Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 73 of 320
Found at i:22697936 original size:48 final size:48
Alignment explanation
Indices: 22697872--22697968 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
22697862 TTTGTTTTAG
22697872 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
1 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
22697920 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
1 TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
22697968 T
1 T
22697969 TTCATGTTAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (48 bp):
TATCAGAGCATAGGTTTAGTCGATTCTAGTTTATAAGCAAGTTTAGCA
Found at i:22702023 original size:21 final size:22
Alignment explanation
Indices: 22701994--22702040 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
22701984 TAGAAGGAGT
*
22701994 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22702016 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
22702037 GAGT
1 GAGT
22702041 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:22705844 original size:19 final size:19
Alignment explanation
Indices: 22705820--22705858 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
22705810 GAAGGAGCTG
22705820 TACAACTACAAAGAGGAAA
1 TACAACTACAAAGAGGAAA
22705839 TACAACTACAAAGAGGAAA
1 TACAACTACAAAGAGGAAA
22705858 T
1 T
22705859 GTCCAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.13
Consensus pattern (19 bp):
TACAACTACAAAGAGGAAA
Found at i:22708907 original size:18 final size:16
Alignment explanation
Indices: 22708876--22708913 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
22708866 TTCTATATAG
22708876 ATTTTACTTTTATTTT
1 ATTTTACTTTTATTTT
22708892 ATTTTACTACTTTATTTT
1 ATTTTACT--TTTATTTT
22708910 ATTT
1 ATTT
22708914 AAATAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
18 12 0.60
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTACTTTTATTTT
Found at i:22713053 original size:18 final size:17
Alignment explanation
Indices: 22713026--22713072 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
22713016 TTAGCATAAA
*
22713026 AATAACAATAATATTCAC
1 AATAAAAATAATATTC-C
* *
22713044 AATAAAAATAATGTTCT
1 AATAAAAATAATATTCC
22713061 AAT-AAAATAATA
1 AATAAAAATAATA
22713073 AAAGAAATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 3 0.12
18 14 0.56
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (17 bp):
AATAAAAATAATATTCC
Found at i:22713271 original size:13 final size:13
Alignment explanation
Indices: 22713253--22713279 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22713243 ATTATGTGAA
22713253 ACAAAATAATGAT
1 ACAAAATAATGAT
22713266 ACAAAATAATGAT
1 ACAAAATAATGAT
22713279 A
1 A
22713280 ATAATAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAAAATAATGAT
Found at i:22713498 original size:3 final size:3
Alignment explanation
Indices: 22713483--22713607 Score: 69
Period size: 3 Copynumber: 42.0 Consensus size: 3
22713473 ACAATAAAGG
* * * *
22713483 ATA ATA GTA ATA ATA ATA ATA ATA ATGA A-A ATA AGA GTA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
* * * * ** * *
22713528 ATA GTA CATTA A-A AT- ACA ATA GTA A-A GTA ATA GGA ATA GTG ATA
1 ATA ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
22713572 ATA ATA ATA ATA ATA ATA ACA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22713608 TTGAAATACA
Statistics
Matches: 87, Mismatches: 28, Indels: 14
0.67 0.22 0.11
Matches are distributed among these distances:
2 6 0.07
3 76 0.87
4 3 0.03
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:22713721 original size:3 final size:3
Alignment explanation
Indices: 22713715--22713743 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
22713705 AATATACACC
22713715 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
22713744 CAACAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:22713865 original size:28 final size:28
Alignment explanation
Indices: 22713821--22713876 Score: 57
Period size: 26 Copynumber: 2.1 Consensus size: 28
22713811 TATAAAAATA
22713821 TATACATATACATATAA-AATAAAAA-A
1 TATACATATACATATAATAATAAAAATA
*
22713847 TATACACTAT-TA-ATAATAATAATAAATA
1 TATACA-TATACATATAATAATAA-AAATA
22713875 TA
1 TA
22713877 ATAATAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
25 4 0.16
26 12 0.48
27 6 0.24
28 3 0.12
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (28 bp):
TATACATATACATATAATAATAAAAATA
Found at i:22713881 original size:143 final size:141
Alignment explanation
Indices: 22713576--22714432 Score: 899
Period size: 143 Copynumber: 6.1 Consensus size: 141
22713566 GTGATAATAA
* * * * * *
22713576 TAATAATAATAATAACAATAATAGTAATAATATTGAAATACAAAAAGCAAATGTAGTATAAT-AA
1 TAATAATAATAATAATAAT-ATAATAATAATA-TCAAA-ACAAAAAGCAAGTATAATATAATAAA
* * * * *
22713640 AA-A-TAAAGT-AATTAA--AAAAATAATAGTATGTATAAATATA-AGTATATATACATATATAA
63 AATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAAATATA-TACATATACATATATAA
22713699 TAAAAAAATATACAC
127 TAAAAAAATATACAC
* * *
22713714 CAATAATAATAATAAT-A-ATAATAATAATAACAACAACAAAAAGCAAGCATAATATAATAAAAA
1 TAATAATAATAATAATAATATAATAATAATATCAA-AACAAAAAGCAAGTATAATATAATAAAAA
*
22713777 TATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAAAATATATACATATACATATAAAAT-
65 TATTAAAATAAAGTAATTA-AAAATAATACTATGTATAAAAATATATACATATACATATATAATA
22713841 AAAAAATATACAC
129 AAAAAATATACAC
* *
22713854 TATTAATAATAATAATAAATATAATAATAATATCAATAACAAAAAGCAAGCATAATATAATAAAA
1 TAATAATAATAATAAT-AATATAATAATAATATCAA-AACAAAAAGCAAGTATAATATAATAAAA
*
22713919 ATATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAAAATATATACATATACACATATAAT
64 ATATTAAAATAAAGTAATTA-AAAATAATACTATGTATAAAAATATATACATATACATATATAAT
22713984 AAAAAAATATACAC
128 AAAAAAATATACAC
*
22713998 TATTAATAATAATAATAATAAATATAATAATAATATTAATAACAAAAAGCGAA-TATAATATAAT
1 ---TAATAATAATAATAAT-AATATAATAATAATATCAA-AACAAAAAGC-AAGTATAATATAAT
* * *
22714062 AAAAATATTAAAATAAAGTAATTAAAAATAATGCTATATATAAAGATATAT--ATATACATATAT
60 AAAAATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAAATATATACATATACATATAT
22714125 AAT--AAAAATATACAC
125 AATAAAAAAATATACAC
*
22714140 TAAT-AT-ATAATAAT-A-ATAATAAT-AT-TGAAATAC-AAAA--AAGTA-AATATAATAAAAA
1 TAATAATAATAATAATAATATAATAATAATATCAAA-ACAAAAAGCAAGTATAATATAATAAAAA
* * * *
22714195 TATTAAAAATAAA-TAATAAAAAATAATACTA--TAT----ATATACACGTATACATATACAAT-
65 TATT-AAAATAAAGTAATTAAAAATAATACTATGTATAAAAATATATACATATACATATATAATA
22714252 -AAAAATATACAC
129 AAAAAATATACAC
*
22714264 TAATATATGATAATAATAATAATAATAATAATAATATTGAAATACAAAAAGC-A-TATAATATAA
1 T-A-ATA--ATAATAATAATAAT-ATAATAATAATA-TCAAA-ACAAAAAGCAAGTATAATATAA
* * * *
22714327 TAAAAATATTAAAATAAGGTAA-T-AAAATAATACTATATATAAATATGTATACATATACATACA
59 TAAAAATATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAAATATATAC--AT--ATACA
22714390 TATATAATAAAAATAATATACAC
120 TATATAATAAAAA-AATATACAC
22714413 TAATAATAATAATAATAATA
1 TAATAATAATAATAATAATA
22714433 ATATGAAAAA
Statistics
Matches: 627, Mismatches: 40, Indels: 98
0.82 0.05 0.13
Matches are distributed among these distances:
122 5 0.01
124 26 0.04
125 1 0.00
126 5 0.01
128 35 0.06
129 12 0.02
130 8 0.01
131 6 0.01
132 5 0.01
133 10 0.02
134 31 0.05
135 17 0.03
136 21 0.03
137 27 0.04
138 45 0.07
139 4 0.01
140 28 0.04
141 38 0.06
142 20 0.03
143 106 0.17
144 29 0.05
145 14 0.02
146 36 0.06
147 82 0.13
148 6 0.01
149 10 0.02
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (141 bp):
TAATAATAATAATAATAATATAATAATAATATCAAAACAAAAAGCAAGTATAATATAATAAAAAT
ATTAAAATAAAGTAATTAAAAATAATACTATGTATAAAAATATATACATATACATATATAATAAA
AAAATATACAC
Found at i:22713993 original size:21 final size:22
Alignment explanation
Indices: 22713969--22714030 Score: 69
Period size: 21 Copynumber: 2.9 Consensus size: 22
22713959 AAATATATAC
22713969 ATATACACATATAATAA-AAAA
1 ATATACACATATAATAATAAAA
*
22713990 ATATACAC-TATTAATAATAATA
1 ATATACACATA-TAATAATAAAA
22714012 ATAATA-A-ATATAATAATAA
1 AT-ATACACATATAATAATAA
22714031 TATTAATAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 2 0.06
21 23 0.64
22 8 0.22
23 3 0.08
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (22 bp):
ATATACACATATAATAATAAAA
Found at i:22714007 original size:3 final size:3
Alignment explanation
Indices: 22714001--22714467 Score: 81
Period size: 3 Copynumber: 151.7 Consensus size: 3
22713991 TATACACTAT
* * *
22714001 TAA TAA TAA TAA TAA TAA -ATA TAA TAA TAA TAT TAA TAA CAA AAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
22714046 GCGAA T-A TAA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TTAA AAA
1 --TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
** *
22714090 TAA TGC T-A TATA TAA -AGA TATA TATA TACA TATA TAA TAA AAA T-A
1 TAA TAA TAA TA-A TAA TA-A TA-A TA-A TA-A TA-A TAA TAA TAA TAA
* * *
22714135 TACA CTAA TATA TAA TAA TAA TAA TAA TAT TGA -AA TACA -AA AAA GTAA
1 TA-A -TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA -TAA
* * * *
22714183 -ATA TAA TAA AAA TAT TAA AAA TAAA TAA TAA -AA -AA TAA TAC TATA
1 TA-A TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TA-A
* * *
22714228 TATA TACA CGT-A TACA TATA CAA TAA AAA T-A TACA CTAA TATA TGA
1 TA-A TA-A --TAA TA-A TA-A TAA TAA TAA TAA TA-A -TAA TA-A TAA
* * **
22714274 TAA TAA TAA TAA TAA TAA TAA TAA TAT TGA -AA TACA -AA -AA GCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
* * *
22714317 T-A TAA T-A TAA TAA AAA TAT TAA -AA TAA GGTAA TAA -AA TAA TAC
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA
* *
22714360 T-A TATA TAA -ATA TGTA TACA T-A TACA TACA TATA TAA TAA AAA TAA
1 TAA TA-A TAA TA-A T-AA TA-A TAA TA-A TA-A TA-A TAA TAA TAA TAA
* *
22714406 T-A TACA CTAA TAA TAA TAA TAA TAA TAA T-A TGAA -AA AAA GAA TAA
1 TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
*
22714451 TAA TAA TAA TAA CAA TA
1 TAA TAA TAA TAA TAA TA
22714468 GTGTTTAGAC
Statistics
Matches: 343, Mismatches: 64, Indels: 114
0.66 0.12 0.22
Matches are distributed among these distances:
2 44 0.13
3 216 0.63
4 71 0.21
5 11 0.03
6 1 0.00
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:22714195 original size:25 final size:25
Alignment explanation
Indices: 22714167--22714223 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
22714157 AATAATATTG
*
22714167 AAATACAAAAAAGTAAAT-ATAATAA
1 AAATACAAAAAA-TAAATAATAAAAA
**
22714192 AAATATTAAAAATAAATAATAAAAA
1 AAATACAAAAAATAAATAATAAAAA
22714217 ATAATAC
1 A-AATAC
22714224 TATATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 5 0.19
25 17 0.65
26 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (25 bp):
AAATACAAAAAATAAATAATAAAAA
Found at i:22714282 original size:62 final size:63
Alignment explanation
Indices: 22714113--22714287 Score: 182
Period size: 62 Copynumber: 2.8 Consensus size: 63
22714103 AAAGATATAT
22714113 ATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATATTGAAATACAAA
1 ATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATATTGAAATACAAA
* * * * * *
22714176 AAAGTA-A-ATATAATAAAAATATTA-A-AAATAAATAATAAAAAATAATACTATAT-ATATAC-
1 ATA-TACATATATAATAAAAATA-TACACTAATATATAAT-AATAATAATAATAT-TGAAATACA
*
22714235 AC
62 AA
* * *
22714237 GTATACATATACAATAAAAATATACACTAATATATGATAATAATAATAATA
1 ATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATA
22714288 ATAATAATAA
Statistics
Matches: 89, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
60 2 0.02
61 14 0.16
62 57 0.64
63 14 0.16
64 2 0.02
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.30
Consensus pattern (63 bp):
ATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATATTGAAATACAAA
Found at i:22714410 original size:22 final size:22
Alignment explanation
Indices: 22714385--22714429 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
22714375 ATACATATAC
22714385 ATACA-TATATAATAAAAATAAT
1 ATACACTA-ATAATAAAAATAAT
*
22714407 ATACACTAATAATAATAATAAT
1 ATACACTAATAATAAAAATAAT
22714429 A
1 A
22714430 ATAATATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (22 bp):
ATACACTAATAATAAAAATAAT
Found at i:22714445 original size:266 final size:267
Alignment explanation
Indices: 22713905--22714459 Score: 690
Period size: 266 Copynumber: 2.0 Consensus size: 267
22713895 AAAAGCAAGC
* *
22713905 ATAATATAATAAAAATATTAAAATAAAGTAATTAGAAAATAATACTATGTATAAAAATATATACA
1 ATAATATAATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTA-GTAT---AATATACACA
* *
22713970 TATACACATATAATAAAAAAATATACACTATTAATAATAATAATAATAAATATAATAATAATATT
62 TATACACATACAAT-AAAAAATATACACTAATAATAATAATAATAATAAATATAATAATAATATT
*
22714035 AATAACAAAAAGCGAATATAATATAATAAAAATATTAAAATAAAGTAATTAAAAATAATGCTATA
126 AATAACAAAAAGC-AATATAATATAATAAAAATATTAAAATAAAGTAATTAAAAATAATACTATA
*
22714100 TATAAAGATATATATATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATAT
190 TATAAAGATATATACATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATAT
*
22714165 TGAAATACAAAAAAGT
255 TG--A-ACAAAAAAGA
*
22714181 A-AATATAATAAAAATATTAAAAATAAA-TAA-TAAAAAATAATACTA-TAT-ATATACACGTAT
1 ATAATATAATAAAAATATT-AAAATAAAGTAATTAAAAAATAATACTAGTATAATATACACATAT
* *
22714241 ACATATACAAT-AAAAATATACACTAATATATGATAATAATAAT-AATAATAATAATAATATTGA
65 ACACATACAATAAAAAATATACACTAATA-ATAATAATAATAATAAAT-ATAATAATAATATT-A
*
22714304 A-ATACAAAAAGC-ATATAATATAATAAAAATATTAAAATAAGGTAA-T-AAAATAATACTATAT
127 ATA-ACAAAAAGCAATATAATATAATAAAAATATTAAAATAAAGTAATTAAAAATAATACTATAT
22714365 ATAAATATGTATACATATACATACATATATAATAAAAATAATATACACTAATA-ATAATAATAAT
191 AT-AA-A-G-AT--ATATACATACATATATAAT--AAA-AATATACACTAATATATAATAATAAT
22714429 AATAATA-TG-A-AAAAAAGA
247 AATAATATTGAACAAAAAAGA
22714447 ATAATAATAATAA
1 ATAAT-ATAATAA
22714460 TAACAATAGT
Statistics
Matches: 252, Mismatches: 11, Indels: 40
0.83 0.04 0.13
Matches are distributed among these distances:
264 16 0.06
265 3 0.01
266 60 0.24
267 33 0.13
268 39 0.15
270 18 0.07
271 2 0.01
272 24 0.10
273 14 0.06
274 14 0.06
275 20 0.08
276 9 0.04
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.30
Consensus pattern (267 bp):
ATAATATAATAAAAATATTAAAATAAAGTAATTAAAAAATAATACTAGTATAATATACACATATA
CACATACAATAAAAAATATACACTAATAATAATAATAATAATAAATATAATAATAATATTAATAA
CAAAAAGCAATATAATATAATAAAAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAA
GATATATACATACATATATAATAAAAATATACACTAATATATAATAATAATAATAATATTGAACA
AAAAAGA
Found at i:22728430 original size:88 final size:88
Alignment explanation
Indices: 22728272--22728541 Score: 314
Period size: 88 Copynumber: 3.1 Consensus size: 88
22728262 GTTATTTTGA
* * *
22728272 TGAAAAACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAGCTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *** *
22728337 CTGATTTTTTTTTTAAAATAAAT
66 TTGATTTTTTTACGAAAAGAAAT
* *
22728360 TGAAGAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* **
22728425 TTGA--TTTTGACGAACGGAAAT
66 TTGATTTTTTTACGAAAAGAAAT
* * *
22728446 TAAAAAACAAAAATTAAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATAT
* *
22728510 GAGTTGATTTTTTTGATGAACAGAAAT
63 GAGTTGATTTTTTT-ACGAAAAGAAAT
22728537 T-AAAA
1 TGAAAA
22728542 CTACTTCAAC
Statistics
Matches: 155, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
86 35 0.23
88 99 0.64
89 2 0.01
90 8 0.05
91 11 0.07
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (88 bp):
TGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTACGAAAAGAAAT
Found at i:22728513 original size:250 final size:249
Alignment explanation
Indices: 22728149--22728703 Score: 674
Period size: 250 Copynumber: 2.2 Consensus size: 249
22728139 GACCCTGGGT
* * * * * *
22728149 TCAACTCACCTCTCGCGATATAAGTTGATTTTTTGAAAAACAGACATAATAAAACAGAATTTGAA
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAACAGAAATAATAAAACAAAAATTAAA
*
22728214 AATAACTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTGATGAAAA
64 AATAACTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATGAAAA
* * *
22728278 ACAGAAATTAAAAATACCTCAGCGTATCCTGAGACTCAGCTCACCTCTCGCAATATGAGCTGATT
129 ACAGAAATTAAAAATACCTCAACGTATCCTAAGACTCAACTCACCTCTCGCAATATGAGCTGA--
* * * * *
22728343 TTTTTTTTAAAATAAATTGAA-GAACAGAAATT-AAAATTACCTCAGC-GTGTCCTGAGGC
192 -TTTTTTGAAAAAAAAAT-AACAAACAGAAATTGAAAA-TACCTCAGCAGTGACCTGAGGC
** *
22728401 TCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACGGAAATTAA-AAAACAAAAATTAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAA-TAATAAAACAAAAATTAAAA
* * ** **
22728465 ATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGAA
65 ATAACTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATGAAAAA
* * * * * *
22728530 CAGAAATTAAAACTACTTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
130 CAGAAATTAAAAATACCTCAACGTATCCTAAGACTCAACTCACCTCTCGCAATATGAGCTGATTT
22728595 TTTGAAAAAAAAATAACAAACAGAAATTGAAAATACCTCAGCATGTGACCTGAGGC
195 TTTGAAAAAAAAATAACAAACAGAAATTGAAAATACCTCAGCA-GTGACCTGAGGC
* * *
22728651 TCAACTCACTTCTCGCAGTATGAGTTGATTTTTGAAAGACAGAAAT--TAAAACA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAGAAATAATAAAACA
22728704 TCCGAGTACC
Statistics
Matches: 259, Mismatches: 36, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
247 2 0.01
248 33 0.13
249 10 0.04
250 110 0.42
251 78 0.30
252 26 0.10
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (249 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATAATAAAACAAAAATTAAAAA
TAACTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGATGAAAAAC
AGAAATTAAAAATACCTCAACGTATCCTAAGACTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTGAAAAAAAAATAACAAACAGAAATTGAAAATACCTCAGCAGTGACCTGAGGC
Found at i:22728679 original size:162 final size:163
Alignment explanation
Indices: 22728359--22728702 Score: 482
Period size: 162 Copynumber: 2.1 Consensus size: 163
22728349 TTAAAATAAA
* * *
22728359 TTGAAGAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
*** *
22728424 GTTGATTTTGACGAACGGAAATTAAAAAACAAAAATTAAAAATACCTCAGCATGTGAGCCGAGGC
66 GTTGATTTTGACGAAAAAAAAATAAAAAACAAAAATTAAAAATACCTCAGCATGTGAGCCGAGGC
22728489 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
131 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
22728522 TTGATGAACAGAAATTAAAACTACTTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
** * * *
22728587 GTTGATTTT-TTGAAAAAAAAATAACAAACAGAAATTGAAAATACCTCAGCATGTGA-CCTGAGG
66 GTTGATTTTGACGAAAAAAAAATAAAAAACAAAAATTAAAAATACCTCAGCATGTGAGCC-GAGG
* *
22728650 CTCAACTCACTTCTCGCAGTATGAGTTGA--TTT
130 CTCAACTCACCTCTCGCAATATGAGTTGATTTTT
22728682 TTGAA-AGACAGAAATTAAAAC
1 TTGAAGA-ACAGAAATTAAAAC
22728703 ATCCGAGTAC
Statistics
Matches: 161, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
159 1 0.01
160 21 0.13
161 2 0.01
162 69 0.43
163 68 0.42
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (163 bp):
TTGAAGAACAGAAATTAAAACTACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTGACGAAAAAAAAATAAAAAACAAAAATTAAAAATACCTCAGCATGTGAGCCGAGGC
TCAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:22736966 original size:22 final size:22
Alignment explanation
Indices: 22736938--22736982 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
22736928 AATGGATGAA
22736938 TGAATAAATGACAAATGAATGT
1 TGAATAAATGACAAATGAATGT
*
22736960 TGAATAAATGACGAATGAATGT
1 TGAATAAATGACAAATGAATGT
22736982 T
1 T
22736983 AGTCATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.04, G:0.20, T:0.29
Consensus pattern (22 bp):
TGAATAAATGACAAATGAATGT
Found at i:22739797 original size:15 final size:16
Alignment explanation
Indices: 22739777--22739811 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
22739767 CGTTTTATTT
*
22739777 AAAAACT-AAACTATA
1 AAAAACTAAAACAATA
22739792 AAAAACTAAAACAATA
1 AAAAACTAAAACAATA
22739808 AAAA
1 AAAA
22739812 CTTAGAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAACTAAAACAATA
Found at i:22740633 original size:18 final size:17
Alignment explanation
Indices: 22740606--22740652 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
22740596 TTAGCATAAA
*
22740606 AATAACAATAATATTCAC
1 AATAAAAATAATATTC-C
* *
22740624 AATAAAAATAATGTTCT
1 AATAAAAATAATATTCC
22740641 AAT-AAAATAATA
1 AATAAAAATAATA
22740653 AAAGAAATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 8 0.32
17 3 0.12
18 14 0.56
ACGTcount: A:0.60, C:0.09, G:0.02, T:0.30
Consensus pattern (17 bp):
AATAAAAATAATATTCC
Found at i:22740851 original size:13 final size:13
Alignment explanation
Indices: 22740833--22740859 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22740823 ATTATGTGAA
22740833 ACAAAATAATGAT
1 ACAAAATAATGAT
22740846 ACAAAATAATGAT
1 ACAAAATAATGAT
22740859 A
1 A
22740860 ATAATAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (13 bp):
ACAAAATAATGAT
Found at i:22741078 original size:3 final size:3
Alignment explanation
Indices: 22741063--22741199 Score: 100
Period size: 3 Copynumber: 46.0 Consensus size: 3
22741053 ACAATAAAGG
* * * * *
22741063 ATA ATA GTA ATA ATA ATA ATA ATA ATA AAA ATA AGA GTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * ** * *
22741111 GTA CATTA A-A AT- ACA ATA GTA A-A GTA ATA GGA ATA GTG ATA ATA
1 ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
22741155 ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA GTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22741200 TTGAAATACA
Statistics
Matches: 99, Mismatches: 30, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
2 4 0.04
3 92 0.93
4 1 0.01
5 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:22741460 original size:143 final size:139
Alignment explanation
Indices: 22741306--22742013 Score: 672
Period size: 143 Copynumber: 5.1 Consensus size: 139
22741296 AATATACACC
*
22741306 AATAATAATAATAATAATAATAACAACAAAAAGCAAGCATAATATAATAAAAATATTAAAATAAA
1 AATAAT-ATAATAATAATAATAA-AACAAAAAGCAAGTATAATATAATAAAAATATTAAAATAAA
*
22741371 GTAATTAGAAAATAATACTATGTATACAAATATATACATATACATATAAAATAAAAAATATACAC
64 GTAATTA-AAAATAATACTATATATA-AAATATATACATATACATATAAAATAAAAAATATACAC
22741436 TATTAATAATAAT
127 TATTAATAATAAT
* *
22741449 AATAAATATAATAATAAT-ATCAATAACAAAAATCAAGCATAATATAATAAAAATATTAAAATAA
1 AAT-AATATAATAATAATAAT-AA-AACAAAAAGCAAGTATAATATAATAAAAATATTAAAATAA
* * *
22741513 AGTAATTAGAAAATAATACTATGTATAAAAATATATACATATACACATATAATAAAAAATATACA
63 AGTAATTA-AAAATAATACTATATAT-AAAATATATACATATACATATAAAATAAAAAATATACA
*
22741578 CTATTATTAATAAT
126 CTATTAATAATAAT
* *
22741592 AATAATAAATATAATAATATTAATAACAAAAAGCGAA-TATAATATAATAAAAATATTAAAATAA
1 AATAATATA-ATAATAATAATAA-AACAAAAAGC-AAGTATAATATAATAAAAATATTAAAATAA
* * *
22741656 AGTAATTAAAAATAATGCTATATATAAAGATATAT--ATACACATATATAAT-AAAAATATACAC
63 AGTAATTAAAAATAATACTATATATAAA-ATATATACATATACATATAAAATAAAAAATATACAC
*
22741718 TAAT-AT-ATAAT
127 TATTAATAATAAT
* * * * * *
22741729 AAT-A-ATAATATTGA-AAT-ACA-AAAAAGTAAATATAATAAAAATATTAAAA-A-T-AAAT-A
1 AATAATATAATAATAATAATAAAACAAAAAGCAAGTATAAT-ATAATA--AAAATATTAAAATAA
* *
22741785 A-TAA---AAAATAATACTATATAT-------ATACGTATACATATACAAT-AAAAATATACACT
63 AGTAATTAAAAATAATACTATATATAAAATATATACATATACATATAAAATAAAAAATATACACT
22741838 AATATATGATAATAAT
128 -AT-TA--ATAATAAT
*
22741854 AATAATAATAATAATAATATTGAAATACAAAAAGC-A-TATAATATAATAAAAATATTAAAATAA
1 AATAAT-ATAATAATAATAAT-AAA-ACAAAAAGCAAGTATAATATAATAAAAATATTAAAATAA
* *
22741917 GGTAA-T--AAATAATACTATATATAAATATGTATACATATACATACATATATAATAAAAATAAT
63 AGTAATTAAAAATAATACTATATATAAA-ATATATACATATACAT--ATA-A-AAT-AAAA-AAT
*
22741979 ATACACTAATAATAATAAT
121 ATACACTATTAATAATAAT
22741998 AATAATAATAATAATA
1 AATAAT-ATAATAATA
22742014 TGAAAAAAAG
Statistics
Matches: 480, Mismatches: 37, Indels: 95
0.78 0.06 0.16
Matches are distributed among these distances:
117 2 0.00
119 25 0.05
120 1 0.00
121 1 0.00
124 2 0.00
125 24 0.05
126 1 0.00
128 15 0.03
129 7 0.01
130 22 0.05
131 18 0.04
132 5 0.01
133 31 0.06
134 5 0.01
135 2 0.00
136 1 0.00
137 8 0.02
138 1 0.00
139 15 0.03
140 13 0.03
141 14 0.03
142 28 0.06
143 189 0.39
144 31 0.06
145 3 0.01
146 2 0.00
147 4 0.01
148 10 0.02
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (139 bp):
AATAATATAATAATAATAATAAAACAAAAAGCAAGTATAATATAATAAAAATATTAAAATAAAGT
AATTAAAAATAATACTATATATAAAATATATACATATACATATAAAATAAAAAATATACACTATT
AATAATAAT
Found at i:22741715 original size:21 final size:22
Alignment explanation
Indices: 22741689--22741735 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
22741679 ATAAAGATAT
22741689 ATATACAC-ATATATAATAAAA
1 ATATACACAATATATAATAAAA
*
22741710 ATATACACTAATATATAATAATA
1 ATATACAC-AATATATAATAAAA
22741733 ATA
1 ATA
22741736 ATATTGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
23 15 0.65
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (22 bp):
ATATACACAATATATAATAAAA
Found at i:22741735 original size:119 final size:117
Alignment explanation
Indices: 22741632--22741855 Score: 297
Period size: 119 Copynumber: 1.8 Consensus size: 117
22741622 AAGCGAATAT
* * *
22741632 AATATAATAAAAATATT-AAAATAAAGTAATTAAAAATAATGCTATATATAAAGATATATATACA
1 AATATAATAAAAATATTAAAAATAAA-TAATAAAAAATAATACTATATAT----ATACATAT--A
* *
22741696 CATATATAATAAAAATATACACTAATATATAATAATAATAATATTGAAATACAAAAAAGTA
59 CATATACAATAAAAATATACACTAATATATAATAATAATAACA-T-AAATACAAAAAAGTA
*
22741757 AATATAATAAAAATATTAAAAATAAATAATAAAAAATAATACTATATATATACGTATACATATAC
1 AATATAATAAAAATATTAAAAATAAATAATAAAAAATAATACTATATATATACATATACATATAC
*
22741822 AATAAAAATATACACTAATATATGATAATAATAA
66 AATAAAAATATACACTAATATATAATAATAATAA
22741856 TAATAATAAT
Statistics
Matches: 92, Mismatches: 6, Indels: 8
0.87 0.06 0.08
Matches are distributed among these distances:
119 40 0.43
121 6 0.07
125 38 0.41
126 8 0.09
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.30
Consensus pattern (117 bp):
AATATAATAAAAATATTAAAAATAAATAATAAAAAATAATACTATATATATACATATACATATAC
AATAAAAATATACACTAATATATAATAATAATAACATAAATACAAAAAAGTA
Found at i:22741770 original size:25 final size:25
Alignment explanation
Indices: 22741742--22741798 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
22741732 AATAATATTG
*
22741742 AAATACAAAAAAGTAAAT-ATAATAA
1 AAATACAAAAAA-TAAATAATAAAAA
**
22741767 AAATATTAAAAATAAATAATAAAAA
1 AAATACAAAAAATAAATAATAAAAA
22741792 ATAATAC
1 A-AATAC
22741799 TATATATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 5 0.19
25 17 0.65
26 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.23
Consensus pattern (25 bp):
AAATACAAAAAATAAATAATAAAAA
Found at i:22741794 original size:125 final size:125
Alignment explanation
Indices: 22741602--22742004 Score: 419
Period size: 125 Copynumber: 3.1 Consensus size: 125
22741592 AATAATAAAT
22741602 ATAATAATATT--AATAACAAAAAGCGAATATAATATAATAAAAATATTAAAATAAAGTAATTAA
1 ATAATAATATTGAAAT-ACAAAAA--G-ATATAATATAATAAAAATATTAAAATAAA-TAA-TAA
* *
22741665 AAATAATGCTATATATAAAG-ATATATATACACATATATAATAAAAATATACACTAATATATAAT
60 AAATAATACTATATATAAAGTATACATATACACATATATAATAAAAATATACACTAATATATAAT
22741729 A
125 A
22741730 ATAATAATATTGAAATACAAAAA-AGTA-AATATAATAAAAATATTAAAAATAAATAATAAAAAA
1 ATAATAATATTGAAATACAAAAAGA-TATAATATAATAAAAATATT-AAAATAAATAAT-AAAAA
* * * * *
22741793 TAATACTATATATATACGTATACATATACA-ATAAAAATATACACTAATATATGATAATAATAAT
63 TAATACTATATATA-AAGTATACATATACACATATATA-ATA-A--AA-ATAT-ACACTAAT-AT
22741857 AATAATA
120 -ATAATA
*
22741864 ATAATAATATTGAAATACAAAAAGCATATAATATAATAAAAATATTAAAATAAGGTAAT--AAAT
1 ATAATAATATTGAAATACAAAAAG-ATATAATATAATAAAAATATTAAAATAA-ATAATAAAAAT
22741927 AATACTATATATAAATATGTATACATATACATACATATATAATAAAAATAATATACACTAATA-A
64 AATACTATATAT-AA-A-GTATACATATAC--ACATATATAAT--AAA-AATATACACTAATATA
22741991 TAATA
121 TAATA
22741996 ATAATAATA
1 ATAATAATA
22742005 ATAATAATAT
Statistics
Matches: 234, Mismatches: 13, Indels: 52
0.78 0.04 0.17
Matches are distributed among these distances:
124 1 0.00
125 39 0.17
126 17 0.07
127 13 0.06
128 12 0.05
129 7 0.03
130 5 0.02
131 4 0.02
132 21 0.09
133 19 0.08
134 31 0.13
135 27 0.12
136 27 0.12
137 4 0.02
138 6 0.03
139 1 0.00
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.31
Consensus pattern (125 bp):
ATAATAATATTGAAATACAAAAAGATATAATATAATAAAAATATTAAAATAAATAATAAAAATAA
TACTATATATAAAGTATACATATACACATATATAATAAAAATATACACTAATATATAATA
Found at i:22741854 original size:3 final size:3
Alignment explanation
Indices: 22741846--22742048 Score: 88
Period size: 3 Copynumber: 67.0 Consensus size: 3
22741836 CTAATATATG
* * **
22741846 ATA ATA ATA ATA ATA ATA ATA ATA ATA TTG A-A ATA CA-A A-A AGC
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * *
22741889 AT- ATA AT- ATA ATA AAA ATA TTA A-A ATA AGGTA ATAA ATA ATA CT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA AT-A ATA ATA ATA
* *
22741933 ATA TATA A-A TATGT ATA CAT- ATA CATA CATA TATA ATA AAA ATA AT-
1 ATA -ATA ATA -AT-A ATA -ATA ATA -ATA -ATA -ATA ATA ATA ATA ATA
* *
22741979 ATA CACTA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATGA A-A AAA AGA
1 ATA -A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
*
22742025 ATA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA
22742049 GTGTTTAGAC
Statistics
Matches: 156, Mismatches: 21, Indels: 46
0.70 0.09 0.21
Matches are distributed among these distances:
2 20 0.13
3 107 0.69
4 24 0.15
5 5 0.03
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:22741939 original size:119 final size:117
Alignment explanation
Indices: 22741697--22742043 Score: 266
Period size: 119 Copynumber: 2.9 Consensus size: 117
22741687 ATATATACAC
* * * *
22741697 ATATATAATAAAAATATACACTAATATATAATAATAATAATATTGA-AATACAAAAAAGTAAATA
1 ATATA-AATAAAAATATACACTAATATATAATAATAATAATAATAATAATA-ATAATAGTAAATA
* * *
22741761 TAATAAAAATATTAAAAATAAATAATAAAAAATAATACTATATATATACGTATA
64 CAATAAAAATATTAAAAATAAATAATAAAAAATAATAATAAATATATACGTATA
* *
22741815 CATATACAATAAAAATATACACTAATATATGATAATAATAATAATAATAATAATAATATTGAAAT
1 -ATATA-AATAAAAATATACACTAATATATAATAATAATAATAATAATAATAATAATAGT-AAAT
* *
22741880 ACAA-AAAGCATA-TAATATAATAAA-AATATTAAAATAAGGTAATAAATA-ATAC-TAT-
63 ACAATAAA-AATATTAA-A-AATAAATAATA-AAAAATAA--TAATAAATATATACGTATA
* * *
22741935 ATATAAATATGTATACATATACA-TACATATATAATAAAAATAAT-ATACACTAATAATAATAAT
1 ATATAAATA---A-AAATATACACTA-ATATATAATAATAATAATAATA-A-TAATAATAATAGT
* * * * *
22741998 -AATAATAATAATAATATGAAAAAAAGAATAAT-AATAATAATAATAA
59 AAAT-ACAATAAAAATATTAAAAATA-AATAATAAAAAATAATAATAA
22742044 CAATAGTGTT
Statistics
Matches: 185, Mismatches: 23, Indels: 40
0.75 0.09 0.16
Matches are distributed among these distances:
118 4 0.02
119 64 0.35
120 19 0.10
121 34 0.18
122 38 0.21
123 26 0.14
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (117 bp):
ATATAAATAAAAATATACACTAATATATAATAATAATAATAATAATAATAATAATAGTAAATACA
ATAAAAATATTAAAAATAAATAATAAAAAATAATAATAAATATATACGTATA
Found at i:22743850 original size:5 final size:5
Alignment explanation
Indices: 22743840--22743864 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
22743830 TACGAATTTG
22743840 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
22743865 GAACACATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:22747274 original size:15 final size:15
Alignment explanation
Indices: 22747254--22747319 Score: 55
Period size: 14 Copynumber: 4.3 Consensus size: 15
22747244 ACTACAAAAC
22747254 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
22747269 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
22747288 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
*
22747303 A-TTAATATTAA-AT
1 ATTTATTATTAATAT
22747316 ATTT
1 ATTT
22747320 TCAATAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 10 0.24
16 1 0.02
17 7 0.17
18 1 0.02
19 9 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:22747369 original size:16 final size:16
Alignment explanation
Indices: 22747338--22747374 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
22747328 ATGTGAATAA
22747338 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
22747354 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
22747370 TATTA
1 TATTA
22747375 AAATAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:22747435 original size:15 final size:16
Alignment explanation
Indices: 22747415--22747447 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
22747405 AAAATAATAA
22747415 ATTAAT-ATTTATTAT
1 ATTAATAATTTATTAT
22747430 ATTAATAATTTATTAT
1 ATTAATAATTTATTAT
22747446 AT
1 AT
22747448 GACTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTAATAATTTATTAT
Found at i:22748004 original size:22 final size:23
Alignment explanation
Indices: 22747976--22748019 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
22747966 TGGATTCAGA
22747976 TTTAAAAAA-ATTCCTTAAATTG
1 TTTAAAAAATATTCCTTAAATTG
*
22747998 TTTAAAAAATTTTCCTTAAATT
1 TTTAAAAAATATTCCTTAAATT
22748020 ATTTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTAAAAAATATTCCTTAAATTG
Found at i:22749173 original size:10 final size:10
Alignment explanation
Indices: 22749145--22749186 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
22749135 TCTTTTTATT
*
22749145 TAAATAATAA
1 TAAATAATTA
*
22749155 AAAATAATTA
1 TAAATAATTA
*
22749165 TAAATAATTC
1 TAAATAATTA
22749175 TAAAT-ATTA
1 TAAATAATTA
22749184 TAA
1 TAA
22749187 TATTTTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 6 0.22
10 21 0.78
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAATAATTA
Found at i:22749197 original size:17 final size:19
Alignment explanation
Indices: 22749156--22749200 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
22749146 AAATAATAAA
22749156 AAATAATTATAAATAATTCT
1 AAAT-ATTATAAATAATTCT
*
22749176 AAATATTAT-AAT-ATTTT
1 AAATATTATAAATAATTCT
22749193 AAATATTA
1 AAATATTA
22749201 ATGAGACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 12 0.50
18 3 0.12
19 5 0.21
20 4 0.17
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATATTATAAATAATTCT
Found at i:22752873 original size:18 final size:19
Alignment explanation
Indices: 22752852--22752888 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
22752842 TTTTTTAAAA
*
22752852 TATAAAT-TTTGGAATTTT
1 TATAAATATTTAGAATTTT
22752870 TATAAATATTTAGAATTTT
1 TATAAATATTTAGAATTTT
22752889 GGAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:22774910 original size:32 final size:33
Alignment explanation
Indices: 22774811--22774924 Score: 106
Period size: 33 Copynumber: 3.5 Consensus size: 33
22774801 GGTGTACATC
* **
22774811 CCTTTCCAAGTGGTACACACAAAGTATACCTTT
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
** * * *
22774844 CCTTTTTATA-TGGTATACACTAAGTATACCTAA
1 CCTTTCCA-AGTGGTACACACAAAGTATACATAA
*
22774877 CCTTTCCAAGT-GTACACACAAAGTGTACATAA
1 CCTTTCCAAGTGGTACACACAAAGTATACATAA
* *
22774909 CCTTTTCAAGTTGTAC
1 CCTTTCCAAGTGGTAC
22774925 CATTTGGGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
32 28 0.43
33 36 0.55
34 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (33 bp):
CCTTTCCAAGTGGTACACACAAAGTATACATAA
Found at i:22776747 original size:20 final size:20
Alignment explanation
Indices: 22776722--22776770 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
22776712 GCACATGCCT
* *
22776722 GTGTGGCCTGGGACACGCCC
1 GTGTGGCCTCGAACACGCCC
*
22776742 GTGTGGCCTCGAACATGCCC
1 GTGTGGCCTCGAACACGCCC
*
22776762 GTATGGCCT
1 GTGTGGCCT
22776771 ACCCATGGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.33, G:0.35, T:0.20
Consensus pattern (20 bp):
GTGTGGCCTCGAACACGCCC
Found at i:22777680 original size:3 final size:3
Alignment explanation
Indices: 22777674--22777704 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
22777664 CAATTATTAG
*
22777674 ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
22777705 GTAAATATCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:22781381 original size:40 final size:40
Alignment explanation
Indices: 22781321--22781504 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
22781311 TATTCGAATG
*
22781321 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
22781361 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
22781401 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
22781441 ATATCCGAGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
22781481 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22781505 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:22781454 original size:80 final size:80
Alignment explanation
Indices: 22781321--22781504 Score: 257
Period size: 80 Copynumber: 2.3 Consensus size: 80
22781311 TATTCGAATG
* * *
22781321 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
22781385 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
22781401 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCC-GAGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGA-CTAAGTCCCGAAGGC
*
22781465 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
22781481 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22781505 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
79 5 0.05
80 89 0.95
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:22784844 original size:17 final size:17
Alignment explanation
Indices: 22784822--22784855 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22784812 TACATTTTGG
22784822 CATCGTGTTTCCCACAC
1 CATCGTGTTTCCCACAC
22784839 CATCGTGTTTCCCACAC
1 CATCGTGTTTCCCACAC
22784856 TTCCAACACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.12, T:0.29
Consensus pattern (17 bp):
CATCGTGTTTCCCACAC
Found at i:22787147 original size:40 final size:40
Alignment explanation
Indices: 22787063--22787246 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
22787053 TTGAATGCTG
* * * *
22787063 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
22787102 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22787143 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
22787183 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
*
22787223 TCCGGTTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22787247 GTATGAGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.02
40 112 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:22787200 original size:80 final size:81
Alignment explanation
Indices: 22787063--22787243 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
22787053 TTGAATGCTG
* *
22787063 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
22787127 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
22787143 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
22787204 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
*
22787223 TCCGGTTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
22787244 ATTGTATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:22789803 original size:33 final size:33
Alignment explanation
Indices: 22789764--22789855 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 33
22789754 GAGGTGTACA
22789764 TTCCTTTCCAAGTGGTACACACAAAGTATACCT
1 TTCCTTTCCAAGTGGTACACACAAAGTATACCT
* * * *
22789797 TTCCTTTTCATA-TGGTATACACTAAGTATACGT
1 TTCCTTTCCA-AGTGGTACACACAAAGTATACCT
** *
22789830 AACCTTTCCAAGT-GTACACATAAAGT
1 TTCCTTTCCAAGTGGTACACACAAAGT
22789856 GTACATAACC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
32 11 0.23
33 35 0.74
34 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.34
Consensus pattern (33 bp):
TTCCTTTCCAAGTGGTACACACAAAGTATACCT
Found at i:22793815 original size:25 final size:25
Alignment explanation
Indices: 22793781--22793833 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
22793771 ATTGCATAAA
22793781 ATACAAAAGTTAAGTTATAGTAGCT
1 ATACAAAAGTTAAGTTATAGTAGCT
*
22793806 ATACAAAAGTTAAGTTCTAGTAGCT
1 ATACAAAAGTTAAGTTATAGTAGCT
22793831 ATA
1 ATA
22793834 GGTAGTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.32
Consensus pattern (25 bp):
ATACAAAAGTTAAGTTATAGTAGCT
Found at i:22795094 original size:25 final size:26
Alignment explanation
Indices: 22795022--22795097 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 26
22795012 GTAGGCTCTT
22795022 CATGAGCTTCCCGTTATACA-GCTCGA
1 CATGAGCTTCCCGTTATA-AGGCTCGA
* * * *
22795048 -ATAAGCTTCCCGATACATGGCTC-A
1 CATGAGCTTCCCGTTATAAGGCTCGA
*
22795072 CATGAGCTTCCTGTTATAAGGCTCGA
1 CATGAGCTTCCCGTTATAAGGCTCGA
22795098 GAGTGTGGTT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
24 1 0.03
25 36 0.95
26 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
CATGAGCTTCCCGTTATAAGGCTCGA
Found at i:22814451 original size:40 final size:40
Alignment explanation
Indices: 22814337--22814478 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
22814327 TATTCGGATG
* * * *
22814337 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACT
1 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
22814377 A-ATTCTGGCCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCAGG-CTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
22814417 ATAACCAGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
22814457 ATATCCA-GCTAAACCCCGAAGG
1 ATAACCAGGCTAAGTCCCGAAGG
22814479 TACTTGGTTG
Statistics
Matches: 86, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
39 19 0.22
40 63 0.73
41 4 0.05
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (40 bp):
ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22823430 original size:49 final size:49
Alignment explanation
Indices: 22823377--22823479 Score: 179
Period size: 49 Copynumber: 2.1 Consensus size: 49
22823367 TCATGTCGTG
* *
22823377 ACATCCCTAGAAGACTACTCATGTCGTGACACAGGTTAGTGATGTCGCA
1 ACATCCCTAGAAGACTACTCATGTCATGACACAAGTTAGTGATGTCGCA
*
22823426 ACATCCCTAGAAGACTACTCATGTCATGACACAAGTTAGTGATGTCGCG
1 ACATCCCTAGAAGACTACTCATGTCATGACACAAGTTAGTGATGTCGCA
22823475 ACATC
1 ACATC
22823480 GGGTTGATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (49 bp):
ACATCCCTAGAAGACTACTCATGTCATGACACAAGTTAGTGATGTCGCA
Found at i:22836813 original size:48 final size:49
Alignment explanation
Indices: 22836739--22836834 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 49
22836729 GCACACGGGT
* * *
22836739 GTGTGCCTTGGCCGTGTGCCCTTAGATGGATGATGACATCATAAATAGC
1 GTGTGCCTAGGCCGTGTGCCCCTAGATGGATGACGACATCATAAATAGC
*
22836788 GTGTG-CTAGGCCGTGTGCCCCTAGATGGATGACGACGTCATAAATAG
1 GTGTGCCTAGGCCGTGTGCCCCTAGATGGATGACGACATCATAAATAG
22836835 AATGTCCAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 38 0.88
49 5 0.12
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (49 bp):
GTGTGCCTAGGCCGTGTGCCCCTAGATGGATGACGACATCATAAATAGC
Found at i:22837000 original size:20 final size:20
Alignment explanation
Indices: 22836975--22837012 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
22836965 CAGTTAAGGG
22836975 ACACGGGCGTGTCCCAATGC
1 ACACGGGCGTGTCCCAATGC
22836995 ACACGGGCGTGTCCCAAT
1 ACACGGGCGTGTCCCAAT
22837013 ACACCCAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAATGC
Found at i:22837026 original size:20 final size:20
Alignment explanation
Indices: 22836975--22837026 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
22836965 CAGTTAAGGG
* *
22836975 ACACGGGCGTGTCCCAATGC
1 ACACAGGCGTGTCCCAATAC
*
22836995 ACACGGGCGTGTCCCAATAC
1 ACACAGGCGTGTCCCAATAC
* *
22837015 ACCCAGGTGTGT
1 ACACAGGCGTGT
22837027 GCATTGCCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.17
Consensus pattern (20 bp):
ACACAGGCGTGTCCCAATAC
Found at i:22839909 original size:24 final size:24
Alignment explanation
Indices: 22839879--22839927 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
22839869 CAAATAAAAC
22839879 TCTAAAGTACACTGAAACTCTAAT
1 TCTAAAGTACACTGAAACTCTAAT
*
22839903 TCTAAAGTACACTGAAACTTTAAT
1 TCTAAAGTACACTGAAACTCTAAT
22839927 T
1 T
22839928 AATCTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (24 bp):
TCTAAAGTACACTGAAACTCTAAT
Found at i:22842631 original size:29 final size:29
Alignment explanation
Indices: 22842568--22842630 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
22842558 TTTTAAATTT
*
22842568 TAAAAATGATAAGATTAAATTATTTAAAA
1 TAAAAATGATAAGATTAAATTATCTAAAA
22842597 TAAAAATAGA-AAGATTAAA-T-TCTAAATA
1 TAAAAAT-GATAAGATTAAATTATCTAAA-A
22842625 TAAAAA
1 TAAAAA
22842631 AAATACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 5 0.16
28 8 0.26
29 16 0.52
30 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (29 bp):
TAAAAATGATAAGATTAAATTATCTAAAA
Found at i:22843875 original size:69 final size:69
Alignment explanation
Indices: 22843764--22843901 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
22843754 ACAACCATTC
22843764 CACCTAGATAACATCATATAATTTTTGTAAAAATGTGTAATTGCATAATTAGATGAATATTACAA
1 CACCTAGATAACATCATATAATTTTTGTAAAAATGTGTAATTGCATAATTAGATGAATATTACAA
22843829 ATTT
66 ATTT
*
22843833 CACCTAGATAACATCATATAATTTTTGTAAAAATGTGTAATTGCATGATTAGATGAATATTACAA
1 CACCTAGATAACATCATATAATTTTTGTAAAAATGTGTAATTGCATAATTAGATGAATATTACAA
22843898 ATTT
66 ATTT
22843902 GGTAATAAGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (69 bp):
CACCTAGATAACATCATATAATTTTTGTAAAAATGTGTAATTGCATAATTAGATGAATATTACAA
ATTT
Found at i:22859589 original size:43 final size:43
Alignment explanation
Indices: 22859541--22859685 Score: 249
Period size: 43 Copynumber: 3.4 Consensus size: 43
22859531 CCCAACTATG
*
22859541 GTCTTACACGA-AATCAAATAATGATGCCAATGTCCCAGACA-T
1 GTCTTACAC-ATAATCAAATAATGATGCCAATGTCCTAGACATT
22859583 GTTCTTACACATAATCAAATAATGATGCCAATGTCCTAGACATT
1 G-TCTTACACATAATCAAATAATGATGCCAATGTCCTAGACATT
22859627 GTCTTACACATAATCAAATAATGATGCCAATGTCCTAGACATT
1 GTCTTACACATAATCAAATAATGATGCCAATGTCCTAGACATT
22859670 GTCTTACACATAATCA
1 GTCTTACACATAATCA
22859686 CATCTTGCTA
Statistics
Matches: 99, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
42 2 0.02
43 95 0.96
44 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (43 bp):
GTCTTACACATAATCAAATAATGATGCCAATGTCCTAGACATT
Found at i:22861894 original size:49 final size:48
Alignment explanation
Indices: 22861823--22861949 Score: 157
Period size: 49 Copynumber: 2.6 Consensus size: 48
22861813 TGTTGTGTGT
*
22861823 CAGTGTAAGA-CTGTCTAGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGAC-CCGATAGATGAAAGC
* * * * *
22861871 CAGTGTAAGACCTGTCTGGGACATGACATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTAGGACATGGCATCGACC-CGATAGATGAAAGC
* *
22861920 TAGTGTAAGACCTGTCTAGGATATGGCATC
1 CAGTGTAAGACCTGTCTAGGACATGGCATC
22861950 TACTTTGATG
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 11 0.16
49 56 0.84
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTAGGACATGGCATCGACCCGATAGATGAAAGC
Found at i:22861946 original size:141 final size:145
Alignment explanation
Indices: 22861682--22861994 Score: 351
Period size: 141 Copynumber: 2.2 Consensus size: 145
22861672 ACATTATGAG
* * * ** * * *
22861682 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCGGCATTG--AGACGAGAACTAGTGTAAGACA
1 AGCCAGTGTAAGATCATGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACA
* * * *
22861743 TGTTTGGGACATGCATCAGCCTGGAAATATACAAGTTAGTGTAATACTTGTCTAGGACATGGCAT
66 TGTCTGGGACATGCATCAGCCTCGAAATATACAAGTTAGTGTAAGACCTGTCTAGGACATGGCAT
*
22861808 -TAGC-TTGTTGTG-T
131 CTA-CTTTGATGTGTT
* *
22861821 -GTCAGTGTAAGA-C-TGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACC
1 AGCCAGTGTAAGATCATGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACA
* * *
22861883 TGTCTGGGACATGACATCGGCCTCGATATATGA-AAGTTAGTGTAAGACCTGTCTAGGATATGGC
66 TGTCTGGGACATG-CATCAGCCTCGAAATAT-ACAAGTTAGTGTAAGACCTGTCTAGGACATGGC
22861947 ATCTACTTTGATGTGTT
129 ATCTACTTTGATGTGTT
*
22861964 AGCCAGTGTAAGATCATGTCTGGGACATGGC
1 AGCCAGTGTAAGATCATGTCTAGGACATGGC
22861995 GTCGGCATCT
Statistics
Matches: 143, Mismatches: 20, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
137 11 0.08
138 20 0.14
140 30 0.21
141 45 0.31
142 10 0.07
143 1 0.01
144 11 0.08
145 1 0.01
146 14 0.10
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (145 bp):
AGCCAGTGTAAGATCATGTCTAGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTAAGACA
TGTCTGGGACATGCATCAGCCTCGAAATATACAAGTTAGTGTAAGACCTGTCTAGGACATGGCAT
CTACTTTGATGTGTT
Found at i:22863959 original size:20 final size:21
Alignment explanation
Indices: 22863934--22863972 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
22863924 GTGTCATGGA
22863934 AAAATTTTCTAA-GTTTTCCC
1 AAAATTTTCTAAGGTTTTCCC
22863954 AAAATTTTCTAAGGTTTTC
1 AAAATTTTCTAAGGTTTTC
22863973 AGTTTAGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (21 bp):
AAAATTTTCTAAGGTTTTCCC
Found at i:22865821 original size:47 final size:47
Alignment explanation
Indices: 22865747--22865842 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
22865737 TTATTAAGAA
*
22865747 GACATAATGGTGACAATGAGATAAAATAGGGTTGTATTGAGTGAATG
1 GACACAATGGTGACAATGAGATAAAATAGGGTTGTATTGAGTGAATG
*
22865794 GACACAATGGTGGCAATGAGATAAAATAGGGTTGTATTGAGTGAATG
1 GACACAATGGTGACAATGAGATAAAATAGGGTTGTATTGAGTGAATG
22865841 GA
1 GA
22865843 TTTAACTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.26
Consensus pattern (47 bp):
GACACAATGGTGACAATGAGATAAAATAGGGTTGTATTGAGTGAATG
Found at i:22879149 original size:48 final size:48
Alignment explanation
Indices: 22879086--22879215 Score: 206
Period size: 48 Copynumber: 2.7 Consensus size: 48
22879076 CGAGTCATAA
* * * *
22879086 CTTGATTTGGTTTCGGTCCATGGTATAGGTATTTCAGAGATGAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCAGAGATAAGTTAC
*
22879134 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCGGAGATAAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCAGAGATAAGTTAC
*
22879182 CTTGATTTTGCTTCGGGCCATGGTATAGGTACTT
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTT
22879216 ATTGTGCGAG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.38
Consensus pattern (48 bp):
CTTGATTTGGCTTCGGGCCATGGTATAGGTACTTCAGAGATAAGTTAC
Found at i:22880859 original size:22 final size:23
Alignment explanation
Indices: 22880829--22880872 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22880819 GATTTATGAG
*
22880829 AATGAATGCTTTATGTT-TGATA
1 AATGAATGCTATATGTTGTGATA
*
22880851 AATGTATGCTATATGTTGTGAT
1 AATGAATGCTATATGTTGTGAT
22880873 TTGATCAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (23 bp):
AATGAATGCTATATGTTGTGATA
Found at i:22885715 original size:48 final size:48
Alignment explanation
Indices: 22885649--22885777 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
22885639 CGAGTCATAA
* * *
22885649 CTTGATTTGGCTTCGGGCCATGGTATAGGTATTTCGGAGATGAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGAGATAAGTTAC
*
22885697 CTTGATTTGGCTTTGGGCCATGGTATAGGTACTCCGGAGATAAGTTAC
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGAGATAAGTTAC
* *
22885745 CTTAATTTTGCTTCGGGCCATGGTATAGGTACT
1 CTTGATTTGGCTTCGGGCCATGGTATAGGTACT
22885778 TATTGTGTGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.19, C:0.16, G:0.29, T:0.36
Consensus pattern (48 bp):
CTTGATTTGGCTTCGGGCCATGGTATAGGTACTCCGGAGATAAGTTAC
Found at i:22890245 original size:22 final size:23
Alignment explanation
Indices: 22890215--22890258 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
22890205 GATTTATGAG
*
22890215 AATGAATGCTTTATGTT-TGATA
1 AATGAATGCTATATGTTGTGATA
*
22890237 AATGTATGCTATATGTTGTGAT
1 AATGAATGCTATATGTTGTGAT
22890259 TTGATCGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.30, C:0.05, G:0.20, T:0.45
Consensus pattern (23 bp):
AATGAATGCTATATGTTGTGATA
Found at i:22891970 original size:26 final size:26
Alignment explanation
Indices: 22891941--22891995 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22891931 TTTGTGTAAT
22891941 CCAACTCAAACACAAGTGGATTAACA
1 CCAACTCAAACACAAGTGGATTAACA
* *
22891967 CCAACTTAAACACAAGTGGGTTAACA
1 CCAACTCAAACACAAGTGGATTAACA
22891993 CCA
1 CCA
22891996 TAAATAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.27, G:0.13, T:0.16
Consensus pattern (26 bp):
CCAACTCAAACACAAGTGGATTAACA
Found at i:22899459 original size:47 final size:48
Alignment explanation
Indices: 22899401--22899532 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 48
22899391 CACAATCAAT
*
22899401 AAGTACTTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCCG
* * * * * **
22899448 AAGTACCTATACTATAGCTCGTAGCCAAATCGAGGTAACTTCTCTTTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCCG
*
22899496 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
22899533 TCATTCGCAC
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 38 0.54
48 33 0.46
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTCCG
Found at i:22899522 original size:48 final size:47
Alignment explanation
Indices: 22899408--22899532 Score: 169
Period size: 48 Copynumber: 2.6 Consensus size: 47
22899398 AATAAGTACT
*
22899408 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAGTACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAATACC
* * * * * **
22899455 TATACTATAGCTCGTAGCCAAATCGAGGTAACTTCTCTTTGAAATACC
1 TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATC-CCGAAATACC
22899503 TATACCATGGCCCGTAGCCAAATCAAGGTA
1 TATACCATGGCCCGTAGCCAAATCAAGGTA
22899533 TCATTCGCAC
Statistics
Matches: 65, Mismatches: 12, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
47 32 0.49
48 33 0.51
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (47 bp):
TATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCGAAATACC
Found at i:22909496 original size:26 final size:26
Alignment explanation
Indices: 22909464--22909514 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22909454 ATTTTCTAAG
22909464 TCAGCATCTAGTTCAGGATTGGTTGA
1 TCAGCATCTAGTTCAGGATTGGTTGA
*
22909490 TCAGCATCTGGTTCAGGATTGGTTG
1 TCAGCATCTAGTTCAGGATTGGTTG
22909515 GTGACTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.35
Consensus pattern (26 bp):
TCAGCATCTAGTTCAGGATTGGTTGA
Found at i:22913697 original size:45 final size:44
Alignment explanation
Indices: 22913633--22913859 Score: 207
Period size: 43 Copynumber: 5.2 Consensus size: 44
22913623 GATATCGAAA
** *
22913633 GCCCGAATAGTATCTCACCGGCATTATAGCATGCTAGGCTCAAAG
1 GCCCGAATAGTATCTCACCGGCACGA-AGCATGCTAGGCACAAAG
* *
22913678 GCCCGAATAGTAT-TCCACCGGCACGAAGCCTGCTAGGCACGAAG
1 GCCCGAATAGTATCT-CACCGGCACGAAGCATGCTAGGCACAAAG
* * *
22913722 GCCCGAATA-CA-CATCACCGGCACGAAGCCTGCTAGGCACGAAG
1 GCCCGAATAGTATC-TCACCGGCACGAAGCATGCTAGGCACAAAG
* * * *
22913765 GCCCAAATA-CA-CATCACCGGCACGAAGCCTGCTAGGCACGAAG
1 GCCCGAATAGTATC-TCACCGGCACGAAGCATGCTAGGCACAAAG
* * * * *
22913808 GCCTGAATA-CA-CATCACCGGCAAGAAGCCTGCTAGGCACGAAG
1 GCCCGAATAGTATC-TCACCGGCACGAAGCATGCTAGGCACAAAG
22913851 GCCCGAATA
1 GCCCGAATA
22913860 TAATACCAGC
Statistics
Matches: 168, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
43 120 0.71
44 26 0.15
45 22 0.13
ACGTcount: A:0.30, C:0.32, G:0.25, T:0.13
Consensus pattern (44 bp):
GCCCGAATAGTATCTCACCGGCACGAAGCATGCTAGGCACAAAG
Found at i:22913754 original size:43 final size:43
Alignment explanation
Indices: 22913693--22913859 Score: 307
Period size: 43 Copynumber: 3.9 Consensus size: 43
22913683 AATAGTATTC
22913693 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
1 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
*
22913736 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACAT
1 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
*
22913779 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACACAT
1 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
*
22913822 CACCGGCAAGAAGCCTGCTAGGCACGAAGGCCCGAATA
1 CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATA
22913860 TAATACCAGC
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 119 1.00
ACGTcount: A:0.31, C:0.34, G:0.26, T:0.10
Consensus pattern (43 bp):
CACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACAT
Found at i:22919050 original size:39 final size:39
Alignment explanation
Indices: 22919007--22919125 Score: 193
Period size: 39 Copynumber: 3.1 Consensus size: 39
22918997 TGTGAATATA
* *
22919007 TATATGCGAGAATTATATTCGGACTTCATGTCCGCATGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
22919046 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
* * *
22919085 TATATGCGAGAATTATATCCGGACTTTAGGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
22919124 TA
1 TA
22919126 CGTGCTGGAC
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
Found at i:22932195 original size:12 final size:11
Alignment explanation
Indices: 22932164--22932199 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
22932154 TTTTTAAAAA
22932164 AATTAAAAACT
1 AATTAAAAACT
22932175 AATTAAAAACT
1 AATTAAAAACT
*
22932186 AAGTTTAAAACT
1 AA-TTAAAAACT
22932198 AA
1 AA
22932200 AACATAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.28
Consensus pattern (11 bp):
AATTAAAAACT
Found at i:22951744 original size:30 final size:30
Alignment explanation
Indices: 22951710--22951769 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22951700 CTTTAATACG
*
22951710 AACTTTGGCAAAATTAC-CATTTTTCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
22951740 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
22951770 GGCTGGGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:22956797 original size:49 final size:49
Alignment explanation
Indices: 22956575--22956813 Score: 237
Period size: 49 Copynumber: 4.8 Consensus size: 49
22956565 GTAGCTGAAG
* * * * * *
22956575 CTATCTGGTACGCATAGTGGCCGGCACTTAGTACTACAGATGCTACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * *
22956624 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACT-TGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AA
* * * * * * *
22956674 CCATCTGATACACGTAGTAGTCTGTACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* * * *
22956724 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
22956774 CAATCTGGTACACGTAGTAGCCTGCACTTACTACTACACA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
22956814 CGTGACCTCA
Statistics
Matches: 151, Mismatches: 34, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
49 70 0.46
50 45 0.30
51 36 0.24
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:22956814 original size:100 final size:101
Alignment explanation
Indices: 22956624--22956818 Score: 277
Period size: 100 Copynumber: 1.9 Consensus size: 101
22956614 ATGCTACCAA
* * * * *
22956624 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTATACACTTGACCTAACCATCTGATACACGT
1 TTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACTCGACCTAACAATCTGATACACGT
* * *
22956689 AGTAGTCTGTACTTAGTACTACACACGTGATCGAAG
66 AGTAGCCTGCACTTACTACTACACACGTGATCGAAG
* *
22956725 TTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGCGACC-AACAATCTGGTACACG
1 TTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACT-CGACCTAACAATCTGATACACG
22956788 TAGTAGCCTGCACTTACTACTACACACGTGA
65 TAGTAGCCTGCACTTACTACTACACACGTGA
22956819 CCTCACAATA
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
100 43 0.52
101 40 0.48
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (101 bp):
TTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACTCGACCTAACAATCTGATACACGT
AGTAGCCTGCACTTACTACTACACACGTGATCGAAG
Found at i:22957502 original size:30 final size:30
Alignment explanation
Indices: 22957468--22957527 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22957458 CTTTAATACG
*
22957468 AACTTTGGCAAAATTAC-CATTTTTCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
22957498 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
22957528 GGCTGGGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:22958432 original size:18 final size:17
Alignment explanation
Indices: 22958399--22958444 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
22958389 ATTAGACTTA
22958399 TTTAATTT--TTTT-AT
1 TTTAATTTAATTTTAAT
22958413 TTTAATTTTAATTTTAAT
1 TTTAA-TTTAATTTTAAT
22958431 TTTAATTTAATTTT
1 TTTAATTTAATTTT
22958445 GGTTGGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.18
15 3 0.11
17 13 0.46
18 7 0.25
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTAATTTAATTTTAAT
Found at i:22958462 original size:6 final size:6
Alignment explanation
Indices: 22958406--22958444 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
22958396 TTATTTAATT
*
22958406 TTTTTA TTTTAA TTTTAA TTTTAA TTTTAA -TTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
22958445 GGTTGGAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTTAA
Found at i:22959659 original size:41 final size:40
Alignment explanation
Indices: 22959602--22959727 Score: 130
Period size: 39 Copynumber: 3.1 Consensus size: 40
22959592 AATTATTGGA
*
22959602 TGAATGCA-CATATGTGCCCCTGTTTGTACTTCGGTTACCCC
1 TGAATG-AGCATATGTGCCCCTATTTGTACTTCGG-TACCCC
* ** *
22959643 TGAATGTGCATATGTGCCCCTATTCATACTTTGGTA-CCC
1 TGAATGAGCATATGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
22959682 TAAATGAGCATACGTGTCCCTATTTGTACTTCAGTACCCT
1 TGAATGAGCATATGTGCCCCTATTTGTACTTCGGTACCCC
22959722 TGAATG
1 TGAATG
22959728 CACACACGTG
Statistics
Matches: 68, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
39 31 0.46
40 9 0.13
41 28 0.41
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (40 bp):
TGAATGAGCATATGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:22962461 original size:47 final size:47
Alignment explanation
Indices: 22962398--22962951 Score: 1000
Period size: 47 Copynumber: 11.7 Consensus size: 47
22962388 ATGATAGTAT
22962398 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962445 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962492 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
22962539 GGCCTAATGTCCGATGTGATAAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962586 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
22962633 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962680 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962727 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
22962774 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
22962821 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--ATATATGTGATAA
* *
22962870 GGCCTAATGGCCGATGTGATGAATGTTAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
22962919 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
22962952 CCCGAAGGGC
Statistics
Matches: 491, Mismatches: 11, Indels: 7
0.96 0.02 0.01
Matches are distributed among these distances:
47 404 0.82
49 82 0.17
50 4 0.01
51 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:22963125 original size:37 final size:37
Alignment explanation
Indices: 22963069--22963147 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22963059 CCGAGCTCTA
* * *
22963069 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22963106 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22963143 AAGAC
1 AAGAC
22963148 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22967586 original size:37 final size:37
Alignment explanation
Indices: 22967509--22967579 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
22967499 TTATTACGAA
* *
22967509 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
22967546 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCAT
1 GTCTTACCCGGACAAAATCT-CCACACGAAGTCAT
22967580 TTGGTCTGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
36 1 0.03
37 29 0.97
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:22967784 original size:47 final size:47
Alignment explanation
Indices: 22967706--22968071 Score: 581
Period size: 47 Copynumber: 7.7 Consensus size: 47
22967696 CCCTTCGGGA
* * * * * * *
22967706 CTTACCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22967753 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22967800 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22967847 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22967894 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22967941 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22967990 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22968037 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
22968072 AGAATCCTAA
Statistics
Matches: 299, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 251 0.84
49 47 0.16
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22967785 original size:25 final size:25
Alignment explanation
Indices: 22967757--22967834 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
22967747 CTCGGCCCTG
22967757 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
**** ***
22967782 TCACAT-CGGCCA-TTAGGCATT-A
1 TCACATATATACACTTTCACATTCA
22967804 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
22967829 TCACAT
1 TCACAT
22967835 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:22968013 original size:143 final size:141
Alignment explanation
Indices: 22967706--22968071 Score: 581
Period size: 143 Copynumber: 2.6 Consensus size: 141
22967696 CCCTTCGGGA
* * * * * * * * *
22967706 CTTACCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
22967771 TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
22967836 GGCCATTAGGC
131 GGCCATTAGGC
*
22967847 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22967912 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATACACTTTCACATTCATCACA
22967977 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
22967990 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22968054 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
22968072 AGAATCCTAA
Statistics
Matches: 208, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 91 0.44
142 1 0.00
143 116 0.56
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:22971768 original size:40 final size:40
Alignment explanation
Indices: 22971724--22971973 Score: 344
Period size: 40 Copynumber: 6.2 Consensus size: 40
22971714 TCTTCGAGGT
* * *
22971724 TTAGCACGGATATATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
22971764 TTAGCCCGGATACATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
*
22971804 TTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
22971844 TTAGCCCGGATATATCACTAGCACGAATGCT-TCTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCT-TCGGGAC
* *
22971884 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * * *
22971924 TTAGTCTGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGAC
1 TTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTCGGGAC
22971964 TTAGCCCGGA
1 TTAGCCCGGA
22971974 CATCATTCAA
Statistics
Matches: 189, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
40 174 0.92
41 9 0.05
42 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:22972322 original size:29 final size:29
Alignment explanation
Indices: 22972283--22972361 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
22972273 CTTAATAATC
*
22972283 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
22972313 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
22972342 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22972362 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:22974318 original size:37 final size:37
Alignment explanation
Indices: 22974268--22974346 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
22974258 TTATTACGAA
* *
22974268 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
22974305 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCTG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
22974342 GTCTT
1 GTCTT
22974347 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:22974543 original size:47 final size:47
Alignment explanation
Indices: 22974465--22974830 Score: 581
Period size: 47 Copynumber: 7.7 Consensus size: 47
22974455 CCCTTCGGGA
* * * * * * *
22974465 CTTACCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22974512 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974559 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22974606 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974653 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974700 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22974749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22974796 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
22974831 AGAATCCTAA
Statistics
Matches: 299, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 251 0.84
49 47 0.16
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22974544 original size:25 final size:25
Alignment explanation
Indices: 22974516--22974593 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
22974506 CTCGGCCCTG
22974516 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
**** ***
22974541 TCACAT-CGGCCA-TTAGGCATT-A
1 TCACATATATACACTTTCACATTCA
22974563 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
22974588 TCACAT
1 TCACAT
22974594 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:22974772 original size:143 final size:141
Alignment explanation
Indices: 22974465--22974830 Score: 581
Period size: 143 Copynumber: 2.6 Consensus size: 141
22974455 CCCTTCGGGA
* * * * * * * * *
22974465 CTTACCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
22974530 TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
22974595 GGCCATTAGGC
131 GGCCATTAGGC
*
22974606 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22974671 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCATTATCAC--ATATATACACTTTCACATTCATCACA
22974736 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
22974749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22974813 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
22974831 AGAATCCTAA
Statistics
Matches: 208, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 91 0.44
142 1 0.00
143 116 0.56
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:22981914 original size:29 final size:29
Alignment explanation
Indices: 22981871--22981989 Score: 143
Period size: 29 Copynumber: 4.1 Consensus size: 29
22981861 GAAAGCATGA
* *
22981871 ATATGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
22981900 ATATGAATGTAATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* * *
22981929 ATACGAATGTGATTTGGGCCTAATGGGTC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* * *
22981958 ATATGGATG-AGA-TTGGGCCTAGTGAGCC
1 ATATGAATGTA-ATTTGGGCCTAATGGGCC
22981986 ATAT
1 ATAT
22981990 ACATGTATGT
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 17 0.22
29 61 0.78
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTAATTTGGGCCTAATGGGCC
Found at i:22986413 original size:27 final size:26
Alignment explanation
Indices: 22986382--22986559 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
22986372 TAAATTGTAC
22986382 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
22986409 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
22986435 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
22986463 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
22986491 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
22986518 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
22986545 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22986560 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:22986498 original size:82 final size:81
Alignment explanation
Indices: 22986383--22986538 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22986373 AAATTGTACA
*
22986383 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
22986447 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
22986464 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
22986529 TGCGAGTTGA
65 TGCGAATTGA
22986539 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22986550 original size:82 final size:81
Alignment explanation
Indices: 22986379--22986559 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22986369 GATTAAATTG
*
22986379 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
22986444 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
22986460 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
22986524 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22986542 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22986560 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22994594 original size:27 final size:26
Alignment explanation
Indices: 22994563--22994740 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
22994553 TAAATTGTAC
22994563 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
22994590 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
22994616 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
22994644 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
22994672 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
22994699 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
22994726 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22994741 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:22994679 original size:82 final size:81
Alignment explanation
Indices: 22994564--22994719 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22994554 AAATTGTACA
*
22994564 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
22994628 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
22994645 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
22994710 TGCGAGTTGA
65 TGCGAATTGA
22994720 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22994731 original size:82 final size:81
Alignment explanation
Indices: 22994560--22994740 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22994550 GATTAAATTG
*
22994560 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
22994625 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
22994641 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
22994705 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22994723 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22994741 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22999168 original size:24 final size:24
Alignment explanation
Indices: 22999141--22999211 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
22999131 TTGTCATGAG
22999141 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
22999165 AGGATTTAGGAGTTAATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
22999189 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
22999212 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:23000669 original size:27 final size:27
Alignment explanation
Indices: 23000629--23000721 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
23000619 AGGAAGCATC
*
23000629 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
23000656 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
23000683 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
*
23000711 CTGGTGACTCT
1 CTGGTGGCTCT
23000722 ATCACATTAT
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.05
27 41 0.71
28 14 0.24
ACGTcount: A:0.15, C:0.25, G:0.24, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:23000730 original size:27 final size:27
Alignment explanation
Indices: 23000629--23000733 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
23000619 AGGAAGCATC
*
23000629 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
23000656 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
23000683 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* **
23000711 CTGGTGACTCTATCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
23000734 ATTCTGGCAG
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:23000739 original size:54 final size:54
Alignment explanation
Indices: 23000629--23000740 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
23000619 AGGAAGCATC
* * * *
23000629 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
* * *
23000683 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTATT
23000737 CTGG
1 CTGG
23000741 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTATT
Found at i:23002242 original size:42 final size:43
Alignment explanation
Indices: 23002183--23002278 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 43
23002173 AATGATATTT
* *
23002183 GGGCTTTATT-TTCTAGCAGGCTTTATGCCAGTGTATTATATC
1 GGGCTTTATTGCTCTAGCAGGCTTTATGCCAGTGTATCATATC
*
23002225 GGGCTTTATTGCT-TAGCAGGCTTTATGCCGGTGTATCATATC
1 GGGCTTTATTGCTCTAGCAGGCTTTATGCCAGTGTATCATATC
*
23002267 AGGCTTTATTGC
1 GGGCTTTATTGC
23002279 AACAGAATCA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 48 0.98
43 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.24, T:0.41
Consensus pattern (43 bp):
GGGCTTTATTGCTCTAGCAGGCTTTATGCCAGTGTATCATATC
Found at i:23008726 original size:17 final size:18
Alignment explanation
Indices: 23008689--23008726 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
23008679 TGTTTAAAAC
*
23008689 TTTTATTTATTATTATGT
1 TTTTATTTATTATTATAT
*
23008707 TTTTATTT-TTATTCTAT
1 TTTTATTTATTATTATAT
23008724 TTT
1 TTT
23008727 AAGACTACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTATTTATTATTATAT
Found at i:23037391 original size:21 final size:21
Alignment explanation
Indices: 23037367--23037409 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23037357 TGTTGTGACC
* * *
23037367 TTATTTTATAATGGTTTTATA
1 TTATTTCATAAAGGTTATATA
23037388 TTATTTCATAAAGGTTATATA
1 TTATTTCATAAAGGTTATATA
23037409 T
1 T
23037410 GTAAAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (21 bp):
TTATTTCATAAAGGTTATATA
Found at i:23038358 original size:56 final size:56
Alignment explanation
Indices: 23038291--23038458 Score: 237
Period size: 56 Copynumber: 3.0 Consensus size: 56
23038281 GACCATGGTA
* * *
23038291 TCGATATATGTGTACAAGTAAGACCACGTTTAATATGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
*
23038347 TCGATAAATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
* * * * * * *
23038403 CCGATATATGTGTGTGAGTAAGACCACATCTAGTGCATTGGCATCGATATGTGATT
1 TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
23038459 ACATGTAAGA
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 100 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
Found at i:23048595 original size:39 final size:39
Alignment explanation
Indices: 23048536--23048618 Score: 148
Period size: 39 Copynumber: 2.1 Consensus size: 39
23048526 AGTATCTCGA
*
23048536 TTTGTGGCATATCGTCTCTTTTTTATATACTTCCAGTTC
1 TTTGGGGCATATCGTCTCTTTTTTATATACTTCCAGTTC
*
23048575 TTTGGGGCATATCGTCTCTTTTTTATGTACTTCCAGTTC
1 TTTGGGGCATATCGTCTCTTTTTTATATACTTCCAGTTC
23048614 TTTGG
1 TTTGG
23048619 CATTTCTTAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.13, C:0.19, G:0.17, T:0.51
Consensus pattern (39 bp):
TTTGGGGCATATCGTCTCTTTTTTATATACTTCCAGTTC
Found at i:23054637 original size:8 final size:8
Alignment explanation
Indices: 23054593--23054649 Score: 57
Period size: 8 Copynumber: 7.4 Consensus size: 8
23054583 CTAAAAAATT
23054593 TAATTAAA
1 TAATTAAA
23054601 TAA--AAA
1 TAATTAAA
*
23054607 TTATT-AA
1 TAATTAAA
* *
23054614 TGATTCAA
1 TAATTAAA
23054622 TAAATTAAA
1 T-AATTAAA
23054631 TAATTAAA
1 TAATTAAA
23054639 TAATTAAA
1 TAATTAAA
23054647 TAA
1 TAA
23054650 AATTAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
6 5 0.12
7 6 0.15
8 24 0.59
9 6 0.15
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (8 bp):
TAATTAAA
Found at i:23055467 original size:16 final size:16
Alignment explanation
Indices: 23055426--23055467 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
23055416 AAAGTTGATA
23055426 ATAATTAATATATATT
1 ATAATTAATATATATT
*
23055442 ATAATGAATATA-ATT
1 ATAATTAATATATATT
23055457 ATATATTAATA
1 ATA-ATTAATA
23055468 ATTATCATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:23065561 original size:18 final size:18
Alignment explanation
Indices: 23065538--23065576 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23065528 AGGCCATAAT
23065538 TGGGCTTCGTGAGC-CACA
1 TGGGCTT-GTGAGCACACA
*
23065556 TGGGCTTGTGGGCACACA
1 TGGGCTTGTGAGCACACA
23065574 TGG
1 TGG
23065577 CCCACATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (18 bp):
TGGGCTTGTGAGCACACA
Found at i:23065712 original size:27 final size:27
Alignment explanation
Indices: 23065681--23065757 Score: 136
Period size: 27 Copynumber: 2.9 Consensus size: 27
23065671 TGTACCTAAA
* *
23065681 CCCTTATGTGATAAAATGATGATATTG
1 CCCTTAAGTGATAAAATGACGATATTG
23065708 CCCTTAAGTGATAAAATGACGATATTG
1 CCCTTAAGTGATAAAATGACGATATTG
23065735 CCCTTAAGTGATAAAATGACGAT
1 CCCTTAAGTGATAAAATGACGAT
23065758 TTTACCCTCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (27 bp):
CCCTTAAGTGATAAAATGACGATATTG
Found at i:23065765 original size:27 final size:27
Alignment explanation
Indices: 23065680--23065765 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
23065670 GTGTACCTAA
* *
23065680 ACCCTTATGTGATAAAATGATGATATT
1 ACCCTTAAGTGATAAAATGACGATATT
*
23065707 GCCCTTAAGTGATAAAATGACGATATT
1 ACCCTTAAGTGATAAAATGACGATATT
* *
23065734 GCCCTTAAGTGATAAAATGACGATTTT
1 ACCCTTAAGTGATAAAATGACGATATT
23065761 ACCCT
1 ACCCT
23065766 CATAGGGTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (27 bp):
ACCCTTAAGTGATAAAATGACGATATT
Found at i:23066599 original size:27 final size:27
Alignment explanation
Indices: 23066565--23066617 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
23066555 ATGATTTATG
23066565 AAAGCCTATCATTTTAAGAAAAAATTT
1 AAAGCCTATCATTTTAAGAAAAAATTT
23066592 AAAGCCTATCATTTTAAGAAAAAATT
1 AAAGCCTATCATTTTAAGAAAAAATT
23066618 AAGTTGTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAGCCTATCATTTTAAGAAAAAATTT
Found at i:23067687 original size:29 final size:29
Alignment explanation
Indices: 23067649--23067721 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
23067639 CACTAAGCTC
* * *
23067649 AATCTCATTCATATGGCCTATTAGGCCCA
1 AATCACATTCATATAGCCCATTAGGCCCA
*
23067678 AATCACATTCGTATAGCCCATTAGGCCCA
1 AATCACATTCATATAGCCCATTAGGCCCA
23067707 AATCACATTCATATA
1 AATCACATTCATATA
23067722 CATGCTTTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (29 bp):
AATCACATTCATATAGCCCATTAGGCCCA
Found at i:23071699 original size:27 final size:28
Alignment explanation
Indices: 23071648--23071801 Score: 122
Period size: 27 Copynumber: 5.7 Consensus size: 28
23071638 TTCGTAAATT
* * *
23071648 GCCAAAAAGGCTTCCTTTTCATAGA-CA
1 GCCAAAAAGGCTTCCATCTCTTAGATCA
* *
23071675 GCCAGAAAGGCTTCCATCTCTTAGAT-T
1 GCCAAAAAGGCTTCCATCTCTTAGATCA
* * *
23071702 GCCACAAAGGTTTCCATCTCTTA-AGT-T
1 GCCAAAAAGGCTTCCATCTCTTAGA-TCA
* ** *
23071729 GCCGACTAGGCTTTCATCTCTTAGATCA
1 GCCAAAAAGGCTTCCATCTCTTAGATCA
* *
23071757 -CCATAAAGGGTTCCATCTCTTAGATCA
1 GCCAAAAAGGCTTCCATCTCTTAGATCA
*
23071784 -CCAAAAAAGCTTCCATCT
1 GCCAAAAAGGCTTCCATCT
23071802 TTTTAGTGTG
Statistics
Matches: 100, Mismatches: 23, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
GCCAAAAAGGCTTCCATCTCTTAGATCA
Found at i:23081516 original size:48 final size:48
Alignment explanation
Indices: 23081350--23081566 Score: 207
Period size: 48 Copynumber: 4.5 Consensus size: 48
23081340 CCATCAAGTT
* * *
23081350 GATGCCATGTTCCAGACATGGTCTTACACTGACTATCAAAATA-G-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCAATATACGTA--CC
* * * *
23081399 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCCATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CA-ATATACGTACC
* * *
23081449 GATGCCATGTCCCAAACATGGTCTTACATTGACACCATTATACGTACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCAATATACGTACC
* *
23081497 GATGCCATGTCCCAGACATGGTCTTACACTGACA-C-ATCT-CGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACCAATATACGTA-CC
23081543 GATG-CATGTCCCAGACAT-GTCTTA
1 GATGCCATGTCCCAGACATGGTCTTA
23081567 TACTAGCTCT
Statistics
Matches: 142, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
44 6 0.04
45 18 0.13
46 7 0.05
47 1 0.01
48 40 0.28
49 34 0.24
50 35 0.25
51 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACCAATATACGTACC
Found at i:23081517 original size:98 final size:95
Alignment explanation
Indices: 23081300--23081526 Score: 262
Period size: 98 Copynumber: 2.3 Consensus size: 95
23081290 AAGGTATAAT
* * * ** * *
23081300 GCCGATGCTATGTCCCAGACATGGTCTTACATTGGCTCATCCATCAAGTTGATGCCATGTTCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCCCAA
*
23081365 ACATGGTCTTACACTGACTATCAAAATAGA
66 ACATGGTCTTACACTGACTACCAAAATAGA
*
23081395 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCATGCCGATGCCATGT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--AT-CAAGCCGATGCCATGT
* **
23081459 CCCAAACATGGTCTTACATTGAC-ACCATTATACGTA
61 CCCAAACATGGTCTTACACTGACTACCAAAATA-G-A
23081495 -CCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
23081527 GACACATCTC
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
95 2 0.02
96 36 0.32
98 40 0.35
99 34 0.30
100 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCCCAA
ACATGGTCTTACACTGACTACCAAAATAGA
Done.