTCGTGTAAGACCATGTCTGGGACATCGACATC--C
*
17899424 T-TCTG-TTTACGTGTAAGACCATGTCTGGGACATCGACATCG
1 TATCTGATTT-CGTGTAAGACCATGTCTGGGACATCGACATCC
* *
17899465 TATCTGATTTCGTGTAAGACCCTGTCTAGGAC
1 TATCTGATTTCGTGTAAGACCATGTCTGGGAC
17899497 TGTGGCATCG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 27 0.42
43 35 0.55
44 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (42 bp):
TATCTGATTTCGTGTAAGACCATGTCTGGGACATCGACATCC
Found at i:17899506 original size:42 final size:43
Alignment explanation
Indices: 17899380--17899552 Score: 135
Period size: 43 Copynumber: 4.1 Consensus size: 43
17899370 AGGATTCCGT
*
17899380 TATCTGATTTCGTGTAAGACCACGTCTGGGAC-GTTGACATC-
1 TATCTGATTTCGTGTAAGACCACGTCTAGGACTGTTGACATCG
* * * * *
17899421 AACTTCTG-TTTACGTGTAAGACCATGTCTGGGAC-ATCGACATCG
1 TA--TCTGATTT-CGTGTAAGACCACGTCTAGGACTGTTGACATCG
*
17899465 TATCTGATTTCGTGTAAGACC-CTGTCTAGGACTG-TGGCATCG
1 TATCTGATTTCGTGTAAGACCAC-GTCTAGGACTGTTGACATCG
* * * * * *
17899507 ATGTTTGATTACATGTAAGACCACGTCTAGGA-TGTTGGCATTG
1 -TATCTGATTTCGTGTAAGACCACGTCTAGGACTGTTGACATCG
17899550 TAT
1 TAT
17899553 ATGTTCTCTA
Statistics
Matches: 106, Mismatches: 16, Indels: 19
0.75 0.11 0.13
Matches are distributed among these distances:
41 1 0.01
42 36 0.34
43 67 0.63
44 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (43 bp):
TATCTGATTTCGTGTAAGACCACGTCTAGGACTGTTGACATCG
Found at i:17901749 original size:411 final size:411
Alignment explanation
Indices: 17900987--17901815 Score: 1541
Period size: 411 Copynumber: 2.0 Consensus size: 411
17900977 ATAGTGTGAC
*
17900987 GAATCCTAACAATTAAATGTGCTTTTATATAGCAAATGGGTCCCGATCGAGTTGTAGCGGATGAT
1 GAATCCTAACAATTAAATGTGCTTTTATATAGCAAATGGGTCCCGATCGAGCTGTAGCGGATGAT
17901052 GTCAAAAGTAATGCGCCTACTCCCACGCAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
66 GTCAAAAGTAATGCGCCTACTCCCACGCAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
17901117 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
131 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
*
17901182 TTAGAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACAACAAGCTCCTGTTATGC
196 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACAACAAGCTCCTGTTATGC
*
17901247 CATCAGTGAATCCGGTTCAGATAAGTAATCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
261 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
* * *
17901312 GAGTTCTGAGCTACAATGAACGATGATGCTGAAAAGGCCGAGTTCTGGTTAGAGAACATGATCAG
326 GAGTTCTGAGCTACAACGAACGATGATACTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
17901377 AGTGTTTGATGAATTGTCTTT
391 AGTGTTTGATGAATTGTCTTT
17901398 GAATCCTAACAATTAAATGTGCTTTTATATAGCAAATGGGTCCCGATCGAGCTGTAGCGGATGAT
1 GAATCCTAACAATTAAATGTGCTTTTATATAGCAAATGGGTCCCGATCGAGCTGTAGCGGATGAT
* * *
17901463 GTCAAAAGTAATGCGCCTGCTCCCACGCAAGGGACGACACCATCCCATTCTAGATCGGCTATGAG
66 GTCAAAAGTAATGCGCCTACTCCCACGCAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
* *
17901528 TAGCCGTGATGGTGACGCTAGACAAGCCTTCTATCAGATGATGAACGATTGGTTTAGCCAATATA
131 TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
*
17901593 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACCACAAGCTCCTGTTATGC
196 TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACAACAAGCTCCTGTTATGC
*
17901658 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAATATTAGAAAGTATGGGGCTGAA
261 CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
17901723 GAGTTCTGAGCTACAACGAACGATGATACTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
326 GAGTTCTGAGCTACAACGAACGATGATACTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
17901788 AGTGTTTGATGAATTGTCTTT
391 AGTGTTTGATGAATTGTCTTT
17901809 GAATCCT
1 GAATCCT
17901816 GAGGAATGTA
Statistics
Matches: 405, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
411 405 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (411 bp):
GAATCCTAACAATTAAATGTGCTTTTATATAGCAAATGGGTCCCGATCGAGCTGTAGCGGATGAT
GTCAAAAGTAATGCGCCTACTCCCACGCAAAGGACGACACCATCCCATTCTAGACCGGCTATGAG
TAGCCGTGATGGTGACACTAGACAAGCCTTCAATCAGATGATGAACGATTGGTTTAGCCAATATA
TTAAAATCAATCCGGCTGTTCAAAAACCTCTACCCCGGTTAATTCACAACAAGCTCCTGTTATGC
CATCAGTGAATCCGGTTCAGATAAGTAACCCTCCAGTAGATAAGATTAGAAAGTATGGGGCTGAA
GAGTTCTGAGCTACAACGAACGATGATACTGAAAAGGCCGAGTTCTGGTTAGAGAACACGATCAG
AGTGTTTGATGAATTGTCTTT
Found at i:17903943 original size:35 final size:35
Alignment explanation
Indices: 17903897--17903964 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
17903887 TGCGAGAAGT
17903897 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
1 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
17903932 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAG
1 TGGTTTTCTAGGTCATATTGTATCAGCCTCTAG
17903965 TATCCGTGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (35 bp):
TGGTTTTCTAGGTCATATTGTATCAGCCTCTAGCA
Found at i:17910388 original size:27 final size:26
Alignment explanation
Indices: 17910354--17910419 Score: 114
Period size: 27 Copynumber: 2.5 Consensus size: 26
17910344 GAAATGACTG
17910354 TTATACCCCTATGAGGTAAATTACAA
1 TTATACCCCTATGAGGTAAATTACAA
*
17910380 TTATAACCCTTATGAGGTAAATTACAA
1 TTAT-ACCCCTATGAGGTAAATTACAA
17910407 TTATACCCCTATG
1 TTATACCCCTATG
17910420 TGATGTATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 12 0.32
27 25 0.68
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (26 bp):
TTATACCCCTATGAGGTAAATTACAA
Found at i:17913129 original size:8 final size:8
Alignment explanation
Indices: 17913111--17913140 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
17913101 AAGAAAATTA
17913111 TGTGTATTT
1 TGTG-ATTT
17913120 TGTGATTT
1 TGTGATTT
17913128 TGTGATTT
1 TGTGATTT
17913136 TGTGA
1 TGTGA
17913141 ATTAGGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:17914796 original size:26 final size:26
Alignment explanation
Indices: 17914760--17914813 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
17914750 AGAAGGAAGG
*
17914760 TGATTAAACATTACTCATACTCTCTT
1 TGATGAAACATTACTCATACTCTCTT
17914786 TGATGAAACATTACTCATACTCTCTT
1 TGATGAAACATTACTCATACTCTCTT
17914812 TG
1 TG
17914814 CATGTAGATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (26 bp):
TGATGAAACATTACTCATACTCTCTT
Found at i:17915821 original size:17 final size:18
Alignment explanation
Indices: 17915799--17915832 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
17915789 TCCTTGTCAT
17915799 TCATTGACAA-TTTTATG
1 TCATTGACAACTTTTATG
*
17915816 TCATTGATAACTTTTAT
1 TCATTGACAACTTTTAT
17915833 TAATTCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (18 bp):
TCATTGACAACTTTTATG
Found at i:17924066 original size:4 final size:4
Alignment explanation
Indices: 17924057--17924094 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
17924047 CATATTTGAA
17924057 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
17924095 CACTTATATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:17928557 original size:13 final size:13
Alignment explanation
Indices: 17928539--17928563 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17928529 TGGTCATCAT
17928539 GGTGTGAACACAA
1 GGTGTGAACACAA
17928552 GGTGTGAACACA
1 GGTGTGAACACA
17928564 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:17937472 original size:23 final size:22
Alignment explanation
Indices: 17937441--17937483 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
17937431 TATCCATCAA
*
17937441 AAACATCCAATATTTATTAATGG
1 AAACATCCAAAATTT-TTAATGG
*
17937464 AAACTTCCAAAATTTTTAAT
1 AAACATCCAAAATTTTTAAT
17937484 AAAATAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (22 bp):
AAACATCCAAAATTTTTAATGG
Found at i:17945458 original size:47 final size:48
Alignment explanation
Indices: 17945389--17945514 Score: 164
Period size: 48 Copynumber: 2.6 Consensus size: 48
17945379 GTTACATGTT
*
17945389 TAACCGTGATATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* * * * * *
17945436 TAACCGTGGCATATCCGCTTAGCATCACATTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
* *
17945484 TAATCGTGGTATATCCACTTAGCAGCACGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTT
17945515 TTTTCATTCC
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 27 0.41
48 39 0.59
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATG
Found at i:17950899 original size:43 final size:43
Alignment explanation
Indices: 17950813--17950915 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
17950803 TGATTACCTA
* * * *
17950813 TAAGACCATGTCTGGTATATTGGCATTGCATTGAGATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATTGCATTAAAATTACGTG
*
17950856 TAAGACCATGTCTGGGACATTGGCA-T-CATTAATCAATTTCGTG
1 TAAGACCATGTCTGGGACATTGGCATTGCATTAA--AATTACGTG
* *
17950899 TAAGACCCTATCTGGGA
1 TAAGACCATGTCTGGGA
17950916 TAATGGCGTC
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
41 5 0.10
42 1 0.02
43 45 0.88
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATTGCATTAAAATTACGTG
Found at i:17953371 original size:46 final size:46
Alignment explanation
Indices: 17953304--17953477 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
17953294 TATTTGGGCA
17953304 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* * *
17953350 TCCGAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-T--G
* * *
17953395 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
* *
17953443 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
17953478 GGGCGGGTTA
Statistics
Matches: 109, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 7 0.06
44 1 0.01
45 1 0.01
46 62 0.57
47 27 0.25
48 1 0.01
49 1 0.01
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATG
Found at i:17953459 original size:93 final size:93
Alignment explanation
Indices: 17953300--17953471 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
17953290 GGGATATTTG
* *
17953300 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
17953365 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
17953393 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
17953458 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
17953472 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:17956447 original size:15 final size:15
Alignment explanation
Indices: 17956427--17956482 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
17956417 GTATCTTGGG
17956427 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
17956442 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
17956457 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
17956472 TTTCTTTATTC
1 TTTCTTTATTC
17956483 AATTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:17958950 original size:46 final size:45
Alignment explanation
Indices: 17958883--17959058 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
17958873 TATTTGGGCA
17958883 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
17958929 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
17958976 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
17959022 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
17959059 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:17959038 original size:93 final size:93
Alignment explanation
Indices: 17958879--17959050 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
17958869 GGGATATTTG
* *
17958879 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
17958944 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
17958972 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
17959037 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
17959051 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:17978070 original size:40 final size:40
Alignment explanation
Indices: 17978005--17978215 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
17977995 TCTTCGGAAT
* * * *
17978005 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
17978044 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
17978084 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
17978124 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
17978164 TTAACCCGGATAAAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
17978204 TTAGCCCGGATA
1 TTAGCCCGGATA
17978216 TCATTCAAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 142 0.94
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:17985787 original size:42 final size:42
Alignment explanation
Indices: 17985663--17985823 Score: 180
Period size: 42 Copynumber: 3.8 Consensus size: 42
17985653 CACACAGTAC
*
17985663 CATACCAATGCCATATCCCAGATATGGTCTTACATG-GGATCT
1 CATACCAATGCCATATCCCAGATATGGTCTTACATGAAG-TCT
* * * * * *
17985705 CATACCGATGCCAATAGCCCAGCTATGGCCTTATACGAAGTCT
1 CATACCAATGCC-ATATCCCAGATATGGTCTTACATGAAGTCT
* * *
17985748 CATATCAATGTCATATCCTAGATATGGTCTTACATGAAGTCT
1 CATACCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
** *
17985790 CATACTGATGCCATATCCTAGATATGGTCTTACA
1 CATACCAATGCCATATCCCAGATATGGTCTTACA
17985824 CGTAGTCTTA
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 65 0.67
43 31 0.32
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
CATACCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
Found at i:17989110 original size:63 final size:63
Alignment explanation
Indices: 17989024--17989153 Score: 206
Period size: 63 Copynumber: 2.1 Consensus size: 63
17989014 CAACCTAATT
* * * *
17989024 TATAACTTAAATTTGGTAATTCAAGCTCAATTAAGATGCGCCTCATTCTTGATGTGATAAGGA
1 TATAACTTAAATTTGGTAATTCAAACTCAATTAAGATGCCCCTCATTCCTGATGTGATAAGAA
* *
17989087 TATAACTTAAATTTGGTATTTCAAACTCTATTAAGATGCCCCTCATTCCTGATGTGATAAGAA
1 TATAACTTAAATTTGGTAATTCAAACTCAATTAAGATGCCCCTCATTCCTGATGTGATAAGAA
17989150 TATA
1 TATA
17989154 TCCATGTGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (63 bp):
TATAACTTAAATTTGGTAATTCAAACTCAATTAAGATGCCCCTCATTCCTGATGTGATAAGAA
Found at i:17993469 original size:7 final size:7
Alignment explanation
Indices: 17993457--17993496 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
17993447 TTTTATCTTG
17993457 AACCTTA
1 AACCTTA
17993464 AACCTTA
1 AACCTTA
17993471 AACCTTA
1 AACCTTA
* *
17993478 AATCTTG
1 AACCTTA
*
17993485 AACCTTG
1 AACCTTA
17993492 AACCT
1 AACCT
17993497 CGAACCTCGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.30
Consensus pattern (7 bp):
AACCTTA
Found at i:17993501 original size:7 final size:7
Alignment explanation
Indices: 17993484--17993516 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
17993474 CTTAAATCTT
*
17993484 GAACCTT
1 GAACCTC
17993491 GAACCTC
1 GAACCTC
17993498 GAACCTC
1 GAACCTC
17993505 GAACCTC
1 GAACCTC
17993512 GAACC
1 GAACC
17993517 CTAAAATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.30, C:0.39, G:0.15, T:0.15
Consensus pattern (7 bp):
GAACCTC
Found at i:17993501 original size:14 final size:14
Alignment explanation
Indices: 17993456--17993521 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 14
17993446 ATTTTATCTT
*
17993456 GAACCTTAAACCTT
1 GAACCTTAAACCTC
* * *
17993470 AAACCTTAAATCTT
1 GAACCTTAAACCTC
*
17993484 GAACCTTGAACCTC
1 GAACCTTAAACCTC
**
17993498 GAACCTCGAACCTC
1 GAACCTTAAACCTC
*
17993512 GAACCCTAAA
1 GAACCTTAAA
17993522 ATTTAGGGTT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 42 1.00
ACGTcount: A:0.36, C:0.32, G:0.09, T:0.23
Consensus pattern (14 bp):
GAACCTTAAACCTC
Found at i:17993559 original size:7 final size:7
Alignment explanation
Indices: 17993543--17993603 Score: 72
Period size: 7 Copynumber: 9.0 Consensus size: 7
17993533 GGGTTTCAGA
*
17993543 TTTAATG
1 TTTAAGG
17993550 TTTAAGG
1 TTTAAGG
*
17993557 TTTAAAG
1 TTTAAGG
*
17993564 TTTAGGG
1 TTTAAGG
17993571 TTTAAGG
1 TTTAAGG
17993578 TTT-AGG
1 TTTAAGG
17993584 TTT-AGG
1 TTTAAGG
*
17993590 TTTAGGG
1 TTTAAGG
17993597 TTTAAGG
1 TTTAAGG
17993604 GTTTGGGATT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
6 12 0.26
7 34 0.74
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (7 bp):
TTTAAGG
Found at i:17993587 original size:13 final size:14
Alignment explanation
Indices: 17993543--17993603 Score: 81
Period size: 14 Copynumber: 4.5 Consensus size: 14
17993533 GGGTTTCAGA
* *
17993543 TTTAATGTTTAAGG
1 TTTAAGGTTTAGGG
*
17993557 TTTAAAGTTTAGGG
1 TTTAAGGTTTAGGG
17993571 TTTAAGGTTTA-GG
1 TTTAAGGTTTAGGG
17993584 TTT-AGGTTTAGGG
1 TTTAAGGTTTAGGG
17993597 TTTAAGG
1 TTTAAGG
17993604 GTTTGGGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 7 0.17
13 10 0.24
14 25 0.60
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:17999428 original size:42 final size:42
Alignment explanation
Indices: 17999382--17999503 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 42
17999372 ATGACTCTAC
*
17999382 CCCAGACAGGGTCTTACACGAA-CTCAGATACGATGCCAATGT
1 CCCAGACACGGTCTTACACGAATCTCAGAT-CGATGCCAATGT
** * * * *
17999424 CCCAGACATTGTCTTACACGTAAATCTCAAATTGAGGCCTATGT
1 CCCAGACACGGTCTTACACG--AATCTCAGATCGATGCCAATGT
*
17999468 CCAAGACACGGTCTTACACGATATCTCAGATCGATG
1 CCCAGACACGGTCTTACACGA-ATCTCAGATCGATG
17999504 ACAACGTTCC
Statistics
Matches: 64, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
42 19 0.30
43 11 0.17
44 28 0.44
45 6 0.09
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
CCCAGACACGGTCTTACACGAATCTCAGATCGATGCCAATGT
Found at i:18004263 original size:15 final size:15
Alignment explanation
Indices: 18004243--18004272 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
18004233 ATTCTCTTGG
18004243 TCAGCAGATTCAGAA
1 TCAGCAGATTCAGAA
18004258 TCAGCAGATTCAGAA
1 TCAGCAGATTCAGAA
18004273 CAATCTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TCAGCAGATTCAGAA
Found at i:18006545 original size:42 final size:43
Alignment explanation
Indices: 18006490--18006611 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 43
18006480 ACGCCTCTGC
* *
18006490 CCCAGACAGGGTCTTACACGAA-CTCAGATACGATGTC-GATGT
1 CCCAGACATGGTCTTACACGAATCTCAGATACGATGCCTG-TGT
* *
18006532 CCCAGACATGGTCTTACATGTAAATCTCA-A-ACCGAGGCCTGTGT
1 CCCAGACATGGTCTTACACG--AATCTCAGATA-CGATGCCTGTGT
18006576 CCCAGACATGGTCTTACACGATATCTCAGAT-CGATG
1 CCCAGACATGGTCTTACACGA-ATCTCAGATACGATG
18006612 ACAACGTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
42 19 0.29
43 11 0.17
44 31 0.47
45 5 0.08
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (43 bp):
CCCAGACATGGTCTTACACGAATCTCAGATACGATGCCTGTGT
Found at i:18006856 original size:27 final size:27
Alignment explanation
Indices: 18006825--18006887 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
18006815 TGGACTTCCT
*
18006825 TCGATCTAAGTCTGATTTTCTTTGTTC
1 TCGATCTAAGTCCGATTTTCTTTGTTC
18006852 TCGATCTAAGTCCGATTTTCTTTGTTC
1 TCGATCTAAGTCCGATTTTCTTTGTTC
*
18006879 TTGATCTAA
1 TCGATCTAA
18006888 TACAATTCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.49
Consensus pattern (27 bp):
TCGATCTAAGTCCGATTTTCTTTGTTC
Found at i:18016828 original size:37 final size:37
Alignment explanation
Indices: 18016787--18016865 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
18016777 TTATTACGAA
* * * *
18016787 GTCTTACCCGGATATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
18016824 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
18016861 GTCTT
1 GTCTT
18016866 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:18017062 original size:47 final size:47
Alignment explanation
Indices: 18016984--18017658 Score: 1116
Period size: 47 Copynumber: 14.2 Consensus size: 47
18016974 CCCTTCGGGA
* * * * * *
18016984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18017031 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017078 CTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18017125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017172 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017219 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017268 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017315 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017364 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18017411 CTTATCATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18017458 CTTATCACATATATATACACTTTCACATTTATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18017507 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017554 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18017601 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18017648 CTTATCACATA
1 CTTATCACATA
18017659 GAATCCTAAA
Statistics
Matches: 593, Mismatches: 29, Indels: 12
0.94 0.05 0.02
Matches are distributed among these distances:
47 456 0.77
49 137 0.23
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18017086 original size:22 final size:22
Alignment explanation
Indices: 18017059--18017134 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
18017049 TTTCACATTC
18017059 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
18017081 ATCACATATATCCACTTTCACATT
1 ATCACAT-CGGCCA-TTAGGCCTT
18017105 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
18017128 ATCACAT
1 ATCACAT
18017135 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:18017300 original size:143 final size:141
Alignment explanation
Indices: 18016984--18017658 Score: 1089
Period size: 143 Copynumber: 4.7 Consensus size: 141
18016974 CCCTTCGGGA
* * * * * * * **
18016984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACAC
*
18017049 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATCCACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
18017114 GGCCATTAGGC
131 GGCCATTAGGC
18017125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACAC
18017190 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
18017255 TCGGCTATTAGGC
129 TCGGCCATTAGGC
* *
18017268 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-C-CACATATATAC
* *
18017333 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
18017398 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* * *
18017411 CTTATCATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-C-CACATATATAC
* *
18017476 ACTTTCACATTTATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
18017541 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
18017554 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACAC
*
18017619 TTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
18017659 GAATCCTAAA
Statistics
Matches: 505, Mismatches: 25, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
141 144 0.29
143 312 0.62
144 1 0.00
145 48 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:18020181 original size:40 final size:40
Alignment explanation
Indices: 18020149--18020412 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
18020139 CCAACATGAT
* * * *
18020149 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
18020189 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
18020229 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
18020269 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
18020309 TGCTCTTCGGAACTTAGCCCGGATACATCAATAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * * *
18020349 TGCTCTTTGGGACTTGGCCCGGTTATAGTAACTCAG-ACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACT-AGCACGAA
*
18020390 TGC-CTTCGGGACTTAACCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
18020413 TTAGTAACTC
Statistics
Matches: 192, Mismatches: 30, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
40 181 0.94
41 9 0.05
42 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:18020418 original size:40 final size:40
Alignment explanation
Indices: 18020153--18020530 Score: 197
Period size: 40 Copynumber: 9.5 Consensus size: 40
18020143 CATGATTGCT
* * *
18020153 CTTCGGGACCTAGCCCGGA--TA-TAACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACAAATGC
** * * * * *
18020192 TCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * * **
18020232 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
** * * *
18020272 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* ** * **
18020312 TCTTCGGAACTTAGCCCGGATACA-TCAA-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATTTAGT-AACTCGCACAAATGC
* *
18020352 TCTTTGGGACTTGGCCCGG-TTATAGTAACTCAG-ACAAATGC
1 -CTTCGGGACTTAGCCCGGATT-TAGTAACTC-GCACAAATGC
* * *
18020393 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAACGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
*
18020433 CTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
18020472 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GC
1 CTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
*
18020512 CTTCGGTACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
18020531 CATCATTCGA
Statistics
Matches: 282, Mismatches: 43, Indels: 26
0.80 0.12 0.07
Matches are distributed among these distances:
38 2 0.01
39 34 0.12
40 219 0.78
41 21 0.07
42 6 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:18020437 original size:120 final size:118
Alignment explanation
Indices: 18020149--18020450 Score: 270
Period size: 120 Copynumber: 2.5 Consensus size: 118
18020139 CCAACATGAT
* * * * * * ** *
18020149 TGCTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACTTAACCCGGATACATA-ACTAGCACCAACGCTCTTC-GGACTTAGCCCGGAT
* * *
18020213 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
64 ACATCAATAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCA-GAA
* * * *
18020269 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAACCCGGATACATAACTAGCACCAACGCTCTTCGG-ACTTAGCCCGGATA
* * * * * *
18020334 CATCAATAGCATGAATGCTCTTTGGGACTTGGCCCGGTTATAGTAACTCAGACA-AA
65 CATCAATAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TAACT-AG-CAGAA
** * *
18020390 TGC-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAACGC-CTTCGGGCTTAGCCCGGA
1 TGCTCTTCGGGACTTAACCCGGATACA-TAACTAGCACCAACGCTCTTCGGACTTAGCCCGGA
18020451 ATTAGTAACT
Statistics
Matches: 152, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
119 13 0.09
120 114 0.75
121 21 0.14
122 2 0.01
123 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (118 bp):
TGCTCTTCGGGACTTAACCCGGATACATAACTAGCACCAACGCTCTTCGGACTTAGCCCGGATAC
ATCAATAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCAGAA
Found at i:18020460 original size:39 final size:40
Alignment explanation
Indices: 18020374--18020477 Score: 149
Period size: 39 Copynumber: 2.6 Consensus size: 40
18020364 GGCCCGGTTA
*
18020374 TAGTAACTCAG-ACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTC-GCACAAATGCCTTCGGGACTTAACCCGGAAT
* * *
18020414 TAGTAACTCGCACCAACGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
18020453 TAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
18020478 ATCTTAGTCC
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 35 0.61
40 22 0.39
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:18020514 original size:79 final size:80
Alignment explanation
Indices: 18020374--18020530 Score: 187
Period size: 79 Copynumber: 2.0 Consensus size: 80
18020364 GGCCCGGTTA
* * *
18020374 TAGTAACTCAGACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAACGCCTTCGG
1 TAGTAACTCAGACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGG
*
18020439 -GCTTAGCCCGGAAT
66 TACTTAGCCCGGAAT
** * *
18020453 TAGTAACTC-GCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTT
1 TAGTAACTCAG-ACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTT
18020515 CGGTACTTAGCCCGGA
63 CGGTACTTAGCCCGGA
18020531 CATCATTCGA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.06
79 47 0.71
80 15 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGTAACTCAGACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGG
TACTTAGCCCGGAAT
Found at i:18022446 original size:37 final size:37
Alignment explanation
Indices: 18022385--18022463 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
18022375 TTATTACGAA
** * *
18022385 GTCTTACCCGGACGTAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
18022422 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
18022459 GTCTT
1 GTCTT
18022464 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:18022660 original size:47 final size:47
Alignment explanation
Indices: 18022582--18023060 Score: 736
Period size: 47 Copynumber: 10.2 Consensus size: 47
18022572 CCCTTCGGGA
* * * * * *
18022582 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18022629 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18022676 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18022723 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18022770 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18022819 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18022866 CTTATCACATATATACACTTTCACATTCATCACATCGGCC-TTA---
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18022909 -TCA-CATATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
18022954 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18023003 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18023050 CTTATCACATA
1 CTTATCACATA
18023061 GAATCCTAAA
Statistics
Matches: 397, Mismatches: 25, Indels: 20
0.90 0.06 0.05
Matches are distributed among these distances:
41 33 0.08
42 5 0.01
46 5 0.01
47 264 0.66
49 90 0.23
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18022816 original size:96 final size:96
Alignment explanation
Indices: 18022582--18023060 Score: 739
Period size: 96 Copynumber: 5.1 Consensus size: 96
18022572 CCCTTCGGGA
* * * * * * *
18022582 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
18022645 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
18022676 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
18022739 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
18022770 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
18022835 ACTTTCACATTTATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
18022866 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCC-TTA----TCA-CATATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
18022923 ACTTTTACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
18022954 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
18023019 ACTTTCACATTTATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
18023050 CTTATCACATA
1 CTTATCACATA
18023061 GAATCCTAAA
Statistics
Matches: 353, Mismatches: 20, Indels: 22
0.89 0.05 0.06
Matches are distributed among these distances:
88 47 0.13
89 2 0.01
90 30 0.08
91 3 0.01
93 4 0.01
94 123 0.35
95 2 0.01
96 142 0.40
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18022933 original size:41 final size:41
Alignment explanation
Indices: 18022863--18023042 Score: 170
Period size: 49 Copynumber: 4.1 Consensus size: 41
18022853 TCGGCCATTA
18022863 GGCCTTATCAC--ATATATACACTTTCACATTCATCACATC
1 GGCCTTATCACATATATATACACTTTCACATTCATCACATC
*
18022902 GGCCTTATCACATATATATACACTTTTACATTCATCACATCGGCC
1 GGCCTTATCACATATATATACACTTTCACATTCATCACAT----C
18022947 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGAC
1 ----GGCCTTATCACATATATATACACTTTCACATTCATCACAT---C
*
18022995 TATTAGGCCTTATCAC--ATATATACACTTTCACATTTATCACATC
1 -----GGCCTTATCACATATATATACACTTTCACATTCATCACATC
18023039 GGCC
1 GGCC
18023043 ATTAGGCCTT
Statistics
Matches: 125, Mismatches: 5, Indels: 22
0.82 0.03 0.14
Matches are distributed among these distances:
39 15 0.12
41 26 0.21
44 1 0.01
45 1 0.01
47 26 0.21
48 2 0.02
49 54 0.43
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (41 bp):
GGCCTTATCACATATATATACACTTTCACATTCATCACATC
Found at i:18023000 original size:184 final size:187
Alignment explanation
Indices: 18022582--18023060 Score: 779
Period size: 184 Copynumber: 2.6 Consensus size: 187
18022572 CCCTTCGGGA
* * * * * * * *
18022582 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
*
18022645 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
18022710 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTA---CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18022770 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
18022835 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
18022900 TCGGCC-TTA-TCA-CATATATATACACTTTTACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTACTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
18022954 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
18023019 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
66 ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATA
18023061 GAATCCTAAA
Statistics
Matches: 276, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
184 146 0.53
185 2 0.01
188 10 0.04
189 4 0.01
190 114 0.41
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (187 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
ACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTACTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18025471 original size:52 final size:51
Alignment explanation
Indices: 18025354--18025481 Score: 168
Period size: 52 Copynumber: 2.5 Consensus size: 51
18025344 AGATGCCCGA
* * *
18025354 TGGCCTGCACATAGTACCACCCTTGTAGTCAAAGATACCTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACACTTGTAGCCAAAGATACCTTCTTCACAAAG
* * * *
18025405 TGACCTTCACATAGTACCACACTTGT-GACCAAAGCTATCTTTCTTCACAATG
1 TGGCCTTCACATAGTACCACACTTGTAG-CCAAAGATA-CCTTCTTCACAAAG
18025457 TGGCCTTCACATAGTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
18025482 AGTCACTAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 1 0.01
51 30 0.45
52 36 0.54
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTAGCCAAAGATACCTTCTTCACAAAG
Found at i:18042429 original size:26 final size:26
Alignment explanation
Indices: 18042399--18042506 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
18042389 TGAAATTCCC
*
18042399 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
18042425 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
18042451 ATCATGAAACATTTACCTAGCCCATT
1 ATCATGAAACATTTACCTAACCCATT
* *
18042477 ATCATGGAACATTTAGCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
18042503 ATCA
1 ATCA
18042507 ATTTGTAGCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:18046416 original size:50 final size:50
Alignment explanation
Indices: 18046341--18046440 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
18046331 CTTCTCCATA
18046341 CTTAAACAAATTCGACTTGAACATATATATACAAGCAATAGTTCAATTCG
1 CTTAAACAAATTCGACTTGAACATATATATACAAGCAATAGTTCAATTCG
18046391 CTTAAACAAATTCGACTTGAACATATATATACAAGCAATAGTTCAATTCG
1 CTTAAACAAATTCGACTTGAACATATATATACAAGCAATAGTTCAATTCG
18046441 ACACAAATAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (50 bp):
CTTAAACAAATTCGACTTGAACATATATATACAAGCAATAGTTCAATTCG
Found at i:18047917 original size:20 final size:21
Alignment explanation
Indices: 18047892--18047931 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
18047882 TCCTTAAGAT
18047892 AGGGC-ACACGCCCGTGTGAA
1 AGGGCAACACGCCCGTGTGAA
*
18047912 AGGGCAACACGCCTGTGTGA
1 AGGGCAACACGCCCGTGTGA
18047932 CCAACTCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGAA
Found at i:18049040 original size:46 final size:46
Alignment explanation
Indices: 18048934--18049157 Score: 152
Period size: 46 Copynumber: 4.8 Consensus size: 46
18048924 TGGGTAAGGT
** * * *
18048934 GTCGATGCCATGTCCCAGACATGGTCTTACACTCACTATCATCTCGTA-
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGTCTC-AAG
*
18048982 G-CGGATGTATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCAAG
1 GTC-GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCAAG
* * * *
18049028 G-CTGATGGATGTCCCAGATATGTCTTACACTAGCTCTCGTCTCAAT
1 GTC-GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAG
* * * * *
18049074 GTCAATGCCATGTCCCAGACATGGTCTTACACTGGATCTCATAAT-ATG
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCAAG
* * * * *
18049122 GCCGGTACATGTCCCAAACATGTCTTACACTAGCTC
1 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTC
18049158 ACAAACAAAT
Statistics
Matches: 142, Mismatches: 26, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 73 0.51
47 41 0.29
48 25 0.18
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAG
Found at i:18058117 original size:56 final size:56
Alignment explanation
Indices: 18058050--18058196 Score: 231
Period size: 56 Copynumber: 2.6 Consensus size: 56
18058040 ATTGGTATCA
* *
18058050 ATATGTGATTCTGATATATGTGTGCGAGTAAGGCTATGTTCAATATGTTAGCATCG
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTCAATATGTTAGCATCG
* * *
18058106 ATATGTGATTCTGATACATGTGTGCGAGTAAGACCATGTTTAATATGTTGGCATCG
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTCAATATGTTAGCATCG
* *
18058162 ATATGTGACTCCGATATATGTGTGCGAGTAAGACC
1 ATATGTGATTCTGATATATGTGTGCGAGTAAGACC
18058197 CTGTCTGGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 83 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
ATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTCAATATGTTAGCATCG
Found at i:18058225 original size:56 final size:56
Alignment explanation
Indices: 18058021--18058196 Score: 199
Period size: 56 Copynumber: 3.1 Consensus size: 56
18058011 GTGATTATGC
* * ** * * * * *
18058021 GTAAGACCACGTTTAATACATTGGTATCAATATGTGATTCTGATATATGTGTGCGA
1 GTAAGACCATGTTGAATATGTTGGCATCGATATGTGACTCCGATACATGTGTGCGA
* * * * * *
18058077 GTAAGGCTATGTTCAATATGTTAGCATCGATATGTGATTCTGATACATGTGTGCGA
1 GTAAGACCATGTTGAATATGTTGGCATCGATATGTGACTCCGATACATGTGTGCGA
* *
18058133 GTAAGACCATGTTTAATATGTTGGCATCGATATGTGACTCCGATATATGTGTGCGA
1 GTAAGACCATGTTGAATATGTTGGCATCGATATGTGACTCCGATACATGTGTGCGA
18058189 GTAAGACC
1 GTAAGACC
18058197 CTGTCTGGGA
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 103 1.00
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
GTAAGACCATGTTGAATATGTTGGCATCGATATGTGACTCCGATACATGTGTGCGA
Found at i:18061226 original size:30 final size:29
Alignment explanation
Indices: 18061192--18061250 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
18061182 ATTTAATACG
*
18061192 AACTTTGGAAAAATTACATTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
18061222 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
18061251 GGCTCGAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.39
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:18071581 original size:19 final size:20
Alignment explanation
Indices: 18071554--18071596 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
18071544 CAAACACCAA
*
18071554 AAAAATAAATCAT-TTCTAG
1 AAAAATAAATAATATTCTAG
*
18071573 AAAAGTAAATAATATTCTAG
1 AAAAATAAATAATATTCTAG
18071593 AAAA
1 AAAA
18071597 TATTTTACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAAATAAATAATATTCTAG
Found at i:18078172 original size:24 final size:25
Alignment explanation
Indices: 18078096--18078165 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
18078086 AGGAAGTGCT
* * *
18078096 AAAAA-GGCTATGCCCTAGTTTACC
1 AAAAAGGGCTTTGCCCCAGTTTATC
*
18078120 GAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAAGGGCTTTGCCCCAGTTTATC
18078145 AAAAAGGGCTTTGCCCCAGTT
1 AAAAAGGGCTTTGCCCCAGTT
18078166 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 4 0.10
25 36 0.90
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATC
Found at i:18078178 original size:24 final size:24
Alignment explanation
Indices: 18078121--18078192 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
18078111 TAGTTTACCG
18078121 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
18078145 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
18078169 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
18078193 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:18100075 original size:36 final size:36
Alignment explanation
Indices: 18100022--18100092 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
18100012 GTGGGACTAC
*
18100022 CAGTAAAAATGCGATGAAAGATTCAACGGCAAGATA
1 CAGTAAAAATGCAATGAAAGATTCAACGGCAAGATA
* *
18100058 CAGTAAAACTGCAATGAAAGATTCAATGGCAAGAT
1 CAGTAAAAATGCAATGAAAGATTCAACGGCAAGAT
18100093 CAGAAGCTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (36 bp):
CAGTAAAAATGCAATGAAAGATTCAACGGCAAGATA
Found at i:18107751 original size:27 final size:26
Alignment explanation
Indices: 18107720--18107835 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 26
18107710 GCTTTCACTT
18107720 AGAGTTCGTCAAGAATTCAATTTCTTC
1 AGAGTTCGTCAAGAATTC-ATTTCTTC
*
18107747 AGAGTTCGTTAAGAATTTCATTTCTTC
1 AGAGTTCGTCAAGAA-TTCATTTCTTC
* *
18107774 AGGGTTCTTCAAGAATTCCATTTCTTC
1 AGAGTTCGTCAAGAATT-CATTTCTTC
* ** * *
18107801 AAAGTTCACCAAGAACATCATTTCTTTT
1 AGAGTTCGTCAAGAA-TTCATTTC-TTC
18107829 AGAGTTC
1 AGAGTTC
18107836 ACTATAAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.03
27 60 0.81
28 12 0.16
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (26 bp):
AGAGTTCGTCAAGAATTCATTTCTTC
Found at i:18107815 original size:54 final size:54
Alignment explanation
Indices: 18107723--18107826 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
18107713 TTCACTTAGA
* *** **
18107723 GTTCGTCAAGAATTCAATTTCTTCAGAGTTCGTTAAGAATTTCATTTCTTCAGG
1 GTTCGTCAAGAATTCAATTTCTTCAAAGTTCACCAAGAACATCATTTCTTCAGG
* *
18107777 GTTCTTCAAGAATTCCATTTCTTCAAAGTTCACCAAGAACATCATTTCTT
1 GTTCGTCAAGAATTCAATTTCTTCAAAGTTCACCAAGAACATCATTTCTT
18107827 TTAGAGTTCA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.39
Consensus pattern (54 bp):
GTTCGTCAAGAATTCAATTTCTTCAAAGTTCACCAAGAACATCATTTCTTCAGG
Found at i:18107873 original size:56 final size:55
Alignment explanation
Indices: 18107792--18107896 Score: 147
Period size: 56 Copynumber: 1.9 Consensus size: 55
18107782 TCAAGAATTC
* *
18107792 CATTTCTTCAAAGTTCACCAAGAACATCATTTCTTTTAGAGTTCACTATAAACAT
1 CATTTCTTCAAAGTTCACCAAGAACATAATTTCTTTAAGAGTTCACTATAAACAT
* * * *
18107847 CATTTCCTTCAGAGTTCTCCATGAACATAATTTCTTTAAGAGTTCTCTAT
1 CATTT-CTTCAAAGTTCACCAAGAACATAATTTCTTTAAGAGTTCACTAT
18107897 GAAGGTAGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 5 0.12
56 38 0.88
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (55 bp):
CATTTCTTCAAAGTTCACCAAGAACATAATTTCTTTAAGAGTTCACTATAAACAT
Found at i:18107898 original size:28 final size:28
Alignment explanation
Indices: 18107813--18107899 Score: 111
Period size: 28 Copynumber: 3.1 Consensus size: 28
18107803 AGTTCACCAA
* *
18107813 GAACATCATTTCTTTTAGAGTTCACTAT
1 GAACATCATTTCTTTAAGAGTTCTCTAT
* * * *
18107841 AAACATCATTTCCTTCAGAGTTCTCCAT
1 GAACATCATTTCTTTAAGAGTTCTCTAT
*
18107869 GAACATAATTTCTTTAAGAGTTCTCTAT
1 GAACATCATTTCTTTAAGAGTTCTCTAT
18107897 GAA
1 GAA
18107900 GGTAGTCCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (28 bp):
GAACATCATTTCTTTAAGAGTTCTCTAT
Found at i:18112779 original size:16 final size:17
Alignment explanation
Indices: 18112724--18112785 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
18112714 CACTTTAAAA
18112724 CATAT-ATCACAATACT
1 CATATAATCACAATACT
* * * **
18112740 TATATAATGACATTTAAG
1 CATATAATCACA-ATACT
18112758 CATAT-ATCACAATACT
1 CATATAATCACAATACT
18112774 CATATAATCACA
1 CATATAATCACA
18112786 TAACATTCAA
Statistics
Matches: 33, Mismatches: 10, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
16 11 0.33
17 16 0.48
18 6 0.18
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (17 bp):
CATATAATCACAATACT
Found at i:18112803 original size:39 final size:36
Alignment explanation
Indices: 18112724--18112814 Score: 123
Period size: 39 Copynumber: 2.5 Consensus size: 36
18112714 CACTTTAAAA
* *
18112724 CATATATCACAATACT--TATATAATGACATTTAAG
1 CATATATCACAATACTCATATATAATAACATTCAAG
18112758 CATATATCACAATACTCATATAATCACATAACATTCAAG
1 CATATATCACAATACTCATAT-AT-A-ATAACATTCAAG
18112797 CATATATCACAATACTCA
1 CATATATCACAATACTCA
18112815 AAAACATGTT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
34 16 0.32
36 3 0.06
37 2 0.04
38 1 0.02
39 28 0.56
ACGTcount: A:0.45, C:0.21, G:0.03, T:0.31
Consensus pattern (36 bp):
CATATATCACAATACTCATATATAATAACATTCAAG
Found at i:18131791 original size:30 final size:30
Alignment explanation
Indices: 18131757--18131817 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
18131747 TTCCCGAGCC
18131757 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
18131787 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
18131817 T
1 T
18131818 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:18151949 original size:5 final size:5
Alignment explanation
Indices: 18151939--18151966 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
18151929 CGGTTTATAA
18151939 AATAT AATAT AATAT AATAT AATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AAT
18151967 CTAAGTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:18163732 original size:42 final size:42
Alignment explanation
Indices: 18163673--18163756 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
18163663 CTTTTGAAGA
18163673 TAGAATTTCTTGACTTATCATATGATAATGCCTACCACAAGG
1 TAGAATTTCTTGACTTATCATATGATAATGCCTACCACAAGG
18163715 TAGAATTTCTTGACTTATCATATGATAATGCCTACCACAAGG
1 TAGAATTTCTTGACTTATCATATGATAATGCCTACCACAAGG
18163757 GTTGGTCCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (42 bp):
TAGAATTTCTTGACTTATCATATGATAATGCCTACCACAAGG
Found at i:18165320 original size:37 final size:37
Alignment explanation
Indices: 18165279--18165486 Score: 169
Period size: 37 Copynumber: 5.8 Consensus size: 37
18165269 ACATGAAAAT
**
18165279 CGCTCATAAGAGCTAATCCACCCAATAACACATTAAA
1 CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
**
18165316 CGCTCATAAGAGCTAATCCACCCAATAACATGCCAAA
1 CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
* * ** **
18165353 CGTTCATAAGAGCTAATCCAACTGATAACATGCCAAA
1 CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
* *
18165390 TGCTCATAAAAGC---T--A-CCAATAACACACCAAA
1 CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
* ** * ** *
18165421 TGCTCATAAGAGCTAATCCAATCGA-AACATGCCAAT
1 CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
* * *
18165457 CGCTCATAAGATCTAATCCAACCGATAACA
1 CGCTCATAAGAGCTAATCCACCCAATAACA
18165487 ACCCATAACA
Statistics
Matches: 140, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
31 24 0.17
32 1 0.01
34 2 0.01
36 31 0.22
37 82 0.59
ACGTcount: A:0.42, C:0.28, G:0.11, T:0.19
Consensus pattern (37 bp):
CGCTCATAAGAGCTAATCCACCCAATAACACACCAAA
Found at i:18166682 original size:19 final size:19
Alignment explanation
Indices: 18166648--18166695 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
18166638 TAGGTAGTTC
*
18166648 TGGGCCATGTTGGGCCTAGA
1 TGGGCCGTGTTGGGCCTA-A
18166668 TGGGCCGTG-TGGGCCTAA
1 TGGGCCGTGTTGGGCCTAA
18166686 TGGGCTCGTG
1 TGGGC-CGTG
18166696 GGACCCACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 6 0.23
19 12 0.46
20 8 0.31
ACGTcount: A:0.10, C:0.21, G:0.44, T:0.25
Consensus pattern (19 bp):
TGGGCCGTGTTGGGCCTAA
Found at i:18166954 original size:27 final size:27
Alignment explanation
Indices: 18166914--18166966 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
18166904 GTTAAGATCT
* *
18166914 TGGTTTTTACAATTACCAAAATACCCC
1 TGGTTTGTAAAATTACCAAAATACCCC
*
18166941 TGGTTTGTAAAATTACCGAAATACCC
1 TGGTTTGTAAAATTACCAAAATACCC
18166967 TTGTAGTGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (27 bp):
TGGTTTGTAAAATTACCAAAATACCCC
Found at i:18166976 original size:27 final size:27
Alignment explanation
Indices: 18166924--18167006 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 27
18166914 TGGTTTTTAC
* * *
18166924 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATA-CCCTTGTAGTGTAA
18166951 AATTACCGAAATACCCTTGTAGTGTAA
1 AATTACCGAAATACCCTTGTAGTGTAA
* * * * *
18166978 AATAACAGTAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGTGTAA
18167005 AA
1 AA
18167007 CGACCATAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 6 0.13
27 41 0.87
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGTGTAA
Found at i:18167016 original size:27 final size:27
Alignment explanation
Indices: 18166960--18167036 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
18166950 AAATTACCGA
* * *
18166960 AATACCCTTGTAGTGTAAAATAACAGT
1 AATACCCCTGTAGGGTAAAAGAACAGT
*
18166987 AATACCCCTGTAGGGTAAAACGACCA-T
1 AATACCCCTGTAGGGTAAAA-GAACAGT
*
18167014 AATACCCCTGTATGGTAGAAAGA
1 AATACCCCTGTAGGGTA-AAAGA
18167037 TGATTATGCC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 37 0.86
28 6 0.14
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAGAACAGT
Found at i:18170636 original size:40 final size:40
Alignment explanation
Indices: 18170577--18170828 Score: 321
Period size: 40 Copynumber: 6.3 Consensus size: 40
18170567 CATTTGAATG
*
18170577 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
18170617 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
18170657 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
18170697 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
18170737 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
18170777 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
18170817 ATATCC-GGCTAA
1 ATATCCGGGCTAA
18170829 ATTCCGAAGA
Statistics
Matches: 191, Mismatches: 18, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
39 7 0.04
40 181 0.95
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:18178645 original size:20 final size:19
Alignment explanation
Indices: 18178617--18178660 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
18178607 CTGTTTAATT
18178617 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAA-TGTATTAAA
* *
18178636 ATGGGCCCAATGTGTTAAT
1 ATGGGCCCAATGTATTAAA
18178655 ATGGGC
1 ATGGGC
18178661 AAGACCCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (19 bp):
ATGGGCCCAATGTATTAAA
Found at i:18179610 original size:16 final size:17
Alignment explanation
Indices: 18179578--18179610 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
18179568 CATCAAGAAG
18179578 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
18179596 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
18179611 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:18188343 original size:26 final size:27
Alignment explanation
Indices: 18188313--18188369 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
18188303 GGTTGTTAAG
18188313 ACCCCT-GTTTGTAAAATTATCGAAAT
1 ACCCCTGGTTTGTAAAATTATCGAAAT
*
18188339 ACCCCTGGTTTGTAAAATTATTGAAAT
1 ACCCCTGGTTTGTAAAATTATCGAAAT
18188366 ACCC
1 ACCC
18188370 TTATAGTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (27 bp):
ACCCCTGGTTTGTAAAATTATCGAAAT
Done.