Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 75 of 320
Found at i:23485940 original size:48 final size:46
Alignment explanation
Indices: 23485845--23485941 Score: 140
Period size: 48 Copynumber: 2.1 Consensus size: 46
23485835 CACTTGCTTA
* *
23485845 CATCTCAAAGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCT
1 CATCTCAAAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT
* *
23485891 CATCTCAATGCCGATGCAATGTCCCAAACATGGTCTTACACTGGCTCT
1 CATCTCAAAGCCGATGC-ATGTCCCAAACAT-GTCTTACACTAGCTCT
23485939 CAT
1 CAT
23485942 AATGTGGCCG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 16 0.36
47 11 0.24
48 18 0.40
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (46 bp):
CATCTCAAAGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCT
Found at i:23485952 original size:48 final size:45
Alignment explanation
Indices: 23485848--23485976 Score: 127
Period size: 48 Copynumber: 2.8 Consensus size: 45
23485838 TTGCTTACAT
* * *
23485848 CTCAAAGCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCA
1 CTCAATGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCA
*
23485893 TCTCAATGCCGATGCAATGTCCCAAACATGGTCTTACACTGGCTCTCA
1 -CTCAATGCCGATGC-ATGTCCCAAACAT-GTCTTACACTAGCTCTCA
* * *
23485941 -T-AATGTGGCCGATGCATGTCCTAGATATGTCTTACA
1 CTCAA--T-GCCGATGCATGTCCCAAACATGTCTTACA
23485977 TTAGTACACA
Statistics
Matches: 71, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.03
46 22 0.31
47 22 0.31
48 25 0.35
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
CTCAATGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCA
Found at i:23494340 original size:46 final size:46
Alignment explanation
Indices: 23494290--23494462 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
23494280 TGGTTAAGCA
*
23494290 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23494336 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
23494381 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
23494429 CCCGAGCTCGTTGAGTTGATTCTGAGTTTACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
23494463 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.55
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23494446 original size:93 final size:93
Alignment explanation
Indices: 23494287--23494456 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
23494277 GGATGGTTAA
* *
23494287 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
23494352 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
23494380 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
* *
23494445 TGATTCTGAGTT
66 TGAGTCCGAGTT
23494457 TACTTAGGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:23520668 original size:35 final size:35
Alignment explanation
Indices: 23520583--23520669 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
23520573 CTTTCAGGTT
* **
23520583 CAGT-TAGGCCTTAG-CCTATTTCAGTAGTAGTAG
1 CAGTCTAGGCCTTAGCCCAATTTCAGTAACAGTAG
**
23520616 CAGTCTAGGCCAGAGCCCAATTTCAGTAACAGTAG
1 CAGTCTAGGCCTTAGCCCAATTTCAGTAACAGTAG
*
23520651 CAGTCTGGGCCTTAGCCCA
1 CAGTCTAGGCCTTAGCCCA
23520670 TTATCATATC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 4 0.09
34 8 0.18
35 32 0.73
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (35 bp):
CAGTCTAGGCCTTAGCCCAATTTCAGTAACAGTAG
Found at i:23523326 original size:48 final size:49
Alignment explanation
Indices: 23523267--23523492 Score: 274
Period size: 50 Copynumber: 4.6 Consensus size: 49
23523257 ATTTGGTATG
* * * *
23523267 CATAGTAGCCTGCACATAGTACTACACATGCGAGCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
*
23523316 -ATAGTAGCCTGTACTTAGTACTACACACGTGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* ** ***
23523364 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * * *
23523414 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACATTTTTCGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCA-ATTATCCG-GTACA
23523465 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
23523493 TGCGACCTCA
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
48 43 0.28
49 33 0.22
50 45 0.30
51 30 0.20
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:23523431 original size:50 final size:49
Alignment explanation
Indices: 23523269--23523492 Score: 207
Period size: 48 Copynumber: 4.5 Consensus size: 49
23523259 TTGGTATGCA
* * * * ** ** *
23523269 TAGTAGCCTGCACATAGTACTACACATGCGAGCAATTATCCGGTACA-A
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAATACACG
* ** **
23523317 TAGTAGCCTGTACTTAGTACTACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAATACACG
*
23523366 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCAATACACG
**** * * * *
23523416 TAGTAGCCTGCACTTAGTACTACACACGTGATCACATTTTTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCCAATACACG
23523467 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
23523493 TGCGACCTCA
Statistics
Matches: 152, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
48 42 0.28
49 32 0.21
50 42 0.28
51 35 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCAATACACG
Found at i:23523500 original size:101 final size:98
Alignment explanation
Indices: 23523261--23523500 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 98
23523251 AAAGCTATTT
* * * ** **
23523261 GGTATGCATAGTAGCCTGCACATAGTACTACACATGCGAGC-AATTATCCGGTACAATAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAATACAATAGTAGCC
*
23523325 TGTACTTAGTACTACACACGTGACCAATTATCC
66 TGCACTTAGTACTACACACGTGACCAATTATCC
* * * * * *
23523358 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAATACA-ATAGTAGC
* * *
23523423 CTGCACTTAGTACTACACACGTGATCACATTTTTC
65 CTGCACTTAGTACTACACACGTGACCA-ATTATCC
23523458 GAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 G-GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
23523501 CACAATAGAT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
97 34 0.29
98 9 0.08
99 32 0.27
100 6 0.05
101 37 0.31
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (98 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAATACAATAGTAGCC
TGCACTTAGTACTACACACGTGACCAATTATCC
Found at i:23529779 original size:39 final size:39
Alignment explanation
Indices: 23529743--23529895 Score: 189
Period size: 39 Copynumber: 3.9 Consensus size: 39
23529733 TGTACTTATG
* *
23529743 TGCCCTTGTCGTACTTCGGTACCCCTGATCGCACTTACG
1 TGCCCCTGTCGTACTTCGGTACCCCTGATCGCACTTACA
* * * *
23529782 TGTCCCTGTCGTACATCAGTACCCCTAATCGCACTTACA
1 TGCCCCTGTCGTACTTCGGTACCCCTGATCGCACTTACA
* *
23529821 TGCCCCTATCGTACTTCGATACCCCTGATCGCACTTACA
1 TGCCCCTGTCGTACTTCGGTACCCCTGATCGCACTTACA
* * * * *
23529860 TGCCCCAGTTGTACTTCGGTACTCTTGATAGCACTT
1 TGCCCCTGTCGTACTTCGGTACCCCTGATCGCACTT
23529896 TCGTGTCGTG
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 95 1.00
ACGTcount: A:0.18, C:0.35, G:0.16, T:0.31
Consensus pattern (39 bp):
TGCCCCTGTCGTACTTCGGTACCCCTGATCGCACTTACA
Found at i:23529865 original size:20 final size:20
Alignment explanation
Indices: 23529764--23529865 Score: 86
Period size: 20 Copynumber: 5.2 Consensus size: 20
23529754 TACTTCGGTA
*
23529764 CCCCTGATCGCACTTACGTG
1 CCCCTGATCGCACTTACATG
* * * *
23529784 TCCCTG-TCGTACAT-CAGTA
1 CCCCTGATCGCACTTACA-TG
*
23529803 CCCCTAATCGCACTTACATG
1 CCCCTGATCGCACTTACATG
* *
23529823 CCCCT-ATCGTACTT-CGATA
1 CCCCTGATCGCACTTAC-ATG
23529842 CCCCTGATCGCACTTACATG
1 CCCCTGATCGCACTTACATG
23529862 CCCC
1 CCCC
23529866 AGTTGTACTT
Statistics
Matches: 62, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
18 2 0.03
19 26 0.42
20 31 0.50
21 3 0.05
ACGTcount: A:0.20, C:0.40, G:0.14, T:0.26
Consensus pattern (20 bp):
CCCCTGATCGCACTTACATG
Found at i:23535327 original size:46 final size:48
Alignment explanation
Indices: 23535184--23535335 Score: 175
Period size: 48 Copynumber: 3.2 Consensus size: 48
23535174 TCTCAGATAG
* * * * * *
23535184 GTCTTACACTAGCCTGTATATCTCGAGGCGAATGCATGTCCCAGACAT
1 GTCTTACACTGGCTTGTATATATGGAGGCCAATGCATGTCCCAAACAT
* * *
23535232 GTCTTACACTGGCTTGTATATCTGGAGGCCGATGCATATCCCAAACAT
1 GTCTTACACTGGCTTGTATATATGGAGGCCAATGCATGTCCCAAACAT
* *
23535280 GTCTTACACTGGCTCTG-ATA-AT-GTGGTCAATGCATGTCCCAAACAT
1 GTCTTACACTGGCT-TGTATATATGGAGGCCAATGCATGTCCCAAACAT
23535326 GTCTTACACT
1 GTCTTACACT
23535336 AGCACACATA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
46 30 0.33
47 1 0.01
48 58 0.64
49 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
GTCTTACACTGGCTTGTATATATGGAGGCCAATGCATGTCCCAAACAT
Found at i:23539310 original size:49 final size:49
Alignment explanation
Indices: 23539206--23539379 Score: 146
Period size: 49 Copynumber: 3.7 Consensus size: 49
23539196 GCATATCAAA
* *
23539206 GTCGATGCCATGTTCCAGACAGGTCTTACACTGACTTTCATATATAGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAG
* * * * *
23539255 GCCGATGTCGTGTCCCAGACAGGTCTTACACT-AGCTCTCATCTATCAG-T
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATAT-AGAG
* * * * * *
23539304 GTCGATGCCATGTCCCGGAAAGGTTTTACACTGA--CACACA-ACA-AG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAG
* *
23539349 CT-GACGCCATGTCCCAGACAGGTCTTACACT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACT
23539380 AGCTTGTATG
Statistics
Matches: 98, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
44 25 0.26
45 2 0.02
46 1 0.01
47 3 0.03
48 1 0.01
49 63 0.64
50 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATAGAG
Found at i:23539410 original size:48 final size:48
Alignment explanation
Indices: 23539356--23539478 Score: 201
Period size: 48 Copynumber: 2.6 Consensus size: 48
23539346 AAGCTGACGC
* * *
23539356 CATGTCCCAGACAGGTCTTACACTAGCTTGTATGTCTCAAGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
*
23539404 CATGTCCTAGACATGTCTTACACTGGCTTGTATATCTCAAGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
*
23539452 CATGTTCTAGACATGTCTTACACTAGC
1 CATGTCCTAGACATGTCTTACACTAGC
23539479 ACACATATCA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:23546769 original size:16 final size:17
Alignment explanation
Indices: 23546738--23546770 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23546728 TTGTTGCTGT
23546738 TGCAAATCCATCACCAC
1 TGCAAATCCATCACCAC
*
23546755 TGCAAA-CCTTCACCAC
1 TGCAAATCCATCACCAC
23546771 ACACATTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.33, C:0.42, G:0.06, T:0.18
Consensus pattern (17 bp):
TGCAAATCCATCACCAC
Found at i:23548998 original size:16 final size:17
Alignment explanation
Indices: 23548977--23549015 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
23548967 ATTGTAATGC
23548977 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
*
23548993 CCCAAAAATCCTGAAAT
1 CCCAAAAATCCCGAAAT
23549010 CCCAAA
1 CCCAAA
23549016 CTCTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.05, T:0.10
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:23550552 original size:29 final size:29
Alignment explanation
Indices: 23550519--23550595 Score: 111
Period size: 29 Copynumber: 2.7 Consensus size: 29
23550509 TGAATTTGAC
* *
23550519 TGGGCCAAACGGGCCATATAAATG-TGATT
1 TGGGCCTAATGGGCCATATAAA-GATGATT
*
23550548 TGGGCCTAATGGGCCATATACAGATGATT
1 TGGGCCTAATGGGCCATATAAAGATGATT
23550577 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
23550596 GAATATGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 1 0.02
29 43 0.98
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGATGATT
Found at i:23550603 original size:29 final size:29
Alignment explanation
Indices: 23550506--23550603 Score: 110
Period size: 29 Copynumber: 3.4 Consensus size: 29
23550496 GTGAGCATGA
* * * *
23550506 ATATGAATTTGA-CTGGGCCAAACGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* *
23550534 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
23550563 ATAT-ACAGATGATTTGGGCCTAATGGGCC
1 ATATGA-ATATGATTTGGGCCTAATGGGCC
23550592 ATATGAATATGA
1 ATATGAATATGA
23550604 ATGGGCTTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 11 0.19
29 47 0.80
30 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:23559948 original size:19 final size:20
Alignment explanation
Indices: 23559924--23559963 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
23559914 GCAAACATTA
*
23559924 TTTTTTATTTTAT-TTGAGT
1 TTTTTTATGTTATCTTGAGT
23559943 TTTTTTATGTTATCTTGAGT
1 TTTTTTATGTTATCTTGAGT
23559963 T
1 T
23559964 ATGGAATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.15, C:0.03, G:0.12, T:0.70
Consensus pattern (20 bp):
TTTTTTATGTTATCTTGAGT
Found at i:23578657 original size:31 final size:31
Alignment explanation
Indices: 23578614--23578790 Score: 311
Period size: 31 Copynumber: 5.7 Consensus size: 31
23578604 TTAGTCTTGA
* *
23578614 CATAT-ACTGGGCCAAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23578644 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23578675 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
23578706 CATATCACTAGGCCGGAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23578737 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23578768 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
23578791 ACTGTAAACG
Statistics
Matches: 140, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.04
31 135 0.96
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:23579024 original size:24 final size:24
Alignment explanation
Indices: 23578997--23579105 Score: 112
Period size: 25 Copynumber: 4.4 Consensus size: 24
23578987 TTGGAGGCCT
23578997 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
23579021 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** *
23579046 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
** *
23579071 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
23579096 AGCCCTTTTA
1 AGCCCTTTTA
23579106 GCACTTCCTC
Statistics
Matches: 78, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
23 1 0.01
24 14 0.18
25 63 0.81
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:23579044 original size:25 final size:25
Alignment explanation
Indices: 23579010--23579104 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
23579000 CTCTTTTAAT
* *
23579010 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
23579035 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
23579060 AACTGGGGCATAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
23579085 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23579105 AGCACTTCCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:23580064 original size:27 final size:27
Alignment explanation
Indices: 23580034--23580244 Score: 147
Period size: 27 Copynumber: 7.7 Consensus size: 27
23580024 AATCTACAAG
* *
23580034 CCAAGGGTATTTCAGTAATTTTGTAAA
1 CCAAGGGTATTTCGGTAATTTTATAAA
* ** *
23580061 CCAATGGTATTTCTATAATTTTTAGAAA
1 CCAAGGGTATTTCGGTAA-TTTTATAAA
* *
23580089 GTCAAGGGTATTTCTGTAATTTTATAAA
1 -CCAAGGGTATTTCGGTAATTTTATAAA
* * *
23580117 -TAAGGGGTATTTTGGTAATTTTACAAA
1 CCAA-GGGTATTTCGGTAATTTTATAAA
*** * *
23580144 TTGAGGGTATTTCGGTAATTTCACAAA
1 CCAAGGGTATTTCGGTAATTTTATAAA
* *
23580171 CCAATGGTATTTCGGTAATTTTACAAA
1 CCAAGGGTATTTCGGTAATTTTATAAA
* * * * *
23580198 CTAGGGGTATTTTGGTAGTTTTACAAA
1 CCAAGGGTATTTCGGTAATTTTATAAA
* *
23580225 -CTAGTGGTATTTTGGTAATT
1 CCAAG-GGTATTTCGGTAATT
23580245 CTATCCTACA
Statistics
Matches: 149, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 114 0.77
28 17 0.11
29 15 0.10
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CCAAGGGTATTTCGGTAATTTTATAAA
Found at i:23580180 original size:54 final size:53
Alignment explanation
Indices: 23580037--23580244 Score: 186
Period size: 54 Copynumber: 3.8 Consensus size: 53
23580027 CTACAAGCCA
* ** * * *
23580037 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA
1 AGGGTATTTCGGTAATTTTACAAACCAATGGTATTT-TGGTAA-TTTTACAAA-T-T
* * * *
23580093 AGGGTATTTCTGTAATTTTATAAA-TAAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAACCAA-TGGTATTTTGGTAATTTTACAAATT
* * *
23580146 GAGGGTATTTCGGTAATTTCACAAACCAATGGTATTTCGGTAATTTTACAAACT
1 -AGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTACAAATT
* * * *
23580200 AGGGGTATTTTGGTAGTTTTACAAACTAGTGGTATTTTGGTAATT
1 A-GGGTATTTCGGTAATTTTACAAACCAATGGTATTTTGGTAATT
23580245 CTATCCTACA
Statistics
Matches: 127, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
53 1 0.01
54 81 0.64
55 13 0.10
56 32 0.25
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTACAAATT
Found at i:23580211 original size:81 final size:81
Alignment explanation
Indices: 23580095--23580244 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
23580085 GAAAGTCAAG
* * *
23580095 GGTATTTCTGTAATTTTATAAATAAGGGGTATTTTGGTAATTTTACAAATTGAG-GGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATAAGGGGTATTTTGGTAATTTTACAAACT-AGTGGTATTTCGG
23580159 TAATTTCACAAACCAAT
65 TAATTTCACAAACCAAT
* *
23580176 GGTATTTCGGTAATTTTACAAACT-AGGGGTATTTTGGTAGTTTTACAAACTAGTGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAA-TAAGGGGTATTTTGGTAATTTTACAAACTAGTGGTATTTCGG
23580240 TAATT
65 TAATT
23580245 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 2 0.03
81 59 0.95
82 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATAAGGGGTATTTTGGTAATTTTACAAACTAGTGGTATTTCGGT
AATTTCACAAACCAAT
Found at i:23580258 original size:54 final size:54
Alignment explanation
Indices: 23580122--23580277 Score: 163
Period size: 54 Copynumber: 2.9 Consensus size: 54
23580112 ATAAATAAGG
* * *
23580122 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAAT
1 GGTATTTCGGTAATTCTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAAT
* * * * * *
23580176 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAGTTTTACAAACTAGT
1 GGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAAT
* ** *
23580230 GGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTCAGTAATTTCACAA
1 GGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTCGGTAATTTCACAA
23580278 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 80 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAAT
Found at i:23580351 original size:54 final size:54
Alignment explanation
Indices: 23580276--23580405 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
23580266 GTAATTTCAC
* * * *
23580276 AATCGAGGGTAAAATGATAATTTTGTAAA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATC-GAGGGTAAAACGATAATTCTATA
* * *
23580330 AATTGAGGGTAAAAGGGTAATTTTGTAAATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATA
23580384 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
23580406 CTACGAATCG
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGATAATTCTATA
Found at i:23580408 original size:27 final size:27
Alignment explanation
Indices: 23580276--23580405 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
23580266 GTAATTTCAC
* *
23580276 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
23580303 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
23580330 AATTGAGGGTAAAAGGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
23580357 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
23580384 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
23580406 CTACGAATCG
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 87 0.99
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:23582694 original size:31 final size:31
Alignment explanation
Indices: 23582657--23582763 Score: 169
Period size: 31 Copynumber: 3.5 Consensus size: 31
23582647 GACATATAAT
* *
23582657 GGGCCGAAGCCTTTCCATAAATCATACCACA
1 GGGCCGAAGCCTTTTCATAAATCATATCACA
*
23582688 CGGCCGAAGCCTTTTCATAAATCATATCACA
1 GGGCCGAAGCCTTTTCATAAATCATATCACA
*
23582719 GGGCCGAAGCCTTTTCATAAATCATATCACT
1 GGGCCGAAGCCTTTTCATAAATCATATCACA
*
23582750 GGGCTGAAGCCTTT
1 GGGCCGAAGCCTTT
23582764 ACTGTCAACG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (31 bp):
GGGCCGAAGCCTTTTCATAAATCATATCACA
Found at i:23583011 original size:25 final size:25
Alignment explanation
Indices: 23582983--23583052 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
23582973 CTCTTTTAAT
*
23582983 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
23583008 AACTGAGGG-AAAGCCCTTTTCGGTA
1 AACTG-GGGCAAAGCCCTTTTCGATA
*
23583033 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23583053 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.08
25 34 0.85
26 3 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:23583896 original size:27 final size:27
Alignment explanation
Indices: 23583861--23583916 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
23583851 GGGCATATTC
*
23583861 GTCATTTTACCATACAAGGG-TATTACG
1 GTCACTTTACCATACAAGGGCT-TTACG
* *
23583888 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAAGGGCTTTACG
23583915 GT
1 GT
23583917 TTTTTTACCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAAGGGCTTTACG
Found at i:23584008 original size:27 final size:27
Alignment explanation
Indices: 23583975--23584183 Score: 136
Period size: 27 Copynumber: 7.7 Consensus size: 27
23583965 TTGGTAAATC
23583975 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** *
23584002 TGTAAACCAACGGTATTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * **
23584030 TAGAAAGTCAAGGGTATTTTTGTAATTT
1 TACAAA-CCAAGGGTATTTCAGTAATTT
** * ** ** *
23584058 TGTAAATCGGGGGTATTTTGGTAGTTT
1 TACAAACCAAGGGTATTTCAGTAATTT
***
23584085 TACAAATTGAGGGTATTTCAGT-ATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*
23584111 TCACAAACC-AGTGGTATTTCGGTAATTT
1 T-ACAAACCAAG-GGTATTTCAGTAATTT
* **
23584139 TACAAACTAAGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
23584166 TACAAACTAGGGGTATTT
1 TACAAACCAAGGGTATTT
23584184 TGGTAATTAT
Statistics
Matches: 146, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 6 0.04
27 105 0.72
28 22 0.15
29 13 0.09
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:23584127 original size:54 final size:54
Alignment explanation
Indices: 23583964--23584191 Score: 190
Period size: 54 Copynumber: 4.2 Consensus size: 54
23583954 TACAAGGGTG
* * * ** **
23583964 TTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAACGGTAT
1 TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAAACCAGGGGTAT
* * * ** ** * *
23584018 TTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAATCGGGGGTAT
1 TT-TGGTAA-TTTTACAAACT-AAGGGTATTTCAGTAATTTTACAAACCAGGGGTAT
* * * *
23584074 TTTGGTAGTTTTACAAATTGAGGGTATTTCAGT-ATTTTCACAAACCAGTGGTAT
1 TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTT-ACAAACCAGGGGTAT
* ** *
23584128 TTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAAACCAGGGGTAT
23584182 TTTGGTAATT
1 TTTGGTAATT
23584192 ATATCCTATA
Statistics
Matches: 135, Mismatches: 33, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
53 5 0.04
54 75 0.56
55 22 0.16
56 33 0.24
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
TTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTTACAAACCAGGGGTAT
Found at i:23584184 original size:27 final size:26
Alignment explanation
Indices: 23584041--23584219 Score: 144
Period size: 27 Copynumber: 6.7 Consensus size: 26
23584031 AGAAAGTCAA
* ** *
23584041 GGGTATTTTTGTAATTTTGTAAATCGG
1 GGGTATTTTGGTAATTTTACAAAT-AG
* *
23584068 GGGTATTTTGGTAGTTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAATAG
** *
23584094 AGGGTATTTCAGT-ATTTTCACAAACCAG
1 -GGGTATTTTGGTAATTTT-ACAAA-TAG
* * *
23584122 TGGTATTTCGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAA-TAG
23584149 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAA-TAG
* **
23584176 GGGTATTTTGGTAATTATATCCTATAG
1 GGGTATTTTGGTAATTTTA-CAAATAG
*
23584203 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
23584220 CTCAATCGAG
Statistics
Matches: 125, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.04
27 112 0.90
28 8 0.06
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:23584257 original size:27 final size:27
Alignment explanation
Indices: 23584223--23584366 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
23584213 GTAATTTCTC
23584223 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
23584250 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
** *
23584277 AATTAAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* ** * *
23584304 AATCGAGGGTGAAACCGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* **
23584331 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
23584358 AATCGAGGG
1 AATCGAGGG
23584367 CATTTCAGTA
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.99
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:23587633 original size:55 final size:54
Alignment explanation
Indices: 23587538--23587687 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
23587528 CTACTTTGTT
* ** * *
23587538 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
23587592 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
23587647 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
23587688 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:23587650 original size:27 final size:27
Alignment explanation
Indices: 23587510--23587687 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
23587500 TAAATTGTAC
23587510 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
23587537 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
23587563 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
23587591 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
23587619 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
23587646 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
23587673 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23587688 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:23587651 original size:82 final size:81
Alignment explanation
Indices: 23587511--23587666 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
23587501 AAATTGTACA
* * * *
23587511 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
23587576 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
23587592 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
23587655 TGTGCGAGTTGA
63 TGTGCGAATTGA
23587667 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:23603254 original size:55 final size:54
Alignment explanation
Indices: 23603159--23603308 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
23603149 CTACTTTGTT
* ** * *
23603159 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
23603213 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
23603268 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
23603309 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:23603271 original size:27 final size:27
Alignment explanation
Indices: 23603131--23603308 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
23603121 TAAATTGTAC
23603131 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
23603158 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
23603184 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
23603212 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
23603240 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
23603267 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
23603294 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23603309 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:23603272 original size:82 final size:81
Alignment explanation
Indices: 23603132--23603287 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
23603122 AAATTGTACA
* * * *
23603132 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
23603197 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
23603213 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
23603276 TGTGCGAGTTGA
63 TGTGCGAATTGA
23603288 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:23605712 original size:24 final size:24
Alignment explanation
Indices: 23605685--23605768 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
23605675 CTGGAGGCCT
*
23605685 AGCCTCTTTTAAT-AATTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
23605709 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
* * *
23605734 AGCCCTTTTCAGTAAACTAGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
23605759 AGCCCTTTTA
1 AGCCCTTTTA
23605769 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 15 0.29
25 35 0.69
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:23605735 original size:25 final size:26
Alignment explanation
Indices: 23605701--23605767 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 26
23605691 TTTTAATAAT
*
23605701 TGGGGCAAAGCCCTTTTTGA-TAAAC
1 TGGGGCAAAGCCCTTTTTCAGTAAAC
23605726 TGGGGCAAAGCCC-TTTTCAGTAAAC
1 TGGGGCAAAGCCCTTTTTCAGTAAAC
* *
23605751 TAGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
23605768 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.14
25 29 0.78
26 3 0.08
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
TGGGGCAAAGCCCTTTTTCAGTAAAC
Found at i:23606639 original size:27 final size:27
Alignment explanation
Indices: 23606577--23606641 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
23606567 GAGCATATTC
23606577 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCATACAAGGGTATTACG
* * *
23606604 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAAGGG-TATTACG
*
23606631 GTCTTTTTACC
1 GTCATTTTACC
23606642 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGTATTACG
Found at i:23606792 original size:27 final size:27
Alignment explanation
Indices: 23606698--23606827 Score: 95
Period size: 27 Copynumber: 4.7 Consensus size: 27
23606688 ATCTACAAAC
*
23606698 CAAGGGTATTTCAGTAATTTTGTAAA-
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* * *
23606724 CTAATGATATTTCTATAATTTT-TAGAAAGT
1 C-AAGGGTATTTCTGTAATTTTGT--AAA-T
*
23606754 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCTGTAATTTTGTAAAT
* **
23606781 CAAGGGTATTT-TGGAAGTTTTACAAAT
1 CAAGGGTATTTCTGTAA-TTTTGTAAAT
** *
23606808 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCTGTAATTT
23606828 CACAAACCAG
Statistics
Matches: 81, Mismatches: 15, Indels: 15
0.73 0.14 0.14
Matches are distributed among these distances:
26 6 0.07
27 48 0.59
28 9 0.11
29 16 0.20
30 2 0.02
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTCTGTAATTTTGTAAAT
Found at i:23606900 original size:27 final size:27
Alignment explanation
Indices: 23606757--23606934 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
23606747 AGAAAGTCAA
* ** *
23606757 GGGTATTTTTGTAATTTTGTAAA-TCAA
1 GGGTATTTTGGTAATTTTACAAACT-AG
*
23606784 GGGTATTTTGG-AAGTTTTACAAA-TTG
1 GGGTATTTTGGTAA-TTTTACAAACTAG
** * *
23606810 AGGGTATTTCAGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
23606838 TGGTATTTCGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
23606865 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
23606892 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
*
23606919 GGGTATTTTAGTAATT
1 GGGTATTTTGGTAATT
23606935 CACAATCGAG
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 2 0.02
27 116 0.94
28 6 0.05
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:23607070 original size:27 final size:27
Alignment explanation
Indices: 23606938--23607067 Score: 140
Period size: 27 Copynumber: 4.8 Consensus size: 27
23606928 AGTAATTCAC
* *
23606938 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCTAGGGTAAAATGGTAATTTTGTA
23606965 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCT-AGGGTAAAATGGTAATTTTGTA
23606992 AAT-TAAGGGTAAAACT-GTAATTTTGTA
1 AATCT-AGGGTAAAA-TGGTAATTTTGTA
* * ** * *
23607019 AATCGAGGGTGAAACAGTAATTCTATA
1 AATCTAGGGTAAAATGGTAATTTTGTA
23607046 AATCTAGGGTAAAATGGTAATT
1 AATCTAGGGTAAAATGGTAATT
23607068 CTACAAATCA
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.01
27 84 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.23, T:0.32
Consensus pattern (27 bp):
AATCTAGGGTAAAATGGTAATTTTGTA
Found at i:23608919 original size:101 final size:98
Alignment explanation
Indices: 23608740--23608919 Score: 306
Period size: 101 Copynumber: 1.8 Consensus size: 98
23608730 ACTAGTGACT
*
23608740 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTGACAAGTGTGGTACTATG
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCACAAGTGTGGTACTATG
23608805 TGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
66 TGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
*
23608838 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGTGTGGTACT
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG--AGATAGC-TTGGTCACAAGTGTGGTACT
*
23608903 ATGTGAAGGCTACTTTG
63 ATGTGAAGGCCACTTTG
23608920 TAAATAAGGT
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
98 34 0.45
100 7 0.09
101 35 0.46
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (98 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCACAAGTGTGGTACTATG
TGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
Found at i:23608920 original size:52 final size:49
Alignment explanation
Indices: 23608740--23608919 Score: 306
Period size: 49 Copynumber: 3.6 Consensus size: 49
23608730 ACTAGTGACT
*
23608740 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTGA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
23608789 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
*
23608838 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG--AGATAGC-TTGGTCA
*
23608890 CAAGTGTGGTACTATGTGAAGGCTACTTTG
1 CAAGTGTGGTACTATGTGAAGGCCACTTTG
23608920 TAAATAAGGT
Statistics
Matches: 125, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
49 82 0.66
51 7 0.06
52 36 0.29
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.28
Consensus pattern (49 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTTGGTCA
Found at i:23608954 original size:51 final size:49
Alignment explanation
Indices: 23608735--23608966 Score: 268
Period size: 49 Copynumber: 4.6 Consensus size: 49
23608725 ATGTCACTAG
* *
23608735 TGACTCAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTT
1 TGACACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAAAGATAGCTT
* ** *
23608784 GGTGACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAGAGATAGCTT
1 TGACACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAAAGATAGCTT
* * *
23608833 GGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTT
1 TGACACAAGTGTGGTACTATGTGAAGGCCACTTTGAG-A-AAAGATAGCTT
* * *
23608884 TGGTCACAAGTGTGGTACTATGTGAAGGCTACTTTGTA-AATAAGGTAGCTT
1 T-GACACAAGTGTGGTACTATGTGAAGGCCACTTTG-AGAA-AAGATAGCTT
* * *
23608935 TGACTATAAGGGTGGTACTATGTGCAGGCCAC
1 TGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
23608967 CGGGTATCCG
Statistics
Matches: 161, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
49 80 0.50
50 4 0.02
51 44 0.27
52 33 0.20
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (49 bp):
TGACACAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAAAGATAGCTT
Found at i:23614020 original size:29 final size:29
Alignment explanation
Indices: 23613953--23614041 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
23613943 ACATACATGT
*
23613953 ATATGGCCCACTAGGCCC-AAT-ATCATTC
1 ATATGGCCCATTAGGCCCAAATCA-CATTC
*
23613981 ATATGCCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
23614010 GTATGGACCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
23614039 ATA
1 ATA
23614042 GTCATGCTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
28 16 0.30
29 36 0.68
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:23616348 original size:245 final size:245
Alignment explanation
Indices: 23615918--23616405 Score: 692
Period size: 245 Copynumber: 2.0 Consensus size: 245
23615908 CACATTTATG
* * * * *
23615918 GGCTTGGCTAATTCCTTAAAATGGAGAGGAAAGAGTCTGCCCCATTTAGGTCCCTCAACTACTGT
1 GGCTTGGCCAATTCATTAAAATGGAGAGGAAAGAGCCTACCCCATTTAGGTCCCTCAACTACTAT
* * * *
23615983 CTTCCCTGACGCTAGCTCTTGCACAACATAACCATAAGAAGAAAAGGTAACTTTGCAATTATCAT
66 CTTCCCTGACGCCAGCTCCTGCACAACACAACCAGAAGAAGAAAAGGTAACTTTGCAATTATCAT
* *
23616048 TTACCAGTTGTCCAATGGAAAGTAGATTAGCAAATAAACTAGGGGCAATGAAGACATTTTTCATA
131 CTACCAGTTGTCCAATGGAAAGTAGATTAGCAAATAAACTAAGGGCAATGAAGACATTTTTCATA
* * *
23616113 GATGGAGAA-GAAGAAATATCACCAATAGCAATAATTGGAATACGATTAAA
196 GATGGA-AATGAAGAAATATAAACAATAGCAATAATTGGAATACAATTAAA
* *
23616163 GGCTTGGCCGATTCATTGAAATGGAGAGGAAAGAGCCTACCCCATTTAGGTCCCTCAACTACTAT
1 GGCTTGGCCAATTCATTAAAATGGAGAGGAAAGAGCCTACCCCATTTAGGTCCCTCAACTACTAT
** * * * *
23616228 CTTCCCTGATTCCAGTTCCTGCATAACACAACCAGAAGAATAAAAGGTAACTTTGCAATTATCCT
66 CTTCCCTGACGCCAGCTCCTGCACAACACAACCAGAAGAAGAAAAGGTAACTTTGCAATTATCAT
* ***
23616293 CTACTAGTTGTCCAATGGAAAGTAGATTAGTTGATAAA-TCAAGGGCAATGAAGACATTTTTCAT
131 CTACCAGTTGTCCAATGGAAAGTAGATTAGCAAATAAACT-AAGGGCAATGAAGACATTTTTCAT
* *
23616357 AGATGGAAATGAAGAAATATAAACGATAGTAATAATTGGAATACAATTA
195 AGATGGAAATGAAGAAATATAAACAATAGCAATAATTGGAATACAATTA
23616406 CTACTAGCAG
Statistics
Matches: 213, Mismatches: 28, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
244 3 0.01
245 210 0.99
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (245 bp):
GGCTTGGCCAATTCATTAAAATGGAGAGGAAAGAGCCTACCCCATTTAGGTCCCTCAACTACTAT
CTTCCCTGACGCCAGCTCCTGCACAACACAACCAGAAGAAGAAAAGGTAACTTTGCAATTATCAT
CTACCAGTTGTCCAATGGAAAGTAGATTAGCAAATAAACTAAGGGCAATGAAGACATTTTTCATA
GATGGAAATGAAGAAATATAAACAATAGCAATAATTGGAATACAATTAAA
Found at i:23619115 original size:48 final size:47
Alignment explanation
Indices: 23619011--23619378 Score: 287
Period size: 46 Copynumber: 7.8 Consensus size: 47
23619001 TTATTTATGT
* *
23619011 GCTAGTGTAAGACATGTCTGGGACAT-GTATCGGCCA-C-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-CATCGA-GATGAGA
* * *
23619057 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATCGAGATGAGA
* *
23619105 GCTAGTGTAAGACATGTCTGGGACAT-ACATCGGCCTCGAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATG-AGA
* * *
23619151 GCCAGTGTAAGACATGTCTGGGACAT-GTATCGGC-TACGAGATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCAT-CGAGATGAGA
* *
23619196 TC-AGTGTAAGACTATGTCTGGGACATGGCATCGGCAT--ATAT-AGA
1 GCTAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCATCGAGATGAGA
* * * *
23619240 GGTGTCAGTGTAAGATCATGTCTAGGACATGGCATCCGCA-CGGATATGTGAGA
1 -G-CT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCATC-GAGA--TGAGA
* * ** *
23619293 GCTAGTGTAAGAACATGTCTGGGACATGGCGTCGGCCTCGATTTCGATA
1 GCTAGTGTAAG-ACATGTCTGGGACATGGCATCGGCATCGAGAT-GAGA
*
23619342 G-TCAGTGTAAGACCATGTCTGGTACATGGCATCGGCA
1 GCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
23619379 CTATGCCCTA
Statistics
Matches: 263, Mismatches: 32, Indels: 51
0.76 0.09 0.15
Matches are distributed among these distances:
43 1 0.00
44 13 0.05
45 15 0.06
46 70 0.27
47 32 0.12
48 55 0.21
49 35 0.13
50 34 0.13
51 3 0.01
52 2 0.01
53 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCATCGAGATGAGA
Found at i:23619314 original size:98 final size:98
Alignment explanation
Indices: 23619011--23619379 Score: 271
Period size: 94 Copynumber: 3.9 Consensus size: 98
23619001 TTATTTATGT
* *
23619011 GCTAGTGTAAGAC-ATGTCTGGGACAT-GTATCGGCCA-CAT-TATGAGAG-CTAGTGTAAGACC
1 GCTAGTGTAAGACTATGTCTGGGACATGGCATCGG-CATCATATA-GATAGTC-AGTGTAAGACC
* ** * *
23619071 ATGTCTGGGACATGGCAT-CGACATTGAGA--CGAGA
63 ATGTCTGGTACATGGCATCCG-CACGGATATGTGAGA
* * * *
23619105 GCTAGTGTAAGAC-ATGTCTGGGACAT-ACATCGGCCTCGAGAT-G-TAAGCCAGTGTAAGA-CA
1 GCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCATC-ATATAGAT-AGTCAGTGTAAGACCA
* * * *
23619165 TGTCTGGGACAT-GTATCGGCTAC-GAGATGT--G-
64 TGTCTGGTACATGGCATCCGC-ACGGATATGTGAGA
* *
23619196 TC-AGTGTAAGACTATGTCTGGGACATGGCATCGGCAT-ATATAGAGGT-GTCAGTGTAAGATCA
1 GCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCATCATATAGA--TAGTCAGTGTAAGACCA
23619258 TGTCTAGG-ACATGGCATCCGCACGGATATGTGAGA
64 TGTCT-GGTACATGGCATCCGCACGGATATGTGAGA
* * * *
23619293 GCTAGTGTAAGAAC-ATGTCTGGGACATGGCGTCGGCCTCGATTTCGATAGTCAGTGTAAGACCA
1 GCTAGTGTAAG-ACTATGTCTGGGACATGGCATCGGCATC-ATATAGATAGTCAGTGTAAGACCA
*
23619357 TGTCTGGTACATGGCATCGGCAC
64 TGTCTGGTACATGGCATCCGCAC
23619380 TATGCCCTAT
Statistics
Matches: 223, Mismatches: 24, Indels: 51
0.75 0.08 0.17
Matches are distributed among these distances:
90 13 0.06
91 15 0.07
92 28 0.13
93 30 0.13
94 59 0.26
95 2 0.01
96 2 0.01
97 1 0.00
98 33 0.15
99 35 0.16
100 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (98 bp):
GCTAGTGTAAGACTATGTCTGGGACATGGCATCGGCATCATATAGATAGTCAGTGTAAGACCATG
TCTGGTACATGGCATCCGCACGGATATGTGAGA
Found at i:23624625 original size:155 final size:155
Alignment explanation
Indices: 23624343--23624659 Score: 508
Period size: 155 Copynumber: 2.0 Consensus size: 155
23624333 CTTATTAAAT
* * *
23624343 TCTGGTTCTGGCTCAACCAACTCTATTCATCACAAGTCTCGGCTTCCCATGGTGGTCGCCCCAGA
1 TCTGGTTCTGGCTCAACCAACTCTATTCATCACAAGTCTCGACTTCCCATGGTGGTAGCCCCAAA
* * *
23624408 TACTGTCAATTCCCCAATTTTCAACCGGTCATCTCTTCTCCCGTTGCCTAGTCACTCCATCCTTT
66 TACTGTCAATTCCCCAATTTTCAACCAGTCATCTCTTCTCCCATTGCCGAGTCACTCCATCCTTT
**
23624473 TAGCCTACGGTCTCCTACTCACTGA
131 TAGCCTACGGTCTCCTACTCACCAA
*
23624498 TCTGGTTCTGGCTCAACCAACTCTATTCATCACAAGTCTCGACTTGCCATGGTGGTAGCCCCAAA
1 TCTGGTTCTGGCTCAACCAACTCTATTCATCACAAGTCTCGACTTCCCATGGTGGTAGCCCCAAA
* *
23624563 TATTGTCAATTCCCCAATTTTCAACCAGTCATCTCTTCTCCCATTGCCGAGTCGCTCCATCCTTT
66 TACTGTCAATTCCCCAATTTTCAACCAGTCATCTCTTCTCCCATTGCCGAGTCACTCCATCCTTT
* * *
23624628 TGGTCTATGGTCTCCTACTCACCAA
131 TAGCCTACGGTCTCCTACTCACCAA
23624653 TCTGGTT
1 TCTGGTT
23624660 TCTCATCTTC
Statistics
Matches: 148, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
155 148 1.00
ACGTcount: A:0.19, C:0.34, G:0.15, T:0.32
Consensus pattern (155 bp):
TCTGGTTCTGGCTCAACCAACTCTATTCATCACAAGTCTCGACTTCCCATGGTGGTAGCCCCAAA
TACTGTCAATTCCCCAATTTTCAACCAGTCATCTCTTCTCCCATTGCCGAGTCACTCCATCCTTT
TAGCCTACGGTCTCCTACTCACCAA
Found at i:23627274 original size:43 final size:42
Alignment explanation
Indices: 23627181--23627296 Score: 153
Period size: 43 Copynumber: 2.7 Consensus size: 42
23627171 GAAGTCTGAA
*
23627181 CTCATTGAGTGGTCCGAGTTCGTGA-GGTATGTAGCATCCGAG
1 CTCATTGAGTGGTCCGAGTTCATGATGG-ATGTAGCATCCGAG
* * * *
23627223 CTCGTTGAGAGGTCCAAGTTCATTATGGATGTGAGCATCCGAG
1 CTCATTGAGTGGTCCGAGTTCATGATGGATGT-AGCATCCGAG
*
23627266 CTCATTGAGTGGTTCGAGTTCATGATGGATG
1 CTCATTGAGTGGTCCGAGTTCATGATGGATG
23627297 CGATTCATGT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 24 0.39
43 38 0.61
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (42 bp):
CTCATTGAGTGGTCCGAGTTCATGATGGATGTAGCATCCGAG
Found at i:23628670 original size:28 final size:28
Alignment explanation
Indices: 23628638--23628693 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
23628628 ACATGGGCGA
23628638 GGACACAG-GTGTGTCTAGGCCGTGTGAG
1 GGACACAGAGTGTG-CTAGGCCGTGTGAG
*
23628666 GGACACAGACGTGTGCTCGGCCGTGTGA
1 GGACACAGA-GTGTGCTAGGCCGTGTGA
23628694 AAATCCCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 12 0.48
30 5 0.20
ACGTcount: A:0.18, C:0.21, G:0.41, T:0.20
Consensus pattern (28 bp):
GGACACAGAGTGTGCTAGGCCGTGTGAG
Found at i:23636963 original size:38 final size:38
Alignment explanation
Indices: 23636898--23637071 Score: 222
Period size: 38 Copynumber: 4.5 Consensus size: 38
23636888 GGCTTAAAGA
** * * *
23636898 CCCGCAGGCTTTATGTTGGAATTATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* *
23636936 CCTGCAGACTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
23636974 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* * * *
23637012 CCCGCAGGCCTAGTGCTGGTATTATATCTGAGCTTAAAGT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
*
23637052 CCCGTAGGCTTCGTGCTGGT
1 CCCGCAGGCTTCGTGCTGGT
23637072 GTTGTGTTCG
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 94 0.80
39 6 0.05
40 18 0.15
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.33
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:23638810 original size:29 final size:28
Alignment explanation
Indices: 23638778--23638852 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
23638768 TTTTAACCGA
*
23638778 GCACTATGTGTGCGAAATCGGTAATTGAG
1 GCACTATGTGTGCGAAATCGGTAAGTG-G
* * *
23638807 GCACTGTGTGTGCGAGATCGGTCAGTGG
1 GCACTATGTGTGCGAAATCGGTAAGTGG
* *
23638835 GCACTAAGTGTGTGAAAT
1 GCACTATGTGTGCGAAAT
23638853 GAGATTCATG
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 15 0.39
29 23 0.61
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAAATCGGTAAGTGG
Found at i:23639734 original size:42 final size:42
Alignment explanation
Indices: 23639675--23639759 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
23639665 GGGTTATGAA
*
23639675 TATGTGAGTTGATGTTATGTATTATATATGTTAATATGTGAT
1 TATGTGAGTTGATGTTATGTATTATACATGTTAATATGTGAT
23639717 TATGTGAGTTGATGTTATGTATTATACATGTTAATATGTGAT
1 TATGTGAGTTGATGTTATGTATTATACATGTTAATATGTGAT
23639759 T
1 T
23639760 TATATGTGTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.01, G:0.21, T:0.49
Consensus pattern (42 bp):
TATGTGAGTTGATGTTATGTATTATACATGTTAATATGTGAT
Found at i:23644248 original size:85 final size:83
Alignment explanation
Indices: 23644133--23644312 Score: 288
Period size: 85 Copynumber: 2.1 Consensus size: 83
23644123 GTAAAGACGT
*
23644133 CAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTTCC
1 CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTTCC
23644198 TTGTAAGCACAAGGATGC
66 TTGTAAGCACAAGGATGC
* * * *
23644216 CTAAACCATCTTGAGTCATGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGATTTGTT
1 C-AAACCATCTTGAGTC-TGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTT
*
23644281 CCTTGTAAGCACAAGGATGT
64 CCTTGTAAGCACAAGGATGC
23644301 CAAACCATCTTG
1 CAAACCATCTTG
23644313 GATCTGCTTC
Statistics
Matches: 89, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
83 1 0.01
84 25 0.28
85 63 0.71
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (83 bp):
CAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGACTTGTTCC
TTGTAAGCACAAGGATGC
Found at i:23644832 original size:119 final size:119
Alignment explanation
Indices: 23644236--23644829 Score: 954
Period size: 119 Copynumber: 5.0 Consensus size: 119
23644226 TTGAGTCATG
* * * * * * *
23644236 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTTGATTTGTTCCTTGTAAGCACAAGGATGT
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
* * *
23644301 CAAACCATCTTGGATCTGCTTCAGTATAAACATTTGAAGCTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * * * * *
23644355 TTTGAAAACGTCTGAGAGTCAAATCTGCTATGACCTCGATTTGTTTCTTGTAAACATAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
* * *
23644420 CAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAAATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
23644474 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
*
23644539 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
23644593 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
*
23644658 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
*
23644712 TTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
*
23644777 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTAT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTAT
23644830 CTTCGATCTG
Statistics
Matches: 440, Mismatches: 35, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 440 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTTGATTTGTTCCTTGTAAACACAAGAATGC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:23644872 original size:44 final size:44
Alignment explanation
Indices: 23644821--23645000 Score: 186
Period size: 44 Copynumber: 4.1 Consensus size: 44
23644811 TGAAGGTCAG
*
23644821 ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* *
23644865 ATTTGCTATCTT-GAACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
23644907 ATGCTGAAATCTTCAATCTGTTTCGCTATAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
23644953 ATCTACTATCTTTGATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
23644997 ATCT
1 ATCT
23645001 TGTTTCTTTG
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 79 0.74
45 12 0.11
46 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:23644937 original size:88 final size:87
Alignment explanation
Indices: 23644828--23644995 Score: 212
Period size: 88 Copynumber: 1.9 Consensus size: 87
23644818 CAGATCTGCT
* * * * *
23644828 ATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAAATTTGCTATC-TTGAACTTGTTCCCTAT
1 ATCTTCAATCTGTTCCCTATAAACACAGGAATGCCAAATCTACTATCTTTGAAC-TGTTCCCTAT
23644892 AAACACAGGGATGCCATGCTGAA
65 AAACACAGGGATGCCATGCTGAA
* * * * *
23644915 ATCTTCAATCTGTTTCGCTATAAGCACAGGAATGTCAGATCTACTATCTTTGATCTGTTCCCTAT
1 ATCTTCAATCTG-TTCCCTATAAACACAGGAATGCCAAATCTACTATCTTTGAACTGTTCCCTAT
*
23644980 AAACATAGGGATGCCA
65 AAACACAGGGATGCCA
23644996 AATCTTGTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
87 11 0.16
88 52 0.76
89 5 0.07
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (87 bp):
ATCTTCAATCTGTTCCCTATAAACACAGGAATGCCAAATCTACTATCTTTGAACTGTTCCCTATA
AACACAGGGATGCCATGCTGAA
Found at i:23645896 original size:14 final size:14
Alignment explanation
Indices: 23645873--23645922 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
23645863 CTCTCCATTT
23645873 TTTA-TTTTTTCTC
1 TTTATTTTTTTCTC
23645886 TTTATTTTTTTCTC
1 TTTATTTTTTTCTC
23645900 TTT-TTCTTTTT-T-
1 TTTATT-TTTTTCTC
*
23645912 TTTCTTTTTTT
1 TTTATTTTTTT
23645923 TTAAAATAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 8 0.24
13 9 0.26
14 17 0.50
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTATTTTTTTCTC
Found at i:23645909 original size:16 final size:15
Alignment explanation
Indices: 23645870--23645924 Score: 67
Period size: 16 Copynumber: 3.6 Consensus size: 15
23645860 GGCCTCTCCA
23645870 TTTTTTATTTTTTCTC
1 TTTTTT-TTTTTTCTC
*
23645886 -TTTATTTTTTTCTC
1 TTTTTTTTTTTTCTC
*
23645900 TTTTTCTTTTTTTTTC
1 TTTTT-TTTTTTTCTC
23645916 TTTTTTTTT
1 TTTTTTTTT
23645925 AAAATAGAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 9 0.26
15 11 0.32
16 14 0.41
ACGTcount: A:0.04, C:0.11, G:0.00, T:0.85
Consensus pattern (15 bp):
TTTTTTTTTTTTCTC
Found at i:23647404 original size:10 final size:10
Alignment explanation
Indices: 23647389--23647413 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23647379 ATATATAATC
23647389 TTTTTTATTT
1 TTTTTTATTT
23647399 TTTTTTATTT
1 TTTTTTATTT
23647409 TTTTT
1 TTTTT
23647414 GAAATAGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:23648591 original size:15 final size:14
Alignment explanation
Indices: 23648564--23648591 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23648554 TCGACTTAAT
23648564 TTTATTTAGAAAAA
1 TTTATTTAGAAAAA
23648578 TTTATTTAGAAAAA
1 TTTATTTAGAAAAA
23648592 GAATATCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (14 bp):
TTTATTTAGAAAAA
Found at i:23655968 original size:38 final size:38
Alignment explanation
Indices: 23655907--23656026 Score: 125
Period size: 38 Copynumber: 3.1 Consensus size: 38
23655897 ATTTGATGTG
* * *
23655907 TATCCGGGCTTAAAGACCCGCAGGCTTTATGCTGGAATTC
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCATGCTGGAATTA
* *
23655947 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
* * * *
23655985 TATCCGGGTAAAATCCCACAGGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
23656023 TATC
1 TATC
23656027 TAAGTTTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
38 57 0.81
39 5 0.07
40 8 0.11
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:23656055 original size:40 final size:38
Alignment explanation
Indices: 23655927--23656058 Score: 120
Period size: 38 Copynumber: 3.4 Consensus size: 38
23655917 TAAAGACCCG
** * * * * *
23655927 CAGGCTTTATGCTGGAATTCTATCCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCAGGGTAAAATCCCA
*
23655965 CAGGCTTCGTGCTGGTATTATATCCGGGTAAAATCCCA
1 CAGGCTTCGTGCTGGTATTATATCAGGGTAAAATCCCA
* * ** *
23656003 CAGGCCTAGTGCTGGTATTATATCTAAGTTTAAAGTCCCA
1 CAGGCTTCGTGCTGGTATTATATC--AGGGTAAAATCCCA
*
23656043 TAGGCTTCGTGCTGGT
1 CAGGCTTCGTGCTGGT
23656059 GTTGTGTTCG
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 54 0.70
40 23 0.30
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTATTATATCAGGGTAAAATCCCA
Found at i:23674710 original size:13 final size:13
Alignment explanation
Indices: 23674692--23674716 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23674682 GCACTTTTTA
23674692 CAATATAAAATTC
1 CAATATAAAATTC
23674705 CAATATAAAATT
1 CAATATAAAATT
23674717 AACTCAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (13 bp):
CAATATAAAATTC
Found at i:23677210 original size:21 final size:22
Alignment explanation
Indices: 23677186--23677227 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
23677176 ATTATGATAC
*
23677186 TAACATAGACATATAC-AAATA
1 TAACATAAACATATACTAAATA
*
23677207 TAACATAAACATTTACTAAAT
1 TAACATAAACATATACTAAAT
23677228 CAGGCATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (22 bp):
TAACATAAACATATACTAAATA
Found at i:23685761 original size:24 final size:24
Alignment explanation
Indices: 23685715--23685763 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23685705 TCTTTACCTG
* *
23685715 CTGACACCAGTGTCACCAGATAGC
1 CTGACACCAGTGCCACCAAATAGC
* *
23685739 CTGACACTAGTGCCGCCAAATAGC
1 CTGACACCAGTGCCACCAAATAGC
23685763 C
1 C
23685764 CGATATAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.35, G:0.20, T:0.16
Consensus pattern (24 bp):
CTGACACCAGTGCCACCAAATAGC
Found at i:23692631 original size:120 final size:120
Alignment explanation
Indices: 23692399--23692657 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 120
23692389 TTGAATGATG
* * *
23692399 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
**
23692464 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
23692519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
23692582 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
23692639 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
23692658 TACGGGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 91 0.76
121 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:23692638 original size:40 final size:40
Alignment explanation
Indices: 23692399--23692624 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
23692389 TTGAATGATG
* * * *
23692399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* *
23692439 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23692479 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23692519 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23692559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23692600 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23692625 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 160 0.94
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23694723 original size:15 final size:15
Alignment explanation
Indices: 23694703--23694747 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
23694693 TTCATTTGTT
23694703 TATTATTATTTTTTC
1 TATTATTATTTTTTC
23694718 TATTATTATTTTTT-
1 TATTATTATTTTTTC
23694732 TATT-TTACTTTTTTC
1 TATTATTA-TTTTTTC
23694747 T
1 T
23694748 TATTCTCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.11
14 10 0.36
15 15 0.54
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTATTATTTTTTC
Found at i:23696461 original size:6 final size:6
Alignment explanation
Indices: 23696450--23696494 Score: 72
Period size: 6 Copynumber: 7.2 Consensus size: 6
23696440 TCCATCTATC
23696450 TTTATT TTTATT TTTATT TTTATT TTTATT TTTCATT TTGTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTT-ATT TT-TATT T
23696495 ATTTTTCTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
6 27 0.73
7 9 0.24
8 1 0.03
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:23696495 original size:18 final size:18
Alignment explanation
Indices: 23696450--23696501 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 18
23696440 TCCATCTATC
23696450 TTTATTTTTATTTTT-ATT
1 TTTA-TTTTATTTTTCATT
23696468 TTTATTTTTATTTTTCATT
1 TTTA-TTTTATTTTTCATT
23696487 TTGTA-TTTATTTTTC
1 TT-TATTTTATTTTTC
23696502 TTCATATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 25 0.78
19 5 0.16
20 2 0.06
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTATTTTATTTTTCATT
Found at i:23705555 original size:3 final size:3
Alignment explanation
Indices: 23705547--23705588 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
23705537 TATACTTTAA
23705547 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
23705589 TAAAAAACAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23715865 original size:13 final size:13
Alignment explanation
Indices: 23715849--23715879 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
23715839 GCACATGGGT
23715849 GTGTCACACGGGC
1 GTGTCACACGGGC
23715862 GTGTCACACGGGC
1 GTGTCACACGGGC
23715875 GTGTC
1 GTGTC
23715880 CCTGCCGAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.29, G:0.39, T:0.19
Consensus pattern (13 bp):
GTGTCACACGGGC
Found at i:23719180 original size:27 final size:27
Alignment explanation
Indices: 23719150--23719327 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
23719140 ATATTGAGCC
* *
23719150 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
23719177 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
23719204 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
23719232 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
23719259 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
23719286 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
23719313 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23719328 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:23719262 original size:55 final size:54
Alignment explanation
Indices: 23719150--23719327 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
23719140 ATATTGAGCC
* * * * *
23719150 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
23719204 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
23719259 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
23719313 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23719328 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:23732519 original size:27 final size:26
Alignment explanation
Indices: 23732478--23732618 Score: 156
Period size: 27 Copynumber: 5.2 Consensus size: 26
23732468 AGGAAGCGTC
*
23732478 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
23732505 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
23732532 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* **
23732559 CTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
23732586 CTGGTGGCTCTGCTACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
23732613 CTGGTG
1 CTGGTG
23732619 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
26 8 0.08
27 85 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:23732560 original size:54 final size:54
Alignment explanation
Indices: 23732478--23732614 Score: 204
Period size: 54 Copynumber: 2.5 Consensus size: 54
23732468 AGGAAGCGTC
23732478 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
* * * *
23732532 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
* *
23732586 CTGGTGGCTCTGCTACAA-TATCTGTATCT
1 CTGGTGGCTATGCCACAATTATCTG-ATCT
23732615 GGTGACTTCG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
53 6 0.08
54 69 0.92
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
Found at i:23737446 original size:41 final size:42
Alignment explanation
Indices: 23737390--23737513 Score: 214
Period size: 41 Copynumber: 3.0 Consensus size: 42
23737380 CGTGGCTTCA
23737390 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
* *
23737432 ATTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTCG
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
*
23737473 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTT
1 ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTT
23737514 TAGCTACTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
41 39 0.51
42 37 0.49
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (42 bp):
ATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTAGCTTTG
Found at i:23737496 original size:42 final size:42
Alignment explanation
Indices: 23737384--23737512 Score: 215
Period size: 42 Copynumber: 3.1 Consensus size: 42
23737374 AAGACACGTG
*
23737384 GCTTCAATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTA
1 GCTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTA
* *
23737426 GCTTTGATTAA-TCCACTGAAACTTCAAGGAGATCTGCTGTA
1 GCTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTA
*
23737467 GCTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTG
1 GCTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTA
23737509 GCTT
1 GCTT
23737513 TTAGCTACTC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.49
42 41 0.51
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (42 bp):
GCTTCGATCAATTCCACTGAAACTTCAAGGAGATCTGCTGTA
Found at i:23737662 original size:42 final size:44
Alignment explanation
Indices: 23737555--23737674 Score: 138
Period size: 42 Copynumber: 2.8 Consensus size: 44
23737545 TATTTGATTT
* * *
23737555 TCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCA
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
** * * *
23737599 TTGATCTGTTTCCCTACTGCTTAGGGGTTT-A-GATCTGTAAAC-
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCT-TGTAAACA
23737641 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
1 TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG
23737675 TTTGAAAATT
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.46
43 7 0.11
44 26 0.43
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAACA
Found at i:23737726 original size:86 final size:86
Alignment explanation
Indices: 23737554--23737765 Score: 232
Period size: 86 Copynumber: 2.5 Consensus size: 86
23737544 ATATTTGATT
** *
23737554 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTCATCATTGATCTGTTTCCCTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAAT-ATTGATCTGTTACCCTACTGC
** * *
23737619 TTAGGGGTTTAGATCTGTAAAC
65 TTAGGGAATAAGATCTATAAAC
* * * *
23737641 -TCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAA-ATTTG-GCTTGTTACCCTATTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATA-TTGATC-TGTTACCCTACTG
*
23737703 CTTAGGGCAATAATATCTATAAAC
64 CTTAGGG-AATAAGATCTATAAAC
* * *
23737727 TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCTTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG
23737766 GTGGTTTGAA
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
84 2 0.02
85 21 0.20
86 48 0.46
87 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGAAATATTGATCTGTTACCCTACTGCT
TAGGGAATAAGATCTATAAAC
Found at i:23738122 original size:43 final size:44
Alignment explanation
Indices: 23738040--23738123 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
23738030 ACATTTAGTA
* *
23738040 TGCTCCACTACGACTTCAAGGAGATGAGACTTGTAACTTCAGTC
1 TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCAGTC
* * * *
23738084 TGCTCCACTGC-ACTTCAGGGAGATAAGGCTAGTGACTTCA
1 TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCA
23738124 ATATGCTTCG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 24 0.71
44 10 0.29
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (44 bp):
TGCTCCACTACGACTTCAAGGAGATAAGACTAGTAACTTCAGTC
Found at i:23747310 original size:3 final size:3
Alignment explanation
Indices: 23747302--23747350 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
23747292 TAACAGCAAG
23747302 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
23747350 A
1 A
23747351 TATTTAATTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:23752812 original size:27 final size:26
Alignment explanation
Indices: 23752771--23752910 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 26
23752761 AGGAAGCGTC
*
23752771 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
23752798 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
23752825 CTGGCGGC-ATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* **
23752851 CTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
23752878 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
23752905 CTGGTG
1 CTGGTG
23752911 ACTTCGTCAC
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
26 28 0.30
27 64 0.70
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:23752860 original size:53 final size:53
Alignment explanation
Indices: 23752771--23752910 Score: 192
Period size: 53 Copynumber: 2.6 Consensus size: 53
23752761 AGGAAGCGTC
*
23752771 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
23752825 CTGGCGGC-ATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATTTTTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
23752878 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
23752911 ACTTCGTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 55 0.72
54 21 0.28
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:23756185 original size:47 final size:47
Alignment explanation
Indices: 23756052--23756222 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
23756042 ATAGTAAAAC
* * * *
23756052 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * *
23756101 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
23756147 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
23756194 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
23756223 TTTCTTCGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.25
47 56 0.54
48 10 0.10
49 12 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:23758025 original size:59 final size:59
Alignment explanation
Indices: 23757955--23758071 Score: 234
Period size: 59 Copynumber: 2.0 Consensus size: 59
23757945 CATGAATCTA
23757955 ATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGAG
1 ATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGAG
23758014 ATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
1 ATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGA
23758072 ATAGGATACA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (59 bp):
ATGAGTAGGAATTCATTCAATACCGATATGATTTATAGATCTCGCCAAACATTTAAGAG
Found at i:23758914 original size:15 final size:15
Alignment explanation
Indices: 23758811--23758905 Score: 106
Period size: 15 Copynumber: 6.4 Consensus size: 15
23758801 CAAAGATAAG
*
23758811 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
23758825 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
23758840 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
23758855 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
23758870 AAGAGATCCAGAATA
1 AAGAAATCCAGAATA
* *
23758885 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
23758900 AAGAAA
1 AAGAAA
23758906 CCCAAGATAC
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
14 11 0.16
15 56 0.80
16 3 0.04
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:23762574 original size:47 final size:47
Alignment explanation
Indices: 23762441--23762611 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
23762431 ATAGTAAAAC
* * * *
23762441 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * *
23762490 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
23762536 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
23762583 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
23762612 TTTCTCCGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.25
47 56 0.54
48 10 0.10
49 12 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:23766352 original size:42 final size:42
Alignment explanation
Indices: 23766270--23766407 Score: 145
Period size: 43 Copynumber: 3.2 Consensus size: 42
23766260 ACCTAGACGT
* * * *
23766270 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAG
1 GGTCTTACAAGAAATCAAATAT-GATGCCAATGTCCCAGACAG
* *
23766313 GGTCTTACAGGAAATCAAATATGATGCCAATGTCCCAGACAT
1 GGTCTTACAAGAAATCAAATATGATGCCAATGTCCCAGACAG
* *
23766355 GGTCTTACAAATAAATCATAAGT-CGATGCCAATGTCCCAGAC-G
1 GGTCTTAC-AAGAAATCA-AA-TATGATGCCAATGTCCCAGACAG
23766398 TGGTCTTACA
1 -GGTCTTACA
23766408 TGATAACACA
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
42 25 0.30
43 28 0.34
44 28 0.34
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (42 bp):
GGTCTTACAAGAAATCAAATATGATGCCAATGTCCCAGACAG
Found at i:23766395 original size:44 final size:42
Alignment explanation
Indices: 23766264--23766407 Score: 139
Period size: 44 Copynumber: 3.4 Consensus size: 42
23766254 CCAACGACCT
* * * * *
23766264 AGACGTGGTCTTAC-ATGTAATCAAATATCGATGCCACTATCCC
1 AGACATGGTCTTACAAAGAAATC-AA-ATCGATGCCAATGTCCC
* * *
23766307 AGACAGGGTCTTAC-AGGAAATCAAATATGATGCCAATGTCCC
1 AGACATGGTCTTACAAAGAAATCAAAT-CGATGCCAATGTCCC
*
23766349 AGACATGGTCTTACAAATAAATCATAAGTCGATGCCAATGTCCC
1 AGACATGGTCTTACAAAGAAATCA-AA-TCGATGCCAATGTCCC
*
23766393 AGACGTGGTCTTACA
1 AGACATGGTCTTACA
23766408 TGATAACACA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 25 0.29
44 30 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACAAAGAAATCAAATCGATGCCAATGTCCC
Found at i:23775125 original size:47 final size:47
Alignment explanation
Indices: 23775059--23775233 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 47
23775049 ACAACGCTTA
* * * *
23775059 GCCGATGCGTGTCCTAGACACGTCTTACACTGGCTATCTC-TGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCATATCGAG
* *
23775106 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATTTCTGTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATC-G-AG
* * *
23775153 -CAGATGCCATGTCCCAAACATGGTCTTACACTGGC-TCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTCAT-ATCGAG
*
23775200 GCCGAAGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
23775234 GCACAAATCA
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
45 3 0.03
46 22 0.21
47 58 0.55
48 22 0.21
49 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCATATCGAG
Found at i:23775210 original size:94 final size:92
Alignment explanation
Indices: 23774968--23775233 Score: 272
Period size: 94 Copynumber: 2.9 Consensus size: 92
23774958 ATAAATTGCC
* * * *
23774968 GATGCCATGTCCTAGACATGGTCTTGCATTGGCTCTCATACATGTGTGCTGATGCATGTCCTAGA
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGATGCATGTCCCAGA
* *
23775033 CATGTCTTACACTAGCACAACGCTTAGCC
64 CATGTCTTACACTGGCACAACGCTTAGCA
* * * *
23775062 GATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGTCCCAG
1 GATGCCATGTCCTAGACATGGTCTTACACTGGC--TCTCATAAT-GTGGCCGATGCATGTCCCAG
* ***
23775123 ACATGTCTTACTCTGGCACTCATTTCTGTA-CA
63 ACATGTCTTACACTGGCA--CAACGCT-TAGCA
* * *
23775155 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACA
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
23775220 TGTCTTACACTGGC
66 TGTCTTACACTGGC
23775234 GCACAAATCA
Statistics
Matches: 140, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
91 32 0.23
92 13 0.09
93 26 0.19
94 55 0.39
95 14 0.10
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (92 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACA
TGTCTTACACTGGCACAACGCTTAGCA
Found at i:23784659 original size:54 final size:54
Alignment explanation
Indices: 23784570--23784676 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
23784560 CATGGCTGCC
* * *
23784570 AGAACAGATAATGTGACAGAGTCACCTGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* * *
23784624 AGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
23784677 CAGGACGCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:23784678 original size:27 final size:27
Alignment explanation
Indices: 23784568--23784679 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
23784558 AGCATGGCTG
* *
23784568 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
23784594 CCTGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
23784622 CTAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
23784649 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
23784676 CCAG
1 CCAG
23784680 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:23786114 original size:24 final size:24
Alignment explanation
Indices: 23786087--23786162 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
23786077 CTAGATTTCC
**
23786087 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
23786111 TCCCTTATCAAATCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
23786135 TCCCTTATCAACTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTA
23786159 TCCC
1 TCCC
23786163 GACAGACTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.25, C:0.39, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:23801598 original size:29 final size:26
Alignment explanation
Indices: 23801562--23801630 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 26
23801552 AGAAAGTAGT
23801562 GAGCTTGAAGGAACACTGAAGAAATGAGG
1 GAGCTTGAAGGAA-A--GAAGAAATGAGG
*
23801591 GAGTTTGAAAGTTGAAAGAAGAAATGAGG
1 GAGCTTG-AAG--GAAAGAAGAAATGAGG
23801620 GAGCTTGAAGG
1 GAGCTTGAAGG
23801631 CTAAATGCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 1 0.03
28 3 0.09
29 24 0.69
30 3 0.09
31 1 0.03
32 3 0.09
ACGTcount: A:0.41, C:0.06, G:0.36, T:0.17
Consensus pattern (26 bp):
GAGCTTGAAGGAAAGAAGAAATGAGG
Found at i:23802255 original size:29 final size:29
Alignment explanation
Indices: 23802219--23802303 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
23802209 AATGAAAGTG
*
23802219 GAAAGAAGAAAGTAGGGAGCTTGAAGGAA
1 GAAAGAAGAAAGGAGGGAGCTTGAAGGAA
** * **
23802248 GAGTGAAGAAAGGAGGGAGTTTGAAGGTT
1 GAAAGAAGAAAGGAGGGAGCTTGAAGGAA
*
23802277 GAAAGAAGAAAGGAGGGAGCATGAAGG
1 GAAAGAAGAAAGGAGGGAGCTTGAAGG
23802304 CTAAAGGTAG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.44, C:0.02, G:0.42, T:0.12
Consensus pattern (29 bp):
GAAAGAAGAAAGGAGGGAGCTTGAAGGAA
Found at i:23802856 original size:627 final size:636
Alignment explanation
Indices: 23801307--23805448 Score: 3305
Period size: 668 Copynumber: 6.4 Consensus size: 636
23801297 GGATGTTACA
* * *
23801307 GGAACAAATAACCAGAAAGGAGAATCAACTCCCAAATAGGGAACATAATAGGACCATAATACCAT
1 GGAACAAATAACCAG--AGGAGAATCAACTGCCAAATAGAGAACATAATAGGACCATAACACCAT
* * * * * * *
23801372 GGACTCATCAAGACTTTAAATAGATTTACTCCTAAAGCAG-ATGTGCGAGAAAGTAAAGAATCGT
64 GGACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATC-T
* * * * * * **
23801436 TGTATAAGCGATTATAAAAAGGGCTGACAATGCAAGAGTTTTTATTCCAAACATGTTAAAGTAAA
128 TGTATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCGA
* * *
23801501 AAATAAGTAAA-AATGAAAAGGAT-AGGAAATGTGATGATGAGAGATGAAGGAAGAAAGTAGTGA
193 AAATAAGTAAACAATGAAAAGGATGA-GAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGGA
* * * * * *
23801564 GCTTGAAGGAACACTGAAGAAATGAGGGAGTTTGAAAGTTGAAAGAAGAAATGAGGGAGCTTGAA
257 GCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGAA
* * *
23801629 GGCTAAATGCAGTCTTGTGATTTTTGTGTAATTTTTGTAGGTGTAATTTTCATTTTTTTTTCATT
322 GGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCG-A---GTAA---TC-----CTTTTCATT
* ** * *
23801694 TTGTCTTATTCTAAATAAAAAAGTAAAACTATATTAGTGCAACGAAGACCACAATATAACCATTT
375 TTGTCTTATT-T-AAT-AAAAA--AAAATTATATTAGTGGGACTAAAACCACAATATAACCATTT
*
23801759 TTTATATTGAAAATGCTAACTGTTGTTATTGTTTTATATTACTAATCACCATATTTACTCGTATT
435 TTTATATTGAAAATGCTAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATT
* * * **
23801824 ATTATAGTATTTGAATTCAATTTTTTTGATAAGAGACTTTGTTGGAGGTTGCATTATAGGTTATT
500 ATTATAGTATTTGGATTCAATTTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATT
* * * *
23801889 GTGATCAATTTTAGATGTAATGAATTTGAGACGTGCATGTCATTACTATAACACCATATTTCCCC
565 GTGATC------A-AT-T--T-AA--T-AGACGTACATATCTTTACTATAATACCATATTTCCCC
* *
23801954 AAAATA-ATGTGTAAAAATTAGCAT
616 AAAA-ACA--TGT-AACATTAGCAG
* * * *
23801978 GGAACAATTAACTAGA-GAGGAAATTAACTGCCAAAATA-AGGAACATAATAGGACCATAATACC
1 GGAACAAATAACCAGAGGA-G-AATCAACTGCC-AAATAGA-GAACATAATAGGACCATAACACC
* * ** * *
23802041 ATGGACTCATAAAGAATTTAAACAACTTTTGACCTAAAGCAGAACGTGCGAGAAGGTAGAGAATC
62 ATGGACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATC
* *
23802106 ATTGTTTAAGCGATTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTC
127 -TTGTATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTC
* * * * * *
23802171 GAAAATAAGTAAGCAATGAAAAGGATGAGAAATTTGATAATGAAAGTGGAAAGAAGAAAGTAGGG
191 GAAAATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGG
23802236 AGCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGA
256 AGCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGA
*
23802301 AGGCTAAAGGTAGTCTTGTGATTTTTGTGTAATTTTC-A-T-ATCCTTTTCATTTTGTCTTA-TT
321 AGGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCGAGTAATCCTTTTCATTTTGTCTTATTT
*
23802362 -AT-AAAAAAAATTATATTAGTGGGACTAAAACCACAATCTAACCATTTTTTATATTGAAAATGC
386 AATAAAAAAAAATTATATTAGTGGGACTAAAACCACAATATAACCATTTTTTATATTGAAAATGC
* * * * **
23802425 TAACTATTGTTATGGTTTTATATTACTAATCACCATATTTGCTCATATTATTATAATATTTATAT
451 TAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATTATTATAGTATTTGGAT
* *
23802490 TCAATTTTTTCGACAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATTTTGATCAATTT-A-AG
516 TCAATTTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATTGTGATCAATTTAATAG
*
23802553 ACGTACATATCTTTACTATAATACCATATTCCCCCAAAAACATG-AACATTAGCAG
581 ACGTACATATCTTTACTATAATACCATATTTCCCCAAAAACATGTAACATTAGCAG
* * *
23802608 GGAACAAATAACCAGAGGAGAATCAACTTCCAAATAGAGAACATAATAGGAACATAATACCATGG
1 GGAACAAATAACCAGAGGAGAATCAACTGCCAAATAGAGAACATAATAGGACCATAACACCATGG
*
23802673 ACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAAAATGTGCGAG-AGGTAGAGAATCTCTG
66 ACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATCT-TG
* * * * * **
23802737 TATAAGCGGTTATAAAAAGGCCTAACCATTCGAGAGATTCTATTCAAAATGTTTTAGAGTCGAAA
130 TATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCGAAA
*
23802802 ATAAGTAAACAATGAAAAGGATGAGAAATATAATGATGAGAGTTGAAGGAAGAAA-TGAGGGAGC
195 ATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGT-AGGGAGC
* **** * ** * ***** * *
23802866 TTGAAGGCTAA-AG-GCAG--TCTTGTGA-TTT--TTG-TGTAA-TTTTCA-TA-GGTG--T-AA
259 TTGAAGG--AAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGAA
** ** * * * * * * ** **** * **
23802917 -TTTTTA-G-ATTCTTAT-AATTTTGTCT--TATTCTAAAAAAAAATTT-ATATTAG----ATGG
322 GGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCGAGTAATCCTTTTCAT-TTTGTCTTATTT
* * * * * **** * *** * * ** * *
23802971 ACTAAAACCACAA-TATAATCGT-TTTTTATATTGAAAATTCTAACTGTTGTTTTCAT-TT-TAT
386 AATAAAA-AAAAATTATATTAGTGGGACTAAAACCACAA-TATAACCATT-TTTT-ATATTGAAA
* * * * * *
23803032 AT--T-AC------TA-----AT-----------CACCAAATTTGCTCGTTTTATTAAACTATTT
447 ATGCTAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATTATTATAGTATTT
*
23803072 GGATTCAATTTTTTCGATAAGAGACATTT-TTTGAGGTGGCATTGCAGGTTATTGTGATCAATTT
512 GGATTCAATTTTTTCGATAAGAGAC-TTTGTTGGAGGTGGCATTGCAGGTTATTGTGATCAA--T
* * * *
23803136 GAGACGTAATGAAATTGAGATGTACATGTCTTTATTATAATACCATATTTCCCCAAAAACGTGTA
574 ------T--T--AA-T-AGACGTACATATCTTTACTATAATACCATATTTCCCCAAAAACATGT-
23803201 AACATTAGCAG
626 AACATTAGCAG
* * * *
23803212 GGAACAAATAACAAAAGAGGAGAATAAACTGCCAAATAGGGAACATAATAGGACCATAAAACCAT
1 GGAACAAATAAC--CAGAGGAGAATCAACTGCCAAATAGAGAACATAATAGGACCATAACACCAT
* * * *
23803277 GGACTCAAAAAGATTTTAAACAACTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATCGC
64 GGACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATC-T
* * * * ** *
23803342 TATAGAAGCGGTTGTAAAAAGGGTTCCCCATGCAAGAGTCTCTATTCCAAACATTTTAGAGTTC-
128 TGTATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAG-TCG
* * * * *
23803406 AAAATAAGTAAACAGTGAAAAGGATGAGAAATATAATGACGAAAGTTCAAGGAAGAAAGTAGGGA
192 AAAATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGGA
* * *
23803471 GCTTGAAGGAAAAGTGAAGAAATGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGTGCATGAA
257 GCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGAA
* * *
23803536 GGCTAAAGGCAGTCTTGTGAATTTTGTGTAATTTTCGTACGTGTAATTTTCAGATTCCTGTGATT
322 GGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCG-A---GTAA---TC--CTT--T-TCATT
** * *
23803601 TTGTCTTATTCTAAATAAAAAAGAAAAATTATATTAGTGGGACTAAAACCACGGTTTAACTATTT
375 TTGTCTTATT-T-AAT--AAAA-AAAAATTATATTAGTGGGACTAAAACCACAATATAACCATTT
* * *
23803666 TCTATATTTAAAATGCTAACTGTTGATATGG-TTTATATTACTAATCACCATATTTACTCGTATT
435 TTTATATTGAAAATGCTAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATT
* * *
23803730 ATTATAGTATTT-GATTCAATTTTTTCGATAAGAGACTTT-TTTGATGTGGCATTACAGGTTATT
500 ATTATAGTATTTGGATTCAATTTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATT
* * * * *
23803793 GTAATCAATTTGAGACGTAATGAATTTGAGACATACATGTCTTTATTATAATACCATAATTCCCC
565 GTGATCAA--T------T--T-AA--T-AGACGTACATATCTTTACTATAATACCATATTTCCCC
*
23803858 AAAAACGTGTAAACATTAGCAG
616 AAAAACATGT-AACATTAGCAG
* * *
23803880 GGAACAAATAACCAGAAAGCAAAATCAACTACCAAATATG-GAACATAATAGGACCATAACACCA
1 GGAACAAATAACCAG--AGGAGAATCAACTGCCAAATA-GAGAACATAATAGGACCATAACACCA
* * * * *
23803944 TGGACTTATAAAGGCTTTAAACAGATTTTCTCCTAAATCAAAATGTGCGAGAAGGT-GCATAATC
63 TGGACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAG-AGAATC
* * * * * *
23804008 TTTATATAAGGGGTTATAAAAAGGGCTGACCATTCAACAGTTTCTATTCCAAACATTTTAGAGTA
127 -TTGTATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTC
* * * * *
23804073 AAAAATAAGTAAACAATGAAAAGGATGAGAAATATGATTATGAGAGTTGAAAGAGGAAATTAGGG
191 GAAAATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGG
* ** * *** *
23804138 AGCTCGAAGGAAGAGTGTTGAAAGGAGGGAGTTTGAAGGTTGAAAGAAAAAAGGACAAAGCTTGA
256 AGCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGA
* * *
23804203 AGGCTAAAGGCAATCTTGTGATTTTTGTGTAATTTTCGTAGGTGTAATTTTTAGATCCTTGTGAT
321 AGGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCG-A---G-------TA-ATCCTTTTCAT
* ** * *
23804268 TTTGTCTTATTTTAAATAAAAAAAAGAAAGAAAAATTATATTAGTAGGACTAAGGCCATAGTATA
374 TTTGTCTTA-TTT-AAT-------A-AAA-AAAAATTATATTAGTGGGACTAAAACCACAATATA
* * *
23804333 ACCATTTTTTATATTGAAAATGTTAACTGTTGTTATGGTTTTATATTTCTAATCACCATATTTGC
428 ACCATTTTTTATATTGAAAATGCTAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTAC
* * * * *
23804398 TCGTATTATTATAGTATTTGGATTCAATTATTTCAATAAGAGATTTTGTTGAAGGTGGCATTGTA
493 TCGTATTATTATAGTATTTGGATTCAATTTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCA
* * *
23804463 GGTTATTGTCATAAATTTGAGGCATAATGAATTTGAGACGTACATGTCTTTACTATAATACCATA
558 GGTTATTGTGATCAA--T------T--T-AA--T-AGACGTACATATCTTTACTATAATACCATA
* * * *
23804528 TTTCTCCAAGAACGTGTAACATTAGTAG
609 TTTCCCCAAAAACATGTAACATTAGCAG
* *
23804556 GGAACAAATAACTCGAGTGGAGAATCAACTGCCAAATATG-GAACATAATAAGACCATAACACCA
1 GGAACAAATAAC-C-AGAGGAGAATCAACTGCCAAATA-GAGAACATAATAGGACCATAACACCA
* * * ** * *
23804620 TTGACTCAT-AAGACTTTAAACAG-TTTTCTCTTAAAGCAGAATGTATGAGAAGGTACAAAATCG
63 TGGACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATC-
* * * * *
23804683 ATGTATAAACGGTTATAAAAAGGGCTGACCATGCAATAGTTTCTATTCCAAACATTATAGAGTCG
127 TTGTATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCG
* *
23804748 AAAATAAGTAAACAATGAAAAGAATGAGAAACATGATGATGAGAGTTGAAGGAAGAAAGTAGGGA
192 AAAATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGGA
*
23804813 GCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAATGAGGGAGCATGAA
257 GCTTGAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGAA
* *
23804878 GGCTAAAGGCTGTCTTGTGATTTTTGTGTAATTTTCGTAGTGTAAT--TTTTAGATTCTTGTGAT
322 GGCTAAAGGCAGTCTTGTGATTTTTGTGTAATTTTCG-A--GTAATCCTTTT-CA-T-TT-TG-T
* * * * * *
23804941 TTTATCTTATTCTTAAAAAAATTTATATTAGTGGGACTAAAACCACAATAAAACCGTTTTTTATA
379 CTTAT-TTA--ATAAAAAAAAATTATATTAGTGGGACTAAAACCACAATATAACCATTTTTTATA
* *
23805006 TTGAAAATGTTAACTGTTGATATGG-TTTATATTACTAATCACCATATTTACTCGTATTATTATA
441 TTGAAAATGCTAACTGTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATTATTATA
* * * **
23805070 GTATTTGGATTCAATTATTTCGATAATAGACTTTGTTAGAGGTGAAATTGCAGGTTATTGTGATC
506 GTATTTGGATTCAATTTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATTGTGATC
* * * *** * ** * *
23805135 AATTT--GAGACGTA-ATGAAT-TTGA-GA-CGGA-CATGTCTTTACTATAATACCA--T-A-AT
571 AATTTAATAGACGTACAT--ATCTTTACTATAATACCATAT-TTCCCCA-AA-AACATGTAACAT
23805189 T--C--
631 TAGCAG
** * * * *
23805191 ----CTCA-AA--A-AGCAGAATCAACTACCAAATATAGAACATAATAAGACCATAACACCATGG
1 GGAACAAATAACCAGAGGAGAATCAACTGCCAAATAGAGAACATAATAGGACCATAACACCATGG
* * * * *
23805248 GCTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGTGAGAAGGTACAGAATTTTTA
66 ACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAA-TCTTG
*
23805313 TATAAGCGGTTATAAAAAGGACTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCGAAA
130 TATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCGAAA
* *
23805378 ATAAGTAAACAATGAAAAGGATGAGAAATATGATGATAAGAGTTGAAGGAAGAAAGGAGGGAGCT
195 ATAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGGAGCT
23805443 TGAAGG
260 TGAAGG
23805449 CTAAAGGCGT
Statistics
Matches: 2860, Mismatches: 448, Indels: 370
0.78 0.12 0.10
Matches are distributed among these distances:
586 78 0.03
587 3 0.00
588 1 0.00
594 1 0.00
596 1 0.00
597 1 0.00
599 1 0.00
602 43 0.02
604 23 0.01
605 2 0.00
606 93 0.03
607 130 0.05
608 6 0.00
609 8 0.00
610 11 0.00
611 31 0.01
612 23 0.01
613 7 0.00
614 3 0.00
615 3 0.00
616 5 0.00
618 4 0.00
619 3 0.00
620 3 0.00
621 5 0.00
622 7 0.00
623 9 0.00
624 3 0.00
625 56 0.02
626 18 0.01
627 296 0.10
628 75 0.03
629 14 0.00
630 26 0.01
631 4 0.00
632 2 0.00
633 1 0.00
634 39 0.01
636 1 0.00
637 4 0.00
638 3 0.00
639 3 0.00
640 6 0.00
641 8 0.00
642 5 0.00
643 16 0.01
644 4 0.00
645 12 0.00
646 18 0.01
647 4 0.00
648 1 0.00
649 3 0.00
650 158 0.06
651 1 0.00
652 4 0.00
654 2 0.00
655 2 0.00
656 1 0.00
657 2 0.00
658 16 0.01
659 95 0.03
660 64 0.02
661 3 0.00
663 5 0.00
664 2 0.00
665 3 0.00
666 7 0.00
667 9 0.00
668 438 0.15
669 30 0.01
670 35 0.01
671 78 0.03
672 87 0.03
673 143 0.05
674 306 0.11
675 58 0.02
676 96 0.03
677 86 0.03
678 2 0.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (636 bp):
GGAACAAATAACCAGAGGAGAATCAACTGCCAAATAGAGAACATAATAGGACCATAACACCATGG
ACTCATAAAGACTTTAAACAGCTTTTCTCCTAAATCAGAATGTGCGAGAAGGTAGAGAATCTTGT
ATAAGCGGTTATAAAAAGGGCTAACCATGCAAGAGTTTCTATTCCAAACATTTTAGAGTCGAAAA
TAAGTAAACAATGAAAAGGATGAGAAATATGATGATGAGAGTTGAAGGAAGAAAGTAGGGAGCTT
GAAGGAAGAGTGAAGAAAGGAGGGAGTTTGAAGGTTGAAAGAAGAAAGGAGGGAGCATGAAGGCT
AAAGGCAGTCTTGTGATTTTTGTGTAATTTTCGAGTAATCCTTTTCATTTTGTCTTATTTAATAA
AAAAAAATTATATTAGTGGGACTAAAACCACAATATAACCATTTTTTATATTGAAAATGCTAACT
GTTGTTATGGTTTTATATTACTAATCACCATATTTACTCGTATTATTATAGTATTTGGATTCAAT
TTTTTCGATAAGAGACTTTGTTGGAGGTGGCATTGCAGGTTATTGTGATCAATTTAATAGACGTA
CATATCTTTACTATAATACCATATTTCCCCAAAAACATGTAACATTAGCAG
Found at i:23803818 original size:16 final size:16
Alignment explanation
Indices: 23803793--23803824 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23803783 ACAGGTTATT
23803793 GTAATCAATTTGAGAC
1 GTAATCAATTTGAGAC
*
23803809 GTAATGAATTTGAGAC
1 GTAATCAATTTGAGAC
23803825 ATACATGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (16 bp):
GTAATCAATTTGAGAC
Found at i:23804860 original size:29 final size:29
Alignment explanation
Indices: 23804792--23804879 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
23804782 GATGATGAGA
* *
23804792 GTTGAAGGAAGAAAGTAGGGAGCTTGAAG
1 GTTGAAAGAAGAAAGGAGGGAGCTTGAAG
** ** *
23804821 GAAGAGTGAAGAAAGGAGGGAGTTTGAAG
1 GTTGAAAGAAGAAAGGAGGGAGCTTGAAG
* *
23804850 GTTGAAAGAAGAAATGAGGGAGCATGAAG
1 GTTGAAAGAAGAAAGGAGGGAGCTTGAAG
23804879 G
1 G
23804880 CTAAAGGCTG
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.41, C:0.02, G:0.42, T:0.15
Consensus pattern (29 bp):
GTTGAAAGAAGAAAGGAGGGAGCTTGAAG
Found at i:23808150 original size:14 final size:15
Alignment explanation
Indices: 23808133--23808163 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23808123 GAATATGATA
23808133 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
23808147 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
23808162 AA
1 AA
23808164 CTAATAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:23814008 original size:23 final size:22
Alignment explanation
Indices: 23813966--23814009 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
23813956 TCTTAATAAT
*
23813966 ATTATTAATTAGTGATATTTAG
1 ATTATTAATTAATGATATTTAG
23813988 ATTATATAATTAAT-ATAATTTA
1 ATTAT-TAATTAATGAT-ATTTA
23814010 CAAATATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (22 bp):
ATTATTAATTAATGATATTTAG
Found at i:23816658 original size:6 final size:6
Alignment explanation
Indices: 23816647--23816679 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
23816637 AATTAATTGC
23816647 GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT GGT
1 GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT GGT
23816680 AGCTGCTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.15, G:0.36, T:0.48
Consensus pattern (6 bp):
GGTTCT
Found at i:23820963 original size:355 final size:355
Alignment explanation
Indices: 23820312--23821023 Score: 1406
Period size: 355 Copynumber: 2.0 Consensus size: 355
23820302 GGTCTATGCA
23820312 AGTAGGTTGTCCCTTTGAACTTAGATATTGGGATCTTCAGTCAACTAGGTTGGGTTTTCCTTCAC
1 AGTAGGTTGTCCCTTTGAACTTAGATATTGGGATCTTCAGTCAACTAGGTTGGGTTTTCCTTCAC
23820377 ATAGTGCCTTTAGTTTTTCATGGGCTTTAGTTTCATTCCTTTTGATTTTTTATCAACCTGATCTC
66 ATAGTGCCTTTAGTTTTTCATGGGCTTTAGTTTCATTCCTTTTGATTTTTTATCAACCTGATCTC
23820442 GATTTAAGCCTGTAGTTAGCGGATTACAATGTTATCTTTTGATTTTACAAAATCAATAGAGATAA
131 GATTTAAGCCTGTAGTTAGCGGATTACAATGTTATCTTTTGATTTTACAAAATCAATAGAGATAA
*
23820507 CTCCGTTTGAGATCAATTGTCTAATGGTATTGTGTCGATGATGCATATGTCTTGCTTGGTTATCA
196 CTCCGTTTGAGATCAATTGTCTAACGGTATTGTGTCGATGATGCATATGTCTTGCTTGGTTATCA
23820572 CAATATATGCATATTGTGGGCACAAGCTTTGGCCAGTCACGAATATCCTCCAAGAAGTTTCGAAG
261 CAATATATGCATATTGTGGGCACAAGCTTTGGCCAGTCACGAATATCCTCCAAGAAGTTTCGAAG
23820637 CGATTCGGCCTCTTCTTTAGATTTGTTTAG
326 CGATTCGGCCTCTTCTTTAGATTTGTTTAG
23820667 AGTAGGTTGTCCCTTTGAACTTAGATATTGGGATCTTCAGTCAACTAGGTTGGGTTTTCCTTCAC
1 AGTAGGTTGTCCCTTTGAACTTAGATATTGGGATCTTCAGTCAACTAGGTTGGGTTTTCCTTCAC
*
23820732 ATAGTGCCTTTAGTTTTTCATGGGCTTTAGTTTTATTCCTTTTGATTTTTTATCAACCTGATCTC
66 ATAGTGCCTTTAGTTTTTCATGGGCTTTAGTTTCATTCCTTTTGATTTTTTATCAACCTGATCTC
23820797 GATTTAAGCCTGTAGTTAGCGGATTACAATGTTATCTTTTGATTTTACAAAATCAATAGAGATAA
131 GATTTAAGCCTGTAGTTAGCGGATTACAATGTTATCTTTTGATTTTACAAAATCAATAGAGATAA
23820862 CTCCGTTTGAGATCAATTGTCTAACGGTATTGTGTCGATGATGCATATGTCTTGCTTGGTTATCA
196 CTCCGTTTGAGATCAATTGTCTAACGGTATTGTGTCGATGATGCATATGTCTTGCTTGGTTATCA
23820927 CAATATATGCATATTGTGGGCACAAGCTTTGGCCAGTCACGAATATCCTCCAAGAAGTTTCGAAG
261 CAATATATGCATATTGTGGGCACAAGCTTTGGCCAGTCACGAATATCCTCCAAGAAGTTTCGAAG
23820992 CGATTCGGCCTCTTCTTTAGATTTGTTTAG
326 CGATTCGGCCTCTTCTTTAGATTTGTTTAG
23821022 AG
1 AG
23821024 CTACAAACTC
Statistics
Matches: 355, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
355 355 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (355 bp):
AGTAGGTTGTCCCTTTGAACTTAGATATTGGGATCTTCAGTCAACTAGGTTGGGTTTTCCTTCAC
ATAGTGCCTTTAGTTTTTCATGGGCTTTAGTTTCATTCCTTTTGATTTTTTATCAACCTGATCTC
GATTTAAGCCTGTAGTTAGCGGATTACAATGTTATCTTTTGATTTTACAAAATCAATAGAGATAA
CTCCGTTTGAGATCAATTGTCTAACGGTATTGTGTCGATGATGCATATGTCTTGCTTGGTTATCA
CAATATATGCATATTGTGGGCACAAGCTTTGGCCAGTCACGAATATCCTCCAAGAAGTTTCGAAG
CGATTCGGCCTCTTCTTTAGATTTGTTTAG
Found at i:23827047 original size:37 final size:37
Alignment explanation
Indices: 23826971--23827049 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
23826961 TTATTACGAA
* * *
23826971 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23827008 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGA-AGTCATCGG
23827045 GTCTT
1 GTCTT
23827050 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23827168 original size:47 final size:47
Alignment explanation
Indices: 23827090--23827621 Score: 920
Period size: 47 Copynumber: 11.2 Consensus size: 47
23827080 CCCTTCGGGA
* * * * * *
23827090 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23827137 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827184 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23827374 CTTATCACATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23827421 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23827515 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23827564 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827611 CTTATCACATA
1 CTTATCACATA
23827622 GAATCCTAAA
Statistics
Matches: 464, Mismatches: 17, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 371 0.80
49 93 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23827411 original size:190 final size:190
Alignment explanation
Indices: 23827090--23827621 Score: 942
Period size: 190 Copynumber: 2.8 Consensus size: 190
23827080 CCCTTCGGGA
* * * * * * * *
23827090 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
23827153 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
23827218 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
23827343 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTGATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
23827408 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23827468 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
23827533 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
23827598 TCGGCCATTAGGCCTTATCACATA
131 TCGGCCATTAGGCCTTATCACATA
23827622 GAATCCTAAA
Statistics
Matches: 330, Mismatches: 12, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
188 47 0.14
190 283 0.86
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23830541 original size:40 final size:40
Alignment explanation
Indices: 23830509--23830764 Score: 343
Period size: 40 Copynumber: 6.4 Consensus size: 40
23830499 CCAGCATGAT
* * * *
23830509 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
23830549 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
23830589 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
23830629 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
23830669 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * * *
23830709 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
23830750 TGC-CTTCGGGACTTA
1 TGCTCTTCGGGACTTA
23830765 ACCCAGATTT
Statistics
Matches: 192, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 180 0.94
41 12 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:23830797 original size:80 final size:79
Alignment explanation
Indices: 23830541--23830843 Score: 254
Period size: 80 Copynumber: 3.8 Consensus size: 79
23830531 ATATAACACC
* ** * * * *
23830541 AGCACGAATGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTA
1 AGCACCAATGCTCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGC-CTTCGGAACTTA
* * *
23830605 GCCCGGATACATCACT
64 ACCCAGATACATAACT
** * * * *
23830621 AGCATGAATGCTCTTCGGGACTTAGCCCGG-ATACATCACTAGCACGAATGCTCTTCGGAACTTA
1 AGCACCAATGCTCTTCGGGACTTAGCCCGGTATA-GTAACTCGCACAAATGC-CTTCGGAACTTA
* * *
23830685 GCCCGGATACATCACT
64 ACCCAGATACATAACT
** *
23830701 AGCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAA
1 AGCACCAATGCTCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGAACTTAA
**
23830766 CCCAGATTTAGTAACT
65 CCCAGATACA-TAACT
* * * * *
23830782 CGCACCAATGC-CTTCGGG-TTTAGCCCGGAATTAGTAACTCGTACAAATGCCTTCGGATCTTA
1 AGCACCAATGCTCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGAACTTA
23830844 GTCCGGATAT
Statistics
Matches: 195, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
78 4 0.02
79 37 0.19
80 126 0.65
81 25 0.13
82 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
AGCACCAATGCTCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGAACTTAAC
CCAGATACATAACT
Found at i:23830797 original size:120 final size:120
Alignment explanation
Indices: 23830509--23830798 Score: 298
Period size: 120 Copynumber: 2.4 Consensus size: 120
23830499 CCAGCATGAT
* * * * * * ***
23830509 TGCTCTTCGGGACCTAGCCCGGATATA-ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACTTAACCCAGATACATA-ACTAGCACCAATGCTCTTCGGAACTTAGCACGGAT
* * **
23830573 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
65 ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACAAA
* * * * *
23830629 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAACCCAGATACATAACTAGCACCAATGCTCTTCGGAACTTAGCACGGATA
* * * * *
23830694 CATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAA
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TAACTAGCACAAA
** *
23830750 TGC-CTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGC-CTTCGG
1 TGCTCTTCGGGACTTAACCCAGATACA-TAACTAGCACCAATGCTCTTCGG
23830799 GTTTAGCCCG
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
120 118 0.83
121 25 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
TGCTCTTCGGGACTTAACCCAGATACATAACTAGCACCAATGCTCTTCGGAACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATAACTAGCACAAA
Found at i:23830890 original size:40 final size:39
Alignment explanation
Indices: 23830513--23830890 Score: 225
Period size: 40 Copynumber: 9.5 Consensus size: 39
23830503 CATGATTGCT
* * *
23830513 CTTCGGGACCTAGCCCGGATATA--ACACCAGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTA-ACTAGCAC-AAAGC
** * * *
23830552 TCTTCGGGGTTTAGCACGGATATA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCAC-AAAGC
* * * * *
23830592 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCA-CAAAGC
* * *
23830632 TCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCAC-AAAGC
* * * * *
23830672 TCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCA-CAAAGC
* *
23830712 TCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAA-GC
* * * * *
23830753 CTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCA-CAAAGC
* * *
23830793 CTTCGGG-TTTAGCCCGGA-ATTAGTAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAA-GC
* * * *
23830832 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGTACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCACAAAGC
23830872 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
23830891 CATCATTCGA
Statistics
Matches: 284, Mismatches: 40, Indels: 28
0.81 0.11 0.08
Matches are distributed among these distances:
38 5 0.02
39 25 0.09
40 230 0.81
41 24 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAAGC
Found at i:23832817 original size:37 final size:37
Alignment explanation
Indices: 23832741--23832819 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
23832731 TTATTACGAA
* * *
23832741 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23832778 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGA-AGTCATCGG
23832815 GTCTT
1 GTCTT
23832820 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23832938 original size:47 final size:47
Alignment explanation
Indices: 23832860--23833380 Score: 871
Period size: 47 Copynumber: 11.0 Consensus size: 47
23832850 CCCTTCGGGA
* * * * * * *
23832860 CTTATCACATTTATACGCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23832907 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23832954 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23833001 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23833048 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23833097 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23833144 CTTATCACATATATACACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23833191 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23833240 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23833287 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23833334 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
23833381 ATCACATCGG
Statistics
Matches: 449, Mismatches: 19, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 320 0.71
49 129 0.29
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.