Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 7 of 320
Found at i:1875516 original size:197 final size:197
Alignment explanation
Indices: 1875177--1875572 Score: 659
Period size: 197 Copynumber: 2.0 Consensus size: 197
1875167 CAAACATAAC
* *
1875177 ATAAACACTTATGTCACACCCAAAAATGTTAAAAGAGAAGTACAACAGTAATTTTGGGTATCTAA
1 ATAAACACTTATGTCACACCCAAAAATGTTAAAAGAGAAGTACAACAGTAATTCTAGGTATCTAA
1875242 TTATAAAACTTCCTATTTATAAGGGTATTAGTGTAATTACATGAATCTTGCTAACTGATTTGGTA
66 TTATAAAACTTCCTATTTATAAGGGTATTAGTGTAATTACATGAATCTTGCTAACTGATTTGGTA
* * *
1875307 ATTGGCCAGATTTCAACTATTAGTTTCGTTACATTAGAACT-AGGTATTTGCTTTAGTGGGAAAT
131 ATTGGCCAGATTTCAACTATTAGTTTCGTTAAATTAGAACTGA-GCATTTACTTTAGTGGGAAAT
1875371 ATT
195 ATT
* *
1875374 ATAAACACTTATGTCACACCCAAAAATGTTAAAGGATAAGTACAACAGTAATTCTAGGTATCTAA
1 ATAAACACTTATGTCACACCCAAAAATGTTAAAAGAGAAGTACAACAGTAATTCTAGGTATCTAA
* * * **
1875439 TTATAAAACTTTCTGTTTATAAGGGTCTTAGTGTAATTATGTGAATCTTGCTAACTGATTTGGTA
66 TTATAAAACTTCCTATTTATAAGGGTATTAGTGTAATTACATGAATCTTGCTAACTGATTTGGTA
*
1875504 ATTGGTCAGATTTCAACTATTAGTTTCGTTAAATTAGAACTGAGCATTTACTTTAGTGGGAAATA
131 ATTGGCCAGATTTCAACTATTAGTTTCGTTAAATTAGAACTGAGCATTTACTTTAGTGGGAAATA
1875569 TT
196 TT
1875571 AT
1 AT
1875573 GATAAAGAAC
Statistics
Matches: 185, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
197 184 0.99
198 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (197 bp):
ATAAACACTTATGTCACACCCAAAAATGTTAAAAGAGAAGTACAACAGTAATTCTAGGTATCTAA
TTATAAAACTTCCTATTTATAAGGGTATTAGTGTAATTACATGAATCTTGCTAACTGATTTGGTA
ATTGGCCAGATTTCAACTATTAGTTTCGTTAAATTAGAACTGAGCATTTACTTTAGTGGGAAATA
TT
Found at i:1876472 original size:32 final size:32
Alignment explanation
Indices: 1876436--1876503 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
1876426 GTGTGGAGGT
* * *
1876436 ATGTAATGGTGGATGGAAGTTGAAGATATGTC
1 ATGTAATAGCGGATGGAAGTTGAAGAAATGTC
1876468 ATGTAATAGCGGATGGAAGTTGAAGAAATGTC
1 ATGTAATAGCGGATGGAAGTTGAAGAAATGTC
1876500 ATGT
1 ATGT
1876504 TGTGCACCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.04, G:0.32, T:0.29
Consensus pattern (32 bp):
ATGTAATAGCGGATGGAAGTTGAAGAAATGTC
Found at i:1877808 original size:20 final size:19
Alignment explanation
Indices: 1877783--1877824 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1877773 AAGGGTATGT
1877783 TTTATTAGTAACTTACTAAG
1 TTTATTAG-AACTTACTAAG
* *
1877803 TTTATTCGAACTTACTTAG
1 TTTATTAGAACTTACTAAG
1877822 TTT
1 TTT
1877825 TTGTTATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.50
Consensus pattern (19 bp):
TTTATTAGAACTTACTAAG
Found at i:1878828 original size:17 final size:17
Alignment explanation
Indices: 1878800--1878834 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
1878790 TTCACTACAT
1878800 TTTTATTTCACATATTCA
1 TTTTATTTCACA-ATTCA
1878818 TTTTA-TTCACAATTCA
1 TTTTATTTCACAATTCA
1878834 T
1 T
1878835 AAATTACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 6 0.35
18 5 0.29
ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTATTTCACAATTCA
Found at i:1879592 original size:17 final size:17
Alignment explanation
Indices: 1879554--1879597 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1879544 GAAAATTTTC
**
1879554 TTTCTTT-TTCTCTGTT
1 TTTCTTTCTTCTCTCCT
1879570 TCTTCTTTCTTCTCTCCT
1 T-TTCTTTCTTCTCTCCT
1879588 TTTCTTTCTT
1 TTTCTTTCTT
1879598 TTTTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 15 0.62
18 8 0.33
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTCTTTCTTCTCTCCT
Found at i:1879596 original size:21 final size:18
Alignment explanation
Indices: 1879549--1879600 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
1879539 TTAGGGAAAA
1879549 TTTTCTTTCTTTTTCTCT
1 TTTTCTTTCTTTTTCTCT
*
1879567 GTTTC-TTCTTTCTTCTCT
1 TTTTCTTTCTTT-TTCTCT
1879585 CCTTTTCTTTCTTTTT
1 --TTTTCTTTCTTTTT
1879601 TTATTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 6 0.21
18 10 0.36
20 6 0.21
21 6 0.21
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTCTTTCTTTTTCTCT
Found at i:1881945 original size:31 final size:27
Alignment explanation
Indices: 1881890--1881946 Score: 69
Period size: 31 Copynumber: 2.0 Consensus size: 27
1881880 TCTATACCTA
*
1881890 ATTTTTTTTAAAATATAATTATTATTT
1 ATTTTTTTTAAAATATAATAATTATTT
1881917 ATTTTTTTCGTAATAATCATAATAATTATT
1 ATTTTTTT--TAA-AAT-ATAATAATTATT
1881947 CTTTGCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 8 0.32
29 3 0.12
30 3 0.12
31 11 0.44
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (27 bp):
ATTTTTTTTAAAATATAATAATTATTT
Found at i:1887559 original size:59 final size:59
Alignment explanation
Indices: 1887494--1887681 Score: 159
Period size: 59 Copynumber: 3.2 Consensus size: 59
1887484 ATTTTATTAA
1887494 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
* * ** * * * ** * * * *
1887553 ATCATATATTATGATTTTAGTA-AATTCATA-TAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA-AATTA-TATTTTA-TAGT
* * *
1887613 ATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTTTATAGT
1887672 ATCATATATT
1 ATCATATATT
1887682 ATGATTTGAG
Statistics
Matches: 92, Mismatches: 29, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
57 5 0.05
58 11 0.12
59 36 0.39
60 25 0.27
61 10 0.11
62 4 0.04
63 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
Found at i:1887608 original size:119 final size:120
Alignment explanation
Indices: 1887483--1887771 Score: 501
Period size: 119 Copynumber: 2.4 Consensus size: 120
1887473 AATTATTTTA
*
1887483 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
* *
1887548 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
1887602 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTT
1887666 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
1887722 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
1887772 GTTTAAATAT
Statistics
Matches: 161, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
119 110 0.68
120 51 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:1887629 original size:18 final size:18
Alignment explanation
Indices: 1887603--1887658 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 18
1887593 GATTATTAGA
1887603 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
1887620 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
1887636 A-TTTAA-T-AATTAT-T
1 ATTTTAATTAAATTATAT
1887650 ATTTTAATT
1 ATTTTAATT
1887659 TATATTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.06
14 3 0.09
15 12 0.35
16 6 0.18
17 5 0.15
18 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:1887739 original size:59 final size:58
Alignment explanation
Indices: 1887557--1887739 Score: 155
Period size: 56 Copynumber: 3.1 Consensus size: 58
1887547 TATAGTATCA
*
1887557 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
1887615 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATTATTATT-TTAATTTATATTTTA-TAGTAT
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAA-TATTATTATTAA--GA-ATTTTATTA-AAT
*
1887674 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
1887735 TATAT
1 TATAT
1887740 ATTTTAATTA
Statistics
Matches: 96, Mismatches: 12, Indels: 33
0.68 0.09 0.23
Matches are distributed among these distances:
55 7 0.07
56 15 0.16
57 8 0.08
58 7 0.07
59 13 0.14
61 12 0.12
62 11 0.11
63 14 0.15
64 9 0.09
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:1887751 original size:18 final size:17
Alignment explanation
Indices: 1887723--1887757 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1887713 ATTATTAAGA
*
1887723 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
1887740 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
1887758 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:1887865 original size:147 final size:149
Alignment explanation
Indices: 1887711--1887985 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
1887701 ATAAGAATAT
*
1887711 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
1887776 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
1887839 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
1887858 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* *
1887923 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
1887986 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:1887898 original size:18 final size:17
Alignment explanation
Indices: 1887870--1887904 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1887860 ATTATTAAGA
*
1887870 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
1887887 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
1887905 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:1888115 original size:44 final size:45
Alignment explanation
Indices: 1888066--1888160 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
1888056 TTACACCTCT
* * *
1888066 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
** *
1888110 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
1888155 ATTACA
1 ATTACA
1888161 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACATCTATTCC
Found at i:1888160 original size:16 final size:16
Alignment explanation
Indices: 1888141--1888208 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
1888131 GATTTGCTAT
* * *
1888141 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
1888157 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1888173 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1888189 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1888205 TACA
1 TACA
1888209 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:1891502 original size:15 final size:15
Alignment explanation
Indices: 1891467--1891508 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1891457 TTAAGAATTT
*
1891467 TATTAAATTAT-ATA
1 TATTTAATTATAATA
1891481 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
1891495 TATTTAATAATAAT
1 TATTTAATTATAAT
1891509 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:1891744 original size:45 final size:44
Alignment explanation
Indices: 1891661--1891751 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
1891651 ACCTCTATTC
* * *
1891661 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACATCTATTCCAATA
*** *
1891705 CATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCCAATA
1 CATTCAACCAAACACAAGA-TTACTATTACACATCTATTCCAATA
1891750 CA
1 CA
1891752 CCTCTAATCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACATCTATTCCAATA
Found at i:1891757 original size:16 final size:16
Alignment explanation
Indices: 1891732--1891799 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
1891722 GATTTGCTAT
* *
1891732 TACACATCTATTCCAA
1 TACACCTCTAATCCAA
1891748 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
1891764 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
1891780 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1891796 TACA
1 TACA
1891800 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:1891774 original size:32 final size:32
Alignment explanation
Indices: 1891732--1891799 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
1891722 GATTTGCTAT
1891732 TACACATCTATTCCAATACACCTCTAATCCAA
1 TACACATCTATTCCAATACACCTCTAATCCAA
*
1891764 TACACCTCTATTCCAATACACCTCTAATCCAA
1 TACACATCTATTCCAATACACCTCTAATCCAA
1891796 TACA
1 TACA
1891800 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (32 bp):
TACACATCTATTCCAATACACCTCTAATCCAA
Found at i:1894898 original size:3 final size:3
Alignment explanation
Indices: 1894890--1894915 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1894880 TCCACCCACA
1894890 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
1894916 ATAAGTGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1897441 original size:27 final size:27
Alignment explanation
Indices: 1897403--1897458 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
1897393 ATAGTTCCAT
1897403 TTCTCAGAGTTTGATCTTACAGATAGA
1 TTCTCAGAGTTTGATCTTACAGATAGA
1897430 TTCTCAGAGTTTGATCTTACAGATAGA
1 TTCTCAGAGTTTGATCTTACAGATAGA
1897457 TT
1 TT
1897459 TAAATCTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (27 bp):
TTCTCAGAGTTTGATCTTACAGATAGA
Found at i:1904661 original size:50 final size:46
Alignment explanation
Indices: 1904590--1904705 Score: 133
Period size: 46 Copynumber: 2.4 Consensus size: 46
1904580 TGTCTTTGAC
** * *
1904590 ATGGACTTACATGAATTATTCCTGCCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCC----ATATATCTAAT
* * *
1904640 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCATATATCTAAT
1904686 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
1904706 TCTGTCCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 29 0.50
50 29 0.50
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCATATATCTAAT
Found at i:1911497 original size:26 final size:25
Alignment explanation
Indices: 1911467--1911525 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
1911457 TTACTTAAAA
1911467 GATATTTTGAA-AAAAATAAATTAATT
1 GATATTTTGAAGAAAAA-AAATT-ATT
* *
1911493 GATATATTTTAAGAAAAAAAATTCTT
1 GATAT-TTTGAAGAAAAAAAATTATT
1911519 GATATTT
1 GATATTT
1911526 GAGAAGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 12 0.41
27 10 0.34
28 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (25 bp):
GATATTTTGAAGAAAAAAAATTATT
Found at i:1911509 original size:28 final size:26
Alignment explanation
Indices: 1911468--1911523 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
1911458 TACTTAAAAG
1911468 ATATTTTGAAAAAAATAAATTAATTGAT
1 ATATTTTGAAAAAAA-AAATT-ATTGAT
*
1911496 ATATTTT-AAGAAAAAAAATTCTTGAT
1 ATATTTTGAA-AAAAAAAATTATTGAT
1911522 AT
1 AT
1911524 TTGAGAAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 7 0.27
27 7 0.27
28 12 0.46
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.39
Consensus pattern (26 bp):
ATATTTTGAAAAAAAAAATTATTGAT
Found at i:1915326 original size:13 final size:13
Alignment explanation
Indices: 1915295--1915320 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1915285 CAATTAAATC
1915295 AAATTTCTTTTTA
1 AAATTTCTTTTTA
1915308 AAATTTCTTTTTA
1 AAATTTCTTTTTA
1915321 TCATTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (13 bp):
AAATTTCTTTTTA
Found at i:1925025 original size:21 final size:22
Alignment explanation
Indices: 1924963--1925036 Score: 62
Period size: 21 Copynumber: 3.3 Consensus size: 22
1924953 TTAACTTTAA
* *
1924963 AAAATTTGAA-ATATATATTTG
1 AAAATTTTAATATATATATTTT
*
1924984 AAATATTTTATTAATATATATTTTTT
1 AAA-A--TT-TTAATATATATATTTT
1925010 AAAATTTTAA-ATATATATTTT
1 AAAATTTTAATATATATATTTT
*
1925031 GAAATT
1 AAAATT
1925037 ATTTTTTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
21 18 0.42
22 5 0.12
23 2 0.05
24 2 0.05
25 4 0.09
26 12 0.28
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
AAAATTTTAATATATATATTTT
Found at i:1925042 original size:25 final size:24
Alignment explanation
Indices: 1924971--1925042 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
1924961 AAAAAATTTG
1924971 AAATATATA-TTTGAAATATTTTAT
1 AAATATATATTTTGAAATATTTT-T
* *
1924995 TAATATATATTTTTTAAA-A-TTTT
1 AAATATATA-TTTTGAAATATTTTT
1925018 AAATATATATTTTGAAATTATTTTT
1 AAATATATATTTTGAAA-TATTTTT
1925043 TTAAATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 7 0.18
23 9 0.23
24 12 0.31
25 5 0.13
26 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (24 bp):
AAATATATATTTTGAAATATTTTT
Found at i:1925050 original size:21 final size:20
Alignment explanation
Indices: 1925026--1925083 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
1925016 TTAAATATAT
1925026 ATTTTGAAATTATTTTTTTAA
1 ATTTT-AAATTATTTTTTTAA
1925047 ATTTTAAA-TATTATTTTTTAA
1 ATTTTAAATTA-T-TTTTTTAA
*
1925068 ATATTAAA-TATTTTTT
1 ATTTTAAATTATTTTTT
1925084 AATATTATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 7 0.21
20 5 0.15
21 22 0.65
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTAAATTATTTTTTTAA
Found at i:1925096 original size:20 final size:19
Alignment explanation
Indices: 1925039--1925098 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
1925029 TTGAAATTAT
*
1925039 TTTTTTAAATTTTAAATATTA
1 TTTTTTAAATTATAAA-A-TA
*
1925060 TTTTTTAAA-TATTAAATA
1 TTTTTTAAATTATAAAATA
1925078 TTTTTTAATATTATAAAATA
1 TTTTTTAA-ATTATAAAATA
1925098 T
1 T
1925099 GTAAATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 10 0.29
19 2 0.06
20 13 0.38
21 9 0.26
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTTAAATTATAAAATA
Found at i:1925324 original size:21 final size:19
Alignment explanation
Indices: 1925290--1925328 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 19
1925280 AATAAAAAAA
1925290 TTAAAAAAAGATTTATTTG
1 TTAAAAAAAGATTTATTTG
1925309 TTAAAAAAATGAATTTATTT
1 TTAAAAAAA-G-ATTTATTT
1925329 AAAAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 1 0.06
21 8 0.44
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (19 bp):
TTAAAAAAAGATTTATTTG
Found at i:1925345 original size:13 final size:13
Alignment explanation
Indices: 1925327--1925375 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
1925317 ATGAATTTAT
* *
1925327 TTAAAAATATATA
1 TTAAAAATAAAAA
1925340 TTAAAAATTAAAAA
1 TTAAAAA-TAAAAA
* *
1925354 TTGAAATTAAAAA
1 TTAAAAATAAAAA
1925367 TTAAAAATA
1 TTAAAAATA
1925376 TATAATATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 20 0.69
14 9 0.31
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
TTAAAAATAAAAA
Found at i:1925351 original size:7 final size:7
Alignment explanation
Indices: 1925339--1925374 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
1925329 AAAAATATAT
1925339 ATTAAAA
1 ATTAAAA
1925346 ATTAAAA
1 ATTAAAA
*
1925353 ATT-GAA
1 ATTAAAA
1925359 ATTAAAA
1 ATTAAAA
1925366 ATTAAAA
1 ATTAAAA
1925373 AT
1 AT
1925375 ATATAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
ATTAAAA
Found at i:1925352 original size:20 final size:20
Alignment explanation
Indices: 1925327--1925379 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
1925317 ATGAATTTAT
1925327 TTAAAAATATATATTAAAAA
1 TTAAAAATATATATTAAAAA
*
1925347 TTAAAAAT-TGAAATTAAAAA
1 TTAAAAATAT-ATATTAAAAA
1925367 TTAAAAATATATA
1 TTAAAAATATATA
1925380 ATATAACTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (20 bp):
TTAAAAATATATATTAAAAA
Found at i:1925424 original size:18 final size:17
Alignment explanation
Indices: 1925397--1925441 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 17
1925387 TAGTCACATC
1925397 ATATTTTTTTAACAAAT
1 ATATTTTTTTAACAAAT
1925414 ATATATTTTTTAACAAAT
1 ATAT-TTTTTTAACAAAT
1925432 AT-TTTTTTTA
1 ATATTTTTTTA
1925442 TTAATTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.26
17 5 0.19
18 15 0.56
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTTTTAACAAAT
Found at i:1925491 original size:18 final size:17
Alignment explanation
Indices: 1925470--1925530 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
1925460 TTTTTTTACT
1925470 TTTTTATTAACTTTTATC
1 TTTTT-TTAACTTTTATC
* *
1925488 TTTTTCTTTAAATTTTTTTC
1 -TTTT-TTT-AACTTTTATC
* *
1925508 TTTTTTTAAGTTTTATA
1 TTTTTTTAACTTTTATC
1925525 TTTTTT
1 TTTTTT
1925531 CTTATTTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 13 0.37
18 3 0.09
19 10 0.29
20 9 0.26
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTTTTAACTTTTATC
Found at i:1925492 original size:20 final size:20
Alignment explanation
Indices: 1925469--1925515 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
1925459 TTTTTTTTAC
*
1925469 TTTTTTATTAACTTTTATCT
1 TTTTTTATAAACTTTTATCT
* *
1925489 TTTTCTT-TAAATTTTTTTCT
1 TTTT-TTATAAACTTTTATCT
1925509 TTTTTTA
1 TTTTTTA
1925516 AGTTTTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
19 2 0.09
20 18 0.82
21 2 0.09
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTATAAACTTTTATCT
Found at i:1925557 original size:13 final size:13
Alignment explanation
Indices: 1925532--1925579 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
1925522 ATATTTTTTC
1925532 TTATTTTATTTTAT
1 TTATTTTA-TTTAT
1925546 TTATTTTATTTAT
1 TTATTTTATTTAT
*
1925559 TTATTTTTTGTTAT
1 TTATTTTAT-TTAT
*
1925573 TAATTTT
1 TTATTTT
1925580 GAAATTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 13 0.42
14 18 0.58
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:1925617 original size:4 final size:4
Alignment explanation
Indices: 1925608--1925656 Score: 55
Period size: 4 Copynumber: 11.8 Consensus size: 4
1925598 ATTTGAAATG
*
1925608 TTTA TTTA TTTTA TTTA TTT- TTTC TTTA TCTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA -TTTA TTTA TTTA TTTA TTTA --TTTA TTTA TTTA TTTA TTT
1925657 TTATTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
3 3 0.08
4 29 0.73
5 4 0.10
6 4 0.10
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:1925659 original size:18 final size:17
Alignment explanation
Indices: 1925612--1925675 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 17
1925602 GAAATGTTTA
*
1925612 TTTATTT-TATTTATTT
1 TTTATTTATTTTTATTT
* *
1925628 TTTCTTTATCTTTATTT
1 TTTATTTATTTTTATTT
1925645 ATTTATTTATTTTTATTT
1 -TTTATTTATTTTTATTT
*
1925663 TATTATTAATTTT
1 T-TTATTTATTTT
1925676 AAAAAACTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
16 6 0.15
17 9 0.22
18 25 0.62
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTATTTATTTTTATTT
Found at i:1925669 original size:14 final size:15
Alignment explanation
Indices: 1925612--1925666 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
1925602 GAAATGTTTA
1925612 TTTATTTTATTTATT
1 TTTATTTTATTTATT
*
1925627 TTT-TCTTTATCTT-TA
1 TTTAT-TTTAT-TTATT
1925642 TTTA-TTTATTTATT
1 TTTATTTTATTTATT
1925656 TTTATTTTATT
1 TTTATTTTATT
1925667 ATTAATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
13 2 0.06
14 11 0.33
15 18 0.55
16 2 0.06
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTATTTTATTTATT
Found at i:1925745 original size:21 final size:23
Alignment explanation
Indices: 1925704--1925749 Score: 78
Period size: 21 Copynumber: 2.1 Consensus size: 23
1925694 ATTTGAAATG
1925704 TTTTATAATATATATTTTTTAAA
1 TTTTATAATATATATTTTTTAAA
1925727 TTTTA-AATATATA-TTTTTAAA
1 TTTTATAATATATATTTTTTAAA
1925748 TT
1 TT
1925750 ATTTTTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
22 8 0.35
23 5 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTATAATATATATTTTTTAAA
Found at i:1925754 original size:24 final size:23
Alignment explanation
Indices: 1925704--1925747 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
1925694 ATTTGAAATG
*
1925704 TTTTATAATATATATTTTTTAAA
1 TTTTATAATATATATTTTTAAAA
1925727 TTTTA-AATATATATTTTTAAA
1 TTTTATAATATATATTTTTAAA
1925748 TTATTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTATAATATATATTTTTAAAA
Found at i:1925763 original size:34 final size:32
Alignment explanation
Indices: 1925716--1925818 Score: 145
Period size: 33 Copynumber: 3.1 Consensus size: 32
1925706 TTATAATATA
1925716 TATTTTTTAAATTTTAAATATATATTTTTAAAT
1 TATTTTTTAAATTTTAAATAT-TATTTTTAAAT
1925749 TATTTTTCTAAATTTTAAATATTATTTTTAAAT
1 TATTTTT-TAAATTTTAAATATTATTTTTAAAT
* *
1925782 TATTGTTTAAAAATTTAAATATTATTTTCT-AAT
1 TATT-TTTTAAATTTTAAATATTATTTT-TAAAT
1925815 TATT
1 TATT
1925819 AAACATATTT
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
33 47 0.72
34 18 0.28
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (32 bp):
TATTTTTTAAATTTTAAATATTATTTTTAAAT
Found at i:1925766 original size:20 final size:20
Alignment explanation
Indices: 1925741--1925782 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1925731 AAATATATAT
1925741 TTTTAAATTATT-TTTCTAAA
1 TTTTAAA-TATTATTTCTAAA
*
1925761 TTTTAAATATTATTTTTAAA
1 TTTTAAATATTATTTCTAAA
1925781 TT
1 TT
1925783 ATTGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAATATTATTTCTAAA
Found at i:1925790 original size:12 final size:11
Alignment explanation
Indices: 1925738--1925792 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
1925728 TTTAAATATA
1925738 TATTTTTAAAT
1 TATTTTTAAAT
*
1925749 TATTTTTCTAA-
1 TATTTTT-AAAT
*
1925760 -ATTTTAAATAT
1 TATTTTTAA-AT
1925771 TATTTTTAAAT
1 TATTTTTAAAT
1925782 TATTGTTTAAA
1 TATT-TTTAAA
1925793 AATTTAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
9 1 0.03
10 6 0.17
11 13 0.37
12 15 0.43
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAT
Found at i:1925841 original size:20 final size:20
Alignment explanation
Indices: 1925804--1925841 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1925794 ATTTAAATAT
*
1925804 TATTTTCTAATTATTAAACA
1 TATTTTCTAATAATTAAACA
1925824 TATTTT-TAATAATATAAA
1 TATTTTCTAATAAT-TAAA
1925842 ACATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTTTCTAATAATTAAACA
Found at i:1926022 original size:21 final size:21
Alignment explanation
Indices: 1925998--1926038 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
1925988 GAAATTTATT
1925998 ATTT-ATTTTATAATATTTTAA
1 ATTTAATTTTA-AATATTTTAA
1926019 ATTTAAATTTTAAATATTTT
1 ATTT-AATTTTAAATATTTT
1926039 TTAAATCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 8 0.44
23 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTTAATTTTAAATATTTTAA
Found at i:1926061 original size:31 final size:32
Alignment explanation
Indices: 1926001--1926061 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
1925991 ATTTATTATT
* *
1926001 TATTTTATAATATTTTAAATTTAAATTTTAAA
1 TATTTTATAATATCTTAAATATAAATTTTAAA
* *
1926033 TATTTTTTAA-ATCTTAAATATAATTTTTA
1 TATTTTATAATATCTTAAATATAAATTTTA
1926062 TAAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 16 0.64
32 9 0.36
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (32 bp):
TATTTTATAATATCTTAAATATAAATTTTAAA
Found at i:1926089 original size:116 final size:113
Alignment explanation
Indices: 1925852--1926096 Score: 275
Period size: 116 Copynumber: 2.1 Consensus size: 113
1925842 ACATTTAAAT
*
1925852 ATTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAT
1 ATTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTAAATTTTAAT
* * * *
1925917 TTGTTTTATAATTTTTTTAATTATGATTTTTAAATTATTTAAAATATATTA
66 TTGTTTTATAA--TTCTTAAATATAATTTTTAAATTA-TTAAAATAAATTA
* * *
1925968 TTTTTAAAGATATGACCTTTGAAATTTATTATTTA-TTTTATAATATTTTAAATTTAAATTTTAA
1 ATTTTAAAGATATGACCTTTCAAATTTATTA-TTAGTTTTATAATATTTTAAATGTAAATTTT-A
*
1926032 ATATT-TTTTA-AA-TCTTAAATATAATTTTTATAAATTA-TAAACTTTAAAATTA
64 AT-TTGTTTTATAATTCTTAAATATAA-TTTT-TAAATTATTAAA--AT-AAATTA
1926084 ATTTTAAAGATAT
1 ATTTTAAAGATAT
1926097 TCAAACGTTT
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
113 13 0.12
114 4 0.04
115 8 0.07
116 73 0.66
117 11 0.10
118 2 0.02
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (113 bp):
ATTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTAAATTTTAAT
TTGTTTTATAATTCTTAAATATAATTTTTAAATTATTAAAATAAATTA
Found at i:1926225 original size:7 final size:7
Alignment explanation
Indices: 1926208--1926237 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
1926198 TTTTTTAATA
1926208 TAATAATT
1 TAAT-ATT
1926216 TAATATT
1 TAATATT
1926223 TAATATT
1 TAATATT
1926230 TAATATT
1 TAATATT
1926237 T
1 T
1926238 TATTTTGGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TAATATT
Found at i:1929518 original size:30 final size:30
Alignment explanation
Indices: 1929483--1929559 Score: 109
Period size: 30 Copynumber: 2.6 Consensus size: 30
1929473 CGGTGGTTGC
* *
1929483 TCTGGGTGAAATGAACTCGAACTGCCTATG
1 TCTGGGTGATATGAACTCGAACCGCCTATG
*
1929513 TCTGGGTGATATGAACTTGAACCGCCTATG
1 TCTGGGTGATATGAACTCGAACCGCCTATG
**
1929543 TCCAGGTGATATGAACT
1 TCTGGGTGATATGAACT
1929560 ACTCTGAGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (30 bp):
TCTGGGTGATATGAACTCGAACCGCCTATG
Found at i:1931845 original size:70 final size:72
Alignment explanation
Indices: 1931754--1931894 Score: 196
Period size: 70 Copynumber: 2.0 Consensus size: 72
1931744 TTAAAACATA
* * * * * *
1931754 TTTTAAAAAATATATTGAATATATTATAATTTTAATATTAGTTATACTTAACA-TTTTTAATATA
1 TTTTAAAAAATACATTAAATATATTAAAATTTTAAAATTAGCTATACATAACATTTTTTAATATA
*
1931818 TTTAATC
66 GTTAATC
*
1931825 TTTT-AAAAATACATTAAATATATTAAAATTTTAAAATTCGCTATACATAACATTTTTTAATATA
1 TTTTAAAAAATACATTAAATATATTAAAATTTTAAAATTAGCTATACATAACATTTTTTAATATA
1931889 GTTAAT
66 GTTAAT
1931895 ATCTTTAAGT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
70 41 0.67
71 20 0.33
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.48
Consensus pattern (72 bp):
TTTTAAAAAATACATTAAATATATTAAAATTTTAAAATTAGCTATACATAACATTTTTTAATATA
GTTAATC
Found at i:1931997 original size:40 final size:40
Alignment explanation
Indices: 1931968--1932048 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
1931958 CTATATATTA
* *
1931968 AATACATAAATTTATGAATGTATACTAAAATTAAAAAATT
1 AATACATAAATTTATAAATGTATACTAAAACTAAAAAATT
* * * *
1932008 AATATATAAATTTATAAATGTGTACTAAAATTTAAAAATT
1 AATACATAAATTTATAAATGTATACTAAAACTAAAAAATT
1932048 A
1 A
1932049 TAATCAACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (40 bp):
AATACATAAATTTATAAATGTATACTAAAACTAAAAAATT
Found at i:1931998 original size:20 final size:20
Alignment explanation
Indices: 1931975--1932050 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
1931965 TTAAATACAT
*
1931975 AAATTTATGAATGTATACTA
1 AAATTTATAAATGTATACTA
* *
1931995 AAATTAAAAAAT-TAATA-TA
1 AAATTTATAAATGT-ATACTA
*
1932014 TAAATTTATAAATGTGTACTA
1 -AAATTTATAAATGTATACTA
*
1932035 AAATTTAAAAAT-TATA
1 AAATTTATAAATGTATA
1932051 ATCAACACAT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
19 6 0.14
20 35 0.80
21 3 0.07
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (20 bp):
AAATTTATAAATGTATACTA
Found at i:1932562 original size:19 final size:20
Alignment explanation
Indices: 1932527--1932570 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
1932517 ATATATTTTT
1932527 AAATAAATTCATTTTTTAAC
1 AAATAAATTCATTTTTTAAC
*
1932547 AAATAAA-TCTTTTTTTAAC
1 AAATAAATTCATTTTTTAAC
1932566 AAATA
1 AAATA
1932571 TTTTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATAAATTCATTTTTTAAC
Found at i:1932890 original size:29 final size:30
Alignment explanation
Indices: 1932869--1932931 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
1932859 AAAAATCATA
*
1932869 ATTTAAAATATTATAAAACAAATTAAATAAT
1 ATTTAAAATATTAAAAAACAAA-TAAATAAT
*
1932900 ATTTAAAATATTAAAAAACTAAT-AATAA-
1 ATTTAAAATATTAAAAAACAAATAAATAAT
1932928 ATTT
1 ATTT
1932932 GAAAGATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 4 0.13
29 5 0.17
30 1 0.03
31 20 0.67
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (30 bp):
ATTTAAAATATTAAAAAACAAATAAATAAT
Found at i:1932996 original size:21 final size:21
Alignment explanation
Indices: 1932972--1933033 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
1932962 TTTTATATTA
**
1932972 TTAAAAATATATATTTAATGT
1 TTAAAAATATATATTTAAAAT
*
1932993 TTAAAAA-ATAATATTCAAAAT
1 TTAAAAATAT-ATATTTAAAAT
*
1933014 TTTAAAATATA-ATTTAAAAT
1 TTAAAAATATATATTTAAAAT
1933034 AATATTTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 10 0.29
21 22 0.65
22 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
TTAAAAATATATATTTAAAAT
Found at i:1933017 original size:22 final size:20
Alignment explanation
Indices: 1932992--1933033 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1932982 ATATTTAATG
1932992 TTTAAAAAATAATATTCAAAAT
1 TTTAAAAAATAAT-TT-AAAAT
*
1933014 TTTAAAATATAATTTAAAAT
1 TTTAAAAAATAATTTAAAAT
1933034 AATATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTAAAAAATAATTTAAAAT
Found at i:1933032 original size:20 final size:21
Alignment explanation
Indices: 1932975--1933033 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 21
1932965 TATATTATTA
1932975 AAAATATATATTT--AATGTTT
1 AAAATATA-ATTTAAAATGTTT
*
1932995 AAAAAATAATATTCAAAAT-TTT
1 AAAATATAAT-TT-AAAATGTTT
1933017 AAAATATAATTTAAAAT
1 AAAATATAATTTAAAAT
1933034 AATATTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 2 0.06
20 14 0.42
21 2 0.06
22 12 0.36
23 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAATATAATTTAAAATGTTT
Found at i:1933102 original size:23 final size:23
Alignment explanation
Indices: 1933026--1933102 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
1933016 TAAAATATAA
*
1933026 TTTAAAATA-ATATTTAAAATTT
1 TTTAAAATATATATTTTAAATTT
* ***
1933048 TTTAAAAATATATATTATAAAACA
1 TTT-AAAATATATATTTTAAATTT
* *
1933072 TTTCAAATATAAATTTTAAATTT
1 TTTAAAATATATATTTTAAATTT
1933095 TTTAAAAT
1 TTTAAAAT
1933103 TAATAACAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 3
0.73 0.21 0.05
Matches are distributed among these distances:
22 3 0.07
23 27 0.66
24 11 0.27
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTAAAATATATATTTTAAATTT
Found at i:1933228 original size:42 final size:41
Alignment explanation
Indices: 1933154--1933232 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
1933144 AATAAGAAAA
* *
1933154 AATATAAAACTTAAAAAAAGTAAAAAATTTAAAGAAAAAGAC
1 AATAAAAAACTTAAAAAAAGTAAAAAAATTAAA-AAAAAGAC
*
1933196 AATAAAAAATTTAAAAAAA-TAAAAAAAATTAAAAAAA
1 AATAAAAAACTTAAAAAAAGT-AAAAAAATTAAAAAAA
1933233 TTGAAAGATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 5 0.15
42 28 0.85
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.19
Consensus pattern (41 bp):
AATAAAAAACTTAAAAAAAGTAAAAAAATTAAAAAAAAGAC
Found at i:1933232 original size:9 final size:9
Alignment explanation
Indices: 1933150--1933234 Score: 61
Period size: 9 Copynumber: 9.9 Consensus size: 9
1933140 ATAAAATAAG
1933150 AAAAAA-TA
1 AAAAAATTA
* *
1933158 TAAAACTTA
1 AAAAAATTA
*
1933167 AAAAAAGTA
1 AAAAAATTA
*
1933176 AAAAATTTA
1 AAAAAATTA
*
1933185 AAGAAA--A
1 AAAAAATTA
* *
1933192 AGACAA-TA
1 AAAAAATTA
*
1933200 AAAAATTTA
1 AAAAAATTA
*
1933209 AAAAAATAA
1 AAAAAATTA
1933218 AAAAAATTA
1 AAAAAATTA
1933227 AAAAAATT
1 AAAAAATT
1933235 GAAAGATGGT
Statistics
Matches: 56, Mismatches: 18, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
7 4 0.07
8 8 0.14
9 44 0.79
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (9 bp):
AAAAAATTA
Found at i:1933354 original size:19 final size:20
Alignment explanation
Indices: 1933319--1933360 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
1933309 TTTTATTTTT
1933319 AATTTAAAATAATATTT-AA
1 AATTTAAAATAATATTTCAA
*
1933338 AATTTAAAA-AGTAATTTCAA
1 AATTTAAAATAAT-ATTTCAA
1933358 AAT
1 AAT
1933361 ATATATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 2 0.10
19 13 0.65
20 5 0.25
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AATTTAAAATAATATTTCAA
Found at i:1933372 original size:33 final size:31
Alignment explanation
Indices: 1933318--1933380 Score: 108
Period size: 33 Copynumber: 2.0 Consensus size: 31
1933308 TTTTTATTTT
1933318 TAATTTAAAATAATATTTAAAATTTAAAAAG
1 TAATTTAAAATAATATTTAAAATTTAAAAAG
1933349 TAATTTCAAAATATATATTTAAAATTTAAAAA
1 TAATTT-AAAATA-ATATTTAAAATTTAAAAA
1933381 TATATATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 6 0.20
32 6 0.20
33 18 0.60
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (31 bp):
TAATTTAAAATAATATTTAAAATTTAAAAAG
Found at i:1933375 original size:21 final size:22
Alignment explanation
Indices: 1933350--1933392 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
1933340 TTTAAAAAGT
*
1933350 AATTTCAAAATATATAT-TTAA
1 AATTTAAAAATATATATATTAA
1933371 AATTTAAAAATATATATATTAA
1 AATTTAAAAATATATATATTAA
1933393 TAAATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTTAAAAATATATATATTAA
Found at i:1933409 original size:22 final size:22
Alignment explanation
Indices: 1933382--1933428 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
1933372 ATTTAAAAAT
1933382 ATATATATTAATAAATTATTTTAA
1 ATATATA-TAATAAATT-TTTTAA
**
1933406 ATATATATTTTAAATTTTTTAA
1 ATATATATAATAAATTTTTTAA
1933428 A
1 A
1933429 GTTAATAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 7 0.33
23 7 0.33
24 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATATATAATAAATTTTTTAA
Found at i:1933409 original size:24 final size:22
Alignment explanation
Indices: 1933382--1933428 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 22
1933372 ATTTAAAAAT
1933382 ATATATATTAATAAATTATTTTAA
1 ATATATATT-ATAAATT-TTTTAA
*
1933406 ATATATATTTTAAATTTTTTAA
1 ATATATATTATAAATTTTTTAA
1933428 A
1 A
1933429 GTTAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 7 0.32
23 6 0.27
24 9 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATATATTATAAATTTTTTAA
Found at i:1933454 original size:10 final size:9
Alignment explanation
Indices: 1933432--1933466 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
1933422 TTTTAAAGTT
1933432 AATAATAATA
1 AATAA-AATA
1933442 AATAAAATAA
1 AATAAAAT-A
1933452 AATAAAATA
1 AATAAAATA
1933461 AATAAA
1 AATAAA
1933467 GGTAAAAGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 10 0.42
10 14 0.58
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AATAAAATA
Found at i:1935888 original size:20 final size:21
Alignment explanation
Indices: 1935865--1935913 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
1935855 GAAAATATAA
*
1935865 TAATATATTTCAT-AAAACAT
1 TAATATATTACATGAAAACAT
*
1935885 TAATATA-CACATGAAAACAT
1 TAATATATTACATGAAAACAT
1935905 TAA-ATATTA
1 TAATATATTA
1935914 ATCATTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.53, C:0.10, G:0.02, T:0.35
Consensus pattern (21 bp):
TAATATATTACATGAAAACAT
Found at i:1946072 original size:72 final size:73
Alignment explanation
Indices: 1945980--1946114 Score: 263
Period size: 72 Copynumber: 1.9 Consensus size: 73
1945970 TTTTAGCTTC
1945980 ACAATATTAAATCACTCGATTTTGAGTTAGAGAGTTTAAATTATTACTATTTTAGTGAAGGCTTT
1 ACAATATTAAATCACTCGATTTTGAGTTAGAGAGTTTAAATTATTACTATTTTAGTGAAGGCTTT
1946045 AAATTATT
66 AAATTATT
1946053 ACAAT-TTAAATCACTCGATTTTGAGTTAGAGAGTTTAAATTATTACTATTTTAGTGAAGGCT
1 ACAATATTAAATCACTCGATTTTGAGTTAGAGAGTTTAAATTATTACTATTTTAGTGAAGGCT
1946115 GCGCGAGTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
72 57 0.92
73 5 0.08
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (73 bp):
ACAATATTAAATCACTCGATTTTGAGTTAGAGAGTTTAAATTATTACTATTTTAGTGAAGGCTTT
AAATTATT
Found at i:1947171 original size:20 final size:20
Alignment explanation
Indices: 1947146--1947183 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
1947136 AAAAAATTAA
1947146 AAATCCAAAAATTCAAATTC
1 AAATCCAAAAATTCAAATTC
*
1947166 AAATCCATAAATTCAAAT
1 AAATCCAAAAATTCAAAT
1947184 AATATTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATCCAAAAATTCAAATTC
Found at i:1966003 original size:30 final size:31
Alignment explanation
Indices: 1965969--1966041 Score: 94
Period size: 30 Copynumber: 2.3 Consensus size: 31
1965959 CGGGAGGGCG
*
1965969 AACTGCAGGTATTGGAGCAATA-GGTGGCAC
1 AACTGCAGGTAGTGGAGCAATATGGTGGCAC
* *
1965999 AACTGCTGGTAGTGGAGCAATAGTTGGTGGTAC
1 AACTGCAGGTAGTGGAGCAATA--TGGTGGCAC
1966032 AACTGCAGGT
1 AACTGCAGGT
1966042 GGGACCGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 20 0.56
33 16 0.44
ACGTcount: A:0.27, C:0.15, G:0.34, T:0.23
Consensus pattern (31 bp):
AACTGCAGGTAGTGGAGCAATATGGTGGCAC
Found at i:1967614 original size:14 final size:14
Alignment explanation
Indices: 1967595--1967624 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1967585 TAAGCATAAG
*
1967595 TATTTTAATCGAAA
1 TATTTTAATAGAAA
1967609 TATTTTAATAGAAA
1 TATTTTAATAGAAA
1967623 TA
1 TA
1967625 ATTATATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (14 bp):
TATTTTAATAGAAA
Found at i:1970392 original size:29 final size:29
Alignment explanation
Indices: 1970334--1970394 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
1970324 TTTTGGGGAA
** * *
1970334 TTTCGGGTTTTAGCCAAAGTGTTTTATTC
1 TTTCGGGACTTAGCCAAAGAGCTTTATTC
*
1970363 TTTCGGGACTTAGCCAAAGAGCTTTGTTC
1 TTTCGGGACTTAGCCAAAGAGCTTTATTC
1970392 TTT
1 TTT
1970395 TGGGGTATAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.44
Consensus pattern (29 bp):
TTTCGGGACTTAGCCAAAGAGCTTTATTC
Found at i:1980978 original size:39 final size:39
Alignment explanation
Indices: 1980935--1981010 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
1980925 GGGGTTTCAA
* * *
1980935 TTTAGCACTTATGTGCTTTAGTTAGCCTTCGGGCTTCCG
1 TTTAGCACTTATGTGCTTCAGCTAGACTTCGGGCTTCCG
1980974 TTTAGCACTTATGTGCTTCAGCTAGACTTCGGGCTTC
1 TTTAGCACTTATGTGCTTCAGCTAGACTTCGGGCTTC
1981011 AGATCACGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.39
Consensus pattern (39 bp):
TTTAGCACTTATGTGCTTCAGCTAGACTTCGGGCTTCCG
Found at i:1982755 original size:19 final size:19
Alignment explanation
Indices: 1982718--1982756 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1982708 TATATCCATA
*
1982718 TTAAATTATAATTATTATT
1 TTAAATTATAACTATTATT
1982737 TTAAATTAATAACTA-TATT
1 TTAAATT-ATAACTATTATT
1982756 T
1 T
1982757 AGTTCTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAAATTATAACTATTATT
Found at i:1984745 original size:22 final size:21
Alignment explanation
Indices: 1984703--1984745 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
1984693 TTTTATTAAA
*
1984703 TTTATTCCATGTACATTTGTT
1 TTTATTCCATGTACATATGTT
**
1984724 TTTATTCTCATGTTTATATGTT
1 TTTATTC-CATGTACATATGTT
1984746 CATTAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.19, C:0.12, G:0.09, T:0.60
Consensus pattern (21 bp):
TTTATTCCATGTACATATGTT
Found at i:1991905 original size:15 final size:15
Alignment explanation
Indices: 1991873--1991906 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1991863 TCCTTTTTCC
**
1991873 TTTTCTTTATTTTGT
1 TTTTCTTTATTTACT
1991888 TTTTCTTTATTTACT
1 TTTTCTTTATTTACT
1991903 TTTT
1 TTTT
1991907 TAAATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTCTTTATTTACT
Found at i:1992011 original size:20 final size:20
Alignment explanation
Indices: 1991986--1992052 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
1991976 TTTCTAATAT
1991986 TATTTTTAAAAATTTAAACA
1 TATTTTTAAAAATTTAAACA
1992006 TATTTTTAAAAATTTAAACA
1 TATTTTTAAAAATTTAAACA
*
1992026 TATTTTTAAAAATTTAAATA
1 TATTTTTAAAAATTTAAACA
1992046 TATTTTT
1 TATTTTT
1992053 TTAAAATTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTTTTAAAAATTTAAACA
Found at i:1992053 original size:21 final size:21
Alignment explanation
Indices: 1991966--1992162 Score: 113
Period size: 20 Copynumber: 9.4 Consensus size: 21
1991956 TTTTATAATA
*
1991966 TTTTAAATAATTTCTAATAT-TAT
1 TTTTAAA-AATTT-AAATATAT-T
*
1991989 TTTTAAAAATTTAAACATA-T
1 TTTTAAAAATTTAAATATATT
*
1992009 TTTTAAAAATTTAAACATA-T
1 TTTTAAAAATTTAAATATATT
1992029 TTTTAAAAATTTAAATATATT
1 TTTTAAAAATTTAAATATATT
* *
1992050 TTTTTAAAA-TT--ATATGATC
1 TTTTAAAAATTTAAATAT-ATT
* *
1992069 TTTT--AAATTTATTATTTATT
1 TTTTAAAAATTTA-AATATATT
* * * * *
1992089 TTATAATATTTTAAATGTATA
1 TTTTAAAAATTTAAATATATT
* **
1992110 CTTTAACATTTTTAAATATTATT
1 TTTTAA-AAATTTAAATA-TATT
* *
1992133 TTTTAAAATTTTAAATATAATC
1 TTTTAAAAATTTAAATAT-ATT
1992155 TTTTAAAA
1 TTTTAAAA
1992163 TTATTATTTT
Statistics
Matches: 140, Mismatches: 22, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
17 3 0.02
18 6 0.04
19 6 0.04
20 46 0.33
21 26 0.19
22 38 0.27
23 15 0.11
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (21 bp):
TTTTAAAAATTTAAATATATT
Found at i:1992144 original size:22 final size:22
Alignment explanation
Indices: 1992084--1992164 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 22
1992074 AATTTATTAT
* *
1992084 TTATTTTATAATATTTTAAAT-
1 TTATTTTTTAAAATTTTAAATA
* ** *
1992105 GTATACTTTAACATTTTTAAATA
1 TTATTTTTTAA-AATTTTAAATA
1992128 TTATTTTTTAAAATTTTAAATA
1 TTATTTTTTAAAATTTTAAATA
* *
1992150 TAATCTTTTAAAATT
1 TTATTTTTTAAAATT
1992165 ATTATTTTTA
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
21 7 0.15
22 31 0.67
23 8 0.17
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.56
Consensus pattern (22 bp):
TTATTTTTTAAAATTTTAAATA
Found at i:1992195 original size:10 final size:11
Alignment explanation
Indices: 1992165--1992218 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
1992155 TTTTAAAATT
*
1992165 ATTATTTTTAA
1 ATTATATTTAA
*
1992176 ATTATTTTTAA
1 ATTATATTTAA
1992187 A-TATATTTAA
1 ATTATATTTAA
*
1992197 ATTCT-TTTAA
1 ATTATATTTAA
1992207 ATTATATTTAA
1 ATTATATTTAA
1992218 A
1 A
1992219 ATTTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 18 0.47
11 20 0.53
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTATATTTAA
Found at i:1992204 original size:21 final size:21
Alignment explanation
Indices: 1992165--1992228 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
1992155 TTTTAAAATT
*
1992165 ATTATTTTTAAATTATTTTTAA
1 ATTATATTTAAATT-TTTTTAA
*
1992187 A-TATATTTAAATTCTTTTAA
1 ATTATATTTAAATTTTTTTAA
*
1992207 ATTATATTTAAAATTTTTTAA
1 ATTATATTTAAATTTTTTTAA
1992228 A
1 A
1992229 AAATATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
20 7 0.19
21 29 0.78
22 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (21 bp):
ATTATATTTAAATTTTTTTAA
Found at i:1992205 original size:104 final size:102
Alignment explanation
Indices: 1992028--1992224 Score: 242
Period size: 104 Copynumber: 1.9 Consensus size: 102
1992018 TTTAAACATA
* *
1992028 TTTTTAAAAATTTAAATATATTTTTTTAAAATTATATGATCTTTTAAATTTATTATTTATTTTAT
1 TTTTTAAAAATTTAAATATAATCTTTTAAAATTATATGATCTTTTAAATTTATTATTTATTTTAT
*
1992093 AATATTTTAAATGTATACTTTAACATTTTTAAATATTAT
66 AATATTTTAAAT-TATA-TTTAAAATTTTTAAATATTAT
* *
1992132 TTTTTAAAATTTTAAATATAATCTTTTAAAATTAT-T-AT-TTTTAAA-TTATTTTTAAATATAT
1 TTTTTAAAAATTTAAATATAATCTTTTAAAATTATATGATCTTTTAAATTTATTATT---TAT-T
*
1992193 TTA-AATTCTTTTAAATTATATTTAAAATTTTT
62 TTATAA-TATTTTAAATTATATTTAAAATTTTT
1992225 TAAAAAATAT
Statistics
Matches: 82, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
100 7 0.09
101 7 0.09
102 13 0.16
103 10 0.12
104 45 0.55
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (102 bp):
TTTTTAAAAATTTAAATATAATCTTTTAAAATTATATGATCTTTTAAATTTATTATTTATTTTAT
AATATTTTAAATTATATTTAAAATTTTTAAATATTAT
Found at i:1992227 original size:31 final size:31
Alignment explanation
Indices: 1992170--1992228 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
1992160 AAATTATTAT
*
1992170 TTTTAAATTATTTTTAAATATATTTAAATTC
1 TTTTAAATTATTTTAAAATATATTTAAATTC
*
1992201 TTTTAAATTATATTTAAAAT-TTTTTAAA
1 TTTTAAATTAT-TTTAAAATATATTTAAA
1992229 AAATATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (31 bp):
TTTTAAATTATTTTAAAATATATTTAAATTC
Found at i:1992229 original size:10 final size:10
Alignment explanation
Indices: 1992165--1992228 Score: 60
Period size: 10 Copynumber: 6.1 Consensus size: 10
1992155 TTTTAAAATT
1992165 ATTATTTTTAA
1 ATTA-TTTTAA
1992176 ATTATTTTTAA
1 ATTA-TTTTAA
1992187 A-TATATTTAA
1 ATTAT-TTTAA
*
1992197 ATTCTTTTAA
1 ATTATTTTAA
1992207 ATTATATTTAAA
1 ATTAT-TTT-AA
1992219 ATT-TTTTAA
1 ATTATTTTAA
1992228 A
1 A
1992229 AAATATTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
9 4 0.09
10 20 0.43
11 18 0.38
12 5 0.11
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTATTTTAA
Found at i:1992234 original size:21 final size:21
Alignment explanation
Indices: 1992171--1992236 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
1992161 AATTATTATT
*
1992171 TTTAAATTATTTTTAAATATA
1 TTTAAATTATTTTAAAATATA
* *
1992192 TTTAAATTCTTTTAAATTATA
1 TTTAAATTATTTTAAAATATA
*
1992213 TTTAAAATT-TTTTAAAAAATA
1 TTT-AAATTATTTTAAAATATA
1992234 TTT
1 TTT
1992237 TATTTGGTAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 34 0.87
22 5 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTAAATTATTTTAAAATATA
Found at i:1998832 original size:38 final size:38
Alignment explanation
Indices: 1998764--1998841 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 38
1998754 TTTAAGTAAA
* * * *
1998764 AAATTAATGAATAATAAAAAATAAATAATTTATATAAC
1 AAATTAAAGAATAAAAAAAAAGAAATAATTTATAAAAC
* *
1998802 AAATTAAAGAGTAAAAAAAAAGATAA-AATTTCTAAAAC
1 AAATTAAAGAATAAAAAAAAAGA-AATAATTTATAAAAC
1998840 AA
1 AA
1998842 CATTTTATGT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
38 31 0.94
39 2 0.06
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (38 bp):
AAATTAAAGAATAAAAAAAAAGAAATAATTTATAAAAC
Found at i:2002688 original size:93 final size:93
Alignment explanation
Indices: 2002575--2002746 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
2002565 CGCCCATAAG
* *
2002575 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
2002640 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
2002668 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
2002733 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
2002747 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:2002743 original size:46 final size:46
Alignment explanation
Indices: 2002568--2002743 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
2002558 TGTAACCCGC
* * *
2002568 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
2002614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
2002664 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
2002707 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
2002744 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:2010246 original size:93 final size:93
Alignment explanation
Indices: 2010133--2010304 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
2010123 CGCCCATAAG
* *
2010133 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
2010198 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
2010226 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
2010291 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
2010305 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:2010301 original size:46 final size:46
Alignment explanation
Indices: 2010126--2010301 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
2010116 TGTAACCCGC
* * *
2010126 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
2010172 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
2010222 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
2010265 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
2010302 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:2017745 original size:47 final size:49
Alignment explanation
Indices: 2017627--2017803 Score: 189
Period size: 44 Copynumber: 3.8 Consensus size: 49
2017617 TGTAACCCGC
* * *
2017627 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--G-CGTT-GCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
2017671 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
2017721 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
2017764 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
2017804 TCAACCATCC
Statistics
Matches: 111, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 34 0.31
45 3 0.03
46 29 0.26
47 30 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:2017791 original size:93 final size:91
Alignment explanation
Indices: 2017634--2017803 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 91
2017624 CGCCCATAAG
*
2017634 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTGCATCCATAAGTGAACTCGGACTCAACTCAAC
2017699 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
*
2017725 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATT-GCATCCATAAGTGAACTCGGACTCAACTCA
2017790 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
2017804 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 28 0.37
92 3 0.04
93 44 0.59
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:2041030 original size:93 final size:93
Alignment explanation
Indices: 2040917--2041088 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
2040907 CGCCCATAAG
* * *
2040917 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
2040982 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
2041010 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
2041075 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
2041089 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:2041085 original size:46 final size:46
Alignment explanation
Indices: 2040910--2041085 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
2040900 TGTAACCCGC
* * *
2040910 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
2040956 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
2041006 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
2041049 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
2041086 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:2041634 original size:5 final size:5
Alignment explanation
Indices: 2041624--2041663 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
2041614 TGATTATGTT
2041624 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA TTATA T
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA T
2041664 ATACATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 23 0.72
6 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:2041666 original size:19 final size:19
Alignment explanation
Indices: 2041625--2041665 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
2041615 GATTATGTTT
2041625 TATATTATATTATTATTAA
1 TATATTATATTATTATTAA
2041644 TATATTATATTA-TATT-A
1 TATATTATATTATTATTAA
2041661 TATAT
1 TATAT
2041666 ACATAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 6 0.27
18 4 0.18
19 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATATTATATTATTATTAA
Found at i:2041694 original size:14 final size:14
Alignment explanation
Indices: 2041670--2041715 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
2041660 ATATATACAT
*
2041670 AAAACAAAAGAAAG
1 AAAAGAAAAGAAAG
*
2041684 AATAGAAAAGAAAG
1 AAAAGAAAAGAAAG
2041698 AAAAGAAACAGAATAG
1 AAAAGAAA-AGAA-AG
2041714 AA
1 AA
2041716 GAGACGAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 19 0.70
15 4 0.15
16 4 0.15
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.04
Consensus pattern (14 bp):
AAAAGAAAAGAAAG
Found at i:2041735 original size:25 final size:25
Alignment explanation
Indices: 2041678--2041735 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
2041668 ATAAAACAAA
2041678 AGAAAGAATAGAAAAGAAAGAAAAG
1 AGAAAGAATAGAAAAGAAAGAAAAG
* *
2041703 A-AACAGAATAGAAGAG-ACGAAACAG
1 AGAA-AGAATAGAAAAGAAAGAAA-AG
2041728 AGAAAGAA
1 AGAAAGAA
2041736 ACAGAGAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
24 7 0.25
25 19 0.68
26 2 0.07
ACGTcount: A:0.67, C:0.05, G:0.24, T:0.03
Consensus pattern (25 bp):
AGAAAGAATAGAAAAGAAAGAAAAG
Found at i:2041772 original size:4 final size:4
Alignment explanation
Indices: 2041765--2041803 Score: 71
Period size: 4 Copynumber: 10.0 Consensus size: 4
2041755 GAGAAGGAAG
2041765 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -AAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
2041804 AAGGGAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 31 0.91
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:2042334 original size:29 final size:30
Alignment explanation
Indices: 2042281--2042337 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
2042271 TCCGAGCCTT
*
2042281 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
*
2042311 GGGGCAAAATTGTAATT-TGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
2042338 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:2042763 original size:44 final size:45
Alignment explanation
Indices: 2042668--2042801 Score: 162
Period size: 46 Copynumber: 3.0 Consensus size: 45
2042658 ACAGGACAGA
* *
2042668 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
2042714 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
2042758 ACAGGAATAATTCATGTAAGTCCATGTCAAAGATATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
2042802 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 36 0.48
45 1 0.01
46 38 0.51
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:2045279 original size:28 final size:28
Alignment explanation
Indices: 2045225--2045324 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
2045215 TATTACAAAG
*
2045225 ATAGTCTTGACGGAC-TCCACATATAAA
1 ATAGTCTTGACGAACTTCCACATATAAA
* *
2045252 ATAGTCTTGATGAACTTTCACATATAAA
1 ATAGTCTTGACGAACTTCCACATATAAA
* * *
2045280 ATAGTCTTGACAAACTTCCACATGTAAG
1 ATAGTCTTGACGAACTTCCACATATAAA
* *
2045308 ATAGTCCTGACAAACTT
1 ATAGTCTTGACGAACTT
2045325 ATCAATTAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
27 13 0.21
28 50 0.79
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (28 bp):
ATAGTCTTGACGAACTTCCACATATAAA
Found at i:2047304 original size:16 final size:16
Alignment explanation
Indices: 2047257--2047306 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
2047247 GAAACTTTTA
*
2047257 TTTTAATATTTTTAGTGT
1 TTTTAAT-TTTTTA-TAT
* *
2047275 TTTTAATGTATTATAT
1 TTTTAATTTTTTATAT
2047291 TTTTAATTTTTTATAT
1 TTTTAATTTTTTATAT
2047307 AAAAAATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 16 0.59
17 4 0.15
18 7 0.26
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTAATTTTTTATAT
Found at i:2047770 original size:31 final size:29
Alignment explanation
Indices: 2047735--2047803 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
2047725 ATTAATAAAA
*
2047735 ATAAAATTGTACTTTAACTCTTCTT-AAAATT
1 ATAAAATT-TAATTTAA-T-TTCTTAAAAATT
*
2047766 ATAAAAATTTAATTTAATTTTTTAAAAATT
1 AT-AAAATTTAATTTAATTTCTTAAAAATT
2047796 ATAAAATT
1 ATAAAATT
2047804 ATAAACTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 10 0.29
30 9 0.26
31 9 0.26
32 6 0.18
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.46
Consensus pattern (29 bp):
ATAAAATTTAATTTAATTTCTTAAAAATT
Found at i:2052417 original size:17 final size:17
Alignment explanation
Indices: 2052397--2052430 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2052387 AAATCCGAAT
2052397 ATTTATTAAAAAAATAA
1 ATTTATTAAAAAAATAA
* *
2052414 ATTTATTTAAAATATAA
1 ATTTATTAAAAAAATAA
2052431 CTCAATTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTTATTAAAAAAATAA
Found at i:2057210 original size:15 final size:15
Alignment explanation
Indices: 2057168--2057211 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
2057158 TGAAAATTTA
2057168 AAATAATTATAAAAAT
1 AAATAA-TATAAAAAT
*
2057184 -AATGATATTAAAAAT
1 AAATAATA-TAAAAAT
2057199 AAATAATATAAAA
1 AAATAATATAAAA
2057212 TATGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 2 0.08
15 16 0.67
16 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (15 bp):
AAATAATATAAAAAT
Found at i:2066227 original size:20 final size:19
Alignment explanation
Indices: 2066204--2066274 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 19
2066194 TTTTTTACTT
2066204 TTTTTTATTTTTTTTTTAAG
1 TTTTTT-TTTTTTTTTTAAG
* *
2066224 TTTTGTCTTTTTCTTTT-A-
1 TTTT-TTTTTTTTTTTTAAG
*
2066242 TTCTTTTTCTTTTTTTTAAG
1 TT-TTTTTTTTTTTTTTAAG
2066262 TTTTCTTTTTTTT
1 TTTT-TTTTTTTT
2066275 AACTTTTAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
18 11 0.28
19 6 0.15
20 22 0.55
21 1 0.03
ACGTcount: A:0.08, C:0.07, G:0.04, T:0.80
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTAAG
Found at i:2066273 original size:38 final size:35
Alignment explanation
Indices: 2066192--2066273 Score: 101
Period size: 38 Copynumber: 2.3 Consensus size: 35
2066182 GTTGATTTTG
*
2066192 TCTTTTTTACTTTTTTTTATTTTTTTTTTAAGTTT
1 TCTTTTTTTCTTTTTTTTATTTTTTTTTTAAGTTT
* * *
2066227 TGTCTTTTTCTTTTATTCTTTTTCTTTTTTTTAAGTTT
1 TCTTTTTTTCTTTT-TT-TTATT-TTTTTTTTAAGTTT
2066265 TCTTTTTTT
1 TCTTTTTTT
2066274 TAACTTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 11 0.29
36 2 0.05
37 4 0.11
38 21 0.55
ACGTcount: A:0.09, C:0.09, G:0.04, T:0.79
Consensus pattern (35 bp):
TCTTTTTTTCTTTTTTTTATTTTTTTTTTAAGTTT
Found at i:2066289 original size:18 final size:16
Alignment explanation
Indices: 2066246--2066281 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
2066236 CTTTTATTCT
*
2066246 TTTTCTTTTTTTTAAG
1 TTTTCTTTTTTTTAAC
2066262 TTTTCTTTTTTTTAAC
1 TTTTCTTTTTTTTAAC
2066278 TTTT
1 TTTT
2066282 AACTTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.08, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTCTTTTTTTTAAC
Found at i:2066508 original size:52 final size:53
Alignment explanation
Indices: 2066452--2066554 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 53
2066442 CATATCTTTA
* *
2066452 AATA-TTTAAATGTCTTATATTATTAAAAAAT-TATATTTAACA-TTTAAAAAAT
1 AATATTTTAAAT-T-TTAAATTATTAAAAAATATATATTTAAAACTTTAAAAAAT
* **
2066504 AATATTTTAAATTTTAAATTTTTTTAAAATATATATTTAAAACTTTAAAAA
1 AATATTTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTTAAAAA
2066555 GAAGATTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
51 13 0.30
52 15 0.35
53 15 0.35
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.47
Consensus pattern (53 bp):
AATATTTTAAATTTTAAATTATTAAAAAATATATATTTAAAACTTTAAAAAAT
Found at i:2066512 original size:22 final size:20
Alignment explanation
Indices: 2066474--2066517 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
2066464 TCTTATATTA
*
2066474 TTAAAAAATTATATTTAACAT
1 TTAAAAAATAATATTTAA-AT
2066495 TTAAAAAATAATATTTTAAAT
1 TTAAAAAATAATA-TTTAAAT
2066516 TT
1 TT
2066518 TAAATTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAAAATAATATTTAAAT
Found at i:2066662 original size:14 final size:14
Alignment explanation
Indices: 2066645--2066695 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
2066635 ATATTTAATA
*
2066645 TTTAAAAAATAAAT
1 TTTAAAATATAAAT
* *
2066659 TTTAAATTTTAAAT
1 TTTAAAATATAAAT
*
2066673 TTTAAAATATACA-
1 TTTAAAATATAAAT
2066686 TTTAAAATAT
1 TTTAAAATAT
2066696 TATAAAACTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTAAAATATAAAT
Found at i:2066664 original size:7 final size:7
Alignment explanation
Indices: 2066654--2066678 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2066644 ATTTAAAAAA
2066654 TAAATTT
1 TAAATTT
2066661 TAAATTT
1 TAAATTT
2066668 TAAATTT
1 TAAATTT
2066675 TAAA
1 TAAA
2066679 ATATACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TAAATTT
Found at i:2066669 original size:28 final size:28
Alignment explanation
Indices: 2066620--2066693 Score: 71
Period size: 28 Copynumber: 2.6 Consensus size: 28
2066610 AATTAATAAT
*
2066620 AAAAATAAA--TAAAATATATTTAATATTTA
1 AAAAATAAATTTAAAAT-T-TTAAAT-TTTA
*
2066649 AAAAATAAATTTTAAATTTTAAATTTTA
1 AAAAATAAATTTAAAATTTTAAATTTTA
* *
2066677 AAATATACATTTAAAAT
1 AAAAATAAATTTAAAAT
2066694 ATTATAAAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 18 0.47
29 14 0.37
30 1 0.03
31 5 0.13
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (28 bp):
AAAAATAAATTTAAAATTTTAAATTTTA
Found at i:2066910 original size:282 final size:278
Alignment explanation
Indices: 2066403--2066917 Score: 634
Period size: 282 Copynumber: 1.8 Consensus size: 278
2066393 TTATTTATTT
*
2066403 ATTTAAAATATTATAAAATTAATAATAAATTTGAAAAGTCATATCTTTAAATATTTAAATGTCTT
1 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAAGTCATATCTTTAAATATTTAAATGTCTT
* * * **
2066468 ATATTATTAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTTAAATTTTTTTAAAA
66 ATATTAATAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTAAAATATTTCAAAAA
* * * * *
2066533 TATATATTTAAAACTTTAAAAAGAAGATTAAAAAATATATTAACAATATTTCAAATACACATTTC
131 TATATATTTAAAAC-TTAAAAAGAAAAATAAAAAATATA-TAACAAGA-TTCAAAGACACATTTA
* *
2066598 AAGTTTTTTTAAAATTAATAATAAAAATAAATAAAATATATTTAATATTTAAAAAATAAATTTTA
193 AAATTTATTTAAAATTAATAAT-AAAATAAATAAAATATATTTAATATTTAAAAAATAAATTTTA
2066663 AATTTTAAATTTTAAAATATAC
257 AATTTTAAATTTTAAAATATAC
* *
2066685 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAGGTCATATCTTTAAATATTTAAATGTTTT
1 ATTTAAAATATTATAAAACTAATAATAAATTTGAAAAGTCATATCTTTAAATATTTAAATGTCTT
* * * *
2066750 GTATTAATAAAAAATT-TATTTTATATTTAATAAATAATA-TTTAAACTTTAAAAAAATAATTTC
66 ATATTAATAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAA-TTT---AAAAT-ATTTC
*
2066813 AAAAATATATATTTAAAA-TTAAGAATA-AAAAATAAATAAA-ATA-AATAAGGA-T-AAAGACA
126 AAAAATATATATTTAAAACTTAA-AA-AGAAAAATAAA-AAATATATAACAA-GATTCAAAGAC-
2066872 ACATTTAAAATTTAAAATTTAAAATTAATAAT-AAATAAATAAAATA
186 ACATTTAAAATTT---ATTTAAAATTAATAATAAAATAAATAAAATA
2066918 AGGATAAATA
Statistics
Matches: 200, Mismatches: 20, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
280 11 0.05
281 35 0.17
282 94 0.47
283 5 0.03
284 31 0.16
285 24 0.12
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (278 bp):
ATTTAAAATATTATAAAACTAATAATAAATTTGAAAAGTCATATCTTTAAATATTTAAATGTCTT
ATATTAATAAAAAATTATATTTAACATTTAAAAAATAATATTTTAAATTTAAAATATTTCAAAAA
TATATATTTAAAACTTAAAAAGAAAAATAAAAAATATATAACAAGATTCAAAGACACATTTAAAA
TTTATTTAAAATTAATAATAAAATAAATAAAATATATTTAATATTTAAAAAATAAATTTTAAATT
TTAAATTTTAAAATATAC
Found at i:2066974 original size:57 final size:57
Alignment explanation
Indices: 2066814--2066975 Score: 229
Period size: 58 Copynumber: 2.8 Consensus size: 57
2066804 AATAATTTCA
* *
2066814 AAAATATATATTTAAAA-TTAAGAATAAAAAATAAATAAAATAAATAAGGATAAAGAC
1 AAAATATATATTTAAAATTTAA-AATTAATAATAAATAAAATAAATAAGGATAAAGAC
* * * *
2066871 AACATTTAAAATTTAAAATTTAAAATTAATAATAAAT-AAATAAAATAAGGATAAATAC
1 AAAATAT-ATATTTAAAATTTAAAATTAATAATAAATAAAAT-AAATAAGGATAAAGAC
2066929 AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAA
1 AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAA
2066976 ATTTAAAATA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
57 43 0.47
58 45 0.49
59 4 0.04
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.30
Consensus pattern (57 bp):
AAAATATATATTTAAAATTTAAAATTAATAATAAATAAAATAAATAAGGATAAAGAC
Found at i:2067051 original size:38 final size:38
Alignment explanation
Indices: 2067008--2067083 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
2066998 TTTTTATAAT
*
2067008 TAAGAAAAAG-TTAAAAGTTAAAAAAATAAAAC-TTAAAA
1 TAAGAAAAAGAATAAAAG--AAAAAAATAAAACTTTAAAA
*
2067046 TAAGAAAAAGAATAAAAGAAAAAGATAAAACTTTAAAA
1 TAAGAAAAAGAATAAAAGAAAAAAATAAAACTTTAAAA
2067084 AAAAAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 12 0.35
38 16 0.47
39 6 0.18
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.18
Consensus pattern (38 bp):
TAAGAAAAAGAATAAAAGAAAAAAATAAAACTTTAAAA
Done.