Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 65 of 320
Found at i:19591352 original size:82 final size:81
Alignment explanation
Indices: 19591212--19591362 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
19591202 AAATTGTATA
* *
19591212 GCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
19591277 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** * *
19591293 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTGAGT
1 GCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
19591357 GTGCGA
64 GTGCGA
19591363 GATGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 16 0.26
82 45 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:19591379 original size:82 final size:81
Alignment explanation
Indices: 19591208--19591388 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
19591198 GATTAAATTG
* *
19591208 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
19591273 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** * ** *
19591289 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
19591353 GAGTGTGCGAGA-TGATTA
64 AAGTGTGCGA-ATTGACCA
*
19591371 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
19591389 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 17 0.21
82 63 0.78
83 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:19591399 original size:27 final size:27
Alignment explanation
Indices: 19591346--19591399 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
19591336 TTTGATTACG
* *
19591346 TAGCACTGAGTGTGCGAGATGATTATA
1 TAGCACTGAGTGTGCGAGATCAATATA
* *
19591373 TAGCACTGAGTGTGCGGGCTCAATATA
1 TAGCACTGAGTGTGCGAGATCAATATA
19591400 CATTCGTGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
TAGCACTGAGTGTGCGAGATCAATATA
Found at i:19593337 original size:17 final size:17
Alignment explanation
Indices: 19593312--19593350 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
19593302 AAGAGTTTGT
*
19593312 CAAACCCTAGAGTTCAC
1 CAAATCCTAGAGTTCAC
*
19593329 TAAATCCTAGAGTTCAC
1 CAAATCCTAGAGTTCAC
19593346 CAAAT
1 CAAAT
19593351 GGCGAATCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (17 bp):
CAAATCCTAGAGTTCAC
Found at i:19599703 original size:49 final size:49
Alignment explanation
Indices: 19599634--19599878 Score: 276
Period size: 49 Copynumber: 4.9 Consensus size: 49
19599624 TAGCCAAAGC
* * *
19599634 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
19599683 TATTC-GGCACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TA-TCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * *
19599733 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
19599784 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
** * * *
19599833 TATCCAGTACACGTAGTAGCTTGCACTTAGTGCTACACACGTGACC
1 TATCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
19599879 TCACAATAGA
Statistics
Matches: 165, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 80 0.48
50 47 0.28
51 38 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCGGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:19599869 original size:100 final size:98
Alignment explanation
Indices: 19599640--19599878 Score: 293
Period size: 100 Copynumber: 2.4 Consensus size: 98
19599630 AAGCTATCTG
* * * *
19599640 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGCACACGTAGTAGCCT
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGCACACATAGTAGCCT
* *
19599705 GCACTTAGTACTACACACGTGACCTAACCATCT
66 GCACTTAGTACTACACACGCGACCTAACCATCA
* * *
19599738 GATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGGTACGCATAGTA
1 G-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTC-GGCACACATAGTA
* **
19599802 GCCTGCACTTAGTACTACACATGCGACC-AATTATCCA
62 GCCTGCACTTAGTACTACACACGCGACCTAACCAT-CA
* *
19599839 GTACACGTAGTAGCTTGCACTTAGTGCTACACACGTGACC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
19599879 TCACAATAGA
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
98 1 0.01
99 35 0.29
100 44 0.36
101 41 0.34
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGCACACATAGTAGCCT
GCACTTAGTACTACACACGCGACCTAACCATCA
Found at i:19601869 original size:20 final size:20
Alignment explanation
Indices: 19601796--19601890 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
19601786 CAATTAAGCC
*
19601796 TAGAAATTTTGGTATCACAT
1 TAGAAATATTGGTATCACAT
** * *
19601816 TAGCTATATTGGTGTCA-GT
1 TAGAAATATTGGTATCACAT
* * **
19601835 TAGAAATTTTAGTATCATGTT
1 TAGAAATATTGGTATCA-CAT
19601856 TA-AAATATTGGTATCACAT
1 TAGAAATATTGGTATCACAT
19601875 TAGAAATATTGGTATC
1 TAGAAATATTGGTATC
19601891 TCGTTAAAAA
Statistics
Matches: 57, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
19 16 0.28
20 38 0.67
21 3 0.05
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (20 bp):
TAGAAATATTGGTATCACAT
Found at i:19601920 original size:59 final size:58
Alignment explanation
Indices: 19601803--19601924 Score: 138
Period size: 59 Copynumber: 2.1 Consensus size: 58
19601793 GCCTAGAAAT
** * * * * *
19601803 TTTGGTATCACATTAGCTATATTGGTGTCAGTTAGAAATTTTAGTATCATGTTTAAAA
1 TTTGGTATCACATTAGAAATATTGGTATCAGTTAAAAAATTTAGCATCATGTTAAAAA
* *
19601861 TATTGGTATCACATTAGAAATATTGGTATCTCGTTAAAAAATTTGGCATCA-GTTAAAAA
1 T-TTGGTATCACATTAGAAATATTGGTATC-AGTTAAAAAATTTAGCATCATGTTAAAAA
19601920 TTTGG
1 TTTGG
19601925 CATTGATTAG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
58 5 0.09
59 33 0.62
60 15 0.28
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (58 bp):
TTTGGTATCACATTAGAAATATTGGTATCAGTTAAAAAATTTAGCATCATGTTAAAAA
Found at i:19602648 original size:29 final size:30
Alignment explanation
Indices: 19602574--19602655 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 30
19602564 TTTTAAATTT
* *
19602574 TGAAAAGTACAAAGACTAAAATTTACCAATT
1 TGAAAAGTAC-AAGACTAAAATTAACCAATA
* *
19602605 TGAAAATTA-AAGACTAAAATTAATCAA-A
1 TGAAAAGTACAAGACTAAAATTAACCAATA
19602633 T-AAAAGTACAAGGACTACAAATT
1 TGAAAAGTACAA-GACTA-AAATT
19602656 TTGCTAAGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
27 6 0.14
28 3 0.07
29 21 0.49
30 5 0.12
31 8 0.19
ACGTcount: A:0.55, C:0.11, G:0.10, T:0.24
Consensus pattern (30 bp):
TGAAAAGTACAAGACTAAAATTAACCAATA
Found at i:19605719 original size:23 final size:23
Alignment explanation
Indices: 19605691--19605739 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
19605681 TCCTGAAGTG
19605691 AATGTTGCATATAATTGTTTGCA
1 AATGTTGCATATAATTGTTTGCA
*
19605714 AATGTTGTATATAATTGTTTGCA
1 AATGTTGCATATAATTGTTTGCA
19605737 AAT
1 AAT
19605740 TTTATTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.45
Consensus pattern (23 bp):
AATGTTGCATATAATTGTTTGCA
Found at i:19615574 original size:20 final size:20
Alignment explanation
Indices: 19615551--19615601 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
19615541 GAACCCAATA
19615551 TTTTATTTATTAAATTTTAT
1 TTTTATTTATTAAATTTTAT
19615571 TTTTATTTATTAAATTTTAT
1 TTTTATTTATTAAATTTTAT
19615591 TTTTATTTATT
1 TTTTATTTATT
19615602 TATTCTAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATTTATTAAATTTTAT
Found at i:19619244 original size:23 final size:23
Alignment explanation
Indices: 19619216--19619271 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
19619206 CTATAATATC
19619216 CAAATAATATTAAAAATGACAGT
1 CAAATAATATTAAAAATGACAGT
19619239 CAAATAATATTAAAAATGACAGT
1 CAAATAATATTAAAAATGACAGT
* *
19619262 GAAACAATAT
1 CAAATAATAT
19619272 AATAAACAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.25
Consensus pattern (23 bp):
CAAATAATATTAAAAATGACAGT
Found at i:19619340 original size:24 final size:25
Alignment explanation
Indices: 19619308--19619363 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
19619298 AAATAGTTGC
* *
19619308 AAAACAACAATAAAA-AGCATAAAA
1 AAAACAACAACAAAATAGCACAAAA
*
19619332 AAAACAACACCAAAATAGCACAAAA
1 AAAACAACAACAAAATAGCACAAAA
19619357 AACAACA
1 AA-AACA
19619364 TGCAAAATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 13 0.48
25 10 0.37
26 4 0.15
ACGTcount: A:0.71, C:0.20, G:0.04, T:0.05
Consensus pattern (25 bp):
AAAACAACAACAAAATAGCACAAAA
Found at i:19619780 original size:21 final size:20
Alignment explanation
Indices: 19619733--19619780 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
19619723 TGGCACGTTA
19619733 TTTTTTGTTTTGTTTCTTCT
1 TTTTTTGTTTTGTTTCTTCT
19619753 TGGTTTTTGTTCTTGTGTTCTTCT
1 T--TTTTTGTT-TTGT-TTCTTCT
19619777 TTTT
1 TTTT
19619781 GCTTTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
22 11 0.46
23 4 0.17
24 8 0.33
ACGTcount: A:0.00, C:0.10, G:0.15, T:0.75
Consensus pattern (20 bp):
TTTTTTGTTTTGTTTCTTCT
Found at i:19625670 original size:40 final size:40
Alignment explanation
Indices: 19625595--19625839 Score: 336
Period size: 40 Copynumber: 6.2 Consensus size: 40
19625585 CGGATGATAA
* *
19625595 CGAAGGCATTTGTGCTAG-TGACTA-ATTCCGAGCTAAGTCC
1 CGAAGGCATTTGTGCGAGCT-ACTATA-TCCGGGCTAAGTCC
* *
19625635 CGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
* *
19625675 TGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
*
19625715 CAAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
19625755 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
* * * *
19625795 CGAAGGCATTTGAGCGA-ATAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGCTA-CTATATCCGGGCTAAGTCC
19625834 CGAAGG
1 CGAAGG
19625840 TACTTGGTTT
Statistics
Matches: 187, Mismatches: 15, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
39 16 0.09
40 169 0.90
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCC
Found at i:19627610 original size:29 final size:29
Alignment explanation
Indices: 19627568--19627630 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
19627558 GGAGTTAAAA
*
19627568 AAGAATGAGGACTTTTAATTATATCAAGT
1 AAGACTGAGGACTTTTAATTATATCAAGT
19627597 AAGACTGAGGACTTTTAATTATATCAAGT
1 AAGACTGAGGACTTTTAATTATATCAAGT
19627626 AAGAC
1 AAGAC
19627631 CTTATGAACC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (29 bp):
AAGACTGAGGACTTTTAATTATATCAAGT
Found at i:19637501 original size:19 final size:18
Alignment explanation
Indices: 19637468--19637504 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
19637458 ATTTTTTTTC
19637468 TTAAATTAAACATTAAAA
1 TTAAATTAAACATTAAAA
*
19637486 TTAAATTTAAATATTAAAA
1 TTAAA-TTAAACATTAAAA
19637505 GTGTTTGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAATTAAACATTAAAA
Found at i:19644435 original size:12 final size:12
Alignment explanation
Indices: 19644388--19644437 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
19644378 ACTTAATCAC
19644388 TTTAATATTAAA
1 TTTAATATTAAA
19644400 -TTAATA-TAACA
1 TTTAATATTAA-A
*
19644411 TTTATCTTATTAAA
1 TTTA--ATATTAAA
19644425 TTTAATATTAAA
1 TTTAATATTAAA
19644437 T
1 T
19644438 CTTATCAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
10 3 0.10
11 7 0.23
12 11 0.35
14 7 0.23
15 3 0.10
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:19646670 original size:20 final size:20
Alignment explanation
Indices: 19646645--19646689 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
19646635 AGGGACTAAA
* *
19646645 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
19646665 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
19646685 ATGAA
1 ATGAA
19646690 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:19648822 original size:92 final size:92
Alignment explanation
Indices: 19648702--19648929 Score: 321
Period size: 92 Copynumber: 2.5 Consensus size: 92
19648692 GCGTAGGTAG
* * * *
19648702 CGTACATATAGTACAGTGCAATGCGGTAATCTGCTATATCGATAGATTGCAGTAAAACTGCCAGT
1 CGTACATGTGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTGCAATAAAACTGCCAGT
*
19648767 TCAGTCAATGGTATATAACATAACTAA
66 TCAGTCAATGGTACATAACATAACTAA
* * *
19648794 GGTACATGTGGTACAGTGCTATGCGGTAATCTGCTATACCGATAGATTGCAATAAAACTGTCAGT
1 CGTACATGTGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTGCAATAAAACTGCCAGT
* * * *
19648859 TCAGTCAATGGTACGTAGCGTAGCTAA
66 TCAGTCAATGGTACATAACATAACTAA
* * *
19648886 CGTATATGCGGTACAGTGCAATGCGGTAATCTGCTATACTGATA
1 CGTACATGTGGTACAGTGCAATGCGGTAATCTGCTATACCGATA
19648930 TGATGTCATC
Statistics
Matches: 119, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 119 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (92 bp):
CGTACATGTGGTACAGTGCAATGCGGTAATCTGCTATACCGATAGATTGCAATAAAACTGCCAGT
TCAGTCAATGGTACATAACATAACTAA
Found at i:19651558 original size:27 final size:27
Alignment explanation
Indices: 19651516--19651640 Score: 102
Period size: 27 Copynumber: 4.9 Consensus size: 27
19651506 GCAAGTTCAT
* *
19651516 TGATTTGGCTTCGGGCCATGATATTAA
1 TGATTTGGGTTCGGGCCATGATATCAA
* *
19651543 TGATTTGGGTTTGGGCCATGATAAT-AG
1 TGATTTGGGTTCGGGCCATGAT-ATCAA
* * * * * *
19651570 T-ACTT-AG-T-GTGCGA-GTTA-CAT
1 TGATTTGGGTTCGGGCCATGATATCAA
19651591 TGATTTGGGTTCGGGCCATGATATCAA
1 TGATTTGGGTTCGGGCCATGATATCAA
19651618 TGATTTGGGTTCGGGCCATGATA
1 TGATTTGGGTTCGGGCCATGATA
19651641 GTAGCACTTT
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
21 3 0.04
22 5 0.07
23 5 0.07
24 2 0.03
25 5 0.07
26 6 0.08
27 47 0.63
28 2 0.03
ACGTcount: A:0.22, C:0.13, G:0.30, T:0.36
Consensus pattern (27 bp):
TGATTTGGGTTCGGGCCATGATATCAA
Found at i:19651598 original size:75 final size:75
Alignment explanation
Indices: 19651493--19651680 Score: 281
Period size: 75 Copynumber: 2.5 Consensus size: 75
19651483 CTATATATAT
* * *
19651493 TAGCACTTAGTGTGCAAGTT-CATTGATTTGGCTTCGGGCCATGATATTAATGATTTGGGTTTGG
1 TAGCACTTAGTGTGCGAGTTACATTGATTTGGCTTCGGGCCATGATATCAATGATTTGGGTTCGG
19651557 GCCATGATAA
66 GCCATGATAA
* *
19651567 TAGTACTTAGTGTGCGAGTTACATTGATTTGGGTTCGGGCCATGATATCAATGATTTGGGTTCGG
1 TAGCACTTAGTGTGCGAGTTACATTGATTTGGCTTCGGGCCATGATATCAATGATTTGGGTTCGG
*
19651632 GCCATGATAG
66 GCCATGATAA
* *
19651642 TAGCACTTTG-GTTACGAGTTACATTGATTTGGCTTCGGG
1 TAGCACTTAGTG-TGCGAGTTACATTGATTTGGCTTCGGG
19651681 TAAATTGAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
74 19 0.19
75 83 0.81
ACGTcount: A:0.21, C:0.14, G:0.29, T:0.36
Consensus pattern (75 bp):
TAGCACTTAGTGTGCGAGTTACATTGATTTGGCTTCGGGCCATGATATCAATGATTTGGGTTCGG
GCCATGATAA
Found at i:19653389 original size:30 final size:30
Alignment explanation
Indices: 19653355--19653412 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
19653345 CTAACCACGA
*
19653355 TGAACAACATTTGATTTTTGTGTTTTACGG
1 TGAACAACATTTGATTTGTGTGTTTTACGG
19653385 TGAACAACATTTGATTTGTGTGTTTTAC
1 TGAACAACATTTGATTTGTGTGTTTTAC
19653413 TCATCCATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.47
Consensus pattern (30 bp):
TGAACAACATTTGATTTGTGTGTTTTACGG
Found at i:19654119 original size:46 final size:46
Alignment explanation
Indices: 19654019--19654190 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
19654009 ACTCGTAGCT
* * * **
19654019 GATGCATGTCCCAGACATGTCTTACACTGGCT-TGCATCTCGAGGTT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCAATGCC
19654065 GATGCATGTCCCAGACATGTCTTACACT-GCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAATGCC
* *
19654110 GATGCCATGTCCCA-AAATTGGTCTTACACTGGCTCTCG--TAATATGACC
1 GATG-CATGTCCCAGACA-T-GTCTTACACTGGCTCTCGTCTCA-ATG-CC
* *
19654158 GATGCATGTCCCAGACATATCTTACACTAGCTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC
19654191 ACAATAATCC
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
45 16 0.15
46 54 0.50
47 23 0.21
48 15 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAATGCC
Found at i:19657183 original size:40 final size:40
Alignment explanation
Indices: 19657128--19657209 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
19657118 TGGCTAAATT
*
19657128 ACGTAATGATATCTCTTCTTTTGTGCAGATGGATTTAGAA
1 ACGTAATGATATCTCTTATTTTGTGCAGATGGATTTAGAA
19657168 ACGTAATGATATCTCTTATTTTGTGCAGATGGATTTAGAA
1 ACGTAATGATATCTCTTATTTTGTGCAGATGGATTTAGAA
19657208 AC
1 AC
19657210 ACTGTACGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (40 bp):
ACGTAATGATATCTCTTATTTTGTGCAGATGGATTTAGAA
Found at i:19658424 original size:31 final size:31
Alignment explanation
Indices: 19658386--19658447 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
19658376 AAGATCTAGG
19658386 AAGTTTTACGATTCCTTGTTTTATTGGTAGC
1 AAGTTTTACGATTCCTTGTTTTATTGGTAGC
19658417 AAGTTTTACGATTCCTTGTTTTATTGGTAGC
1 AAGTTTTACGATTCCTTGTTTTATTGGTAGC
19658448 TTAGATGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.48
Consensus pattern (31 bp):
AAGTTTTACGATTCCTTGTTTTATTGGTAGC
Found at i:19669489 original size:39 final size:41
Alignment explanation
Indices: 19669395--19669577 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
19669385 TGAATGCTGC
*
19669395 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATAT
*
19669434 CCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-T
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATAT
*
19669474 CCGGGCTAAG-CCCGAAGACATTTGTGCG-AGTTACTAA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATAT
* * *
19669513 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATAT
*
19669553 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
19669578 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 19
0.80 0.07 0.12
Matches are distributed among these distances:
39 52 0.42
40 60 0.49
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATAT
Found at i:19669599 original size:79 final size:79
Alignment explanation
Indices: 19669446--19669600 Score: 183
Period size: 79 Copynumber: 2.0 Consensus size: 79
19669436 GGACTAAGAT
* ** *
19669446 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGACATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTTGAACGAGTGACTAA
19669511 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
19669525 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGACATTTGAACGAGTGA-
*
19669587 CTATATCC-GGTTAA
62 CTAAATCCGGGTTAA
19669601 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
78 3 0.05
79 38 0.58
80 24 0.37
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:19677423 original size:39 final size:41
Alignment explanation
Indices: 19677328--19677511 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
19677318 TTGAATGCTG
*
19677328 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
19677367 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
19677407 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
19677446 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* * *
19677486 ACCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
19677512 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
39 53 0.43
40 59 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:19677533 original size:79 final size:79
Alignment explanation
Indices: 19677380--19677544 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
19677370 GGACTAAGAT
* ** *
19677380 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
* *
19677445 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* *
19677459 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCTGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
19677521 CTATA-TCCGGTTAAATT
62 CTAAATTCCGGTTAAATC
19677538 CCGAAGG
1 CCGAAGG
19677545 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 48 0.67
80 21 0.29
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATTCCGGTTAAATC
Found at i:19680013 original size:46 final size:46
Alignment explanation
Indices: 19679916--19680129 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 46
19679906 ATGCCTACGT
* * *
19679916 CATGTCCCGGACATGGTCTTACACTAGCT-TTA-CTTGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCG-AGGCTGATG
*
19679961 CATGTCCCAGACATGTCTTACACTGGCT-TGCATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCTGATG
* * * *
19680007 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCT-GATG
* * * * *
19680053 CCATGTCCC-GAACATGGTCTTACAGTAGCTCTCGTAAT-GTGGCCGATG
1 -CATGTCCCAG-ACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCTGATG
19680101 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
19680130 AAATAATCCA
Statistics
Matches: 141, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.10
45 16 0.11
46 61 0.43
47 25 0.18
48 24 0.17
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCTGATG
Found at i:19702853 original size:39 final size:40
Alignment explanation
Indices: 19702810--19702977 Score: 130
Period size: 40 Copynumber: 4.2 Consensus size: 40
19702800 CTCGTTCAAG
* * *
19702810 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACATAACCCGGATTATA-AAACTCACACGAA
* * *
19702849 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
* * * *
19702889 TGCCTTCGGGACTTAACCCAGAATTAGT--ACCTCACACAAA
1 TGCCTTCGGGACATAACCC-GGATTA-TAAAACTCACACGAA
* * * * *
19702929 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACATAACCCGG-ATTATAAAACTCACACGAA
19702969 TGCCTTCGG
1 TGCCTTCGG
19702978 ATCTTAGTCC
Statistics
Matches: 106, Mismatches: 16, Indels: 13
0.79 0.12 0.10
Matches are distributed among these distances:
39 27 0.25
40 74 0.70
41 4 0.04
42 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
Found at i:19702990 original size:40 final size:40
Alignment explanation
Indices: 19702847--19702977 Score: 183
Period size: 40 Copynumber: 3.3 Consensus size: 40
19702837 TAACTCATAC
* *
19702847 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * * *
19702887 AATGCCTTCGGGACTTAACCCAGAATTAGTACCTCACACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
19702927 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
19702967 AATGCCTTCGG
1 AATGCCTTCGG
19702978 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:19709659 original size:10 final size:10
Alignment explanation
Indices: 19709631--19709669 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
19709621 TTGGTAAAAG
*
19709631 TGAAAGTATA
1 TGAAATTATA
*
19709641 TG-TATTATA
1 TGAAATTATA
19709650 TGAAATTATA
1 TGAAATTATA
19709660 TGAAATTATA
1 TGAAATTATA
19709670 AGTTTGAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (10 bp):
TGAAATTATA
Found at i:19712012 original size:37 final size:37
Alignment explanation
Indices: 19711953--19712043 Score: 146
Period size: 37 Copynumber: 2.5 Consensus size: 37
19711943 AGCTCAGACG
* * *
19711953 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGATCTTACCCGGACA
19711990 AAATCTCCACACGTAGTCATCGGATCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGATCTTACCCGGACA
*
19712027 TAATCTCCACACGTAGT
1 AAATCTCCACACGTAGT
19712044 GTAACACCCC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGATCTTACCCGGACA
Found at i:19713451 original size:39 final size:40
Alignment explanation
Indices: 19713370--19713519 Score: 119
Period size: 39 Copynumber: 3.8 Consensus size: 40
19713360 GATATAGCTC
* * * *
19713370 CTCATTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAA
1 CTCATACAA-TGCCTTCGGGACTTAACCCGGATTATAGAAA
*
19713410 CTCATACAATGCCTTCGGGACTTAACCCGGATTTTA-AAA
1 CTCATACAATGCCTTCGGGACTTAACCCGGATTATAGAAA
** * * *
19713449 CTCGCACGAATGCCTTC-GGACTTAACCCGGAAT-TAGTAT
1 CTCATAC-AATGCCTTCGGGACTTAACCCGGATTATAGAAA
** * *
19713488 CTCGCACAAAGGCCTTCAGGACTTAACCCGGA
1 CTCATAC-AATGCCTTCGGGACTTAACCCGGA
19713520 ATTAATAACT
Statistics
Matches: 94, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 57 0.61
40 35 0.37
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CTCATACAATGCCTTCGGGACTTAACCCGGATTATAGAAA
Found at i:19713559 original size:40 final size:40
Alignment explanation
Indices: 19713417--19713552 Score: 179
Period size: 40 Copynumber: 3.4 Consensus size: 40
19713407 TAACTCATAC
* * *
19713417 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCAGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
19713457 AATGCCTTC-GGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCAGGACTTAACCCGGAATTAATAACTCGCACA
*
19713496 AAGGCCTTCAGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCAGGACTTAACCCGGAATTAATAACTCGCACA
19713536 AATGCCTTC-GGATCTTA
1 AATGCCTTCAGGA-CTTA
19713553 GTCCGGATAT
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
38 3 0.04
39 33 0.39
40 49 0.58
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (40 bp):
AATGCCTTCAGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:19721361 original size:39 final size:40
Alignment explanation
Indices: 19721318--19721485 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
19721308 CTCGTTCAAG
* * * *
19721318 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* * *
19721357 TGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
19721397 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
19721437 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
19721477 TGCCTTCGG
1 TGCCTTCGG
19721486 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
39 25 0.23
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:19721469 original size:80 final size:80
Alignment explanation
Indices: 19721353--19721538 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
19721343 AGTAACTCAT
* * * *
19721353 ACAATGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
19721417 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
19721432 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
19721496 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
19721513 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
19721539 CAACATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 71 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:19721498 original size:40 final size:40
Alignment explanation
Indices: 19721355--19721538 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
19721345 TAACTCATAC
* * *
19721355 AATGCCTTTGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
19721395 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
19721435 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
19721475 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
19721516 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
19721539 CAACATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:19727232 original size:40 final size:40
Alignment explanation
Indices: 19727177--19727256 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
19727167 AAAAAATATC
19727177 GAATTATTTAGATTACTAATCAAGTTGATGAGAGATTTAA
1 GAATTATTTAGATTACTAATCAAGTTGATGAGAGATTTAA
19727217 GAATTATTTAGATTACTAATCAAGTTGATGAGAGATTTAA
1 GAATTATTTAGATTACTAATCAAGTTGATGAGAGATTTAA
19727257 CATGTCATAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (40 bp):
GAATTATTTAGATTACTAATCAAGTTGATGAGAGATTTAA
Found at i:19729392 original size:20 final size:21
Alignment explanation
Indices: 19729367--19729406 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19729357 CTCTTGAAAC
*
19729367 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
19729387 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
19729407 TCCCTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.20, C:0.25, G:0.40, T:0.15
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:19730656 original size:49 final size:49
Alignment explanation
Indices: 19730579--19730702 Score: 162
Period size: 49 Copynumber: 2.5 Consensus size: 49
19730569 ATACTAACGC
*
19730579 CATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGTGAG-GTCGATG-
1 CATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGTG-GTGTCGATGT
* * * *
19730628 CTATGTCCTAGACAGGTCTTACATTGGCTCTCATCTATTGGTGTCGATGT
1 C-ATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGTGGTGTCGATGT
19730678 CATGTCCCAGACAGGTCTTACACTG
1 CATGTCCCAGACAGGTCTTACACTG
19730703 ACACACAACA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
48 1 0.02
49 52 0.80
50 12 0.18
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGTGGTGTCGATGT
Found at i:19730793 original size:48 final size:47
Alignment explanation
Indices: 19730722--19730936 Score: 213
Period size: 46 Copynumber: 4.6 Consensus size: 47
19730712 AAGCTAACAC
* * *
19730722 CATGTCCCAGACAGGTCTTACACTAGCTTGCCTATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CATATCTCGAGGCTGATG
* * * * *
19730770 CATGTCCCAGGCATGTCTTACACTAGC-TC-TCGTCTCAACGCTTATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCAT-ATCTCGAGGCTGATG
* * * *
19730816 CATGTCCCAAACATGTCTTACTCTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-CATATCTCGAGGCTGATG
* * * *
19730864 CATGTCCCAGACATGTCTTTCACTGGCTTTCATAT-T-GTGGCTGATT
1 CATGTCCCAGACATGTCTTACACTAGC-TTCATATCTCGAGGCTGATG
*
19730910 CATGTCCCAGACATGTTTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
19730937 ACACATATCT
Statistics
Matches: 137, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.48
47 3 0.02
48 64 0.47
49 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCATATCTCGAGGCTGATG
Found at i:19730923 original size:46 final size:48
Alignment explanation
Indices: 19730722--19730933 Score: 166
Period size: 48 Copynumber: 4.5 Consensus size: 48
19730712 AAGCTAACAC
* * * *** *
19730722 CATGTCCCAGACAGGTCTTACACTAGCTTGCCTATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTTCACTGGCTTAAATATCTCGAGGCTGATG
* * * ** * * *
19730770 CATGTCCCAGGCATGTCTTACACTAGCTCT---CGTCTCAACGCTTATG
1 CATGTCCCAGACATGTCTTTCACTGGCT-TAAATATCTCGAGGCTGATG
* * *
19730816 CATGTCCCAAACATGTCTTACTCTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTTCACTGGCTTAAATATCTCGAGGCTGATG
** * *
19730864 CATGTCCCAGACATGTCTTTCACTGGCTTTCATAT-T-GTGGCTGATT
1 CATGTCCCAGACATGTCTTTCACTGGCTTAAATATCTCGAGGCTGATG
19730910 CATGTCCCAGACATGT-TTTACACT
1 CATGTCCCAGACATGTCTTT-CACT
19730934 AGCACACATA
Statistics
Matches: 135, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
45 4 0.03
46 62 0.46
47 1 0.01
48 67 0.50
49 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTTCACTGGCTTAAATATCTCGAGGCTGATG
Found at i:19730945 original size:94 final size:94
Alignment explanation
Indices: 19730722--19730947 Score: 245
Period size: 94 Copynumber: 2.4 Consensus size: 94
19730712 AAGCTAACAC
* * * *
19730722 CATGTCCCAGACAGGTCTTACACTAGCTTGCCTATCTCGAGGCCGATGCATGTCCCAGGCATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGCCGATGCATGTCCCAGACATGTC
* * *
19730787 TTACACTAGCTCTCGTCTCAACGCTTATG
66 TTACACTAGCTCTCATATCAACGCTGATG
* * * * *
19730816 CATGTCCCAAACATGTCTTACTCTGGCTTAAATATCTCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGCCGATGCATGTCCCAGACATGTC
* * * **** *
19730881 TTTCACTGGCTTTCATATTGTGGCTGATT
66 TTACACTAGCTCTCATATCAACGCTGATG
* **
19730910 CATGTCCCAGACATGTTTTACACTAGCACACATATCTC
1 CATGTCCCAGACATGTCTTACACTAGCTTACATATCTC
19730948 CCAATATTAA
Statistics
Matches: 105, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
94 105 1.00
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATATCTCGAGGCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCTCATATCAACGCTGATG
Found at i:19735066 original size:22 final size:21
Alignment explanation
Indices: 19735040--19735091 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
19735030 CAAGTTTCCT
19735040 TTATATTAATTGGTTATCATTA
1 TTATATTAATTGGTTATCA-TA
**
19735062 TTATA-T-ATTTTTTATCATA
1 TTATATTAATTGGTTATCATA
19735081 TTGATATTAAT
1 TT-ATATTAAT
19735092 ATGTATACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 2 0.08
22 7 0.28
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.58
Consensus pattern (21 bp):
TTATATTAATTGGTTATCATA
Found at i:19741758 original size:22 final size:22
Alignment explanation
Indices: 19741733--19741778 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
19741723 TTTAACTTTA
* *
19741733 TTTATATATTCTTTAGAATTTT
1 TTTAAATATTCTTTAAAATTTT
* *
19741755 TTTAAATTTTTTTTAAAATTTT
1 TTTAAATATTCTTTAAAATTTT
19741777 TT
1 TT
19741779 AAAAATATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (22 bp):
TTTAAATATTCTTTAAAATTTT
Found at i:19741783 original size:11 final size:11
Alignment explanation
Indices: 19741744--19741784 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
19741734 TTATATATTC
*
19741744 TTTAGAATTTT
1 TTTAAAATTTT
*
19741755 TTTAAATTTTT
1 TTTAAAATTTT
19741766 TTTAAAATTTT
1 TTTAAAATTTT
*
19741777 TTAAAAAT
1 TTTAAAAT
19741785 ATAAATTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TTTAAAATTTT
Found at i:19741818 original size:27 final size:27
Alignment explanation
Indices: 19741788--19741847 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
19741778 TAAAAATATA
*
19741788 AATTTT-ATATTT-TTTATAAATATTTTG
1 AATTTTAAAATTTATTTA-AAAT-TTTTG
19741815 AATTTTAAAATTTATTTAAAATTTTTG
1 AATTTTAAAATTTATTTAAAATTTTTG
19741842 AATTTT
1 AATTTT
19741848 TTTTTTAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 17 0.57
28 9 0.30
29 4 0.13
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (27 bp):
AATTTTAAAATTTATTTAAAATTTTTG
Found at i:19741943 original size:9 final size:9
Alignment explanation
Indices: 19741929--19741967 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
19741919 ACACCAATCT
19741929 ATTATTTGA
1 ATTATTTGA
*
19741938 ATTATTAGA
1 ATTATTTGA
19741947 ATTATTTGA
1 ATTATTTGA
* *
19741956 GTTATTCGA
1 ATTATTTGA
19741965 ATT
1 ATT
19741968 GTAAAACTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (9 bp):
ATTATTTGA
Found at i:19741952 original size:18 final size:18
Alignment explanation
Indices: 19741929--19741967 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
19741919 ACACCAATCT
19741929 ATTATTTGAATTATTAGA
1 ATTATTTGAATTATTAGA
* *
19741947 ATTATTTGAGTTATTCGA
1 ATTATTTGAATTATTAGA
19741965 ATT
1 ATT
19741968 GTAAAACTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.03, G:0.13, T:0.51
Consensus pattern (18 bp):
ATTATTTGAATTATTAGA
Found at i:19746129 original size:20 final size:21
Alignment explanation
Indices: 19746091--19746129 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
19746081 ATTTTGAAAT
19746091 TTCCACATGGTCGTGTAACCC
1 TTCCACATGGTCGTGTAACCC
19746112 TTCCACATGGTC-TGTAAC
1 TTCCACATGGTCGTGTAAC
19746130 ATCCATACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.31
Consensus pattern (21 bp):
TTCCACATGGTCGTGTAACCC
Found at i:19757785 original size:5 final size:5
Alignment explanation
Indices: 19757775--19757799 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
19757765 GTCAACTCCT
19757775 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
19757800 AATTACAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:19759886 original size:74 final size:74
Alignment explanation
Indices: 19759755--19759913 Score: 300
Period size: 74 Copynumber: 2.1 Consensus size: 74
19759745 CTCATTTTAA
19759755 TATCTTAAACTCAATTAAGATGAATGTAGACATATGGATGTCCAAGTTAATCTCATCTTTCCCAC
1 TATC-TAAA-TCAATTAAGATGAATGTAGACATATGGATGTCCAAGTTAATCTCATCTTTCCCAC
19759820 ACCATCATAGT
64 ACCATCATAGT
19759831 TATCTAAATCAATTAAGATGAATGTAGACATATGGATGTCCAAGTTAATCTCATCTTTCCCACAC
1 TATCTAAATCAATTAAGATGAATGTAGACATATGGATGTCCAAGTTAATCTCATCTTTCCCACAC
19759896 CATCATAGT
66 CATCATAGT
19759905 TATCTAAAT
1 TATCTAAAT
19759914 ATGAGATGAA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
74 75 0.90
75 4 0.05
76 4 0.05
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.33
Consensus pattern (74 bp):
TATCTAAATCAATTAAGATGAATGTAGACATATGGATGTCCAAGTTAATCTCATCTTTCCCACAC
CATCATAGT
Found at i:19764854 original size:17 final size:17
Alignment explanation
Indices: 19764814--19764861 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
19764804 CATTGATATG
19764814 CATATAATATATACACA
1 CATATAATATATACACA
*
19764831 CACATAATATATACACA
1 CATATAATATATACACA
19764848 -ATTATAATAATATA
1 CA-TATAAT-ATATA
19764862 AAATTAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 21 0.78
18 5 0.19
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (17 bp):
CATATAATATATACACA
Found at i:19768023 original size:26 final size:26
Alignment explanation
Indices: 19767985--19768068 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
19767975 CATGAAATTC
* *
19767985 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
19768011 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
19768037 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
19768063 TTATCA
1 TTATCA
19768069 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:19768676 original size:22 final size:22
Alignment explanation
Indices: 19768651--19768692 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
19768641 CATAAAATTA
19768651 AAAAAGAA-AAACGAATCAATCC
1 AAAAAGAATAAA-GAATCAATCC
*
19768673 AAAAATAATAAAGAATCAAT
1 AAAAAGAATAAAGAATCAAT
19768693 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.67, C:0.12, G:0.07, T:0.14
Consensus pattern (22 bp):
AAAAAGAATAAAGAATCAATCC
Found at i:19775594 original size:112 final size:116
Alignment explanation
Indices: 19775478--19775688 Score: 270
Period size: 112 Copynumber: 1.9 Consensus size: 116
19775468 AAACTATATG
* * * * ** *
19775478 ATACATACTTTAACATTTTATAC-AAATATAATATAGAAAATGAT-AA-ATAACGACATAAATTA
1 ATACATACATT-ACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTA
* *
19775540 CAT-A-ATATACATTAACATTTCATGCAGATATAATCATAAATAACATAAAT
65 CATAATATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
* *
19775590 ATACATACATTACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTAC
1 ATACATACATTACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTAC
*
19775655 ATAATATATACAATAATATTTCATGCAAATATAA
66 ATAATATATACAATAACATTTCATGCAAATATAA
19775689 CTTAAAATAA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
111 9 0.11
112 27 0.33
113 2 0.02
114 17 0.21
115 1 0.01
116 26 0.32
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (116 bp):
ATACATACATTACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTAC
ATAATATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
Found at i:19775873 original size:14 final size:14
Alignment explanation
Indices: 19775850--19775897 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
19775840 TGAACATATA
*
19775850 AAATATAAAAAAAT
1 AAATACAAAAAAAT
*
19775864 AAATACAAAAAACT
1 AAATACAAAAAAAT
19775878 AAATACAATAAAAAAT
1 AAATAC-A-AAAAAAT
19775894 AAAT
1 AAAT
19775898 GAGGTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 18 0.62
15 1 0.03
16 10 0.34
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:19776234 original size:20 final size:19
Alignment explanation
Indices: 19776169--19776277 Score: 84
Period size: 19 Copynumber: 5.8 Consensus size: 19
19776159 AAACAAAACA
*
19776169 ATATAATATATAATAGAAT
1 ATATAATATATAATAAAAT
* *
19776188 A-AAAATAATATAAT-GAAT
1 ATATAAT-ATATAATAAAAT
*
19776206 A-AT-ATATATAGTAAAAT
1 ATATAATATATAATAAAAT
19776223 GATATAATATATAATAAAAT
1 -ATATAATATATAATAAAAT
*
19776243 ATATAA-ATAAAATATAAAT
1 ATATAATATATAATA-AAAT
* *
19776262 AATATGATAAATAATA
1 -ATATAATATATAATA
19776278 CATAAATAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
16 6 0.08
17 5 0.07
18 18 0.25
19 20 0.27
20 18 0.25
21 6 0.08
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (19 bp):
ATATAATATATAATAAAAT
Found at i:19776257 original size:23 final size:24
Alignment explanation
Indices: 19776226--19776288 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
19776216 GTAAAATGAT
*
19776226 ATAATATATAATAAAATAT-ATAA
1 ATAAAATATAATAAAATATGATAA
*
19776249 ATAAAATATAA-ATAATATGATAA
1 ATAAAATATAATAAAATATGATAA
19776272 ATAATACATA-AATAAAA
1 ATAA-A-ATATAATAAAA
19776289 ATAATATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 6 0.18
23 18 0.55
24 3 0.09
25 6 0.18
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
ATAAAATATAATAAAATATGATAA
Found at i:19776273 original size:12 final size:11
Alignment explanation
Indices: 19776171--19776305 Score: 88
Period size: 11 Copynumber: 12.5 Consensus size: 11
19776161 ACAAAACAAT
19776171 ATAATATAT-A
1 ATAATATATAA
*
19776181 ATAGA-ATAAAA
1 ATA-ATATATAA
*
19776192 ATAATATAATGA
1 ATAATAT-ATAA
19776204 ATAATATATATA
1 ATAATATATA-A
* *
19776216 GTAA-A-ATGAT
1 ATAATATAT-AA
19776226 ATAATATATAA
1 ATAATATATAA
*
19776237 TAAAATATATAA
1 -ATAATATATAA
*
19776249 ATAAAATATAA
1 ATAATATATAA
19776260 ATAATATGATAA
1 ATAATAT-ATAA
*
19776272 ATAATACATAA
1 ATAATATATAA
*
19776283 ATAA-AAAT-A
1 ATAATATATAA
19776292 AT-ATATAT-A
1 ATAATATATAA
19776301 ATAAT
1 ATAAT
19776306 TTTTACATAT
Statistics
Matches: 98, Mismatches: 15, Indels: 24
0.72 0.11 0.18
Matches are distributed among these distances:
8 1 0.01
9 9 0.09
10 17 0.17
11 36 0.37
12 35 0.36
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (11 bp):
ATAATATATAA
Found at i:19776277 original size:15 final size:14
Alignment explanation
Indices: 19776186--19776305 Score: 78
Period size: 12 Copynumber: 8.6 Consensus size: 14
19776176 ATATAATAGA
19776186 ATAAA-AATAATAT
1 ATAAATAATAATAT
*
19776199 AATGAATAATATATAT
1 -ATAAATAATA-ATAT
19776215 AGTAAAATGATATAATAT
1 A-T-AAAT-A-ATAATAT
19776233 AT-AATAA-AATAT
1 ATAAATAATAATAT
19776245 ATAAAT-A-AA-AT
1 ATAAATAATAATAT
*
19776256 ATAAATAAT-AT-G
1 ATAAATAATAATAT
*
19776268 ATAAATAATACATAA
1 ATAAATAATA-ATAT
19776283 ATAAA-AATAATAT
1 ATAAATAATAATAT
19776296 ATATAATAAT
1 ATA-AATAAT
19776306 TTTTACATAT
Statistics
Matches: 86, Mismatches: 5, Indels: 29
0.72 0.04 0.24
Matches are distributed among these distances:
11 8 0.09
12 21 0.24
13 10 0.12
14 13 0.15
15 16 0.19
16 5 0.06
17 4 0.05
18 6 0.07
19 3 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (14 bp):
ATAAATAATAATAT
Found at i:19776283 original size:34 final size:33
Alignment explanation
Indices: 19776171--19776305 Score: 122
Period size: 34 Copynumber: 4.2 Consensus size: 33
19776161 ACAAAACAAT
* * *
19776171 ATAATATAT-AATAGAATAAAAATAATATAATGA
1 ATAATATATAAATAAAATATAAATAATAT-ATAA
*
19776204 ATAATATATATAGTAAAATGAT--ATAATATATAA
1 ATAATATATA-AATAAAAT-ATAAATAATATATAA
*
19776237 TAAAATATATAAATAAAATATAAATAATATGATAA
1 -ATAATATATAAATAAAATATAAATAATAT-ATAA
*
19776272 ATAATACATAAATAAAA-AT-AAT-ATATAT-A
1 ATAATATATAAATAAAATATAAATAATATATAA
19776301 ATAAT
1 ATAAT
19776306 TTTTACATAT
Statistics
Matches: 87, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
29 6 0.07
30 2 0.02
31 4 0.05
32 5 0.06
33 21 0.24
34 38 0.44
35 10 0.11
36 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (33 bp):
ATAATATATAAATAAAATATAAATAATATATAA
Found at i:19776305 original size:68 final size:67
Alignment explanation
Indices: 19776168--19776305 Score: 163
Period size: 68 Copynumber: 2.0 Consensus size: 67
19776158 AAAACAAAAC
* * * * * *
19776168 AATATAATATATAATAGAATAAAAATAATATAATGAATAATATATATAGTAAAATGATATAATAT
1 AATAAAATATATAATAAAATAAAAATAATATAATAAATAATACATATAATAAAATAATATAATAT
19776233 AT
66 AT
* *
19776235 AATAAAATATATAAATAAAATATAAATAATATGATAAATAATACATA-AATAAAAATAATAT-AT
1 AATAAAATATAT-AATAAAATAAAAATAATATAATAAATAATACATATAAT-AAAATAATATAAT
19776298 ATAAT
64 AT-AT
19776303 AAT
1 AAT
19776306 TTTTACATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
67 17 0.28
68 43 0.72
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.33
Consensus pattern (67 bp):
AATAAAATATATAATAAAATAAAAATAATATAATAAATAATACATATAATAAAATAATATAATAT
AT
Found at i:19776317 original size:20 final size:19
Alignment explanation
Indices: 19776292--19776329 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
19776282 AATAAAAATA
*
19776292 ATATATATAATAATTTTTAC
1 ATATATA-AATAATGTTTAC
19776312 ATATATAAATAATGTTTA
1 ATATATAAATAATGTTTA
19776330 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
ATATATAAATAATGTTTAC
Found at i:19776363 original size:25 final size:24
Alignment explanation
Indices: 19776335--19776387 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
19776325 GTTTATAGTA
*
19776335 AAAATAAAT-AATATATAAAATATTT
1 AAAATAAATAAAT-TATAAAA-AATT
19776360 AAAATAAATAAATTATAAAAAATT
1 AAAATAAATAAATTATAAAAAATT
19776384 AAAA
1 AAAA
19776388 GGATTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 7 0.27
25 16 0.62
26 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (24 bp):
AAAATAAATAAATTATAAAAAATT
Found at i:19779343 original size:26 final size:26
Alignment explanation
Indices: 19779314--19779423 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
19779304 CATGAAATTC
*
19779314 TTATCATGAAACATTTACATAATCC-A
1 TTATCATGAAACATTTACCTAA-CCTA
*
19779340 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
19779366 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
19779392 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
19779418 TTATCA
1 TTATCA
19779424 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 2 0.03
26 78 0.98
ACGTcount: A:0.37, C:0.23, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:19781002 original size:45 final size:46
Alignment explanation
Indices: 19780925--19781185 Score: 167
Period size: 45 Copynumber: 5.8 Consensus size: 46
19780915 CTCCTTATCA
*
19780925 AATACAGAGACGC-AAATCTG-CTATCTTCGATCTGCTCCCCGTCT
1 AATACAGAGACACTAAATCTGTCTATCTTCGATCTGCTCCCCGTCT
* *
19780969 AATACAGAGACACTAAATCTGTC-ATCTTCGATCTGCT--TCGATGT
1 AATACAGAGACACTAAATCTGTCTATCTTCGATCTGCTCCCCG-TCT
* * *
19781013 AA-ACACATGA-ATGTCAGAT-T-TACTATCTTCGATCTGCTCCCCGTCT
1 AATACAGA-GACA-CT-AAATCTGT-CTATCTTCGATCTGCTCCCCGTCT
* * * * *
19781059 AATACATAGACGCCAAATCTG-CTATCTTCGATCTGCT--TCGATGT
1 AATACAGAGACACTAAATCTGTCTATCTTCGATCTGCTCCCCG-TCT
* * * *
19781103 AA-ACACACGA-ATGTTAGATCT-ACTATCTTCGATCTGCTCCCCGTCT
1 AATACAGA-GACA--CTAAATCTGTCTATCTTCGATCTGCTCCCCGTCT
* * *
19781149 AATATAGAGACACCAAATCTGTC-AGCTTCGATCTGCT
1 AATACAGAGACACTAAATCTGTCTATCTTCGATCTGCT
19781186 TCGATGTAAA
Statistics
Matches: 164, Mismatches: 29, Indels: 47
0.68 0.12 0.20
Matches are distributed among these distances:
43 14 0.09
44 27 0.16
45 96 0.59
46 15 0.09
47 12 0.07
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (46 bp):
AATACAGAGACACTAAATCTGTCTATCTTCGATCTGCTCCCCGTCT
Found at i:19781098 original size:90 final size:90
Alignment explanation
Indices: 19780940--19781439 Score: 768
Period size: 90 Copynumber: 5.6 Consensus size: 90
19780930 AGAGACGCAA
* * *
19780940 ATCTGCTATCTTCGATCTGCTCCCCGTCTAATACAGAGACACTAAATCTGTCATCTTCGATCTGC
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGC
*
19781005 TTCGATGTAAACACATGAATGTCAG
66 TTCGATGTAAACACACGAATGTCAG
* *
19781030 ATTTACTATCTTCGATCTGCTCCCCGTCTAATACATAGACGCCAAATCTG-CTATCTTCGATCTG
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTG
*
19781094 CTTCGATGTAAACACACGAATGTTAG
65 CTTCGATGTAAACACACGAATGTCAG
* * *
19781120 ATCTACTATCTTCGATCTGCTCCCCGTCTAATATAGAGACACCAAATCTGTCAGCTTCGATCTGC
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGC
19781185 TTCGATGTAAACACACGAATGTCAG
66 TTCGATGTAAACACACGAATGTCAG
* * * * * * *
19781210 ATCTACTATCTTTGATCTACTTCCCGTCTAATACAGAGATGCCAAATTTGTAATCTTCAATCTGC
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGC
*
19781275 TTCGATGTAAACACACGAATGTTAG
66 TTCGATGTAAACACACGAATGTCAG
* * *
19781300 ATCTACTATCTCCGATCTGTTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTCGATCTGC
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGC
*
19781365 TTCGATGTAAACACATGAATGTCAG
66 TTCGATGTAAACACACGAATGTCAG
* *
19781390 ATCTACTATCTTCAATCTGCTCCCCGTCTAATACAGAAACGCCAAATCTG
1 ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG
19781440 CTTCCTCGAT
Statistics
Matches: 369, Mismatches: 39, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
89 1 0.00
90 367 0.99
91 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (90 bp):
ATCTACTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTCATCTTCGATCTGC
TTCGATGTAAACACACGAATGTCAG
Found at i:19781227 original size:45 final size:44
Alignment explanation
Indices: 19780992--19781410 Score: 248
Period size: 45 Copynumber: 9.3 Consensus size: 44
19780982 TAAATCTGTC
*
19780992 ATCTTCGATCTGCTTCGATGTAAACACATGAATGTCAGATTTACT
1 ATCTTCGATCTGCTTCGATGTAAACACA-GAATGTCAGATCTACT
* * * * * * *
19781037 ATCTTCGATCTGCTCCCCG-TCTAATACATAG-ACGCCAAATCTGCT
1 ATCTTCGATCTGCT--TCGATGTAA-ACACAGAATGTCAGATCTACT
*
19781082 ATCTTCGATCTGCTTCGATGTAAACACACGAATGTTAGATCTACT
1 ATCTTCGATCTGCTTCGATGTAAACACA-GAATGTCAGATCTACT
* * * * * * *
19781127 ATCTTCGATCTGCTCCCCG-TCTAATATAGAGACA--CCAAATCT-GT
1 ATCTTCGATCTGCT--TCGATGTAA-ACACAGA-ATGTCAGATCTACT
*
19781171 CAGCTTCGATCTGCTTCGATGTAAACACACGAATGTCAGATCTACT
1 -ATCTTCGATCTGCTTCGATGTAAACACA-GAATGTCAGATCTACT
* * * * * * **
19781217 ATCTTTGATCTACTTCCCG-TCT-AATACAGAGATGCCAAAT-TTGT
1 ATCTTCGATCTGCTT--CGATGTAAACACAGA-ATGTCAGATCTACT
* *
19781261 AATCTTCAATCTGCTTCGATGTAAACACACGAATGTTAGATCTACT
1 -ATCTTCGATCTGCTTCGATGTAAACACA-GAATGTCAGATCTACT
* *** * * * * *
19781307 ATCTCCGATCTG-TTCCCCGTCTAATACAGAGATGCCAAATCT-GT
1 ATCTTCGATCTGCTTCGATGT-AAACACAGA-ATGTCAGATCTACT
19781351 CATCTTCGATCTGCTTCGATGTAAACACATGAATGTCAGATCTACT
1 -ATCTTCGATCTGCTTCGATGTAAACACA-GAATGTCAGATCTACT
*
19781397 ATCTTCAATCTGCT
1 ATCTTCGATCTGCT
19781411 CCCCGTCTAA
Statistics
Matches: 272, Mismatches: 72, Indels: 60
0.67 0.18 0.15
Matches are distributed among these distances:
43 14 0.05
44 26 0.10
45 192 0.71
46 26 0.10
47 14 0.05
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (44 bp):
ATCTTCGATCTGCTTCGATGTAAACACAGAATGTCAGATCTACT
Found at i:19792524 original size:14 final size:14
Alignment explanation
Indices: 19792507--19792546 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
19792497 CGACTGGAAT
*
19792507 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
*
19792521 GGTAGGAACAAAAT
1 GGTAGGAACAAAAG
*
19792535 GGTATGAACAAA
1 GGTAGGAACAAA
19792547 TTGGGCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.07, G:0.33, T:0.12
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:19794492 original size:112 final size:116
Alignment explanation
Indices: 19794376--19794586 Score: 270
Period size: 112 Copynumber: 1.9 Consensus size: 116
19794366 AAACTATATG
* * * * ** *
19794376 ATACATACTTTAACATTTTATAC-AAATATAATATAGAAAATGAT-AA-ATAACGACATAAATTA
1 ATACATACATT-ACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTA
* *
19794438 CAT-A-ATATACATTAACATTTCATGCAGATATAATCATAAATAACATAAAT
65 CATAATATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
* *
19794488 ATACATACATTACATTTCATGCAAAATACAACATAGAAAACAATGAATATAACAATATAAATTAC
1 ATACATACATTACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTAC
*
19794553 ATAATATATACAATAATATTTCATGCAAATATAA
66 ATAATATATACAATAACATTTCATGCAAATATAA
19794587 CTTAAAATAA
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
111 9 0.11
112 27 0.33
113 2 0.02
114 17 0.21
115 1 0.01
116 26 0.32
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.31
Consensus pattern (116 bp):
ATACATACATTACATTTCATACAAAATACAACATAGAAAACAATGAATATAACAACATAAATTAC
ATAATATATACAATAACATTTCATGCAAATATAATCATAAATAACATAAAT
Found at i:19794771 original size:14 final size:14
Alignment explanation
Indices: 19794748--19794795 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
19794738 TGAACATATA
*
19794748 AAATATAAAAAAAT
1 AAATACAAAAAAAT
*
19794762 AAATACAAAAAATT
1 AAATACAAAAAAAT
19794776 AAATACAATAAAAAAT
1 AAATAC-A-AAAAAAT
19794792 AAAT
1 AAAT
19794796 GAGGTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 18 0.62
15 1 0.03
16 10 0.34
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:19794787 original size:38 final size:38
Alignment explanation
Indices: 19794718--19794794 Score: 95
Period size: 38 Copynumber: 2.0 Consensus size: 38
19794708 AAAAAGATGC
* * *
19794718 AAAAATAAATAAACAAATTATGAACATATAAAATATAA
1 AAAAATAAATAAAAAAATTATAAACATATAAAAAATAA
19794756 AAAAATAAATACAAAAAATTA-AATACA-ATAAAAAATAA
1 AAAAATAAATA-AAAAAATTATAA-ACATATAAAAAATAA
19794794 A
1 A
19794795 TGAGGTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
38 23 0.68
39 11 0.32
ACGTcount: A:0.73, C:0.05, G:0.01, T:0.21
Consensus pattern (38 bp):
AAAAATAAATAAAAAAATTATAAACATATAAAAAATAA
Found at i:19795120 original size:29 final size:27
Alignment explanation
Indices: 19795042--19795215 Score: 137
Period size: 29 Copynumber: 6.4 Consensus size: 27
19795032 AAAATTATAC
* *
19795042 ATAATAAATAATAAA-AAACAAAATAAT
1 ATAAT-AATAATAAATATATAAAATAAT
* *
19795069 ATAATATATAATAGA-ACA-AAAATAAT
1 ATAATA-ATAATAAATATATAAAATAAT
* *
19795095 ATAATGAATAATATATATAGTAAAATGAT
1 ATAAT-AATAATAAATATA-TAAAATAAT
*
19795124 ATAATATATAATAAATATAT-AAATAAA
1 ATAATA-ATAATAAATATATAAAATAAT
19795151 AT-AT-ATAATAAATATAT-AAATAAT
1 ATAATAATAATAAATATATAAAATAAT
* * *
19795175 ATGATAAATAATACATAAATAAAAATAAT
1 ATAAT-AATAATAAATATAT-AAAATAAT
19795204 ATATATAATAAT
1 ATA-ATAATAAT
19795216 TTTTACATAT
Statistics
Matches: 123, Mismatches: 12, Indels: 22
0.78 0.08 0.14
Matches are distributed among these distances:
24 21 0.17
25 2 0.02
26 23 0.19
27 35 0.28
28 2 0.02
29 38 0.31
30 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (27 bp):
ATAATAATAATAAATATATAAAATAAT
Found at i:19795153 original size:24 final size:24
Alignment explanation
Indices: 19795126--19795198 Score: 105
Period size: 24 Copynumber: 3.1 Consensus size: 24
19795116 AAAATGATAT
19795126 AATATATAATAAATATATAAATAA
1 AATATATAATAAATATATAAATAA
19795150 AATATATAATAAATATATAAATAA
1 AATATATAATAAATATATAAATAA
* *
19795174 TATGATA-AAT-AATACATAAATAA
1 AAT-ATATAATAAATATATAAATAA
19795197 AA
1 AA
19795199 ATAATATATA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
23 13 0.29
24 29 0.64
25 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (24 bp):
AATATATAATAAATATATAAATAA
Found at i:19795157 original size:31 final size:31
Alignment explanation
Indices: 19795064--19795172 Score: 96
Period size: 33 Copynumber: 3.3 Consensus size: 31
19795054 AAAAAACAAA
* *
19795064 ATAATATAATATAT-AATAGAACAAAAATAATAT
1 ATAATA-AATATATAAATA-AA-ATATATAATAT
*
19795097 AATGAAT-AATATATATAGTAAAATGATATAATAT
1 -AT-AATAAATATATA-AATAAAAT-ATATAATAT
*
19795131 ATAATAAATATATAAATAAAATATATAATAA
1 ATAATAAATATATAAATAAAATATATAATAT
19795162 ATATATAAATA
1 ATA-ATAAATA
19795173 ATATGATAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
31 11 0.17
32 17 0.27
33 18 0.28
34 12 0.19
35 6 0.09
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (31 bp):
ATAATAAATATATAAATAAAATATATAATAT
Found at i:19795159 original size:53 final size:52
Alignment explanation
Indices: 19795061--19795213 Score: 159
Period size: 55 Copynumber: 2.8 Consensus size: 52
19795051 AATAAAAAAC
* * *
19795061 AAAATAATATAATATATAATAGAACAAAAATAATATA-ATGAATAATATATATAGT
1 AAAATGATATAATATATAATA-AATAAAAATAATATATAT-AAT-ATATATA-AAT
*
19795116 AAAATGATATAATATATAATAAATATATAAATAAAATATATAATAAATATATAAAT
1 AAAATGATATAATATATAATAAATA-A-AAATAATATATATAAT--ATATATAAAT
*
19795172 AATATGATA-AATA-ATACATAAATAAAAATAATATATATAATA
1 AAAATGATATAATATATA-ATAAATAAAAATAATATATATAATA
19795214 ATTTTTACAT
Statistics
Matches: 87, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
51 1 0.01
53 15 0.17
54 7 0.08
55 32 0.37
56 22 0.25
57 10 0.11
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (52 bp):
AAAATGATATAATATATAATAAATAAAAATAATATATATAATATATATAAAT
Found at i:19795202 original size:17 final size:18
Alignment explanation
Indices: 19795180--19795214 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
19795170 ATAATATGAT
19795180 AAATAATACATA-AATAA
1 AAATAATACATATAATAA
*
19795197 AAATAATATATATAATAA
1 AAATAATACATATAATAA
19795215 TTTTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATAATACATATAATAA
Found at i:19795206 original size:51 final size:53
Alignment explanation
Indices: 19795061--19795214 Score: 143
Period size: 53 Copynumber: 2.9 Consensus size: 53
19795051 AATAAAAAAC
* * * * *
19795061 AAAATAATATAATATATAATAGAACAAAAATAATATAATGA-ATAATATATATAGT
1 AAAATAATATAATAAATAATA-AATAAATA-AATAAAAT-ATATAATAAATATAGT
* * *
19795116 AAAATGATATAATATATAATAAATATATAAATAAAATATATAATAAATATA-T
1 AAAATAATATAATAAATAATAAATAAATAAATAAAATATATAATAAATATAGT
* * *
19795168 -AAATAATATGATAAATAATACATAAATAAAAATAATATATATAATAA
1 AAAATAATATAATAAATAATAAATAAAT--AAATAAAATATATAATAA
19795215 TTTTTACATA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
51 22 0.26
52 2 0.02
53 35 0.42
54 5 0.06
55 20 0.24
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (53 bp):
AAAATAATATAATAAATAATAAATAAATAAATAAAATATATAATAAATATAGT
Found at i:19795227 original size:20 final size:19
Alignment explanation
Indices: 19795202--19795239 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
19795192 AATAAAAATA
*
19795202 ATATATATAATAATTTTTAC
1 ATATATA-AATAATGTTTAC
19795222 ATATATAAATAATGTTTA
1 ATATATAAATAATGTTTA
19795240 TAGTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
ATATATAAATAATGTTTAC
Found at i:19799377 original size:17 final size:17
Alignment explanation
Indices: 19799355--19799391 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
19799345 CACATTTCTT
19799355 GACCCTTATACTTCATA
1 GACCCTTATACTTCATA
*
19799372 GACCCTTGTACTTCATA
1 GACCCTTATACTTCATA
19799389 GAC
1 GAC
19799392 ATCAAAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (17 bp):
GACCCTTATACTTCATA
Found at i:19800873 original size:29 final size:29
Alignment explanation
Indices: 19800837--19800893 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
19800827 AACACATCTC
19800837 CCTTTTGTTCACCTATCCTTGTTTCTCTT
1 CCTTTTGTTCACCTATCCTTGTTTCTCTT
*
19800866 CCTTTTGTTCACCTGTCCTTGTTTCTCT
1 CCTTTTGTTCACCTATCCTTGTTTCTCT
19800894 ACCAGGGAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.05, C:0.32, G:0.09, T:0.54
Consensus pattern (29 bp):
CCTTTTGTTCACCTATCCTTGTTTCTCTT
Found at i:19801084 original size:14 final size:13
Alignment explanation
Indices: 19801056--19801088 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
19801046 CAAAACCCAA
19801056 AAACCT-AAAAAT
1 AAACCTAAAAAAT
19801068 AAACCTAAAAAATT
1 AAACCTAAAAAA-T
19801082 AAACCTA
1 AAACCTA
19801089 TACTTTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
13 5 0.26
14 8 0.42
ACGTcount: A:0.64, C:0.18, G:0.00, T:0.18
Consensus pattern (13 bp):
AAACCTAAAAAAT
Found at i:19802819 original size:40 final size:41
Alignment explanation
Indices: 19802768--19802848 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 41
19802758 GGTCTCAAAA
19802768 TTATTGTTTTAGAAAATTTTT-AAATTTTA-AATTTCTTTAT
1 TTATTGTTTTAG-AAATTTTTAAAATTTTATAATTTCTTTAT
* * *
19802808 TTATTTTTTTAGAATTTTTTAAAAATTTTATAATTTTTTTA
1 TTATTGTTTTAGAAATTTTT-AAAATTTTATAATTTCTTTA
19802849 AAAATATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 7 0.20
40 11 0.31
41 8 0.23
42 9 0.26
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (41 bp):
TTATTGTTTTAGAAATTTTTAAAATTTTATAATTTCTTTAT
Found at i:19802842 original size:19 final size:20
Alignment explanation
Indices: 19802814--19802853 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
19802804 TTATTTATTT
19802814 TTTTAGAA-TTTTTTAAAAA
1 TTTTAGAATTTTTTTAAAAA
*
19802833 TTTTATAATTTTTTTAAAAA
1 TTTTAGAATTTTTTTAAAAA
19802853 T
1 T
19802854 ATAAAATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTAGAATTTTTTTAAAAA
Found at i:19802861 original size:19 final size:20
Alignment explanation
Indices: 19802822--19802862 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
19802812 TTTTTTAGAA
* *
19802822 TTTTTTAAAAATTTTATAAT
1 TTTTTTAAAAATTATAAAAT
19802842 TTTTTTAAAAA-TATAAAAT
1 TTTTTTAAAAATTATAAAAT
19802861 TT
1 TT
19802863 GGAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTTAAAAATTATAAAAT
Found at i:19802890 original size:18 final size:19
Alignment explanation
Indices: 19802853--19802889 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19802843 TTTTTAAAAA
19802853 TATAAA-ATTTGGAATTTT
1 TATAAATATTTGGAATTTT
19802871 TATAAATATTTGGAATTTT
1 TATAAATATTTGGAATTTT
19802890 AAAAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:19802895 original size:18 final size:19
Alignment explanation
Indices: 19802859--19802915 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 19
19802849 AAAATATAAA
*
19802859 ATTTGGAATTTTTATAAAT
1 ATTTGGAATTTTTAAAAAT
19802878 ATTTGGAA-TTTTAAAAATT
1 ATTTGGAATTTTTAAAAA-T
*
19802897 ATATT-GATTTTTTAAAAAT
1 AT-TTGGAATTTTTAAAAAT
19802916 TTTTTTGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 8 0.24
19 14 0.42
20 11 0.33
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (19 bp):
ATTTGGAATTTTTAAAAAT
Found at i:19802929 original size:20 final size:20
Alignment explanation
Indices: 19802879--19802929 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
19802869 TTTATAAATA
*
19802879 TTTGGAATTTTAAAAATTAT
1 TTTGAAATTTTAAAAATTAT
* ** *
19802899 ATTGATTTTTTAAAAATTTT
1 TTTGAAATTTTAAAAATTAT
19802919 TTTGAAATTTT
1 TTTGAAATTTT
19802930 TGTTGAGAGA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (20 bp):
TTTGAAATTTTAAAAATTAT
Found at i:19829324 original size:26 final size:26
Alignment explanation
Indices: 19829253--19829400 Score: 212
Period size: 25 Copynumber: 5.8 Consensus size: 26
19829243 CCTCTTTAAT
*
19829253 AACTGGGGCA-AATCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
19829278 AACTGGGGCA-AAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
19829303 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
19829329 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
19829355 AACT-GGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
19829380 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
19829401 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
25 54 0.50
26 54 0.50
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:19829326 original size:51 final size:52
Alignment explanation
Indices: 19829253--19829400 Score: 248
Period size: 51 Copynumber: 2.9 Consensus size: 52
19829243 CCTCTTTAAT
* *
19829253 AACTGGGGCA-AATCCCTTTTCGGTAAACTGGGGCA-AAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
19829303 AACTGGGGCATAAGCCCTTTTCGGTAAATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
19829355 AACT-GGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
19829401 GCACTTCCTC
Statistics
Matches: 92, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
50 10 0.11
51 64 0.70
52 18 0.20
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:19832310 original size:40 final size:40
Alignment explanation
Indices: 19832253--19832338 Score: 163
Period size: 40 Copynumber: 2.1 Consensus size: 40
19832243 TTATTTGATG
*
19832253 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
19832293 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
19832333 TGGAAT
1 TGGAAT
19832339 GACATCCGGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:19832346 original size:40 final size:40
Alignment explanation
Indices: 19832253--19832353 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
19832243 TTATTTGATG
* *
19832253 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
19832293 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
19832333 TGGAA-TGACATCCGGG-TTAAA
1 TGGAATTG-CATCCGGGCTTAAA
19832354 AACCTGTAGG
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
39 7 0.12
40 51 0.88
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.26
Consensus pattern (40 bp):
TGGAATTGCATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:19832572 original size:20 final size:20
Alignment explanation
Indices: 19832544--19832581 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19832534 TCAAAGAATG
19832544 GTGTATATATATATGTGAGT
1 GTGTATATATATATGTGAGT
* *
19832564 GTGTGTATATGTATGTGA
1 GTGTATATATATATGTGA
19832582 ATGAATACCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (20 bp):
GTGTATATATATATGTGAGT
Found at i:19840309 original size:40 final size:40
Alignment explanation
Indices: 19840251--19840336 Score: 154
Period size: 40 Copynumber: 2.1 Consensus size: 40
19840241 TTATTTGATG
**
19840251 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
19840291 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
19840331 TGGAAT
1 TGGAAT
19840337 GACATCCGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:19840362 original size:39 final size:40
Alignment explanation
Indices: 19840251--19840363 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 40
19840241 TTATTTGATG
* **
19840251 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
*
19840291 TGGAATTGTATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGCATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
19840331 TGGAA-TGACATCC-GGGTTAAAAACCTGCAGGCT
1 TGGAATTG-CATCCAGGCTTAAAGACCCGCAGGCT
19840364 GTGCTAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 19 0.29
40 47 0.71
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TGGAATTGCATCCAGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:19855931 original size:40 final size:40
Alignment explanation
Indices: 19855874--19855986 Score: 158
Period size: 40 Copynumber: 2.9 Consensus size: 40
19855864 TTATTTGATG
*
19855874 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
*
19855914 TGGAATTGTATCCGGGCTTAAAGACCCGTAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* * *
19855954 TGGAA-TGACATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
19855987 GTGCTAAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.24
40 50 0.76
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:19857147 original size:27 final size:27
Alignment explanation
Indices: 19857056--19857139 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
19857046 GGGCATATTC
* *
19857056 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
**
19857083 GTCACTTTACCCTACAGGGGCTTTATA
1 GTCACTTTACCCTACAGGGGCTTTACG
19857110 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
19857137 GTC
1 GTC
19857140 TTTTTACCTA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
27 49 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:19857156 original size:54 final size:53
Alignment explanation
Indices: 19857056--19857177 Score: 124
Period size: 54 Copynumber: 2.2 Consensus size: 53
19857046 GGGCATATTC
*
19857056 GTCATTTTACCATACAGGGGTATTACGGTCACTTTACCCTACAGGGGCT-TTATA
1 GTCA-TTTACCCTACAGGGGTATTACGGTCACTTTACCCTACAGGGG-TATTATA
** * *
19857110 GTCACTTTACCCTACAGGGGCT-TTACGGTCTTTTTA-CCTATTAGGGGTATTTTA
1 GTCA-TTTACCCTACAGGGG-TATTACGGTCACTTTACCCTA-CAGGGGTATTATA
19857164 GTCATTTCACCCTA
1 GTCATTT-ACCCTA
19857178 TAAGGGTGTT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
53 8 0.14
54 49 0.84
55 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
GTCATTTACCCTACAGGGGTATTACGGTCACTTTACCCTACAGGGGTATTATA
Found at i:19857231 original size:27 final size:27
Alignment explanation
Indices: 19857201--19857457 Score: 182
Period size: 27 Copynumber: 9.4 Consensus size: 27
19857191 GTAAATCTAC
*
19857201 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* *
19857228 AAACCAATGGTATTTCT-ATAATTTT-T
1 AAACCAAGGGTATTT-TGGTAATTTTGT
*
19857254 AGAAAGTCAAGGGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TGGTAATTTTGT
* **
19857284 AAATC-AGGTGTATTTTGGTAATTTTAC
1 AAACCAAGG-GTATTTTGGTAATTTTGT
*** * **
19857311 AAATTGAGGGTATTTCGGTAATTTCAT
1 AAACCAAGGGTATTTTGGTAATTTTGT
**
19857338 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTTGGTAATTTTGT
* *
19857365 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
*
19857392 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* * *** *
19857419 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAACCAAGGGTATTTTGGTAATTTTGT
* *
19857446 AAATCGAGGGTA
1 AAACCAAGGGTA
19857458 AAACGGTAAT
Statistics
Matches: 190, Mismatches: 30, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
26 7 0.04
27 152 0.80
28 11 0.06
29 19 0.10
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTTGGTAATTTTGT
Found at i:19857351 original size:54 final size:53
Alignment explanation
Indices: 19857180--19857430 Score: 209
Period size: 54 Copynumber: 4.6 Consensus size: 53
19857170 TCACCCTATA
* * * *** **
19857180 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAACC
* * * ** * *
19857233 AATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC
1 -AGGGTATTT-TGGTAA-TTTTACAAA-TTGAGGGTATTTCGGTAATTTTGTAAACC
**
19857289 AGGTGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCATAAACC
1 AGG-GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAACC
* *
19857343 AGTGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACC
1 AG-GGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTTGTAAACC
* ** *
19857397 AAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 -AGGGTATTTTGGTAATTTTACAAATTGAGGGTA
19857431 AAATGGTAAT
Statistics
Matches: 160, Mismatches: 28, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
53 1 0.01
54 103 0.64
55 22 0.14
56 34 0.21
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTGTAAACC
Found at i:19857402 original size:81 final size:81
Alignment explanation
Indices: 19857179--19857415 Score: 212
Period size: 81 Copynumber: 2.9 Consensus size: 81
19857169 TTCACCCTAT
* * * * * * *
19857179 AAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTTAGTAATTTTGTAAACCAATGGTATTTC
1 AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
*
19857244 TA-TAATTTTTAGAAAGTC
66 -AGTAA-TTTCAGAAAG-C
** * ** ***
19857262 AAGGGTATTTCT-GTAATTTTGTAAA-TCAGGTGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 AAGGGTATTT-TGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
* *
19857325 TCGGTAATTTCATAAA-C
64 TCAGTAATTTCAGAAAGC
*
19857342 CAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 AAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
*
19857407 TAGTAATTT
65 CAGTAATTT
19857416 TGTAAATCGA
Statistics
Matches: 119, Mismatches: 29, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
80 4 0.03
81 56 0.47
82 8 0.07
83 50 0.42
84 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
AGTAATTTCAGAAAGC
Found at i:19857438 original size:54 final size:54
Alignment explanation
Indices: 19857274--19857619 Score: 250
Period size: 54 Copynumber: 6.4 Consensus size: 54
19857264 GGGTATTTCT
* * **
19857274 GTAATTTTGTAAATC-AGGTGTATTTTGGTAATTTTACAAATTGAGGGT-ATTTCG
1 GTAATTTTGTAAATCGAGG-GTATTTTGGTAATTTTATAAATCGAGGGTAAAAT-G
** * * * ***
19857328 GTAATTTCATAAA-CCAGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTGTAAATCGAG-GGTATTTTGGTAATTTTATAAATCGA-GGGTAAAATG
* * * *
19857382 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATG
* **** * *
19857436 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATG
* * **** * * * *
19857490 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATG
* **** * *
19857544 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATG
* *
19857598 GTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTA
19857620 AAACGGTAAT
Statistics
Matches: 249, Mismatches: 37, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.01
54 238 0.96
55 9 0.04
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.34
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATG
Found at i:19857457 original size:81 final size:81
Alignment explanation
Indices: 19857381--19857639 Score: 329
Period size: 81 Copynumber: 3.2 Consensus size: 81
19857371 GGGGTATTTT
* * * *
19857381 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
19857446 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * * *** * *
19857462 GGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
*
19857527 AAATCGAAGGTAAAAC
66 AAATCGAGGGTAAAAC
* **** * * *
19857543 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTAT
1 GGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
19857608 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
19857624 GGTAATTTTGTAAATC
1 GGTAATTTTGTAAATC
19857640 TAAACAGGGA
Statistics
Matches: 157, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 157 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:19857458 original size:27 final size:27
Alignment explanation
Indices: 19857409--19857639 Score: 354
Period size: 27 Copynumber: 8.6 Consensus size: 27
19857399 GGGTATTTTA
* *
19857409 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
19857436 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
19857463 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
19857490 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
19857517 GTAATTCTGTAAATCGAAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
19857544 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
19857571 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
19857598 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
19857625 GTAATTTTGTAAATC
1 GTAATTCTGTAAATC
19857640 TAAACAGGGA
Statistics
Matches: 187, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 187 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:19860871 original size:47 final size:47
Alignment explanation
Indices: 19860812--19860933 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
19860802 GGATTGGCAC
*
19860812 TAAGACAAGGATACCATGTAAGACCATGTTTGGAGCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
19860859 TAAGACAAGGATACCATGAAAGACCATGTTTGGAACATGGCATTTTG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
19860906 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
19860934 ATGGTATTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:19861010 original size:55 final size:54
Alignment explanation
Indices: 19860934--19861099 Score: 192
Period size: 55 Copynumber: 3.1 Consensus size: 54
19860924 TAAGACCATG
* * * * *
19860934 ATGGTATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGAC
1 ATGGAATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
** * * *
19860988 ATGGAATTGATGAGTTACTATAAAGTAAAGG-TCCCACGTAAGACCATGCCAAGGC
1 ATGGAATTGATGAGTT-CTAT-AAGGCAAGGATACCACGTAAGACCATGTCAAGAC
* *
19861043 ATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
1 ATGGAATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
19861096 ATGG
1 ATGG
19861100 TAATGGTAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
52 7 0.08
53 27 0.29
54 15 0.16
55 36 0.39
56 7 0.08
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
ATGGAATTGATGAGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGAC
Found at i:19861099 original size:53 final size:54
Alignment explanation
Indices: 19860946--19861112 Score: 187
Period size: 53 Copynumber: 3.1 Consensus size: 54
19860936 GGTATTGATA
* * * *
19860946 AGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGAATTGATG
1 AGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAATTGGTG
** * * * *
19861000 AGTTACTATAAAGTAAAGG-TCCCACGTAAGACCATGCCAAGGCATGGCATTGGTG
1 AGTT-CTAT-AAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAATTGGTG
*
19861055 AGTTC-ATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGTAA-TGGTA
1 AGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGG-AATTGGTG
19861108 AGTTC
1 AGTTC
19861113 AAAAAGGAAA
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
52 7 0.08
53 36 0.39
54 6 0.07
55 36 0.39
56 7 0.08
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AGTTCTATAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGGAATTGGTG
Found at i:19867577 original size:47 final size:47
Alignment explanation
Indices: 19867518--19867638 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
19867508 GGATTGGCAC
*
19867518 TAAGACAAGGATACCATGTAAGACCATGTTTGGAGCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
19867565 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
19867612 TAAGATAAGGATATCATGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
19867639 CCCAAGGCAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:19867746 original size:55 final size:54
Alignment explanation
Indices: 19867618--19867801 Score: 228
Period size: 55 Copynumber: 3.4 Consensus size: 54
19867608 TTGGTAAGAT
* * *
19867618 AAGGATATCATGTAAGACCATCCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * * *
19867672 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGG-C
* *
19867728 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *
19867780 AAGGATGCCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
19867802 TGGTAATGGT
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.04
53 21 0.19
54 41 0.37
55 42 0.38
56 4 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:19871804 original size:34 final size:34
Alignment explanation
Indices: 19871748--19871825 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
19871738 AGTGATAGTC
* * *
19871748 CAGTATCAGTTAGGACCGTAGCCCATTATAGTAT
1 CAGTATCAGTTAGGACCGTAGCCCAATACAGTAA
* *
19871782 CAGTATCAGTGT-GGGCCTTAGCCCAATACAGTAA
1 CAGTATCAGT-TAGGACCGTAGCCCAATACAGTAA
*
19871816 CAGTAACAGT
1 CAGTATCAGT
19871826 AATGCAAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTTAGGACCGTAGCCCAATACAGTAA
Found at i:19872363 original size:17 final size:18
Alignment explanation
Indices: 19872341--19872374 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
19872331 CACCCATGTG
19872341 GGGCCCACA-AGCCCATA
1 GGGCCCACACAGCCCATA
19872358 GGGCCCACACAGCCCAT
1 GGGCCCACACAGCCCAT
19872375 TTCAGCCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.26, C:0.44, G:0.24, T:0.06
Consensus pattern (18 bp):
GGGCCCACACAGCCCATA
Found at i:19876815 original size:16 final size:15
Alignment explanation
Indices: 19876785--19876823 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
19876775 TATGCAAAGT
* *
19876785 TAATAATAATTAATA
1 TAATTATAATGAATA
19876800 TATATTATAATGAATA
1 TA-ATTATAATGAATA
19876816 TAATTATA
1 TAATTATA
19876824 TACTAGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TAATTATAATGAATA
Found at i:19876825 original size:22 final size:19
Alignment explanation
Indices: 19876787--19876824 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
19876777 TGCAAAGTTA
19876787 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
19876806 ATAATGAATATAAT-TATAT
1 ATAAT-AAT-TAATATATAT
19876825 ACTAGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:19899363 original size:47 final size:47
Alignment explanation
Indices: 19899272--19899629 Score: 477
Period size: 47 Copynumber: 7.6 Consensus size: 47
19899262 TAATTGAATA
*
19899272 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
*
19899320 AAAGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19899367 AAAGTGAACATGTGTATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
* * *
19899415 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19899462 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19899509 AAAGTGAACATGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
19899556 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
**
19899603 AATGTGAA-AGTGTATAAATGTGATAAG
1 AATGTGAACA-TGTATATGTGTGATAAG
19899630 TCCCGAAGGG
Statistics
Matches: 280, Mismatches: 27, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.00
47 218 0.78
48 60 0.21
49 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:19899804 original size:37 final size:37
Alignment explanation
Indices: 19899748--19899827 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
19899738 CCGGGCTCTA
* * *
19899748 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
19899785 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
19899822 AAGACT
1 AAGACT
19899828 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:19901561 original size:40 final size:40
Alignment explanation
Indices: 19901504--19901886 Score: 576
Period size: 40 Copynumber: 9.6 Consensus size: 40
19901494 TCGAATGATG
* *
19901504 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
19901544 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
19901584 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
19901624 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
19901664 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
19901704 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
19901744 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
19901784 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
19901824 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
19901864 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
19901887 ATCATGCTGG
Statistics
Matches: 316, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.00
40 295 0.93
41 20 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Done.