Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 61 of 320
Found at i:18188379 original size:27 final size:27
Alignment explanation
Indices: 18188313--18188383 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
18188303 GGTTGTTAAG
*
18188313 ACCCCTG-TTTGTAAAATTATCGAAAT
1 ACCCCTGATGTGTAAAATTATCGAAAT
* * *
18188339 ACCCCTGGTTTGTAAAATTATTGAAAT
1 ACCCCTGATGTGTAAAATTATCGAAAT
*
18188366 A-CCCTTATAGTGTAAAAT
1 ACCCCTGAT-GTGTAAAAT
18188384 GACCGTAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 12 0.31
27 27 0.69
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (27 bp):
ACCCCTGATGTGTAAAATTATCGAAAT
Found at i:18188432 original size:26 final size:26
Alignment explanation
Indices: 18188363--18188432 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
18188353 AAATTATTGA
**
18188363 AATACCCT-TATAGTGTAAAATGACCGT
1 AATACCCTGTAT-G-GTAAAACAACCGT
* *
18188390 AATGCCCCTGTAGGGTAAAACAACCGT
1 AAT-ACCCTGTATGGTAAAACAACCGT
18188417 AATACCCTGTATGGTA
1 AATACCCTGTATGGTA
18188433 GAATGGCGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
26 11 0.31
27 17 0.49
28 5 0.14
29 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
AATACCCTGTATGGTAAAACAACCGT
Found at i:18190794 original size:46 final size:47
Alignment explanation
Indices: 18190679--18190996 Score: 371
Period size: 46 Copynumber: 6.7 Consensus size: 47
18190669 TTATCTTTGA
* * * *
18190679 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCATGT
18190729 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
* * *
18190775 CATGTTGCCATAGTGTCTTTCAACTATGGTCTTGCTCATTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCATGT
18190825 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
*
18190871 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA--CATATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTTCATGT
* * ** **
18190917 CACGTTGACATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
*
18190963 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
18190997 CACATTTCAT
Statistics
Matches: 241, Mismatches: 16, Indels: 26
0.85 0.06 0.09
Matches are distributed among these distances:
44 1 0.00
45 11 0.05
46 154 0.64
47 3 0.01
48 2 0.01
49 3 0.01
50 62 0.26
51 5 0.02
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATGT
Found at i:18190848 original size:96 final size:95
Alignment explanation
Indices: 18190679--18190995 Score: 426
Period size: 96 Copynumber: 3.3 Consensus size: 95
18190669 TTATCTTTGA
* * *
18190679 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTA
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTT-CTCATTCATTTTCTGTCATGTTGCCATGGTA
18190744 TCTTTCAACCATGGTCTTATTCTTTTCATGT
65 TCTTTCAACCATGGTCTTATTCTTTTCATGT
* *
18190775 CATGTTGCCATAGTGTCTTTCAACTATGGTCTTGCTCATTCATTTTCTGTCATGTTGCCATGGTA
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTT-CTCATTCATTTTCTGTCATGTTGCCATGGTA
18190840 TCTTTCAACCATGGTCTTATTCTTTTCATGT
65 TCTTTCAACCATGGTCTTATTCTTTTCATGT
* * * * *
18190871 CATGTTGCCATGGTATCTTTCAACCATGGTCTT-ACA-T-A-TTTCATATCACGTTGACATGGTA
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTCTCATTCATTTTC-TGTCATGTTGCCATGGTA
** * **
18190932 TCTTTCAACCATGGTCTTACACATTTCATAC
65 TCTTTCAACCATGGTCTTATTCTTTTCATGT
* *
18190963 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTT
18190996 ACACATTTCA
Statistics
Matches: 205, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
91 4 0.02
92 74 0.36
93 1 0.00
94 2 0.01
96 124 0.60
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (95 bp):
CATGTTGCCATAGTATCTTTCAACCATGGTCTTCTCATTCATTTTCTGTCATGTTGCCATGGTAT
CTTTCAACCATGGTCTTATTCTTTTCATGT
Found at i:18193059 original size:22 final size:23
Alignment explanation
Indices: 18193033--18193075 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
18193023 AATTTTTCCC
*
18193033 TTTTTCCTTCTTTC-TTCTTTTT
1 TTTTTCCTTCCTTCTTTCTTTTT
18193055 TTTTTCCTTCCTTCTTTCTTT
1 TTTTTCCTTCCTTCTTTCTTT
18193076 CCCCTGCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (23 bp):
TTTTTCCTTCCTTCTTTCTTTTT
Found at i:18199741 original size:126 final size:126
Alignment explanation
Indices: 18199567--18199825 Score: 511
Period size: 126 Copynumber: 2.1 Consensus size: 126
18199557 GAAGAAAGTA
18199567 TATAG-TTTTGAGATTTAGAAATTGAAAGGTTTGTTAGTTAATGTGACTTCATGTATCTTTGATC
1 TATAGCTTTTGAGATTTAGAAATTGAAAGGTTTGTTAGTTAATGTGACTTCATGTATCTTTGATC
18199631 AATAGTTGAATTATGTGTTTATGATTATATCAAAATTATGTCATATGAGCTTACTAAGCTT
66 AATAGTTGAATTATGTGTTTATGATTATATCAAAATTATGTCATATGAGCTTACTAAGCTT
18199692 TATAGCTTTTGAGATTTAGAAATTGAAAGGTTTGTTAGTTAATGTGACTTCATGTATCTTTGATC
1 TATAGCTTTTGAGATTTAGAAATTGAAAGGTTTGTTAGTTAATGTGACTTCATGTATCTTTGATC
18199757 AATAGTTGAATTATGTGTTTATGATTATATCAAAATTATGTCATATGAGCTTACTAAGCTT
66 AATAGTTGAATTATGTGTTTATGATTATATCAAAATTATGTCATATGAGCTTACTAAGCTT
18199818 TATAGCTT
1 TATAGCTT
18199826 ACTTTGTTTA
Statistics
Matches: 133, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
125 5 0.04
126 128 0.96
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (126 bp):
TATAGCTTTTGAGATTTAGAAATTGAAAGGTTTGTTAGTTAATGTGACTTCATGTATCTTTGATC
AATAGTTGAATTATGTGTTTATGATTATATCAAAATTATGTCATATGAGCTTACTAAGCTT
Found at i:18204605 original size:27 final size:26
Alignment explanation
Indices: 18204574--18204745 Score: 182
Period size: 27 Copynumber: 6.4 Consensus size: 26
18204564 GGGGAAAAAT
* *
18204574 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTAT-TC
*
18204601 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTA-TTC
*
18204628 GGTATTTCTACCCTACAAGGGTAATTC
1 GGTAATTCTACCCTACAAGGGT-ATTC
* *
18204655 GGTAATTCTATCCTACAGGGGTATTC
1 GGTAATTCTACCCTACAAGGGTATTC
* * *
18204681 GGTAATTTTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTA-TTC
* * * *
18204708 AGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTA-TTC
18204735 GGTAATTCTAC
1 GGTAATTCTAC
18204746 AACTTATCCA
Statistics
Matches: 127, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 24 0.19
27 101 0.80
28 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (26 bp):
GGTAATTCTACCCTACAAGGGTATTC
Found at i:18204646 original size:54 final size:52
Alignment explanation
Indices: 18204578--18204738 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 52
18204568 AAAAATGGTA
* *
18204578 ATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCGGT
1 ATTTTACCCTACAAGGGTAT-TCAGTAATTCTACCCTACAGGGGTATTTCGGT
* *
18204631 ATTTCTACCCTACAAGGGTAATTCGGTAATTCTATCCTACAGGGGTA-TTCGGT
1 ATTT-TACCCTACAAGGGT-ATTCAGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
18204684 AATTTTACCTTACAGGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTCGGT
1 -ATTTTACCCTACAAGGGTA-TTCAGTAATTCTACCCTACAGGGGTATTTCGGT
18204738 A
1 A
18204739 ATTCTACAAC
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
53 45 0.48
54 45 0.48
55 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (52 bp):
ATTTTACCCTACAAGGGTATTCAGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:18204705 original size:80 final size:81
Alignment explanation
Indices: 18204574--18204745 Score: 211
Period size: 80 Copynumber: 2.1 Consensus size: 81
18204564 GGGGAAAAAT
* * *
18204574 GGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
18204639 CCTACAAGGGTAATTC
66 CCTACAAGGGTAATTC
* * * * * * *
18204655 GGTAATTCTATCCTACAGGGGTAT-TCGGTAATTTTACCTTACAGGGGTATTTCAGTAATTCTAC
1 GGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
* * * *
18204719 CTTATAGGGGTATTTC
66 CCTACAAGGGTAATTC
18204735 GGTAATTCTAC
1 GGTAATTCTAC
18204746 AACTTATCCA
Statistics
Matches: 76, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 56 0.74
81 20 0.26
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAC
CCTACAAGGGTAATTC
Found at i:18212186 original size:44 final size:44
Alignment explanation
Indices: 18212123--18212214 Score: 166
Period size: 44 Copynumber: 2.1 Consensus size: 44
18212113 TCACTTTTGC
*
18212123 CCTCACTTGGTTCGGATAACTCGTCATCTTGAACTTGCCTTCGG
1 CCTCACTTGGTTCGGATAACTCGTCATCTTGAACTTGCCTTCGA
*
18212167 CCTCACTTGGTTTGGATAACTCGTCATCTTGAACTTGCCTTCGA
1 CCTCACTTGGTTCGGATAACTCGTCATCTTGAACTTGCCTTCGA
18212211 CCTC
1 CCTC
18212215 GACCTCTAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.16, C:0.30, G:0.18, T:0.35
Consensus pattern (44 bp):
CCTCACTTGGTTCGGATAACTCGTCATCTTGAACTTGCCTTCGA
Found at i:18214657 original size:55 final size:54
Alignment explanation
Indices: 18214528--18214724 Score: 247
Period size: 54 Copynumber: 3.6 Consensus size: 54
18214518 TTGGTAAGAT
* * *
18214528 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
** *
18214582 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
18214637 AAAGG-TCTAATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
18214690 AAGGATAC-CACGTAAGACCATGTCAAGACATGGCA
1 AAGGAT-CTCATGTAAGACCATGCCAAGACATGGCA
18214725 ATGGTAAGTT
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 43 0.34
55 43 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATCTCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:18218464 original size:44 final size:44
Alignment explanation
Indices: 18218416--18218504 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
18218406 GCTAATAAAG
18218416 TATAAACAGCTGAAGATATTGACAATTGAAGTATCCATTATGAT
1 TATAAACAGCTGAAGATATTGACAATTGAAGTATCCATTATGAT
*
18218460 TATAAACAGTTGAAGATATTGACAATTGAAGTATCCATTATGAT
1 TATAAACAGCTGAAGATATTGACAATTGAAGTATCCATTATGAT
18218504 T
1 T
18218505 TAGCTTGGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (44 bp):
TATAAACAGCTGAAGATATTGACAATTGAAGTATCCATTATGAT
Found at i:18220361 original size:30 final size:31
Alignment explanation
Indices: 18220312--18220370 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
18220302 ATTTTCGAGC
*
18220312 CTAGGGGCAAAATCGTAATTCTT-CAAAGGT
1 CTAGGGGCAAAATCATAATTCTTCCAAAGGT
* * *
18220342 CTAGGTGCAAAATTATAATTTTTCCAAAG
1 CTAGGGGCAAAATCATAATTCTTCCAAAG
18220371 TTTGAGTTAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (31 bp):
CTAGGGGCAAAATCATAATTCTTCCAAAGGT
Found at i:18221286 original size:53 final size:53
Alignment explanation
Indices: 18221101--18221308 Score: 238
Period size: 54 Copynumber: 3.9 Consensus size: 53
18221091 TTGGTAAGAT
* * * *
18221101 AAGGATATCATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTC-ATAAGGC
* * * * *
18221155 AAGGAAATCATGTAAGACCGTGTCAAGACATGGCATTGATGAGTTATATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CATAAGGC
* * * *
18221209 AAAGG-TCCCATGTAAGACCTTGTCAAGACATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
* * *
18221262 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
18221309 AAAAGGAAAA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
52 4 0.03
53 44 0.33
54 81 0.61
55 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:18221320 original size:107 final size:108
Alignment explanation
Indices: 18221109--18221321 Score: 268
Period size: 107 Copynumber: 2.0 Consensus size: 108
18221099 ATAAGGATAT
* * *
18221109 CATGTAAGACCATGCCAAGGCATGGAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * * *
18221174 GTGTCAAGACATGGCATTGATGAGTTATATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTATAAAAGGAAAAGGTCC
* * * * * *
18221217 CATGTAAGACCTTGTCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
18221281 ATGTCAAGACATGGCAATGGTAAGTTCA-AAAAGGAAAAGGT
66 ATGTCAAGACATGGCAATGATAAGTT-ATAAAAGGAAAAGGT
18221322 TCCTGAGTAA
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
107 56 0.63
108 33 0.37
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGACATGGAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTATAAAAGGAAAAGGTCC
Found at i:18224135 original size:26 final size:27
Alignment explanation
Indices: 18224097--18224149 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
18224087 ATGCATTCAG
*
18224097 CTAGGACACATTAAA-ACAAGTAATAA
1 CTAGGACACATTAAACACAAATAATAA
*
18224123 CTAGGACATATTAAACACAAATAATAA
1 CTAGGACACATTAAACACAAATAATAA
18224150 ATTAAGACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.21
Consensus pattern (27 bp):
CTAGGACACATTAAACACAAATAATAA
Found at i:18225606 original size:19 final size:19
Alignment explanation
Indices: 18225582--18225623 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
18225572 GGCAAATTGG
* *
18225582 TAATTTTGCTTAGGACATA
1 TAATTTTACCTAGGACATA
18225601 TAATTTTACCTAGGACATA
1 TAATTTTACCTAGGACATA
18225620 -AATT
1 TAATT
18225624 GAGTCTGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
TAATTTTACCTAGGACATA
Found at i:18229312 original size:26 final size:26
Alignment explanation
Indices: 18229280--18229354 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
18229270 ATTCATCCCT
* *
18229280 ATTTTACCCCTAGTAAAATTTTTATG
1 ATTTTACCCCTAGTAAAATTTTAACG
*
18229306 ATTTTACTCCC-AATAAAAATTTTAACG
1 ATTTTAC-CCCTAGT-AAAATTTTAACG
* * *
18229333 ATTTTAGCCTTTGTAAAATTTT
1 ATTTTACCCCTAGTAAAATTTT
18229355 GAGAAAATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
26 19 0.49
27 20 0.51
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.45
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTAACG
Found at i:18229511 original size:6 final size:6
Alignment explanation
Indices: 18229500--18229535 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
18229490 TGCAATGGAT
18229500 CATTTC CATTTC CATTTC CATTTC CA-TT- CATTTC CA
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CA
18229536 AATGATTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 2 0.07
5 4 0.14
6 22 0.79
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.47
Consensus pattern (6 bp):
CATTTC
Found at i:18229523 original size:18 final size:16
Alignment explanation
Indices: 18229500--18229535 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 16
18229490 TGCAATGGAT
18229500 CATTTCCATTTCCATTTC
1 CATTTCCA-TT-CATTTC
18229518 CATTTCCATTCATTTC
1 CATTTCCATTCATTTC
18229534 CA
1 CA
18229536 AATGATTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 2 0.11
18 8 0.44
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.47
Consensus pattern (16 bp):
CATTTCCATTCATTTC
Found at i:18231857 original size:42 final size:42
Alignment explanation
Indices: 18231810--18231893 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
18231800 CGAACCTTAA
*
18231810 GATACACAGAGAATGAACAAGAGGATGATACTCAACCCCCAC
1 GATACACAGAGAATGAACAAGAGGACGATACTCAACCCCCAC
*
18231852 GATACACAGAGAATGAACAAGAGGACGATTCTCAACCCCCAC
1 GATACACAGAGAATGAACAAGAGGACGATACTCAACCCCCAC
18231894 CCGAAGAGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.42, C:0.27, G:0.19, T:0.12
Consensus pattern (42 bp):
GATACACAGAGAATGAACAAGAGGACGATACTCAACCCCCAC
Found at i:18238176 original size:7 final size:7
Alignment explanation
Indices: 18238164--18238248 Score: 134
Period size: 7 Copynumber: 12.0 Consensus size: 7
18238154 AATTTATAGT
18238164 GGTTTAG
1 GGTTTAG
18238171 GGTTTAG
1 GGTTTAG
*
18238178 GGTTTTAA
1 GG-TTTAG
18238186 GGTTTAG
1 GGTTTAG
18238193 GGTTTAG
1 GGTTTAG
* *
18238200 TGATTAG
1 GGTTTAG
18238207 GGTTTAG
1 GGTTTAG
18238214 GGTTTAG
1 GGTTTAG
18238221 GGTTTAG
1 GGTTTAG
18238228 GGTTTAG
1 GGTTTAG
18238235 GGTTTAG
1 GGTTTAG
18238242 GGTTTAG
1 GGTTTAG
18238249 ATCTTTTATT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
7 65 0.92
8 6 0.08
ACGTcount: A:0.16, C:0.00, G:0.40, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:18262089 original size:21 final size:19
Alignment explanation
Indices: 18262060--18262116 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
18262050 TCTCAATAAA
18262060 AAATATAAAATAATTCAAAAT
1 AAATATAAAAT--TTCAAAAT
*
18262081 AAATTTAAAATTTCAAAAT
1 AAATATAAAATTTCAAAAT
** *
18262100 ATTTATAAAATTCCAAA
1 AAATATAAAATTTCAAA
18262117 TTTATATTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 21 0.68
21 10 0.32
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATATAAAATTTCAAAAT
Found at i:18275788 original size:19 final size:19
Alignment explanation
Indices: 18275751--18275788 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
18275741 TTATATTTGT
*
18275751 TCATAAAAAATATTAAAAA
1 TCATAAAAAATATAAAAAA
*
18275770 TCATAAAAATTATAAAAAA
1 TCATAAAAAATATAAAAAA
18275789 AATTAGAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
TCATAAAAAATATAAAAAA
Found at i:18276539 original size:30 final size:30
Alignment explanation
Indices: 18276499--18276573 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
18276489 ATAACATTTC
* *
18276499 AAACATAAGTGACTAAATATAACCTAAAGT
1 AAACAAAAGTGACTAAATATAACATAAAGT
* *
18276529 AAACAAAAGTGACTAAATATAACATGAGGT
1 AAACAAAAGTGACTAAATATAACATAAAGT
18276559 AAACAAAAGTGACTA
1 AAACAAAAGTGACTA
18276574 TTTTGATAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.55, C:0.12, G:0.13, T:0.20
Consensus pattern (30 bp):
AAACAAAAGTGACTAAATATAACATAAAGT
Found at i:18276608 original size:9 final size:9
Alignment explanation
Indices: 18276589--18276718 Score: 58
Period size: 9 Copynumber: 14.0 Consensus size: 9
18276579 ATAGTTTACC
18276589 TAAAAATTTA
1 TAAAAA-TTA
18276599 TAAAAATTA
1 TAAAAATTA
18276608 TAAAAAATTA
1 T-AAAAATTA
18276618 T-AAAATTAA
1 TAAAAATT-A
18276627 TAAAGCATATT-
1 TAAA--A-ATTA
18276638 TAAAATATT-
1 TAAAA-ATTA
* *
18276647 GAAATATTA
1 TAAAAATTA
18276656 TAAAAACTTA
1 TAAAAA-TTA
18276666 TAAATAA-TA
1 TAAA-AATTA
*
18276675 -AAAAAGCTA
1 TAAAAA-TTA
*
18276684 -ATAAATTA
1 TAAAAATTA
*
18276692 T-AATATTA
1 TAAAAATTA
18276700 TTAAAAATTA
1 -TAAAAATTA
*
18276710 GAAAAATTA
1 TAAAAATTA
18276719 GAGATTATAA
Statistics
Matches: 96, Mismatches: 10, Indels: 29
0.71 0.07 0.21
Matches are distributed among these distances:
7 2 0.02
8 19 0.20
9 35 0.36
10 30 0.31
11 6 0.06
12 1 0.01
13 3 0.03
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (9 bp):
TAAAAATTA
Found at i:18276629 original size:19 final size:19
Alignment explanation
Indices: 18276589--18276718 Score: 60
Period size: 19 Copynumber: 7.0 Consensus size: 19
18276579 ATAGTTTACC
*
18276589 TAAAAATTTATAAAAATTA
1 TAAAAAATTATAAAAATTA
18276608 TAAAAAATTAT-AAAATTAA
1 TAAAAAATTATAAAAATT-A
*
18276627 TAAAGCATATT-T-AAAA-TA
1 TAAA--AAATTATAAAAATTA
* *
18276645 TTGAAATATTATAAAAACTTA
1 -TAAAAAATTATAAAAA-TTA
* **
18276666 TAAATAA-TA-AAAAA-GC
1 TAAAAAATTATAAAAATTA
* *
18276682 TAATAAATTAT-AATATTA
1 TAAAAAATTATAAAAATTA
* *
18276700 TTAAAAATTAGAAAAATTA
1 TAAAAAATTATAAAAATTA
18276719 GAGATTATAA
Statistics
Matches: 82, Mismatches: 17, Indels: 24
0.67 0.14 0.20
Matches are distributed among these distances:
16 5 0.06
17 10 0.12
18 21 0.26
19 31 0.38
20 9 0.11
21 6 0.07
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (19 bp):
TAAAAAATTATAAAAATTA
Found at i:18278477 original size:40 final size:40
Alignment explanation
Indices: 18278429--18278655 Score: 391
Period size: 40 Copynumber: 5.7 Consensus size: 40
18278419 GCAAACACAT
* *
18278429 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
18278469 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
** *
18278509 TTGCCTTCGGGTCACAGCCCGGTTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
18278549 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
18278589 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
18278629 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
18278656 ATCCAATGCT
Statistics
Matches: 176, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:18280995 original size:18 final size:16
Alignment explanation
Indices: 18280966--18280999 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
18280956 AATAAATCAT
18280966 TAAAAAATTTTAAAAA
1 TAAAAAATTTTAAAAA
18280982 TAAAAAAGTATTTAAAAA
1 TAAAAAA-T-TTTAAAAA
18281000 AGCCCAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAAATTTTAAAAA
Found at i:18291035 original size:100 final size:101
Alignment explanation
Indices: 18290858--18291044 Score: 286
Period size: 100 Copynumber: 1.9 Consensus size: 101
18290848 GGTTTTAGGC
* * *
18290858 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACTAGATAATTAGGTCGAATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGACTACAACGTGGACCAGATAATTAGGTCGAATGTGTAGTACT
* *
18290923 AAGTGCAGGCTACTATGCGTACCCGACAACTTCAAT
66 AAGTGCAAGCTACTATGAGTACCCGACAACTTCAAT
* * * *
18290959 CACGTGTGTAGTACTAAGTGCAGGCTACAACGTGGACCAGAT-TTTTGGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGACTACAACGTGGACCAGATAATTAGGTCGAATGTGTAGTACT
18291023 AAGTGCAAGCTACTATGAGTAC
66 AAGTGCAAGCTACTATGAGTAC
18291045 TAGATAGCTT
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 39 0.51
101 38 0.49
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (101 bp):
CACGTGTGTAGTACTAAGTGCAGACTACAACGTGGACCAGATAATTAGGTCGAATGTGTAGTACT
AAGTGCAAGCTACTATGAGTACCCGACAACTTCAAT
Found at i:18291270 original size:16 final size:15
Alignment explanation
Indices: 18291249--18291278 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
18291239 GAATGAAGTA
18291249 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
18291265 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
18291279 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:18296842 original size:30 final size:29
Alignment explanation
Indices: 18296806--18296866 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
18296796 AAACGGAAGT
*
18296806 TTTGGCACTAAGTGTGCTATTTAGACTAGC
1 TTTGGCACTAAGTGTGCGATTTA-ACTAGC
18296836 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
18296865 TT
1 TT
18296867 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.38
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:18298756 original size:104 final size:104
Alignment explanation
Indices: 18298520--18298749 Score: 343
Period size: 104 Copynumber: 2.2 Consensus size: 104
18298510 AGACATGGGC
* *
18298520 ATGTGTCCAGGCCATGTAACTCACTCTTTGTAACTTAGGACTACATGGGTAAGCACACAGGCGTG
1 ATGTGTCCAAGCCATGTAACTCACTGTTTGTAACTTAGGACTACATGGGTAAGCACACAGGCGTG
* * **
18298585 TGCCCAGGCCGTGTGAGTCACACGGGTAAGGACACGACT
66 TGCCCAGGCCGTGTGAATCACACAGACAAGGACACGACT
* * * * *
18298624 GTGTGTCCAAGCCGTGTAACTCACTGTTTGTGACTTAGGACTACGTGGGTAAGCACACGGGCGTG
1 ATGTGTCCAAGCCATGTAACTCACTGTTTGTAACTTAGGACTACATGGGTAAGCACACAGGCGTG
* *
18298689 TGCCCATGCCGTGTGAATCACACAGACAAGGACACGGCT
66 TGCCCAGGCCGTGTGAATCACACAGACAAGGACACGACT
18298728 ATGTGTCCAAGCCATGTAACTC
1 ATGTGTCCAAGCCATGTAACTC
18298750 TTTGTTTACA
Statistics
Matches: 111, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 111 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (104 bp):
ATGTGTCCAAGCCATGTAACTCACTGTTTGTAACTTAGGACTACATGGGTAAGCACACAGGCGTG
TGCCCAGGCCGTGTGAATCACACAGACAAGGACACGACT
Found at i:18302317 original size:21 final size:19
Alignment explanation
Indices: 18302288--18302328 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
18302278 TCTCAATAAA
18302288 AAATATAAAATAATTCAAAAT
1 AAATATAAAAT--TTCAAAAT
*
18302309 AAATTTAAAATTTCAAAAT
1 AAATATAAAATTTCAAAAT
18302328 A
1 A
18302329 TTTATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
21 10 0.53
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATATAAAATTTCAAAAT
Found at i:18302336 original size:19 final size:21
Alignment explanation
Indices: 18302291--18302346 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 21
18302281 CAATAAAAAA
18302291 TATAAAATAATTCAAAATAAAT
1 TATAAAAT-ATTCAAAATAAAT
*
18302313 T-TAAAAT-TTCAAAAT-ATT
1 TATAAAATATTCAAAATAAAT
*
18302331 TATAAAA-ATTCCAAAT
1 TATAAAATATTCAAAAT
18302347 TTATATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 3 0.10
19 20 0.67
21 6 0.20
22 1 0.03
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
TATAAAATATTCAAAATAAAT
Found at i:18310787 original size:26 final size:27
Alignment explanation
Indices: 18310724--18310787 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 27
18310714 AGAGGACTCT
*
18310724 ACAAATTAAAAAAATTATAAAATATAG
1 ACAATTTAAAAAAATTATAAAATATAG
* *
18310751 ACAATTATAAAAATTATTATAAATTATA-
1 ACAATT-TAAAAA-AATTATAAAATATAG
18310779 A-AATTTAAA
1 ACAATTTAAA
18310788 TTTAAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 4 0.12
27 9 0.28
28 7 0.22
29 12 0.38
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (27 bp):
ACAATTTAAAAAAATTATAAAATATAG
Found at i:18310829 original size:29 final size:30
Alignment explanation
Indices: 18310735--18310839 Score: 89
Period size: 36 Copynumber: 3.5 Consensus size: 30
18310725 CAAATTAAAA
18310735 AAATTATAAAATATAGACAATTATAAAAATTATTAT
1 AAATTATAAAATAT--A-AATTATAAAAA--A-TAT
*
18310771 AAATTATAAAATTTAAATT-T---AAATAT
1 AAATTATAAAATATAAATTATAAAAAATAT
18310797 --ATTA-AAAATATAAATTATAAAAAATAT
1 AAATTATAAAATATAAATTATAAAAAATAT
18310824 AAATTATGAAAATATA
1 AAATTAT-AAAATATA
18310840 GAAAAATTGT
Statistics
Matches: 59, Mismatches: 2, Indels: 21
0.72 0.02 0.26
Matches are distributed among these distances:
23 11 0.19
24 5 0.08
26 3 0.05
27 7 0.12
29 6 0.10
31 8 0.14
32 1 0.02
33 4 0.07
34 1 0.02
36 13 0.22
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (30 bp):
AAATTATAAAATATAAATTATAAAAAATAT
Found at i:18310894 original size:19 final size:19
Alignment explanation
Indices: 18310867--18310913 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
18310857 ATGATTTGTT
*
18310867 TTAAAATATAGA-AATTTA
1 TTAAAATATAAATAATTTA
*
18310885 TTAGAAATATAAATAATTTT
1 TTA-AAATATAAATAATTTA
18310905 TTAAAATAT
1 TTAAAATAT
18310914 TATAAGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 14 0.56
20 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (19 bp):
TTAAAATATAAATAATTTA
Found at i:18316184 original size:125 final size:125
Alignment explanation
Indices: 18315962--18316213 Score: 504
Period size: 125 Copynumber: 2.0 Consensus size: 125
18315952 TGGGGCCTCG
18315962 AGGGCTCGTATTAGGGACTATATGAATGTTTATGAATGGATTTTAATTTGTTAGAGAATTGGTCA
1 AGGGCTCGTATTAGGGACTATATGAATGTTTATGAATGGATTTTAATTTGTTAGAGAATTGGTCA
18316027 TGAAACGTATGATTGTTTGATTTATAAGTCCGGTAATGCTTCGTAACTTGTTTCGACATC
66 TGAAACGTATGATTGTTTGATTTATAAGTCCGGTAATGCTTCGTAACTTGTTTCGACATC
18316087 AGGGCTCGTATTAGGGACTATATGAATGTTTATGAATGGATTTTAATTTGTTAGAGAATTGGTCA
1 AGGGCTCGTATTAGGGACTATATGAATGTTTATGAATGGATTTTAATTTGTTAGAGAATTGGTCA
18316152 TGAAACGTATGATTGTTTGATTTATAAGTCCGGTAATGCTTCGTAACTTGTTTCGACATC
66 TGAAACGTATGATTGTTTGATTTATAAGTCCGGTAATGCTTCGTAACTTGTTTCGACATC
18316212 AG
1 AG
18316214 ACAAGGGTTA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 127 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.39
Consensus pattern (125 bp):
AGGGCTCGTATTAGGGACTATATGAATGTTTATGAATGGATTTTAATTTGTTAGAGAATTGGTCA
TGAAACGTATGATTGTTTGATTTATAAGTCCGGTAATGCTTCGTAACTTGTTTCGACATC
Found at i:18319596 original size:48 final size:48
Alignment explanation
Indices: 18319529--18319632 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 48
18319519 ATACGGGTAG
* * *
18319529 ACCACATGCCCATGTCTATTTAATAGA-TTGTAACACGGCCTAAGCCAC
1 ACCACACGCCCATGTCTATTTAACAGACTT-TAACACGGCCTAAACCAC
* * * *
18319577 ACCACACGCCCGTTTCTATTTAGCAGACTTTAACCCGGCCTAAACCAC
1 ACCACACGCCCATGTCTATTTAACAGACTTTAACACGGCCTAAACCAC
*
18319625 CCCACACG
1 ACCACACG
18319633 GGCGTGGCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
48 45 0.96
49 2 0.04
ACGTcount: A:0.29, C:0.36, G:0.13, T:0.22
Consensus pattern (48 bp):
ACCACACGCCCATGTCTATTTAACAGACTTTAACACGGCCTAAACCAC
Found at i:18322149 original size:46 final size:46
Alignment explanation
Indices: 18321974--18322149 Score: 166
Period size: 46 Copynumber: 3.8 Consensus size: 46
18321964 TGTAACCTGC
* * * *
18321974 CCATAAATGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCTCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
18322020 CCATAAGTGAACTTGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCACAT
* *
18322070 CTC-TCAA---AA-TCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
18322113 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
18322150 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
42 5 0.05
43 6 0.06
44 1 0.01
45 2 0.02
46 58 0.54
47 22 0.21
48 2 0.02
49 1 0.01
50 5 0.05
51 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:18330997 original size:48 final size:48
Alignment explanation
Indices: 18330896--18330999 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 48
18330886 ACACGGGTAG
* * * *
18330896 ACCACACGCTCGTGTCTATTTAAAAGATTGTAACATGGCCTAAGCCAT
1 ACCACACGCCCGTGTCTATTTAAAAGATTGTAACATAGCCTAAACCAC
**
18330944 ACCACACGCCCGTGTCTATTTAGCAGACTT-TAACATAGCCTAAACCAC
1 ACCACACGCCCGTGTCTATTTAAAAGA-TTGTAACATAGCCTAAACCAC
*
18330992 CCCACACG
1 ACCACACG
18331000 GGCATGGTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 46 0.96
49 2 0.04
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.23
Consensus pattern (48 bp):
ACCACACGCCCGTGTCTATTTAAAAGATTGTAACATAGCCTAAACCAC
Found at i:18336325 original size:18 final size:19
Alignment explanation
Indices: 18336285--18336325 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
18336275 AACAATACTT
18336285 AAATTACAATTATATTCAC
1 AAATTACAATTATATTCAC
18336304 -AATT-CAA-TATATTCAAC
1 AAATTACAATTATATTC-AC
18336321 AAATT
1 AAATT
18336326 TTTTAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATTACAATTATATTCAC
Found at i:18338905 original size:11 final size:11
Alignment explanation
Indices: 18338889--18338913 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18338879 AGTTTTCGAG
18338889 TTTGTGAGCAT
1 TTTGTGAGCAT
18338900 TTTGTGAGCAT
1 TTTGTGAGCAT
18338911 TTT
1 TTT
18338914 TGGCTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.08, G:0.24, T:0.52
Consensus pattern (11 bp):
TTTGTGAGCAT
Found at i:18341656 original size:23 final size:24
Alignment explanation
Indices: 18341630--18341679 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
18341620 CAATTTATCA
18341630 CATTTTTACTGGCAG-ATTTTTTG
1 CATTTTTACTGGCAGAATTTTTTG
18341653 CATTTTTACTGGCAGAATTTTTTG
1 CATTTTTACTGGCAGAATTTTTTG
18341677 CAT
1 CAT
18341680 ATTGTTATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.50
Consensus pattern (24 bp):
CATTTTTACTGGCAGAATTTTTTG
Found at i:18341860 original size:10 final size:10
Alignment explanation
Indices: 18341845--18341876 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
18341835 ATTTATGATA
18341845 TGTGTTGTAT
1 TGTGTTGTAT
18341855 TGTGTTGTAT
1 TGTGTTGTAT
18341865 TGTGTTGTAT
1 TGTGTTGTAT
18341875 TG
1 TG
18341877 AATGGTATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.00, G:0.31, T:0.59
Consensus pattern (10 bp):
TGTGTTGTAT
Found at i:18341884 original size:20 final size:20
Alignment explanation
Indices: 18341845--18341884 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18341835 ATTTATGATA
** *
18341845 TGTGTTGTATTGTGTTGTAT
1 TGTGTTGTATTGAATGGTAT
18341865 TGTGTTGTATTGAATGGTAT
1 TGTGTTGTATTGAATGGTAT
18341885 CAAAATTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.55
Consensus pattern (20 bp):
TGTGTTGTATTGAATGGTAT
Found at i:18343147 original size:2 final size:2
Alignment explanation
Indices: 18343140--18343187 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
18343130 AAGATGGCTT
18343140 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
18343182 GA GA GA
1 GA GA GA
18343188 TAAGCACTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:18347736 original size:18 final size:18
Alignment explanation
Indices: 18347680--18347737 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
18347670 AGGATTAAGC
18347680 TTGGACTGGTAATCCTA-A
1 TTGGACTGGTAATCC-AGA
** *
18347698 TT-GACTGG--ATTTAGC
1 TTGGACTGGTAATCCAGA
18347713 TTGGACTGGTAATCCAGA
1 TTGGACTGGTAATCCAGA
18347731 TTGGACT
1 TTGGACT
18347738 CTGTAGGGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
14 1 0.03
15 4 0.13
16 6 0.20
17 6 0.20
18 13 0.43
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (18 bp):
TTGGACTGGTAATCCAGA
Found at i:18350953 original size:46 final size:45
Alignment explanation
Indices: 18350903--18351078 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 45
18350893 TGATTGAGCA
18350903 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
18350949 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
18350994 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
18351042 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18351079 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:18351059 original size:93 final size:93
Alignment explanation
Indices: 18350900--18351070 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
18350890 GGATGATTGA
*
18350900 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
18350965 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
18350993 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
18351057 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
18351071 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18358033 original size:30 final size:30
Alignment explanation
Indices: 18357999--18358055 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
18357989 ATCCCGAGCC
18357999 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATGCAAAAGTT
* * * *
18358029 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAATGTAAATATGCAAAA
18358056 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATGCAAAAGTT
Found at i:18358528 original size:46 final size:46
Alignment explanation
Indices: 18358478--18358653 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
18358468 TGATTGAGCA
18358478 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
18358524 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
18358569 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
18358617 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18358654 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:18358634 original size:93 final size:93
Alignment explanation
Indices: 18358475--18358646 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
18358465 GGATGATTGA
*
18358475 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
18358540 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
18358568 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
18358632 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
18358647 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:18361874 original size:35 final size:35
Alignment explanation
Indices: 18361828--18361895 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
18361818 AACATGATCG
18361828 ACTGAAGCACAAACACCATAGACATGATTTAAATA
1 ACTGAAGCACAAACACCATAGACATGATTTAAATA
*
18361863 ACTGAGGCACAAACACCATAGACATGATTTAAA
1 ACTGAAGCACAAACACCATAGACATGATTTAAA
18361896 CAAACTTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (35 bp):
ACTGAAGCACAAACACCATAGACATGATTTAAATA
Found at i:18362232 original size:19 final size:19
Alignment explanation
Indices: 18362208--18362255 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
18362198 TGAAATGAGA
18362208 GATGAGGGATTGAGTAAAG
1 GATGAGGGATTGAGTAAAG
18362227 GATGAGGGATTGAGTAAAG
1 GATGAGGGATTGAGTAAAG
18362246 GATGAGGGAT
1 GATGAGGGAT
18362256 ATAGGGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.44, T:0.21
Consensus pattern (19 bp):
GATGAGGGATTGAGTAAAG
Found at i:18396191 original size:38 final size:38
Alignment explanation
Indices: 18396140--18396215 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
18396130 ATCAATACTT
* * *
18396140 GATATCTTCATTTAAGCCCTCTTCCAAACGTTTACACA
1 GATATCTTCATTTAAACCCTCTTCAAAACGATTACACA
18396178 GATATCTTCATTTAAACCCTCTTCAAAACGATTACACA
1 GATATCTTCATTTAAACCCTCTTCAAAACGATTACACA
18396216 TATCAGCCTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (38 bp):
GATATCTTCATTTAAACCCTCTTCAAAACGATTACACA
Found at i:18401886 original size:27 final size:27
Alignment explanation
Indices: 18401835--18401892 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
18401825 AGAGCATACG
* *
18401835 TGGGTCAAAGCCCATTACAATATCATT
1 TGGGTCAAAGCCCATAACAATATCAAT
*
18401862 TGGGTCACAGCCCATAACAGA-ATCAAT
1 TGGGTCAAAGCCCATAACA-ATATCAAT
18401889 TGGG
1 TGGG
18401893 CCTAGCCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (27 bp):
TGGGTCAAAGCCCATAACAATATCAAT
Found at i:18402802 original size:53 final size:53
Alignment explanation
Indices: 18402702--18402856 Score: 193
Period size: 53 Copynumber: 2.9 Consensus size: 53
18402692 CACTACAAGG
* * *
18402702 GTATTTCGGTAATTTTACACTACAGGGGTATTTCTGTAATTTTACAAATTGAGA
1 GTATTTCGGTAATTTTACA-AATAGGGGTATTTCAGTAATTTTACAAATTGAGA
* * * * * * *
18402756 GTATTTTGGTAATTTTACAAATTGGAGTATTTCGGTAATTTAACAAATTGGGG
1 GTATTTCGGTAATTTTACAAATAGGGGTATTTCAGTAATTTTACAAATTGAGA
*
18402809 GTATTTCAGTAATTTTACAAATAGAGGGTATTTCAGTAATTTTACAAA
1 GTATTTCGGTAATTTTACAAATAG-GGGTATTTCAGTAATTTTACAAA
18402857 CCGGGGGTAC
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 47 0.55
54 38 0.45
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (53 bp):
GTATTTCGGTAATTTTACAAATAGGGGTATTTCAGTAATTTTACAAATTGAGA
Found at i:18402864 original size:27 final size:27
Alignment explanation
Indices: 18402672--18402890 Score: 185
Period size: 27 Copynumber: 8.2 Consensus size: 27
18402662 TTGCCTTACA
* * *
18402672 GGGGTATTTCGATAATTTTAC-ACTACA
1 GGGGTATTTCGGTAATTTTACAAAT-CG
* * *
18402699 AGGGTATTTCGGTAATTTTAC-ACTACA
1 GGGGTATTTCGGTAATTTTACAAAT-CG
* *
18402726 GGGGTATTTCTGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATCG
* * * *
18402753 AGAGTATTTTGGTAATTTTACAAAT-T
1 GGGGTATTTCGGTAATTTTACAAATCG
* * *
18402779 GGAGTATTTCGGTAATTTAACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATCG
* *
18402806 GGGGTATTTCAGTAATTTTACAAATAG
1 GGGGTATTTCGGTAATTTTACAAATCG
* * *
18402833 AGGGTATTTCAGTAATTTTACAAACCG
1 GGGGTATTTCGGTAATTTTACAAATCG
* * *
18402860 GGGGTACTTCGATAATTTTAC-AATCC
1 GGGGTATTTCGGTAATTTTACAAATCG
18402886 GGGGT
1 GGGGT
18402891 CTTAACGACC
Statistics
Matches: 161, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
26 30 0.19
27 129 0.80
28 2 0.01
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAAATCG
Found at i:18402890 original size:80 final size:79
Alignment explanation
Indices: 18402700--18402890 Score: 220
Period size: 80 Copynumber: 2.4 Consensus size: 79
18402690 TACACTACAA
* * * **
18402700 GGGTATTTCGGTAATTTTACACTACAGGGGTATTTCTGTAATTTTACAAATTGAGAGTATTTTGG
1 GGGTATTTCGGTAATTTTACAAT-CAGGGGTATTTCAGTAATTTTACAAATAGAGAGTATTTCAG
**
18402765 TAATTTTACAAATTG
65 TAATTTTACAAACGG
* * ** *
18402780 GAGTATTTCGGTAATTTAACAAATTGGGGGTATTTCAGTAATTTTACAAATAGAGGGTATTTCAG
1 GGGTATTTCGGTAATTTTAC-AATCAGGGGTATTTCAGTAATTTTACAAATAGAGAGTATTTCAG
18402845 TAATTTTACAAACCGG
65 TAATTTTACAAA-CGG
* * *
18402861 GGGTACTTCGATAATTTTACAATCCGGGGT
1 GGGTATTTCGGTAATTTTACAATCAGGGGT
18402891 CTTAACGACC
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
80 72 0.79
81 19 0.21
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (79 bp):
GGGTATTTCGGTAATTTTACAATCAGGGGTATTTCAGTAATTTTACAAATAGAGAGTATTTCAGT
AATTTTACAAACGG
Found at i:18442879 original size:19 final size:19
Alignment explanation
Indices: 18442863--18442902 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
18442853 TTCAATTTAG
18442863 TCCCTAAATCACAATTTCA
1 TCCCTAAATCACAATTTCA
18442882 TCCCTAAATCACAATTTCA
1 TCCCTAAATCACAATTTCA
18442901 TC
1 TC
18442903 AAAATTCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (19 bp):
TCCCTAAATCACAATTTCA
Found at i:18446439 original size:14 final size:15
Alignment explanation
Indices: 18446413--18446441 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
18446403 ATTTGTGCTT
18446413 ATATGCTATTGAATA
1 ATATGCTATTGAATA
18446428 ATATGC-ATTGAATA
1 ATATGCTATTGAATA
18446442 TGAGATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
ATATGCTATTGAATA
Found at i:18455553 original size:29 final size:29
Alignment explanation
Indices: 18455499--18455555 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
18455489 ACTACCAAAT
*
18455499 ATGACATAGAAAATTACGATGCAATTATC
1 ATGACATAGAAAATTACAATGCAATTATC
* *
18455528 ATGACATAGAAAATTATAATGTAATTAT
1 ATGACATAGAAAATTACAATGCAATTAT
18455556 TCTCTATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (29 bp):
ATGACATAGAAAATTACAATGCAATTATC
Found at i:18456318 original size:37 final size:38
Alignment explanation
Indices: 18456260--18456336 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 38
18456250 ACCCCTTCAT
18456260 TCCTTAAAAATATATATAGTTGTTTCACAAAATAAAAC
1 TCCTTAAAAATATATATAGTTGTTTCACAAAATAAAAC
18456298 TCCTTAAAAA-ATATATAGTTGTTTCACAAAATAAAAC
1 TCCTTAAAAATATATATAGTTGTTTCACAAAATAAAAC
18456335 TC
1 TC
18456337 AGAACCAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 29 0.74
38 10 0.26
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (38 bp):
TCCTTAAAAATATATATAGTTGTTTCACAAAATAAAAC
Found at i:18456531 original size:7 final size:7
Alignment explanation
Indices: 18456523--18456584 Score: 70
Period size: 7 Copynumber: 8.9 Consensus size: 7
18456513 CAATTTAATA
*
18456523 CTCAATA
1 CTCAATC
*
18456530 CTCAATT
1 CTCAATC
*
18456537 TTCAATC
1 CTCAATC
* *
18456544 ATCAATT
1 CTCAATC
*
18456551 CTTAATC
1 CTCAATC
18456558 CTCAATC
1 CTCAATC
18456565 CTCAATC
1 CTCAATC
18456572 CTCAATC
1 CTCAATC
18456579 CTCAAT
1 CTCAAT
18456585 TATTTTTAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (7 bp):
CTCAATC
Found at i:18463129 original size:47 final size:47
Alignment explanation
Indices: 18463077--18463388 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
18463067 GATAATTGTG
* *
18463077 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
18463124 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
18463171 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
18463220 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
18463269 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
18463316 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
18463363 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
18463389 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 14, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.01
47 149 0.60
48 2 0.01
49 94 0.38
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:18463147 original size:96 final size:94
Alignment explanation
Indices: 18463077--18463388 Score: 448
Period size: 96 Copynumber: 3.3 Consensus size: 94
18463067 GATAATTGTG
18463077 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
18463142 GTGATAAGGCCG-AATGGCCAATGTGATGA
66 GTGATAAGG-CGTAATGGCCAATGTGATGA
18463171 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
18463236 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCGTAATGGCCAATGTGATGA
* *
18463269 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
18463334 GTGACAGAGCCG-AGTGGCCAACGTGATGG
66 GTGATA-AGGCGTAATGGCCAATGTGATGA
* * *
18463363 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAATGTATATATATGTGATAAG
18463389 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
94 55 0.28
95 5 0.03
96 100 0.50
97 3 0.01
98 37 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCGTAATGGCCAATGTGATGA
Found at i:18465583 original size:38 final size:38
Alignment explanation
Indices: 18465519--18465593 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
18465509 AATCCGAGTT
*
18465519 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
18465557 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
18465594 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:18465707 original size:40 final size:40
Alignment explanation
Indices: 18465647--18465868 Score: 356
Period size: 40 Copynumber: 5.6 Consensus size: 40
18465637 AGGTCTCGAC
*
18465647 GATG-ATCCGGGCTAATTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
18465686 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
18465726 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
18465766 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
18465806 GATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
18465846 GTTGTATCCGGACTAAGTTCCGA
1 GATGTATCCGGGCTAAGTCCCGA
18465869 CCGGACTAAG
Statistics
Matches: 168, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 4 0.02
40 164 0.98
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:18465874 original size:16 final size:16
Alignment explanation
Indices: 18465853--18465884 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
18465843 AGTGTTGTAT
18465853 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
18465869 CCGGACTAAGTTCCGA
1 CCGGACTAAGTTCCGA
18465885 AGAGCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (16 bp):
CCGGACTAAGTTCCGA
Found at i:18469452 original size:49 final size:47
Alignment explanation
Indices: 18469392--18469750 Score: 540
Period size: 47 Copynumber: 7.6 Consensus size: 47
18469382 GATAATTGTG
* *
18469392 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
18469439 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
18469486 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
18469535 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
18469584 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
18469631 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
18469678 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTCATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
18469725 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
18469751 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 192 0.66
48 2 0.01
49 94 0.32
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:18472468 original size:19 final size:19
Alignment explanation
Indices: 18472444--18472482 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
18472434 AAAAACTTTG
18472444 AAAATTCATCG-GAAACTGA
1 AAAATTCAT-GAGAAACTGA
18472463 AAAATTCATGAGAAACTGA
1 AAAATTCATGAGAAACTGA
18472482 A
1 A
18472483 GGTGACAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.21
Consensus pattern (19 bp):
AAAATTCATGAGAAACTGA
Found at i:18477118 original size:7 final size:7
Alignment explanation
Indices: 18477106--18477141 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
18477096 TGTATTGTAT
18477106 TTTTTTA
1 TTTTTTA
18477113 TTTTTTA
1 TTTTTTA
18477120 TTTTTTA
1 TTTTTTA
*
18477127 TTTTAT-
1 TTTTTTA
18477133 TTTTTTA
1 TTTTTTA
18477140 TT
1 TT
18477142 ATACAATTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:18483234 original size:13 final size:13
Alignment explanation
Indices: 18483216--18483248 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
18483206 GCATAATTAA
18483216 TCACAAACATAAG
1 TCACAAACATAAG
18483229 TCACAAACATAAG
1 TCACAAACATAAG
*
18483242 TCTCAAA
1 TCACAAA
18483249 GGTTAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.52, C:0.24, G:0.06, T:0.18
Consensus pattern (13 bp):
TCACAAACATAAG
Found at i:18499071 original size:40 final size:40
Alignment explanation
Indices: 18498982--18499170 Score: 274
Period size: 40 Copynumber: 4.7 Consensus size: 40
18498972 TGGATGATAA
* *
18498982 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCG--AGTTACTAATT
* *
18499023 CCGGGTTAAGTCCCGAAGGCATTTTTGTGAGTTACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
18499063 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
18499103 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-T
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
* *
18499143 CCGGGCTAAGTCCCAAAGGCATTTGTGC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC
18499171 TAGTGGCCAT
Statistics
Matches: 139, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
40 112 0.81
41 24 0.17
42 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:18499198 original size:120 final size:119
Alignment explanation
Indices: 18498982--18499208 Score: 264
Period size: 120 Copynumber: 1.9 Consensus size: 119
18498972 TGGATGATAA
* *
18498982 CCGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAATTCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTT
* * * * *
18499047 TTGTGAGTTACTAATTCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
65 GTGTGAGTGACCAATTCCGGGCTAAGGCCCGAAGGC-TTTGTGTGAGTTACTAATT
* *
18499103 CCGGGTTAAGTCCCGAAGGCATTTGTGCG-AGTTACTACA-TCCGGGCTAAGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCAGTGACTA-ATTCCGGGCTAAGTCCCAAAGGCATT
* * *
18499166 TGTGCT-AGTGGCC-ATATCCGGGCTATGGCCCGATGGCTTTGTG
64 TGTG-TGAGTGACCAAT-TCCGGGCTAAGGCCCGAAGGCTTTGTG
18499209 AGTGGTTATA
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
119 8 0.09
120 53 0.59
121 25 0.28
122 4 0.04
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTG
TGTGAGTGACCAATTCCGGGCTAAGGCCCGAAGGCTTTGTGTGAGTTACTAATT
Found at i:18512191 original size:29 final size:29
Alignment explanation
Indices: 18512156--18512222 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
18512146 AGTCATATTC
* * *
18512156 ATATGGCCCACTAGGTCCAGACCACCTGT
1 ATATGGCCCACTAGGCCCAAACCACATGT
* * *
18512185 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCACTAGGCCCAAACCACATGT
18512214 ATATGGCCC
1 ATATGGCCC
18512223 GTTAAGCCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAACCACATGT
Found at i:18519978 original size:29 final size:28
Alignment explanation
Indices: 18519884--18520007 Score: 88
Period size: 29 Copynumber: 4.4 Consensus size: 28
18519874 AAATTCACAT
* * ** *
18519884 ACATGTATCTGGCCCATTAAACCCAGTC
1 ACATTTATATGGCCCATTAGGCCCAATC
* * * * *
18519912 ATATTCATATGGCCCATTAGGTCTAGACC
1 ACATTTATATGGCCCATTAGGCCCA-ATC
*
18519941 A-ACTATATATGGCCCATTAGGCCCAAATC
1 ACA-TTTATATGGCCCATTAGGCCC-AATC
* *
18519970 ACATTTATATGGCCCGTTAGGCCCAGTC
1 ACATTTATATGGCCCATTAGGCCCAATC
*
18519998 ACATTCATAT
1 ACATTTATAT
18520008 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
28 30 0.41
29 41 0.56
30 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (28 bp):
ACATTTATATGGCCCATTAGGCCCAATC
Found at i:18520244 original size:16 final size:16
Alignment explanation
Indices: 18520223--18520279 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
18520213 AAACTTTTAG
18520223 CTTTTCGGCATGTCGA
1 CTTTTCGGCATGTCGA
* *
18520239 CTTTTCTGCATGTTGA
1 CTTTTCGGCATGTCGA
* * *
18520255 CTTTTCTGCATTTCGG
1 CTTTTCGGCATGTCGA
*
18520271 CATTTCGGC
1 CTTTTCGGC
18520280 TTTTGCCAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.44
Consensus pattern (16 bp):
CTTTTCGGCATGTCGA
Found at i:18521523 original size:16 final size:16
Alignment explanation
Indices: 18521502--18521534 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
18521492 GAAAATTCGA
18521502 GATTTCAAGATTTTTG
1 GATTTCAAGATTTTTG
*
18521518 GATTTCAGGATTTTTG
1 GATTTCAAGATTTTTG
18521534 G
1 G
18521535 GGCATTACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (16 bp):
GATTTCAAGATTTTTG
Found at i:18523640 original size:43 final size:42
Alignment explanation
Indices: 18523560--18523697 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 42
18523550 TGATTACATA
* *
18523560 TAAGACCATGTCTGGTACATTGGCATTGTATTGTGATTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGTA-TGTGATTATGTG
* *
18523603 TAAGACCATGTTTGGGACATTGGCATCGTTATATGATT-TCGTG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGTGATTAT-GTG
* * ** * * **
18523646 TAAAACCTTGTCCAGGACAGTGGCATCGATATGTGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGTGATTATGTG
18523689 TAAGACCAT
1 TAAGACCAT
18523698 ATTTGGGATA
Statistics
Matches: 75, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATGTGATTATGTG
Found at i:18528602 original size:22 final size:24
Alignment explanation
Indices: 18528562--18528605 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
18528552 AAAAAGCAAA
18528562 AAGAAGAACACAAGAACAAAAACC
1 AAGAAGAACACAAGAACAAAAACC
18528586 AAGAAGAA-AC-AGAACAAAAA
1 AAGAAGAACACAAGAACAAAAA
18528606 TAACGTGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 2 0.10
24 8 0.40
ACGTcount: A:0.70, C:0.16, G:0.14, T:0.00
Consensus pattern (24 bp):
AAGAAGAACACAAGAACAAAAACC
Found at i:18532807 original size:27 final size:27
Alignment explanation
Indices: 18532769--18533111 Score: 266
Period size: 27 Copynumber: 12.7 Consensus size: 27
18532759 TTAGTTTATC
* *
18532769 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * *
18532796 AAATTACTAAAAAACCGTTGGTTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
*
18532823 AAATTA-TCAAAATACCC-CTGGTTTGTA
1 AAATTACT-AAAATACCCTC-GATTTGTA
* * *
18532850 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
18532877 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
*
18532904 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * * **
18532931 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
18532958 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
** *
18532985 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* * * *
18533012 AAATTATTGAAATACCCTCAATTTGCA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
18533039 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
18533066 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* *
18533094 AAATTACCAAAGTACCCT
1 AAATTACTAAAATACCCT
18533112 GAATTTACAA
Statistics
Matches: 260, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.00
27 240 0.92
28 19 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:18533163 original size:27 final size:27
Alignment explanation
Indices: 18532904--18533164 Score: 163
Period size: 27 Copynumber: 9.6 Consensus size: 27
18532894 CTGATTTGTG
* * **
18532904 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTACA
** * * *
18532931 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACTGAAATACCCTCGATTTACA
** * **
18532958 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTACA
* ***
18532985 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTACA
* * *
18533012 AAATTATTGAAATACCCTCAATTTGCA
1 AAATTACTGAAATACCCTCGATTTACA
* **
18533039 AAATTACTGAAATACCTTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTACA
18533066 AAATTACTGAAATACCCTCGACTTGTA-A
1 AAATTACTGAAATACCCTCGA-TT-TACA
*
18533094 AAATTAC-CAAAGTACCCT-GAATTTACA
1 AAATTACTGAAA-TACCCTCG-ATTTACA
* ***
18533121 AAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTGAAATACCCTCGATTTACA
*
18533148 AAATTATTGAAATACCC
1 AAATTACTGAAATACCC
18533165 CTCTAGGGTA
Statistics
Matches: 190, Mismatches: 35, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
26 2 0.01
27 168 0.88
28 19 0.10
29 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTACA
Found at i:18533179 original size:27 final size:27
Alignment explanation
Indices: 18533149--18533288 Score: 208
Period size: 27 Copynumber: 5.2 Consensus size: 27
18533139 CGATTTACAA
* *
18533149 AATTATTGAAATACCCCTCTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
18533176 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
18533203 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
18533230 AATTACCGAAATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
*
18533257 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
18533284 AATTA
1 AATTA
18533289 TCGAGATACC
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:18533298 original size:81 final size:81
Alignment explanation
Indices: 18533147--18533317 Score: 218
Period size: 81 Copynumber: 2.1 Consensus size: 81
18533137 CTCGATTTAC
** * * *
18533147 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATTGAAATACCCCTGTAGGGTAGAATTACTGA
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGA
*
18533212 AATACCCCTGTAGGGT
66 AATACCCCTATAGGGT
* *
18533228 AAAATTACCGAAATACCCTTGTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTA-TCG
1 AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACT-G
* * *
18533292 AGATACCCTTATGGGGT
65 AAATACCCCTATAGGGT
*
18533309 AAAACTACC
1 AAAATTACC
18533318 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 76 0.99
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTCTAGGGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACTGA
AATACCCCTATAGGGT
Found at i:18533300 original size:54 final size:54
Alignment explanation
Indices: 18533147--18533312 Score: 233
Period size: 54 Copynumber: 3.1 Consensus size: 54
18533137 CTCGATTTAC
* * * *
18533147 AAAATTATTGAAATACCCCTCTAGGGTAGAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * *
18533201 AGAATTACTGAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * * *
18533255 AAAATTACTAAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTATGGGGT
1 AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
18533309 AAAA
1 AAAA
18533313 CTACCATTTT
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (54 bp):
AAAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
Found at i:18536607 original size:43 final size:43
Alignment explanation
Indices: 18536442--18536597 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 43
18536432 AGCTCATACA
* * ** * *
18536442 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAAT-G
* * *
18536484 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCATATAATG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
* * *
18536527 ATGCCAATCTCCCAGAGATGGTCTTACACATAATCACAAAATA
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
*
18536570 ATGCCAATGACCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
18536598 TGGAATCACA
Statistics
Matches: 94, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 5 0.05
43 87 0.93
44 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAAAATG
Found at i:18544336 original size:37 final size:37
Alignment explanation
Indices: 18544277--18544385 Score: 175
Period size: 37 Copynumber: 2.9 Consensus size: 37
18544267 AGCTCAGACG
*
18544277 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
18544314 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
18544351 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
18544386 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 1 0.01
37 67 0.99
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:18544586 original size:48 final size:47
Alignment explanation
Indices: 18544532--18544653 Score: 143
Period size: 39 Copynumber: 2.7 Consensus size: 47
18544522 GCACATCGCC
*
18544532 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCG
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCA
18544580 TACATA-TT----T---CATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCA
* *
18544619 TACATATTTCACATTAGCCATTCGGCCTTATCACA
1 TACATATTTCACA-TAGCCATTCGGCTTTACCACA
18544654 CATGCATGTT
Statistics
Matches: 62, Mismatches: 3, Indels: 18
0.75 0.04 0.22
Matches are distributed among these distances:
39 35 0.56
40 2 0.03
42 1 0.02
45 1 0.02
47 2 0.03
48 21 0.34
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (47 bp):
TACATATTTCACATAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:18544595 original size:39 final size:39
Alignment explanation
Indices: 18544550--18544629 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
18544540 TCACACTAGC
*
18544550 CATTCGGCTTTACCACATATACATATCTCGTACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
18544589 CATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CATTCGGCTTTACCACATATACATATCTCATACATATTT
18544628 CA
1 CA
18544630 CATTAGCCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (39 bp):
CATTCGGCTTTACCACATATACATATCTCATACATATTT
Found at i:18544722 original size:47 final size:47
Alignment explanation
Indices: 18544627--18544844 Score: 368
Period size: 47 Copynumber: 4.7 Consensus size: 47
18544617 CATACATATT
* *
18544627 TCACATTAGCCATTCGGCCTTATCAC--ACATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
18544672 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
18544719 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
18544766 TCACATTGGCCATTCGGCCTTAACACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
18544813 TCACATTGGCCATTCGGCCTTATCTCATATAT
1 TCACATTGGCCATTCGGCCTTATCACATATAT
18544845 ATACATAAAA
Statistics
Matches: 162, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 24 0.15
47 138 0.85
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:18548864 original size:40 final size:40
Alignment explanation
Indices: 18548766--18549068 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
18548756 TCCTCGTTCA
* * * * *
18548766 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
18548805 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
18548845 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
18548885 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
18548925 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
18548965 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
18549005 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
18549045 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
18549069 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 195 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:18556819 original size:40 final size:40
Alignment explanation
Indices: 18556731--18557030 Score: 378
Period size: 40 Copynumber: 7.6 Consensus size: 40
18556721 TCCTCGTTCA
* * * *
18556731 AATGCCTTC-GGACATAGCCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
18556768 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
18556808 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
18556848 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
18556887 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
18556927 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
18556967 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
18557007 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
18557031 CAGCATTCAA
Statistics
Matches: 237, Mismatches: 19, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
37 9 0.04
38 12 0.05
39 53 0.22
40 155 0.65
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:18556869 original size:79 final size:79
Alignment explanation
Indices: 18556731--18557030 Score: 374
Period size: 79 Copynumber: 3.8 Consensus size: 79
18556721 TCCTCGTTCA
* * * * *
18556731 AATGCCTTCGGACATAGCCCGG-TTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
*
18556794 TAACAACTCGCACG
66 TAATAACTCGCACG
*
18556808 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTC-GGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
18556872 TTAATAACTCGCACG
65 TTAATAACTCGCACG
18556887 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
* * *
18556952 TTAGTATCTCGCACA
65 TTAATAACTCGCACG
* * * * * * * *
18556967 AAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGA-CTTAACCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
18557031 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
77 9 0.05
78 11 0.06
79 91 0.46
80 82 0.41
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATT
TAATAACTCGCACG
Found at i:18556911 original size:119 final size:118
Alignment explanation
Indices: 18556729--18557030 Score: 408
Period size: 119 Copynumber: 2.5 Consensus size: 118
18556719 GCTCCTCGTT
* * * * *
18556729 CAAATGCCTTCGGACATAGCCCGG-TTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGAT
1 CAAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
18556793 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
66 TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
18556846 CGAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGGA
* ** *
18556911 TTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
65 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * * * *
18556965 CAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
18557030 A
64 A
18557031 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
117 21 0.13
118 13 0.08
119 85 0.52
120 38 0.23
121 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (118 bp):
CAAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:18569987 original size:68 final size:67
Alignment explanation
Indices: 18569923--18570058 Score: 159
Period size: 66 Copynumber: 2.0 Consensus size: 67
18569913 ATATATTTGC
* * * *
18569923 ATGTATATACAAAATAATATATTAA-AAATTAAAATTTAGATTATAAGTACATATTTG-AAAATA
1 ATGTATA-A-AAAATAATATATTAAGAAACTAAAA-TTAGACTATAAATACATATATGAAAAATA
18569986 TTTAA
63 TTTAA
* * * *
18569991 ATGTATAATATATAATTTATTAAGAAACTAAAATTAGACTATAAATATATATATGAAAAATATTT
1 ATGTATAAAAAATAATATATTAAGAAACTAAAATTAGACTATAAATACATATATGAAAAATATTT
18570056 AA
66 AA
18570058 A
1 A
18570059 AACATAGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
66 30 0.52
67 21 0.36
68 7 0.12
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.38
Consensus pattern (67 bp):
ATGTATAAAAAATAATATATTAAGAAACTAAAATTAGACTATAAATACATATATGAAAAATATTT
AA
Found at i:18571967 original size:27 final size:27
Alignment explanation
Indices: 18571905--18572046 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 27
18571895 AGCATGGCTG
* *
18571905 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
18571931 CCAAATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
18571959 CCAGAACAGAT-ATGTGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
18571986 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* * *
18572013 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
18572040 CCAGAAC
1 CCAGAAC
18572047 GCTTCCTCCA
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.06
27 81 0.79
28 15 0.15
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:18572702 original size:26 final size:26
Alignment explanation
Indices: 18572666--18572801 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
18572656 CATGATATTC
18572666 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
18572692 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
18572718 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
18572744 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
18572770 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
18572796 TTATCA
1 TTATCA
18572802 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:18578676 original size:25 final size:25
Alignment explanation
Indices: 18578642--18578691 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
18578632 GCCAATCTAA
*
18578642 AAATTATAATTGATTGATTAGATCC
1 AAATCATAATTGATTGATTAGATCC
18578667 AAATCATAATTGATTGATTAGATCC
1 AAATCATAATTGATTGATTAGATCC
18578692 CTGAGAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (25 bp):
AAATCATAATTGATTGATTAGATCC
Found at i:18579333 original size:3 final size:3
Alignment explanation
Indices: 18579325--18579385 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
18579315 CTAAATTGTT
18579325 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
18579373 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
18579386 CGTATCTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:18584120 original size:4 final size:4
Alignment explanation
Indices: 18584106--18584145 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
18584096 GTAATGATTG
* * *
18584106 AATA CATA AATA AATA AATA AATT AATG AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
18584146 TAGAAAGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:18584498 original size:25 final size:22
Alignment explanation
Indices: 18584463--18584559 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 22
18584453 GGATAAATAC
18584463 ATATA-AC-TAATAATACTAACGA
1 ATATATACATAAT-ATACTAAC-A
*
18584485 TATATATACATAATATACAAAACAAA
1 -ATATATACATAATATAC-TAAC--A
* *
18584511 ATATACACATAATATATTAA-A
1 ATATATACATAATATACTAACA
18584532 ATATATACATAATATACGTAA-A
1 ATATATACATAATATAC-TAACA
18584554 ATATAT
1 ATATAT
18584560 GTAATGTCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
21 16 0.26
22 10 0.16
23 5 0.08
24 8 0.13
25 22 0.35
26 1 0.02
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (22 bp):
ATATATACATAATATACTAACA
Found at i:18584534 original size:21 final size:22
Alignment explanation
Indices: 18584508--18584558 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 22
18584498 TATACAAAAC
*
18584508 AAAATATACACATAATATA-TT
1 AAAATATACACATAATATACGT
*
18584529 AAAATATATACATAATATACGT
1 AAAATATACACATAATATACGT
18584551 AAAATATA
1 AAAATATA
18584559 TGTAATGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATACACATAATATACGT
Found at i:18586517 original size:43 final size:44
Alignment explanation
Indices: 18586463--18586566 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 44
18586453 GATCTATTTT
* *
18586463 CCTACTTCTTAGGGGGTTT-AGATCTGTATATTCAACCTGTTAC
1 CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
* * *** *
18586506 CCTACTGCTTA-GGGATTTGAGGTCTGTAAATTTGGCTTGTTAC
1 CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
18586549 CCTACTGCTTAGGGGGTT
1 CCTACTGCTTAGGGGGTT
18586567 AAAGCTCATC
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 6 0.12
43 39 0.78
44 5 0.10
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.38
Consensus pattern (44 bp):
CCTACTGCTTAGGGGGTTTGAGATCTGTAAATTCAACCTGTTAC
Found at i:18586619 original size:87 final size:86
Alignment explanation
Indices: 18586499--18586909 Score: 258
Period size: 87 Copynumber: 4.7 Consensus size: 86
18586489 TATATTCAAC
* * * * **
18586499 CTGTTACCCTACTGCTTAGGGAT-TTGAGGTCTGTAAATTTGGCTTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGG-TGATAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
*
18586563 GGTTAAAGCTCAT-CATCTTTGAT
65 GGTT-AAGCTC-TCCGTCTTTGAT
* *
18586586 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAG-TCTGCT-CCACTGC-GACTTCA
1 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCT-TGTTACC-CTACTG-CTT-A
* * * * * *
18586648 GAGAGATGAGACT-TGCTGGT-TTCGAT
62 GGGGGTTAAG-CTCT-C-CGTCTTTGAT
* * * * *
18586674 CTG-TT-CC-ACTGAAACTTCAGGGAGACAAGATCTGTAATTTTCAGCCTATTACCCTACTGCTT
1 CTGTTTCCCTACTG---CTT-AGGGTGATAAGATCTGTAA-ATTCAGCTTGTTACCCTACTGCTT
*
18586736 AGGGGGTTAAG-GCT-CGTCTTTGAT
61 AGGGGGTTAAGCTCTCCGTCTTTGAT
* * * *
18586760 CTATTTCCCTACTGCTTAGGGTGATAAGATCTATAAATTCAGCCTGTTACCCTACTGCTTAGGAG
1 CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGG
* *
18586825 GTTAAGGCCCTCCGTCTTCGAT
66 GTTAA-GCTCTCCGTCTTTGAT
* * * * * *
18586847 CTG-CTCCGCTACTGCTTAAGGAGATAAGATCTG-CAATTC-GGTCTGTTACTCTACTGCTTAGG
1 CTGTTTCC-CTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCT-TGTTACCCTACTGCTTAGG
18586909 G
64 G
18586910 AGATAAGGTT
Statistics
Matches: 249, Mismatches: 48, Indels: 55
0.71 0.14 0.16
Matches are distributed among these distances:
84 31 0.12
85 24 0.10
86 46 0.18
87 82 0.33
88 21 0.08
89 29 0.12
90 13 0.05
91 3 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (86 bp):
CTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGG
GTTAAGCTCTCCGTCTTTGAT
Found at i:18586907 original size:86 final size:84
Alignment explanation
Indices: 18586713--18586908 Score: 234
Period size: 84 Copynumber: 2.3 Consensus size: 84
18586703 ATCTGTAATT
* * * **
18586713 TTCAGCCTATTACCCTACTGCTTAGGGGGTTAAGGCTCGTCTTTGATCTATTTCCCTACTGCTTA
1 TTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCGTCTTCGATCTAGCTCCCTACTGCTTA
* * *
18586778 GGGTGATAAGATCTATAAA
66 AGGAGATAAGATCTAGAAA
18586797 TTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCCCTCCGTCTTCGATCT-GCTCCGCTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGG--CT-CGTCTTCGATCTAGCTCC-CTACTG
*
18586861 CTTAAGGAGATAAGATCT-GCAA
62 CTTAAGGAGATAAGATCTAGAAA
* * *
18586883 TTCGGTCTGTTACTCTACTGCTTAGG
1 TTCAGCCTGTTACCCTACTGCTTAGG
18586909 GAGATAAGGT
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
84 33 0.34
86 30 0.31
87 33 0.34
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (84 bp):
TTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCGTCTTCGATCTAGCTCCCTACTGCTTA
AGGAGATAAGATCTAGAAA
Found at i:18598807 original size:4 final size:4
Alignment explanation
Indices: 18598793--18598832 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
18598783 GTAATGATCG
* * *
18598793 AATA CATA AATA AATA AATA AATT AATG AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
18598833 TAGAAAGTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (4 bp):
AATA
Found at i:18599184 original size:25 final size:23
Alignment explanation
Indices: 18599149--18599245 Score: 76
Period size: 25 Copynumber: 4.2 Consensus size: 23
18599139 GGTTTAATAC
18599149 ATATA-AC-TAATAATACTAACGAT
1 ATATATACATAAT-ATACTAAC-AT
* *
18599172 ATATATACATAATATACAAAACAAA
1 ATATATACATAATATAC-TAAC-AT
* *
18599197 ATATACACATAATATATTAA-AT
1 ATATATACATAATATACTAACAT
*
18599219 -TATATACATAATATACGTAAAAT
1 ATATATACATAATATAC-TAACAT
18599242 ATAT
1 ATAT
18599246 GTAATGTCTA
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
21 14 0.24
22 4 0.07
23 7 0.12
24 11 0.19
25 23 0.39
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (23 bp):
ATATATACATAATATACTAACAT
Found at i:18599961 original size:2 final size:2
Alignment explanation
Indices: 18599954--18599984 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
18599944 TTTGAAAGAA
18599954 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
18599985 AAGTTTTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:18600562 original size:19 final size:19
Alignment explanation
Indices: 18600538--18600574 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18600528 AATTGGGCTA
* *
18600538 GGGTTAGGTATTGGGTTTG
1 GGGTTAGGAAATGGGTTTG
18600557 GGGTTAGGAAATGGGTTT
1 GGGTTAGGAAATGGGTTT
18600575 TGATTTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (19 bp):
GGGTTAGGAAATGGGTTTG
Found at i:18602301 original size:10 final size:10
Alignment explanation
Indices: 18602271--18602295 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
18602261 AAAAAAATTA
18602271 TTTTAACTTT
1 TTTTAACTTT
18602281 TTTTAACTTT
1 TTTTAACTTT
18602291 TTTTA
1 TTTTA
18602296 TTTTTTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTAACTTT
Found at i:18604858 original size:23 final size:22
Alignment explanation
Indices: 18604816--18604858 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
18604806 AAAAAAGAGA
**
18604816 TACTATTTTGTTTTGTTGTTTC
1 TACTATTTTGTTTTACTGTTTC
18604838 TACTATTATTGTTTTACTGTT
1 TACTATT-TTGTTTTACTGTT
18604859 GTATTTTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.14, C:0.09, G:0.12, T:0.65
Consensus pattern (22 bp):
TACTATTTTGTTTTACTGTTTC
Found at i:18609064 original size:46 final size:46
Alignment explanation
Indices: 18608997--18609171 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
18608987 TGTAACCCGC
*
18608997 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
18609043 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
18609093 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
18609136 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
18609172 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:18609117 original size:93 final size:93
Alignment explanation
Indices: 18609004--18609175 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
18608994 CGCCCATAAG
* *
18609004 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18609069 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
18609097 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18609162 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18609176 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18614115 original size:24 final size:23
Alignment explanation
Indices: 18614087--18614131 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
18614077 ATATTACCTT
*
18614087 GCTTCAGCTCAATAAATTCTTTAC
1 GCTTCAGATCAATAAA-TCTTTAC
*
18614111 GCTTCTGATCAATAAATCTTT
1 GCTTCAGATCAATAAATCTTT
18614132 CACTAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (23 bp):
GCTTCAGATCAATAAATCTTTAC
Found at i:18616170 original size:46 final size:46
Alignment explanation
Indices: 18616103--18616277 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
18616093 TGTAACCCGC
*
18616103 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
18616149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
18616199 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
18616242 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
18616278 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 61 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:18616223 original size:93 final size:93
Alignment explanation
Indices: 18616110--18616281 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
18616100 CGCCCATAAG
* *
18616110 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18616175 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
18616203 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
18616268 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
18616282 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18629748 original size:46 final size:46
Alignment explanation
Indices: 18629681--18629854 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
18629671 TGTAACCCGC
*
18629681 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
18629727 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
18629777 -C-TCA-CGAACTCGGACTCAACTCAACGAGTT-GGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
18629819 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
18629855 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 25 0.23
46 38 0.35
47 25 0.23
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Done.