Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 77 of 320
Found at i:24161093 original size:177 final size:177
Alignment explanation
Indices: 24160790--24161308 Score: 743
Period size: 177 Copynumber: 2.9 Consensus size: 177
24160780 GCAACACCAG
* * **
24160790 TGAAAATTGCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATAGCAAATCTTATCT
1 TGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCT
*
24160855 CCATGTAGCGGCAATGGACCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCA
66 CCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCA
* *
24160920 AGTTCAAGATACAAGTCTTATCTCCTTGAAGTTACAGTGGAGCAGAC
131 AGTTCAAGATACAAGTCTTATCTCCTTGAAGTTACAATAGAGCAGAC
* * *
24160967 TGAAAATTACAGATTTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCT
1 TGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCT
* *
24161032 CCATGTAGCGGCAATGGAGCAGATTTAAGCTACCAGCCTTATCTCCCTGAAGTTACAGTGGAGCA
66 CCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCA
* * * *
24161097 AGTTCAAGAAACAAGTCTTATCTCCCTGAAGTTGCAATAGAGCAGGC
131 AGTTCAAGATACAAGTCTTATCTCCTTGAAGTTACAATAGAGCAGAC
* * * * * *
24161144 TAAAAATTGCATATCTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGACAGTGAATTTTATCT
1 TGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCT
* * *
24161209 CCATGTAGCGGCAATGGAGCAGATTTAAGACCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGT
66 CCATGTAGCGGCAATGGAGCAGATTTAAG-CCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGC
* * * *
24161274 AGGTT-AAAATTACCAATTCTTATCTCCTTCAAGTT
130 AAGTTCAAGA-TA-CAAGTCTTATCTCCTTGAAGTT
24161309 TCAGCAGAGT
Statistics
Matches: 303, Mismatches: 36, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
177 249 0.82
178 35 0.12
179 19 0.06
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (177 bp):
TGAAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATAGTGAATCTTATCT
CCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGGAGCA
AGTTCAAGATACAAGTCTTATCTCCTTGAAGTTACAATAGAGCAGAC
Found at i:24161251 original size:89 final size:88
Alignment explanation
Indices: 24160804--24161257 Score: 265
Period size: 89 Copynumber: 5.1 Consensus size: 88
24160794 AATTGCAGAT
* * * * **
24160804 CTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATAGCAAATCTTATCTCCATGTAGCGGCAA
1 CTTATCTCCCTAAGCAATAGTGGAGAAGATCGAAGA-AGTGAATCTTATCTCCATGTAGCGGCAA
* * * *
24160869 TGGACCAGATTTAAG-CCACCAGC
65 TGGAGCAGATTTAAGACTACAAAC
**** * * * * ***
24160892 CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTC-AAG-A-TACAAGTCTTATCTCCTTGAAGTTA
1 CTTATCTCCCT-AAGCAATAGTGGAG-AAGATCGAAGAAGT-GAA-TCTTATCTCCATGTAGCGG
* * * * * * *
24160954 CAGTGGAGCAGACTGAAAATTACAGAT
62 CAATGGAGCAGATTTAAGACTACAAAC
* * * *
24160981 TTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTAGCGGCAA
1 CTTATCTCCCTAAGCAATAGTGGAGAAGATCGAAGA-AGTGAATCTTATCTCCATGTAGCGGCAA
* *
24161046 TGGAGCAGATTTAAG-CTACCAGC
65 TGGAGCAGATTTAAGACTACAAAC
** * * ** * * **
24161069 CTTATCTCCCTGAAGTTACAGTGGAGCAAGTTC-AAGAA-ACAAGTCTTATCTCCCTGAAGTTGC
1 CTTATCTCCCT-AAGCAATAGTGGAG-AAGATCGAAGAAGTGAA-TCTTATCTCCATGTAGCGGC
* ** * * * * * *
24161132 AATAGAGCAGGCTAAAAATTGCATAT
63 AATGGAGCAGATTTAAGACTACAAAC
* *
24161158 CTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGACAGTGAATTTTATCTCCATGTAGCGGCAA
1 CTTATCTCCCTAAGCAATAGTGGAGAAGATCGAAGA-AGTGAATCTTATCTCCATGTAGCGGCAA
*
24161223 TGGAGCAGATTTAAGACCACAAAC
65 TGGAGCAGATTTAAGACTACAAAC
24161247 CTTATCTCCCT
1 CTTATCTCCCT
24161258 GAAGTTGCAG
Statistics
Matches: 259, Mismatches: 91, Indels: 31
0.68 0.24 0.08
Matches are distributed among these distances:
87 13 0.05
88 108 0.42
89 125 0.48
90 12 0.05
91 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (88 bp):
CTTATCTCCCTAAGCAATAGTGGAGAAGATCGAAGAAGTGAATCTTATCTCCATGTAGCGGCAAT
GGAGCAGATTTAAGACTACAAAC
Found at i:24161741 original size:5 final size:5
Alignment explanation
Indices: 24161731--24161772 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
24161721 GGAAGATATC
24161731 ATTTT ATTTT A-TTT A-TTT ATTTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT ATT
24161773 ATTAAATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 8 0.23
5 23 0.66
6 4 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:24168575 original size:28 final size:28
Alignment explanation
Indices: 24168535--24168613 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
24168525 GCAATCAAAT
* * *
24168535 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
24168563 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
24168591 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
24168614 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:24170604 original size:28 final size:28
Alignment explanation
Indices: 24170573--24170812 Score: 228
Period size: 28 Copynumber: 8.5 Consensus size: 28
24170563 GTGAACATAG
*
24170573 GCACTGTGTGTGTGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
24170601 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *****
24170629 GCACTGTGTGTGCGAGATCGGTTGTTAA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
24170657 GGCACTGTGTGTGCGAGTTTCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
24170686 GCACTGTGTGTGCGAGATCGGTTTTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
24170714 GGCACTGTGTGTGCGAGTTTCGTAACCGA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
24170743 GCACTGTGTGTGCGAGATCAGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* *
24170771 GGCACTGTGTGTGCAAGTTCCGTAACCAA
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
24170800 GCACTGTGTGTGC
1 GCACTGTGTGTGC
24170813 AAGATCGGTT
Statistics
Matches: 164, Mismatches: 45, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
28 103 0.63
29 61 0.37
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:24170669 original size:57 final size:57
Alignment explanation
Indices: 24170601--24170842 Score: 376
Period size: 57 Copynumber: 4.2 Consensus size: 57
24170591 CCGTAACCGA
*
24170601 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTAAG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAG
* * *
24170658 GCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCGGTTTTTGAG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAG
* * *
24170715 GCACTGTGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAG
* * *
24170772 GCACTGTGTGTGCAAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAG
24170829 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
24170843 AAATGAGATC
Statistics
Matches: 171, Mismatches: 12, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
57 164 0.96
59 7 0.04
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (57 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:24175731 original size:38 final size:37
Alignment explanation
Indices: 24175646--24175779 Score: 153
Period size: 38 Copynumber: 3.5 Consensus size: 37
24175636 ATAAAATAAA
* *
24175646 TTGTGCTGAG-ATTGTATCCGGGCTTAAAGACCCGCAGGC
1 TTGTGCTG-GTATTATATCCGGG-TTAAA-TCCCGCAGGC
* *
24175685 TATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGC
1 T-TGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
24175723 TTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCC
1 TT-GTGCTGGTATTATATCCGGGTTAAATCCCGCAGG-C
* *
24175762 TAGTGCTAGTATTATATC
1 TTGTGCTGGTATTATATC
24175780 TGAGTTTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
37 1 0.01
38 57 0.68
39 9 0.11
40 17 0.20
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (37 bp):
TTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGC
Found at i:24179961 original size:28 final size:28
Alignment explanation
Indices: 24179921--24179999 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
24179911 GCAATCAAAT
* * * *
24179921 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAAA
*
24179949 ATGGCACTTAGTGTGCGAGATATTGAAA
1 ATGGCACTTAGTGTGCGAAATATTGAAA
* *
24179977 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
24180000 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAAA
Found at i:24183795 original size:28 final size:27
Alignment explanation
Indices: 24183694--24183795 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
24183684 TCAGTGTTAA
* *
24183694 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
24183722 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
24183754 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
24183782 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
24183796 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:24183815 original size:60 final size:59
Alignment explanation
Indices: 24183695--24183831 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
24183685 CAGTGTTAAC
* *
24183695 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* *
24183756 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
* *
24183816 TGGGCCTTGGCCATAT
1 TGGGCCTAGCCCATAT
24183832 TAACACAGTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 4 0.06
60 52 0.78
61 11 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:24186200 original size:19 final size:18
Alignment explanation
Indices: 24186163--24186206 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
24186153 ATACATGCAG
24186163 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
24186180 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
24186199 TACTAATT
1 TAATAATT
24186207 AAAATTTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:24190657 original size:14 final size:14
Alignment explanation
Indices: 24190621--24190657 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
24190611 GAAAAAAATG
24190621 AAATTATTTAGATT
1 AAATTATTTAGATT
24190635 AAATT-TTTAGATT
1 AAATTATTTAGATT
24190648 AAATTATTTA
1 AAATTATTTA
24190658 AGAGATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (14 bp):
AAATTATTTAGATT
Found at i:24191047 original size:18 final size:19
Alignment explanation
Indices: 24191024--24191060 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24191014 TATTTCCCCC
*
24191024 AATTT-CCCTAATCCCTAA
1 AATTTCCCCAAATCCCTAA
24191042 AATTTCCCCAAATCCCTAA
1 AATTTCCCCAAATCCCTAA
24191061 GCATCCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTTCCCCAAATCCCTAA
Found at i:24192239 original size:24 final size:24
Alignment explanation
Indices: 24192207--24192253 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
24192197 TTAAAGATAC
24192207 CTGGCTATGGATATAGACATATAT
1 CTGGCTATGGATATAGACATATAT
*
24192231 CTGGCTATGGATATAGTCATATA
1 CTGGCTATGGATATAGACATATA
24192254 GAGATAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (24 bp):
CTGGCTATGGATATAGACATATAT
Found at i:24192355 original size:19 final size:20
Alignment explanation
Indices: 24192331--24192369 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
24192321 TCGAACATAT
*
24192331 ATATTTTTAA-CATTTTAGA
1 ATATTTTTAATCATATTAGA
24192350 ATATTTTTAATCATATTAGA
1 ATATTTTTAATCATATTAGA
24192370 CAAATTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (20 bp):
ATATTTTTAATCATATTAGA
Found at i:24195640 original size:43 final size:43
Alignment explanation
Indices: 24195579--24195755 Score: 219
Period size: 43 Copynumber: 3.9 Consensus size: 43
24195569 ATCTTAATGT
24195579 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
*
24195622 TAAATATATATCATATAATAACTTACATAACTTATATACCTTACAAAATACA
1 TAAATATATATCATATAATAACTTAC---A---A-A-A-CTTACATAATACA
* *
24195674 TAAATATATATCATATCATAACTTACACAACTTACATAATACA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
* * *
24195717 TAAATATATATCATATCATAACTTACATACCTTACATAA
1 TAAATATATATCATATAATAACTTACAAAACTTACATAA
24195756 ATGTATATCA
Statistics
Matches: 119, Mismatches: 6, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
43 75 0.63
44 1 0.01
45 1 0.01
46 1 0.01
49 2 0.02
50 1 0.01
51 1 0.01
52 37 0.31
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (43 bp):
TAAATATATATCATATAATAACTTACAAAACTTACATAATACA
Found at i:24195651 original size:9 final size:9
Alignment explanation
Indices: 24195639--24195805 Score: 71
Period size: 9 Copynumber: 19.0 Consensus size: 9
24195629 ATATCATATA
24195639 ATAACTTAC
1 ATAACTTAC
*
24195648 ATAACTTAT
1 ATAACTTAC
*
24195657 ATACCTTAC
1 ATAACTTAC
*
24195666 A-AA-ATAC
1 ATAACTTAC
* *
24195673 ATAA-ATAT
1 ATAACTTAC
* *
24195681 ATATCATATC
1 ATAACTTA-C
24195691 ATAACTTAC
1 ATAACTTAC
*
24195700 ACAACTTAC
1 ATAACTTAC
24195709 ATAA--TAC
1 ATAACTTAC
* *
24195716 ATAA-ATAT
1 ATAACTTAC
* *
24195724 ATATCATATC
1 ATAACTTA-C
24195734 ATAACTTAC
1 ATAACTTAC
*
24195743 ATACCTTAC
1 ATAACTTAC
* *
24195752 ATAAATGTAT
1 ATAACT-TAC
* *
24195762 ATCA-TAAC
1 ATAACTTAC
*
24195770 ATAACTTAG
1 ATAACTTAC
24195779 ATAACTTAC
1 ATAACTTAC
24195788 A-AAGCTTAC
1 ATAA-CTTAC
*
24195797 TTAACTTAC
1 ATAACTTAC
24195806 GTAATACATA
Statistics
Matches: 119, Mismatches: 29, Indels: 20
0.71 0.17 0.12
Matches are distributed among these distances:
7 11 0.09
8 20 0.17
9 69 0.58
10 19 0.16
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:24195652 original size:52 final size:52
Alignment explanation
Indices: 24195596--24195752 Score: 179
Period size: 52 Copynumber: 3.2 Consensus size: 52
24195586 ATATCATATA
*
24195596 ATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAACTTAC
1 ATAACTTACAAAACTTACAAAATACATAAATATATATCATATAATAACTTAC
* * *
24195648 ATAACTTATATACCTTACAAAATACATAAATATATATC-----AT-A--T-C
1 ATAACTTACAAAACTTACAAAATACATAAATATATATCATATAATAACTTAC
* * *
24195691 ATAACTTACACAACTTACATAATACATAAATATATATCATATCATAACTTAC
1 ATAACTTACAAAACTTACAAAATACATAAATATATATCATATAATAACTTAC
*
24195743 ATACCTTACA
1 ATAACTTACA
24195753 TAAATGTATA
Statistics
Matches: 87, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
43 35 0.40
44 1 0.01
46 1 0.01
47 2 0.02
48 2 0.02
49 1 0.01
51 1 0.01
52 44 0.51
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (52 bp):
ATAACTTACAAAACTTACAAAATACATAAATATATATCATATAATAACTTAC
Found at i:24195706 original size:95 final size:95
Alignment explanation
Indices: 24195579--24195750 Score: 308
Period size: 95 Copynumber: 1.8 Consensus size: 95
24195569 ATCTTAATGT
24195579 TAAATATATATCATATAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAAC
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAAC
24195644 TTACATAACTTATATACCTTACAAAATACA
66 TTACATAACTTATATACCTTACAAAATACA
* * *
24195674 TAAATATATATCATATCATAACTTACACAACTTACATAATACATAAATATATATCATATCATAAC
1 TAAATATATATCATATAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAAC
*
24195739 TTACATACCTTA
66 TTACATAACTTA
24195751 CATAAATGTA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 73 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.34
Consensus pattern (95 bp):
TAAATATATATCATATAATAACTTACAAAACTTACATAATACATAAATATATATCATATAATAAC
TTACATAACTTATATACCTTACAAAATACA
Found at i:24195711 original size:36 final size:36
Alignment explanation
Indices: 24195670--24195788 Score: 130
Period size: 36 Copynumber: 3.1 Consensus size: 36
24195660 CCTTACAAAA
*
24195670 TACATAAATATATATCATATCATAACTTACACAACTTACAT
1 TACATAAATATATATCATATCATAACTT--AC-A-TAAC-T
*
24195711 AATACATAAATATATATCATATCATAACTTACATACCT
1 --TACATAAATATATATCATATCATAACTTACATAACT
* * *
24195749 TACATAAATGTATATCATAACATAACTTAGATAACT
1 TACATAAATATATATCATATCATAACTTACATAACT
24195785 TACA
1 TACA
24195789 AAGCTTACTT
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
36 36 0.51
38 1 0.01
39 2 0.03
40 1 0.01
41 2 0.03
43 28 0.40
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.34
Consensus pattern (36 bp):
TACATAAATATATATCATATCATAACTTACATAACT
Found at i:24199594 original size:13 final size:14
Alignment explanation
Indices: 24199578--24199606 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24199568 TTCTAAATAT
24199578 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
24199591 TTATAATTGTTTAA
1 TTATAATTGTTTAA
24199605 TT
1 TT
24199607 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:24200063 original size:18 final size:19
Alignment explanation
Indices: 24200020--24200127 Score: 64
Period size: 21 Copynumber: 5.6 Consensus size: 19
24200010 AACTTAGAGC
* *
24200020 GGAGGCAGCAGAGAGGGAG
1 GGAGGCAGCAGACAGCGAG
*
24200039 GTA-GCAGCAG-CAGCGAG
1 GGAGGCAGCAGACAGCGAG
*
24200056 GGAGGCAGCGACAACAGCGAG
1 GGAGGCAGC-A-GACAGCGAG
*
24200077 AGAGGCAG-AGGCACGAGCGAG
1 GGAGGCAGCA-G-AC-AGCGAG
*
24200098 GGAGGCAG-AGGCAGC-AG
1 GGAGGCAGCAGACAGCGAG
*
24200115 CGATGGCAGCAGA
1 GGA-GGCAGCAGA
24200128 GCAGAGCAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
17 11 0.16
18 20 0.29
19 7 0.10
20 3 0.04
21 28 0.41
ACGTcount: A:0.31, C:0.19, G:0.47, T:0.02
Consensus pattern (19 bp):
GGAGGCAGCAGACAGCGAG
Found at i:24200106 original size:21 final size:20
Alignment explanation
Indices: 24200021--24200117 Score: 88
Period size: 21 Copynumber: 4.6 Consensus size: 20
24200011 ACTTAGAGCG
* *
24200021 GAGGCAGCAGAGAGGGAGGTA
1 GAGGCA-CAGCGAGGGAGGCA
24200042 GCA-GCAGCAGCGAGGGAGGCA
1 G-AGGCA-CAGCGAGGGAGGCA
* * *
24200063 GCGACAACAGCGAGAGAGGCA
1 GAGGC-ACAGCGAGGGAGGCA
24200084 GAGGCACGAGCGAGGGAGGCA
1 GAGGCAC-AGCGAGGGAGGCA
24200105 GAGGCAGCAGCGA
1 GAGGCA-CAGCGA
24200118 TGGCAGCAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
20 2 0.03
21 58 0.92
22 3 0.05
ACGTcount: A:0.32, C:0.20, G:0.47, T:0.01
Consensus pattern (20 bp):
GAGGCACAGCGAGGGAGGCA
Found at i:24200572 original size:43 final size:43
Alignment explanation
Indices: 24200485--24200664 Score: 125
Period size: 43 Copynumber: 4.2 Consensus size: 43
24200475 TCTGTCAAAA
*** * *
24200485 TTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAAGTAATGGCTT
1 TTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAAGCAATGACTT
*
24200528 TTAGCGGCGTTTGCAAAAAAAGTGCCGCTAAAAGCCAA-GACTT
1 TTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAAG-CAATGACTT
* * * * * *
24200571 TTAGCGGTGCTTT-TACCACAAA-CGCCGCTAAAAAGCCATTACTT
1 TTAGCGGCG-TTTGCA-AAAAAAGCGCCGCT-AAAAGCAATGACTT
* * ** * *
24200615 TTAGCAGCGCTTTTCCCACAAA-CGCCGCTAAAAGCCATGACTT
1 TTAGCGGCG-TTTGCAAAAAAAGCGCCGCTAAAAGCAATGACTT
24200658 TTAGCGG
1 TTAGCGG
24200665 TGCTTTTTTA
Statistics
Matches: 112, Mismatches: 19, Indels: 12
0.78 0.13 0.08
Matches are distributed among these distances:
43 70 0.62
44 42 0.38
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (43 bp):
TTAGCGGCGTTTGCAAAAAAAGCGCCGCTAAAAGCAATGACTT
Found at i:24200670 original size:43 final size:43
Alignment explanation
Indices: 24200551--24200671 Score: 188
Period size: 44 Copynumber: 2.8 Consensus size: 43
24200541 CAAAAAAAGT
*
24200551 GCCGCTAAAAGCCAAGACTTTTAGCGGTGCTTTTACCACAAAC
1 GCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTTACCACAAAC
* * * *
24200594 GCCGCTAAAAAGCCATTACTTTTAGCAGCGCTTTTCCCACAAAC
1 GCCGCT-AAAAGCCATGACTTTTAGCGGTGCTTTTACCACAAAC
24200638 GCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTT
1 GCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTT
24200672 TTAAATAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 31 0.45
44 38 0.55
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (43 bp):
GCCGCTAAAAGCCATGACTTTTAGCGGTGCTTTTACCACAAAC
Found at i:24208043 original size:55 final size:55
Alignment explanation
Indices: 24207984--24208087 Score: 147
Period size: 55 Copynumber: 1.9 Consensus size: 55
24207974 ACGGGCATGT
*
24207984 GACACGCCCGTGCCTG-GAAACCGTGGCCAAACCTGACAAATTAACACGGACGTGC
1 GACACACCCGTGCC-GAGAAACCGTGGCCAAACCTGACAAATTAACACGGACGTGC
* * * *
24208039 GACACACCCGTGCCGAGCAACCGTGGGCAAACCTGTCAGATTAACACGG
1 GACACACCCGTGCCGAGAAACCGTGGCCAAACCTGACAAATTAACACGG
24208088 GCGTAGGCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 1 0.02
55 42 0.98
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (55 bp):
GACACACCCGTGCCGAGAAACCGTGGCCAAACCTGACAAATTAACACGGACGTGC
Found at i:24209774 original size:15 final size:15
Alignment explanation
Indices: 24209754--24209784 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24209744 ATCAGTATCG
24209754 AATTGTTATTCTAGA
1 AATTGTTATTCTAGA
24209769 AATTGTTATTCTAGA
1 AATTGTTATTCTAGA
24209784 A
1 A
24209785 CTTGCTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.45
Consensus pattern (15 bp):
AATTGTTATTCTAGA
Found at i:24210664 original size:32 final size:32
Alignment explanation
Indices: 24210628--24210692 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
24210618 CAAAAAAAAT
*
24210628 AAGCTTTCAAAAGCTTAGTACGCCATATACAA
1 AAGCTTTCAAAAGCTTAGTAAGCCATATACAA
24210660 AAGCTTTCAAAAGCTTAGTAAGCCATATACAA
1 AAGCTTTCAAAAGCTTAGTAAGCCATATACAA
24210692 A
1 A
24210693 TAAACTTATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (32 bp):
AAGCTTTCAAAAGCTTAGTAAGCCATATACAA
Found at i:24211106 original size:42 final size:43
Alignment explanation
Indices: 24210998--24211112 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
24210988 AGCTCATACA
* * *
24210998 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACATGAAACCAAATATAG
* * *
24211041 ATGCC-ACTGTCCTAGGCAG-GGTCTTACATGAAACCAAATA-AG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACATGAAACCAAATATAG
24211083 ATGCCAACATCCCAGACGTGGTCTTACATG
1 ATGCCAACATCCCAGACGTGGTCTTACATG
24211113 TAAATCATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACATGAAACCAAATATAG
Found at i:24252856 original size:49 final size:49
Alignment explanation
Indices: 24252803--24253034 Score: 302
Period size: 49 Copynumber: 4.7 Consensus size: 49
24252793 CTAGTACGCA
*
24252803 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * * * *
24252852 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * *
24252902 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* * *
24252953 TAGTAGCCTGCACTTAGTACTAGACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
*
24253002 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
24253035 TCACAATAGA
Statistics
Matches: 156, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 71 0.46
50 48 0.31
51 37 0.24
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:24253031 original size:100 final size:99
Alignment explanation
Indices: 24252803--24253034 Score: 313
Period size: 100 Copynumber: 2.3 Consensus size: 99
24252793 CTAGTACGCA
* * * * *
24252803 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
* * *
24252868 GTACTACACACGTGACCTAACTATCTGATACATG
66 GTACTACACACGCGACCTAACTATCCGATACACG
* *
24252902 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACT
* * * *
24252967 TAGTACTAGACATGCGACC-AATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACTATCCGATACACG
24253002 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
24253035 TCACAATAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 30 0.26
100 46 0.40
101 40 0.34
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACTATCCGATACACG
Found at i:24256465 original size:40 final size:39
Alignment explanation
Indices: 24256363--24256541 Score: 265
Period size: 40 Copynumber: 4.6 Consensus size: 39
24256353 ATGATAACAA
* *
24256363 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-ACCG
*
24256403 GGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCG
*
24256442 GGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAACCG
24256482 GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCG
24256521 GGCT-AGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
24256542 AGCAAGTAGT
Statistics
Matches: 131, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
38 17 0.13
39 49 0.37
40 65 0.50
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAACCG
Found at i:24256514 original size:79 final size:79
Alignment explanation
Indices: 24256363--24256541 Score: 274
Period size: 79 Copynumber: 2.3 Consensus size: 79
24256353 ATGATAACAA
* *
24256363 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCG
*
24256428 AGCTACTATATCCG
66 AGCTACTATAACCG
* *
24256442 GGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGTG
24256506 CGAG-TACTATAACCG
64 CGAGCTACTATAACCG
24256521 GGCT-AGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
24256542 AGCAAGTAGT
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 18 0.20
79 54 0.59
80 20 0.22
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGTGCG
AGCTACTATAACCG
Found at i:24259014 original size:15 final size:15
Alignment explanation
Indices: 24258996--24259028 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24258986 GAAGCCCAGA
24258996 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
24259011 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
24259026 ATA
1 ATA
24259029 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:24262290 original size:49 final size:49
Alignment explanation
Indices: 24262129--24262311 Score: 222
Period size: 49 Copynumber: 3.7 Consensus size: 49
24262119 CTAGTACGCA
** *
24262129 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
24262179 TAGTAGCCTGTACTTAGTACTACACACGTGATCAAGGTTATCTGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAA--TTATCTGGTACACG
* * * * *
24262230 TAGTAGCCTGCACTTAGTACTAGACATGCGACCAATTACCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
*
24262279 TAGTAGCCTGCACTTAGTACTACACACATGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
24262312 TCACAATAGA
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
49 41 0.37
50 31 0.28
51 39 0.35
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:24265960 original size:33 final size:34
Alignment explanation
Indices: 24265916--24266012 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 34
24265906 GCATTACACT
* *
24265916 ATTACTATATAGGGCTAAGGCCCAGATTGTACTG
1 ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
* * * *
24265950 -TTACTGTATAGGGCCAAGTCGCAGACTGTATTG
1 ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
* * * *
24265983 ATTATTGAATAAGGCTCAGGCCCAGACTGT
1 ATTACTGTATAGGGCTAAGGCCCAGACTGT
24266013 TACTACAAGC
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
33 27 0.55
34 22 0.45
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (34 bp):
ATTACTGTATAGGGCTAAGGCCCAGACTGTACTG
Found at i:24269678 original size:47 final size:47
Alignment explanation
Indices: 24269624--24269950 Score: 492
Period size: 47 Copynumber: 7.0 Consensus size: 47
24269614 TTAGGATTTT
** *
24269624 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
24269671 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24269718 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
24269765 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
24269812 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
24269859 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
24269906 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
24269951 TAGTGTGAAA
Statistics
Matches: 254, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 254 1.00
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:24269726 original size:25 final size:25
Alignment explanation
Indices: 24269651--24269726 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
24269641 GTGTATATAT
24269651 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
24269676 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
24269698 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
24269723 GTGA
1 GTGA
24269727 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:24269798 original size:25 final size:25
Alignment explanation
Indices: 24269764--24269843 Score: 73
Period size: 25 Copynumber: 3.3 Consensus size: 25
24269754 CCGAATGGCC
24269764 TATGTGATGAATGTGAACATGCATA
1 TATGTGATGAATGTGAACATGCATA
*
24269789 TATGTGATG-A-G-GCAGA-ATGGC-CA
1 TATGTGATGAATGTG-A-ACAT-GCATA
*
24269812 -ATGTGATGAATGTGAGCATGCATA
1 TATGTGATGAATGTGAACATGCATA
24269836 TATGTGAT
1 TATGTGAT
24269844 AAGGCCGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 18
0.67 0.05 0.28
Matches are distributed among these distances:
22 9 0.21
23 8 0.19
24 9 0.21
25 17 0.40
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (25 bp):
TATGTGATGAATGTGAACATGCATA
Found at i:24270293 original size:37 final size:37
Alignment explanation
Indices: 24270113--24270301 Score: 270
Period size: 37 Copynumber: 5.1 Consensus size: 37
24270103 GGAAATATAT
* * * *
24270113 TCCGGGTGAGACCCGATGACTACATGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
24270150 TTCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
24270187 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
24270224 TCCAGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
24270261 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
24270298 TCCG
1 TCCG
24270302 AGCTAAAGGT
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 135 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:24274924 original size:50 final size:51
Alignment explanation
Indices: 24274862--24274991 Score: 165
Period size: 51 Copynumber: 2.6 Consensus size: 51
24274852 ATACTCAGTT
*
24274862 GCCTGCACTTAGTACTACAAACGTGACCTAA-CCATCT-GATACATGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCTAAGCCAT-TGGATACATGTAGTA
* * * * ** *
24274912 GCCTACACTTAGTACTACACATGTGATCGAAGTTATTGGGTACATGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCTAAGCCATTGGATACATGTAGTA
24274963 GCCTGCACTTAGTACTACACACGTGACCT
1 GCCTGCACTTAGTACTACACACGTGACCT
24274992 CACAATAGGT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 27 0.41
51 39 0.59
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (51 bp):
GCCTGCACTTAGTACTACACACGTGACCTAAGCCATTGGATACATGTAGTA
Found at i:24279571 original size:49 final size:49
Alignment explanation
Indices: 24279518--24279690 Score: 229
Period size: 49 Copynumber: 3.5 Consensus size: 49
24279508 CTGGTACGCA
24279518 TAGTAGCCTGCACTTAGTACTACACATGCGATGAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATGAATTATCCGGTACACG
* * * * * *
24279567 TAGTAGCTTGCACTTAGTACTACACACGTGATTGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-TGAA-TTATCCGGTACACG
** *
24279618 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGATGAATTATCCGGTACACG
* *
24279667 TAGTAGCCTGTAGTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
24279691 AATGTGACCT
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
49 60 0.57
50 6 0.06
51 39 0.37
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGATGAATTATCCGGTACACG
Found at i:24279648 original size:100 final size:100
Alignment explanation
Indices: 24279505--24279690 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
24279495 TAGCCAAAGC
* ** *
24279505 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGATGAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
*
24279570 TAGCTTGCACTTAGTACTACACACGTGATTGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATTGAAGT
24279605 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
* *
24279670 TAGCCTGTAGTTAGTACTACA
66 TAGCCTGCACTTAGTACTACA
24279691 AATGTGACCT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
TAGCCTGCACTTAGTACTACACACGTGATTGAAGT
Found at i:24285101 original size:13 final size:13
Alignment explanation
Indices: 24285083--24285107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24285073 GGCTATATTT
24285083 TCACACGGCCGTA
1 TCACACGGCCGTA
24285096 TCACACGGCCGT
1 TCACACGGCCGT
24285108 GTTGCCTCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
TCACACGGCCGTA
Found at i:24296333 original size:55 final size:53
Alignment explanation
Indices: 24296256--24296477 Score: 204
Period size: 55 Copynumber: 4.2 Consensus size: 53
24296246 GGATACCTAA
* * *
24296256 TAAGACCATGACAAGGCGTGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATG
1 TAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTCTAAGGCAAGGATACCATG
* ** * *
24296311 TAAGACCATGTCAAGAAATGGCATTTATAAGTTACTATAAGGCAAAGG-TTCCATG
1 TAAGACCATGTCAAGACATGGCATTGGTAAGTT--TCTAAGGC-AAGGATACCATG
* * * *
24296366 TAAGACCATGCCAAGGCATCGCATTGGTGAG-TTCATAAGGCAAGGATACCATG
1 TAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-TAAGGCAAGGATACCATG
* * * *
24296419 TAAGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---AAGGATACCACG
1 TAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGCAAGGATACCATG
24296468 TAAGACCATG
1 TAAGACCATG
24296478 AAAATTCATG
Statistics
Matches: 136, Mismatches: 25, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
49 21 0.15
52 7 0.05
53 39 0.29
54 10 0.07
55 55 0.40
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (53 bp):
TAAGACCATGTCAAGACATGGCATTGGTAAGTTTCTAAGGCAAGGATACCATG
Found at i:24296593 original size:23 final size:24
Alignment explanation
Indices: 24296567--24296611 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
24296557 AATGTAAGGT
*
24296567 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
24296590 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
24296612 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:24298672 original size:13 final size:13
Alignment explanation
Indices: 24298654--24298687 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
24298644 ACCTCATTGG
24298654 ATTAAATTATTAA
1 ATTAAATTATTAA
24298667 ATTAAAATTATTAA
1 ATT-AAATTATTAA
24298681 A-TAAATT
1 ATTAAATT
24298688 GAAATTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:24298753 original size:23 final size:23
Alignment explanation
Indices: 24298724--24298768 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
24298714 GGGTCAGTCA
24298724 AAAAAAGGTATGTTAATTAATCC
1 AAAAAAGGTATGTTAATTAATCC
24298747 AAAAAAGGTATGTTAATTAATC
1 AAAAAAGGTATGTTAATTAATC
24298769 AAAGGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.07, G:0.13, T:0.31
Consensus pattern (23 bp):
AAAAAAGGTATGTTAATTAATCC
Found at i:24306968 original size:212 final size:210
Alignment explanation
Indices: 24306343--24307147 Score: 1362
Period size: 210 Copynumber: 3.8 Consensus size: 210
24306333 AGGCCGCAAT
* *
24306343 ATAGCAGATCTCACCT-TCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTT
1 ATAGCAGATCTCACCTCT-AGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTC
*
24306407 TGTATTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
65 TGTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCA
* *
24306472 AATCTAAGATAATTTGTCGTCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCATCTTCACTTT
130 AATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTT
24306537 GATGGAAGGCAGACAC
195 GATGGAAGGCAGACAC
24306553 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
* * *
24306618 GTACTCGACAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCATGTGTTTACGATAAAGCAA
66 GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
* * *
24306683 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAAAAAATCAAAGCCTGGCATCTTCACTTTG
131 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
*
24306748 ATGGAAGGCAGGCAC
196 ATGGAAGGCAGACAC
* * *
24306763 ATAGCAGATCTCACCTTTAGACGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
* * * *
24306828 GTATTCAACTGGGAGCAGATCTAAAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 GTACTCGACGGGGAGCAGATC--AAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGC
24306893 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCAC-T
129 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTT
*
24306957 CGAATGGAAGGCAGACAC
194 TG-ATGGAAGGCAGACAC
24306975 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
*
24307040 GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGAAA
66 GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
*
24307105 ATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATC
131 ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATC
24307148 AAAGAAGCAG
Statistics
Matches: 556, Mismatches: 35, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
210 360 0.65
211 3 0.01
212 193 0.35
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (210 bp):
ATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
GTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
ATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
ATGGAAGGCAGACAC
Found at i:24307129 original size:422 final size:420
Alignment explanation
Indices: 24306343--24307151 Score: 1431
Period size: 422 Copynumber: 1.9 Consensus size: 420
24306333 AGGCCGCAAT
* * *
24306343 ATAGCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTTT
1 ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
* *
24306408 GTATTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
66 GTATTCAACGGGGAGCAGATCAAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
* *
24306473 ATCTAAGATAATTTGTCGTCTCTGTATTGTTAGAGAACAAATCGAAGTCTGGCATCTTCACTTTG
131 ATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTCG
24306538 ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
196 ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
*
24306603 AGATCTTATCTCTCTGTACTCGACAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCATGTG
261 AGATCTTATCTCTCTGTACTCGACAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTG
* *
24306668 TTTACGATAAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAAAAAATCAAAGCCT
326 TTTACGATAAAGAAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATCAAAGCCT
24306733 GGCATCTTCACTTTGATGGAAGGCAGGCAC
391 GGCATCTTCACTTTGATGGAAGGCAGGCAC
* *
24306763 ATAGCAGATCTCACCTTTAGACGTTTACGCTGAAGTAGATCCAAGATGACAGATCTTATCTCTCT
1 ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
*
24306828 GTATTCAACTGGGAGCAGATCTAAAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGC
66 GTATTCAACGGGGAGCAGATC--AAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGC
*
24306893 AAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCAC-T
129 AAATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTT
24306957 CGAATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGAT
194 CG-ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGAT
*
24307022 GACAGATCTTATCTCTCTGTACTCGACGGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCAC
258 GACAGATCTTATCTCTCTGTACTCGACAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCAC
* *
24307087 GTGTTTACGATGAAGAAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCAAAG
323 GTGTTTACGATAAAGAAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATCAAAG
24307152 AAGCAGATTT
Statistics
Matches: 369, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
420 79 0.21
421 2 0.01
422 288 0.78
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (420 bp):
ATAGCAGATCTCACCTTCAGACGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCT
GTATTCAACGGGGAGCAGATCAAAGATATAACTGATTTGGCTTTCACGTGTTTACGATGAAGCAA
ATCTAAGATAATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTTCACTTCG
ATGGAAGGCAGACACATAGCAGATCTCACCTCTAGATGTTTACGCTGAAGCAGATCCAAGATGAC
AGATCTTATCTCTCTGTACTCGACAGGGAGCAGATCAAAGATATAGCTGATTTGGCTTTCACGTG
TTTACGATAAAGAAAATCTAAGATGATTTGTCATCTCTGTATTGTCAGAGAAAAAATCAAAGCCT
GGCATCTTCACTTTGATGGAAGGCAGGCAC
Found at i:24308671 original size:23 final size:23
Alignment explanation
Indices: 24308628--24308676 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
24308618 AATTTAGCCC
* *
24308628 TATATATTTATTTTTATTATTAT
1 TATATATATATTTATATTATTAT
*
24308651 TATATATATATTTCATA-TATTGT
1 TATATATATATTT-ATATTATTAT
24308674 TAT
1 TAT
24308677 TTGTTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (23 bp):
TATATATATATTTATATTATTAT
Found at i:24308730 original size:23 final size:21
Alignment explanation
Indices: 24308704--24308759 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 21
24308694 CTTGCTTTTA
24308704 TATTATATATTGTAAGATTATTT
1 TATTATATATT-TAAGATTA-TT
*
24308727 TATTATATATATTAATATTATT
1 TATTATATAT-TTAAGATTATT
*
24308749 TATTATCTATT
1 TATTATATATT
24308760 ATTTTTCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.03
22 11 0.37
23 17 0.57
24 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (21 bp):
TATTATATATTTAAGATTATT
Found at i:24308754 original size:25 final size:25
Alignment explanation
Indices: 24308700--24308762 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 25
24308690 TAACCTTGCT
24308700 TTTA-TATTATATATTGTAAGATTA
1 TTTATTATTATATATTGTAAGATTA
*
24308724 -TT-TTATTATATATAT-TAATATTA
1 TTTATTATTATATAT-TGTAAGATTA
24308747 TTTATTATCTAT-TATT
1 TTTATTAT-TATATATT
24308763 TTTCACAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
23 19 0.58
24 4 0.12
25 7 0.21
26 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (25 bp):
TTTATTATTATATATTGTAAGATTA
Found at i:24308798 original size:16 final size:16
Alignment explanation
Indices: 24308777--24308816 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
24308767 ACAAATTATT
24308777 ATTATTATTTTACATC
1 ATTATTATTTTACATC
* * *
24308793 ATTATTTTTTTATATT
1 ATTATTATTTTACATC
24308809 ATTATTAT
1 ATTATTAT
24308817 ATTTTTACTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTATTATTTTACATC
Found at i:24309520 original size:33 final size:34
Alignment explanation
Indices: 24309470--24309545 Score: 127
Period size: 33 Copynumber: 2.2 Consensus size: 34
24309460 ATTGATATTG
24309470 TATTACTCTTTTCTGTATATCATGCATTATTTAAT
1 TATTACT-TTTTCTGTATATCATGCATTATTTAAT
24309505 TATTACTTTTT-TGTATATCATGCATTATTTAAT
1 TATTACTTTTTCTGTATATCATGCATTATTTAAT
*
24309538 TACTACTT
1 TATTACTT
24309546 CATATGTTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
33 29 0.73
34 4 0.10
35 7 0.17
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (34 bp):
TATTACTTTTTCTGTATATCATGCATTATTTAAT
Found at i:24313590 original size:13 final size:14
Alignment explanation
Indices: 24313572--24313636 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
24313562 TAATATAAAT
24313572 AAAAATTAAAT-TA
1 AAAAATTAAATGTA
*
24313585 AAAAATTAGAATGTG
1 AAAAATTA-AATGTA
**
24313600 TCAAATTAGAATGT-
1 AAAAATTA-AATGTA
24313614 AAAAATTAAAT-TA
1 AAAAATTAAATGTA
*
24313627 AAAAAATAAA
1 AAAAATTAAA
24313637 AATAGCTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
12 1 0.02
13 20 0.47
14 9 0.21
15 13 0.30
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.28
Consensus pattern (14 bp):
AAAAATTAAATGTA
Found at i:24316400 original size:36 final size:36
Alignment explanation
Indices: 24316331--24316400 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 36
24316321 TCGAAATTTT
*
24316331 TTTTTACATATATTAATAAATTTATATTTTAAATTG
1 TTTTTACATATATTAATAAATTTATATTATAAATTG
24316367 TTTTTACATATATTGCAAT-AATTTAT-TTATAAAT
1 TTTTTACATATATT--AATAAATTTATATTATAAAT
24316401 AAATAAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 21 0.68
37 7 0.23
38 3 0.10
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (36 bp):
TTTTTACATATATTAATAAATTTATATTATAAATTG
Found at i:24317694 original size:32 final size:31
Alignment explanation
Indices: 24317609--24317701 Score: 87
Period size: 32 Copynumber: 2.9 Consensus size: 31
24317599 TTGTCATTGT
* *
24317609 CAATCATTTCAATATCCAACAACCTTAAAACA
1 CAATAATTTCAATATCCAACAA-ATTAAAACA
* * ** *
24317641 TAATAAATTCAATATGTAACAAATTCAAGACA
1 CAATAATTTCAATATCCAACAAATT-AAAACA
* *
24317673 CAATAATTTCAAAATCCAACAAACTAAAA
1 CAATAATTTCAATATCCAACAAATTAAAA
24317702 TTTCAATATC
Statistics
Matches: 46, Mismatches: 14, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
31 5 0.11
32 41 0.89
ACGTcount: A:0.53, C:0.20, G:0.02, T:0.25
Consensus pattern (31 bp):
CAATAATTTCAATATCCAACAAATTAAAACA
Found at i:24321833 original size:24 final size:23
Alignment explanation
Indices: 24321804--24321855 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
24321794 CCTTAGAAAG
24321804 AGAGATTTGCATTTGCCTGAGAA
1 AGAGATTTGCATTTGCCTGAGAA
*
24321827 ATGAGATTTGCCTTTGCCTGAGAA
1 A-GAGATTTGCATTTGCCTGAGAA
24321851 AGAGA
1 AGAGA
24321856 GAAAAAGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 5 0.19
24 22 0.81
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (23 bp):
AGAGATTTGCATTTGCCTGAGAA
Found at i:24332721 original size:31 final size:31
Alignment explanation
Indices: 24332678--24332741 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
24332668 CCTTTTCATA
24332678 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
24332709 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
24332740 TT
1 TT
24332742 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:24333010 original size:23 final size:24
Alignment explanation
Indices: 24332934--24333053 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
24332924 GCTTTATCAT
*
24332934 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
24332959 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
24332984 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24333007 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
24333031 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
24333054 GCGCTTCCTC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 24 0.27
24 34 0.38
25 25 0.28
26 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:24333041 original size:47 final size:47
Alignment explanation
Indices: 24332955--24333052 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
24332945 CCTAGCCTCT
24332955 TTTAATAACTGGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
24333003 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
24333050 TTT
1 TTT
24333053 TGCGCTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 27 0.55
48 16 0.33
49 6 0.12
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
TTTAATAACTGGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:24333125 original size:9 final size:9
Alignment explanation
Indices: 24333111--24333167 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
24333101 ATCTCGTGTG
24333111 CATATCATA
1 CATATCATA
*
24333120 CATATCATGTG
1 CATATCA--TA
24333131 CATATCATA
1 CATATCATA
* *
24333140 CATGTCATGTG
1 CATATCA--TA
24333151 CATATCATA
1 CATATCATA
24333160 CATATCAT
1 CATATCAT
24333168 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:24333130 original size:20 final size:20
Alignment explanation
Indices: 24333107--24333169 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
24333097 GAACATCTCG
24333107 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
24333127 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
24333147 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
24333167 TGT
1 TGT
24333170 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:24333234 original size:25 final size:25
Alignment explanation
Indices: 24333206--24333253 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24333196 ATATATAAAC
* * *
24333206 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
24333231 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
24333254 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:24343037 original size:20 final size:20
Alignment explanation
Indices: 24343005--24343043 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24342995 TATCACTTAT
24343005 CTCATGAAGTCAGACCACAA
1 CTCATGAAGTCAGACCACAA
*
24343025 CTCAT-AAGTTCAGATCACA
1 CTCATGAAG-TCAGACCACA
24343044 TTGTTTCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.21
Consensus pattern (20 bp):
CTCATGAAGTCAGACCACAA
Found at i:24345772 original size:43 final size:43
Alignment explanation
Indices: 24345706--24345793 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
24345696 GTGGAGGTTG
* * *
24345706 TTGTGCAGCTGGGTTAGCCCGGATATATTGAGTAATCCAGTCA
1 TTGTACAGCTGGGTTAGCCCGGATATATTGAGTAAACCAGACA
*
24345749 TTGTACAGCTGGGTTAGTCCGGATATATTGAGTAAACCAGACA
1 TTGTACAGCTGGGTTAGCCCGGATATATTGAGTAAACCAGACA
24345792 TT
1 TT
24345794 CATCATTAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TTGTACAGCTGGGTTAGCCCGGATATATTGAGTAAACCAGACA
Found at i:24356621 original size:22 final size:23
Alignment explanation
Indices: 24356583--24356625 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
24356573 CTATAAGATT
24356583 AAAAATGAAAAACGAATCAATCC
1 AAAAATGAAAAACGAATCAATCC
24356606 AAAAAT-AATAAA-GAATCAAT
1 AAAAATGAA-AAACGAATCAAT
24356626 TCATTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.65, C:0.12, G:0.07, T:0.16
Consensus pattern (23 bp):
AAAAATGAAAAACGAATCAATCC
Found at i:24361836 original size:22 final size:22
Alignment explanation
Indices: 24361806--24361850 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
24361796 AATTATATCA
* *
24361806 TTTTACAGATATTAAGTTTATT
1 TTTTACAGAAATAAAGTTTATT
*
24361828 TTTTGCAGAAATAAAGTTTATT
1 TTTTACAGAAATAAAGTTTATT
24361850 T
1 T
24361851 GGTTTATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (22 bp):
TTTTACAGAAATAAAGTTTATT
Found at i:24366781 original size:40 final size:40
Alignment explanation
Indices: 24366698--24366920 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
24366688 TTGAATGCTG
* * * * *
24366698 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
24366738 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
24366778 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
24366818 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
24366858 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
24366897 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24366921 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:24366835 original size:80 final size:79
Alignment explanation
Indices: 24366698--24366922 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
24366688 TTGAATGCTG
* * * * * *
24366698 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
24366761 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
24366778 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
24366843 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
24366858 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
24366922 G
65 G
24366923 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:24366940 original size:79 final size:80
Alignment explanation
Indices: 24366773--24366955 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
24366763 GTGCGAGATA
** *
24366773 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
24366838 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
24366853 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
24366917 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
24366932 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
24366956 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:24366940 original size:119 final size:120
Alignment explanation
Indices: 24366698--24366955 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
24366688 TTGAATGCTG
* * * * *
24366698 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
24366763 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
24366818 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
24366880 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
24366937 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24366956 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:24382088 original size:22 final size:22
Alignment explanation
Indices: 24382063--24382104 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
24382053 TTAGCATAGC
24382063 TTGTAGACTCTCTTTAATAAGT
1 TTGTAGACTCTCTTTAATAAGT
24382085 TTGTAGACTCTCTTTAATAA
1 TTGTAGACTCTCTTTAATAA
24382105 CTTTCTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (22 bp):
TTGTAGACTCTCTTTAATAAGT
Found at i:24385882 original size:21 final size:21
Alignment explanation
Indices: 24385839--24385884 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
24385829 CTCTAATATG
*
24385839 TTAGATTTTAAAAAATTATATA
1 TTAGATTTTAAAAAA-TAAATA
24385861 TTAGATTTTAAAATAA-AAATA
1 TTAGATTTTAAAA-AATAAATA
24385882 TTA
1 TTA
24385885 AAAAAAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 13 0.59
23 2 0.09
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (21 bp):
TTAGATTTTAAAAAATAAATA
Found at i:24386593 original size:20 final size:21
Alignment explanation
Indices: 24386546--24386593 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
24386536 AAAATTTACC
*
24386546 AATATAATTTCATGTATTAAA
1 AATATATTTTCATGTATTAAA
24386567 AAT-TATTTTCAT-T-TTATAA
1 AATATATTTTCATGTATTA-AA
24386586 AATATATT
1 AATATATT
24386594 ACTATATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 6 0.25
20 12 0.50
21 3 0.12
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (21 bp):
AATATATTTTCATGTATTAAA
Found at i:24390578 original size:15 final size:15
Alignment explanation
Indices: 24390558--24390587 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24390548 CTCCCCCCCC
24390558 CCCAAAAAAAAAAAG
1 CCCAAAAAAAAAAAG
*
24390573 CCCAAAAATAAAAAG
1 CCCAAAAAAAAAAAG
24390588 AAACAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.20, G:0.07, T:0.03
Consensus pattern (15 bp):
CCCAAAAAAAAAAAG
Found at i:24394090 original size:5 final size:5
Alignment explanation
Indices: 24394080--24394105 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24394070 TTAGCGCTCA
24394080 CTGAC CTGAC CTGAC CTGAC CTGAC C
1 CTGAC CTGAC CTGAC CTGAC CTGAC C
24394106 AATCCAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (5 bp):
CTGAC
Found at i:24394165 original size:5 final size:5
Alignment explanation
Indices: 24394150--24394179 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
24394140 ATCTCTATCT
24394150 TTCCC -TCCC TTCCC TTCCC TTCCC TTCCC T
1 TTCCC TTCCC TTCCC TTCCC TTCCC TTCCC T
24394180 CGCTCGCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (5 bp):
TTCCC
Found at i:24395010 original size:31 final size:30
Alignment explanation
Indices: 24394975--24395034 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
24394965 GTGAAATTTA
*
24394975 ATTA-TTTTATTAAAATAATATTTTAATTAAG
1 ATTATTTTTATT-AAATAA-ATTATAATTAAG
*
24395006 ATTATTTTTATTTAATAAATTATAATTAA
1 ATTATTTTTATTAAATAAATTATAATTAA
24395035 TAGCCTTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.38
31 9 0.35
32 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (30 bp):
ATTATTTTTATTAAATAAATTATAATTAAG
Found at i:24396423 original size:30 final size:31
Alignment explanation
Indices: 24396354--24396423 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
24396344 TTGGTAAAAC
*
24396354 GCCGCT-AAAAACAGAGCAATAGCGGCATTT
1 GCCGCTAAAAAACAGAGCAATAGCGGCACTT
* * *
24396384 GCTGCTAAAAAACAGAGCATTAGCGGCGCTT
1 GCCGCTAAAAAACAGAGCAATAGCGGCACTT
*
24396415 -CCGGTAAAA
1 GCCGCTAAAA
24396424 CACCGCTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (31 bp):
GCCGCTAAAAAACAGAGCAATAGCGGCACTT
Found at i:24396432 original size:41 final size:41
Alignment explanation
Indices: 24396387--24396475 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 41
24396377 GGCATTTGCT
*
24396387 GCTAAAAAACAGAGCATTAGCGGCGCTTCCGGTAAAACACC
1 GCTAAAAAACAGAGCATTAGCGGCACTTCCGGTAAAACACC
* * *
24396428 GCTAAAAACCAGAGCATTAGCGGCACTTTCGGTAAAACGCC
1 GCTAAAAAACAGAGCATTAGCGGCACTTCCGGTAAAACACC
24396469 GCTAAAA
1 GCTAAAA
24396476 TTCATATAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (41 bp):
GCTAAAAAACAGAGCATTAGCGGCACTTCCGGTAAAACACC
Found at i:24396559 original size:21 final size:21
Alignment explanation
Indices: 24396514--24396553 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
24396504 CAAAAAACAA
24396514 TAAACACTAATA-TATAACCCC
1 TAAACACTAA-ACTATAACCCC
24396535 TAAACACTAAACTATAACC
1 TAAACACTAAACTATAACC
24396554 TTTAAAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAACACTAAACTATAACCCC
Found at i:24402965 original size:43 final size:43
Alignment explanation
Indices: 24402835--24403056 Score: 256
Period size: 42 Copynumber: 5.3 Consensus size: 43
24402825 ATATATATGG
* *
24402835 TCTTTAGTGGCGTTTTTGGGGAAAGCGTCGCTAAAGATCATG-
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
* * *
24402877 TCTTTAGCGG-TTTTTTTGGGAAAACGTCGCTAAAGGTCATG-
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
* **
24402918 TCTTTAGCGGCGTTTTTGGGGATAGCGTTACTAAAGGTCATGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
* * *
24402961 TCTTTAGCGGTGTTTTTTGGGAAAGCGTAGCTAAAGGTCATGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
* * * *
24403004 -CTTTTAGAGGCATTTTT-GGGAAAGCGCCGCTAAAAGTCATGA
1 TC-TTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
*
24403046 CCTTTAGCGGC
1 TCTTTAGCGGC
24403057 ATTATTTATA
Statistics
Matches: 153, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
41 37 0.24
42 65 0.42
43 51 0.33
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGA
Found at i:24403037 original size:85 final size:84
Alignment explanation
Indices: 24402836--24403055 Score: 291
Period size: 85 Copynumber: 2.6 Consensus size: 84
24402826 TATATATGGT
* *
24402836 CTTTAGTGGCGTTTTTGGGGAAAGCGTCGCTAAAGATCATG-TCTTTAGCGGTTTTTTTGGGAAA
1 CTTTAGAGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGTTTTTTTGGGAAA
* *
24402900 ACGTCGCTAAAGGTCATGT
66 ACGTAGCTAAAGGTCATGA
* * **
24402919 CTTTAGCGGCGTTTTTGGGGATAGCGTTACTAAAGGTCATGATCTTTAGCGGTGTTTTTTGGGAA
1 CTTTAGAGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGT-TTTTTTGGGAA
*
24402984 AGCGTAGCTAAAGGTCATGA
65 AACGTAGCTAAAGGTCATGA
* * * *
24403004 CTTTTAGAGGCATTTTT-GGGAAAGCGCCGCTAAAAGTCATGACCTTTAGCGG
1 C-TTTAGAGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCGG
24403056 CATTATTTAT
Statistics
Matches: 118, Mismatches: 16, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
83 36 0.31
84 11 0.09
85 58 0.49
86 13 0.11
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (84 bp):
CTTTAGAGGCGTTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCGGTTTTTTTGGGAAA
ACGTAGCTAAAGGTCATGA
Found at i:24403102 original size:35 final size:35
Alignment explanation
Indices: 24403048--24403116 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
24403038 AGTCATGACC
* *
24403048 TTTAGCGGCATTATTTATAGTGGCGATTTTTGCGT
1 TTTAGCGGCATTATCTATAGCGGCGATTTTTGCGT
*
24403083 TTTAGCGGCGTTATCTATAGCGGCGATTTTTGCG
1 TTTAGCGGCATTATCTATAGCGGCGATTTTTGCG
24403117 GTATTTATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.16, C:0.14, G:0.28, T:0.42
Consensus pattern (35 bp):
TTTAGCGGCATTATCTATAGCGGCGATTTTTGCGT
Found at i:24403770 original size:15 final size:16
Alignment explanation
Indices: 24403740--24403772 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24403730 ATTTTACATG
*
24403740 ATATTTGAATAATTAA
1 ATATTTGAACAATTAA
24403756 ATATTT-AACAATTAA
1 ATATTTGAACAATTAA
24403771 AT
1 AT
24403773 TCTTGTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (16 bp):
ATATTTGAACAATTAA
Found at i:24404229 original size:21 final size:21
Alignment explanation
Indices: 24404179--24404230 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
24404169 AACTTGTGGT
** *
24404179 GCATTTTTAAAAGGAATCTAG
1 GCATTTTTGGAAGGAATATAG
*
24404200 GCATTTTTGGAAGGGATATAG
1 GCATTTTTGGAAGGAATATAG
24404221 GCATTTTTGG
1 GCATTTTTGG
24404231 CTCAATATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.37
Consensus pattern (21 bp):
GCATTTTTGGAAGGAATATAG
Found at i:24405876 original size:94 final size:94
Alignment explanation
Indices: 24405715--24405909 Score: 363
Period size: 94 Copynumber: 2.1 Consensus size: 94
24405705 ACTTTAAGAG
24405715 CTTTTTTGGACTTGATCTTGGAGAATGATTTTAGCCTTATTTCTCTAGACCAGACAAGATCCAAA
1 CTTTTTTGGACTTGATCTTGGAGAATGATTTTAGCCTTATTTCTCTAGACCAGACAAGATCCAAA
24405780 AGTAGCTTTCTTTATAACGAATTCGGCTT
66 AGTAGCTTTCTTTATAACGAATTCGGCTT
* *
24405809 CTTTTTTGGACTTGATCTTGGAGAATGATTTTAGCCTTATTTCTCTAGATCAGATAAGATCCAAA
1 CTTTTTTGGACTTGATCTTGGAGAATGATTTTAGCCTTATTTCTCTAGACCAGACAAGATCCAAA
24405874 AGTAGCTTTCTTTATAACGAATTCGGCTT
66 AGTAGCTTTCTTTATAACGAATTCGGCTT
*
24405903 TTTTTTT
1 CTTTTTT
24405910 TTTTTTAAGT
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 98 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (94 bp):
CTTTTTTGGACTTGATCTTGGAGAATGATTTTAGCCTTATTTCTCTAGACCAGACAAGATCCAAA
AGTAGCTTTCTTTATAACGAATTCGGCTT
Found at i:24406555 original size:15 final size:15
Alignment explanation
Indices: 24406519--24406555 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
24406509 GGTTTTTAAT
*
24406519 ATTTTTAGGTTTAGG
1 ATTTTTGGGTTTAGG
*
24406534 GTTTTTGGGTTTAGG
1 ATTTTTGGGTTTAGG
24406549 ATTTTTG
1 ATTTTTG
24406556 ATAAAAACTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
ATTTTTGGGTTTAGG
Found at i:24410915 original size:18 final size:17
Alignment explanation
Indices: 24410887--24410920 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24410877 TTATAATGAT
*
24410887 AAAAAATATTTTAATTA
1 AAAAAATATTTAAATTA
24410904 AAAAAATAATTTAAATT
1 AAAAAAT-ATTTAAATT
24410921 TAACTTAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAAAAATATTTAAATTA
Found at i:24418293 original size:23 final size:22
Alignment explanation
Indices: 24418257--24418331 Score: 80
Period size: 24 Copynumber: 3.3 Consensus size: 22
24418247 AACTCTATCA
24418257 AGCTGAACAGTAAGCTCATACG
1 AGCTGAACAGTAAGCTCATACG
*
24418279 AGCTGAATCAGTAAGCTCCA-ATG
1 AGCTGAA-CAGTAAGCT-CATACG
* *
24418302 AGCTAAAAACAGTAAGCTCTTACG
1 AGCT--GAACAGTAAGCTCATACG
24418326 AGCTGA
1 AGCTGA
24418332 TATATCGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
22 8 0.19
23 16 0.37
24 17 0.40
25 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.20
Consensus pattern (22 bp):
AGCTGAACAGTAAGCTCATACG
Found at i:24420915 original size:18 final size:19
Alignment explanation
Indices: 24420891--24420958 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
24420881 AAAACAGTTA
24420891 TTTTTTTCCTTTGCTTCTG
1 TTTTTTTCCTTTGCTTCTG
* *
24420910 TTTTTTTCTTTTGCTTCTA
1 TTTTTTTCCTTTGCTTCTG
*
24420929 TTCTTTTTGCTTT--TTCT-
1 TT-TTTTTCCTTTGCTTCTG
*
24420946 TTATTTTCCTTTG
1 TTTTTTTCCTTTG
24420959 AAAACGGTTC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
16 8 0.20
17 2 0.05
18 4 0.10
19 19 0.46
20 8 0.20
ACGTcount: A:0.03, C:0.18, G:0.07, T:0.72
Consensus pattern (19 bp):
TTTTTTTCCTTTGCTTCTG
Found at i:24443191 original size:20 final size:19
Alignment explanation
Indices: 24443162--24443297 Score: 102
Period size: 20 Copynumber: 7.1 Consensus size: 19
24443152 TTTTTATAAA
24443162 TTTTATTATATGTTATATTT
1 TTTTATTATAT-TTATATTT
* *
24443182 TTTTAATATATATATTATTT
1 TTTTATTATATTTA-TATTT
*
24443202 ATTCTATTATATTTATA---
1 -TTTTATTATATTTATATTT
*
24443219 TTTTATTATATGTTATATAT
1 TTTTATTATAT-TTATATTT
* *
24443239 TTTTACTATATATTATTTATT
1 TTTTATTATAT-TTATAT-TT
*
24443260 TTTTACT-TA-TTATATTAT
1 TTTTATTATATTTATATT-T
*
24443278 TTTTATTATTTTTATATTT
1 TTTTATTATATTTATATTT
24443297 T
1 T
24443298 ATCTATCATA
Statistics
Matches: 93, Mismatches: 13, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
16 10 0.11
17 6 0.06
18 12 0.13
19 5 0.05
20 41 0.44
21 19 0.20
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (19 bp):
TTTTATTATATTTATATTT
Found at i:24443217 original size:59 final size:61
Alignment explanation
Indices: 24443161--24443297 Score: 189
Period size: 57 Copynumber: 2.4 Consensus size: 61
24443151 TTTTTTATAA
24443161 ATTTTATTATATGTTATATTTTTTTAATATATA-TA-TTATTTATT-C-TATTATATTTAT
1 ATTTTATTATATGTTATATTTTTTTAATATATATTATTTATTTATTACTTATTATATTTAT
* * *
24443218 ATTTTATTATATGTTATATATTTTTACTATATATTATTTATTTTTTACTTATTATA-TTAT
1 ATTTTATTATATGTTATATTTTTTTAATATATATTATTTATTTATTACTTATTATATTTAT
*
24443278 -TTTTATTAT-TTTTATATTTT
1 ATTTTATTATATGTTATATTTT
24443298 ATCTATCATA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
57 31 0.44
58 11 0.15
59 17 0.24
60 5 0.07
61 7 0.10
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.67
Consensus pattern (61 bp):
ATTTTATTATATGTTATATTTTTTTAATATATATTATTTATTTATTACTTATTATATTTAT
Found at i:24443224 original size:25 final size:24
Alignment explanation
Indices: 24443190--24443299 Score: 75
Period size: 25 Copynumber: 4.4 Consensus size: 24
24443180 TTTTTTAATA
*
24443190 TATATATTATTTATTCTATTATATT
1 TATATTTTATTTATT-TATTATATT
*
24443215 TATATTTTATTATATGTTATATATTTT
1 TATATTTTATT-TAT-TTAT-TATATT
*
24443242 TACTATATATTATTTATTT-TT-TACT
1 TA-TAT-T-TTATTTATTTATTATATT
* *
24443267 TATTATATTA-TT-TTTATTATTTT
1 TA-TATTTTATTTATTTATTATATT
24443290 TATATTTTAT
1 TATATTTTAT
24443300 CTATCATATA
Statistics
Matches: 67, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
21 3 0.04
22 10 0.15
23 7 0.10
25 17 0.25
26 7 0.10
27 9 0.13
28 5 0.07
29 4 0.06
30 5 0.07
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (24 bp):
TATATTTTATTTATTTATTATATT
Found at i:24443236 original size:17 final size:17
Alignment explanation
Indices: 24443161--24443236 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 17
24443151 TTTTTTATAA
24443161 ATTTTATTATATGTTAT
1 ATTTTATTATATGTTAT
*
24443178 ATTTTTTTAATATATATATTATTT
1 A---TTTT-AT-TATATGTTA--T
*
24443202 ATTCTATTATAT-TTAT
1 ATTTTATTATATGTTAT
24443218 ATTTTATTATATGTTAT
1 ATTTTATTATATGTTAT
24443235 AT
1 AT
24443237 ATTTTTACTA
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
16 12 0.25
17 7 0.15
18 3 0.06
19 5 0.10
20 6 0.12
21 5 0.10
22 8 0.17
24 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTTATTATATGTTAT
Found at i:24443264 original size:41 final size:39
Alignment explanation
Indices: 24443162--24443282 Score: 117
Period size: 39 Copynumber: 3.1 Consensus size: 39
24443152 TTTTTATAAA
* * * *
24443162 TTTTATTATATGTTATAT-TTTTTTAATATATATATTAT
1 TTTTACTATATATTATTTATTTTTTATTATATATATTAT
* *
24443200 TTATT-CTAT-TA-TATTTATATTTTATTATATGTTATATAT
1 TT-TTACTATATATTATTTATTTTTTATTATAT-ATAT-TAT
24443239 TTTTACTATATATTATTTATTTTTTACTTAT-TATATTAT
1 TTTTACTATATATTATTTATTTTTTA-TTATATATATTAT
24443278 TTTTA
1 TTTTA
24443283 TTATTTTTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
36 4 0.06
37 12 0.18
38 10 0.15
39 19 0.28
40 5 0.07
41 13 0.19
42 4 0.06
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (39 bp):
TTTTACTATATATTATTTATTTTTTATTATATATATTAT
Found at i:24461873 original size:24 final size:25
Alignment explanation
Indices: 24461821--24461885 Score: 82
Period size: 24 Copynumber: 2.7 Consensus size: 25
24461811 GAATTTCCAA
*
24461821 AGCACTATGTGTGCG-GTTTAGCAT
1 AGCACTATGTGTGCGAATTTAGCAT
*
24461845 GGCACTATGTGTGCGAATTT-G-ATT
1 AGCACTATGTGTGCGAATTTAGCA-T
24461869 AGCACTATGTGTGCGAA
1 AGCACTATGTGTGCGAA
24461886 ATCGGTTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.03
24 32 0.89
25 3 0.08
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.32
Consensus pattern (25 bp):
AGCACTATGTGTGCGAATTTAGCAT
Found at i:24473448 original size:40 final size:40
Alignment explanation
Indices: 24473216--24473441 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
24473206 TTGAATGATG
* * * *
24473216 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* ***
24473256 TCCGGACTAAGAT-CCGAAGGCATTTGCATGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24473296 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24473336 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24473376 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24473417 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24473442 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.95
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24473448 original size:120 final size:120
Alignment explanation
Indices: 24473216--24473474 Score: 269
Period size: 120 Copynumber: 2.2 Consensus size: 120
24473206 TTGAATGATG
* * *
24473216 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
24473281 GCATGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GCACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
24473336 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
** * * * *
24473399 TTGTGCGAGTTATTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGCACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
24473456 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24473475 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
119 18 0.16
120 88 0.76
121 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GCACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:24480356 original size:11 final size:10
Alignment explanation
Indices: 24480324--24480369 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
24480314 CATGAGATTT
24480324 TGATAT-ACA
1 TGATATGACA
*
24480333 TGATTTGACA
1 TGATATGACA
24480343 TGATATGCACA
1 TGATATG-ACA
*
24480354 TGATATG-TA
1 TGATATGACA
24480363 TGATATG
1 TGATATG
24480370 TGCATGATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 13 0.41
10 9 0.28
11 10 0.31
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:24484314 original size:21 final size:21
Alignment explanation
Indices: 24484288--24484331 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
24484278 ACCCTCGAAA
24484288 GATTGAGGCAATTCTGGAATG
1 GATTGAGGCAATTCTGGAATG
24484309 GATTGAGGCAATTCTGGAATG
1 GATTGAGGCAATTCTGGAATG
24484330 GA
1 GA
24484332 AGTCACCGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.27
Consensus pattern (21 bp):
GATTGAGGCAATTCTGGAATG
Found at i:24488188 original size:11 final size:10
Alignment explanation
Indices: 24488156--24488201 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
24488146 CATGAGATTT
24488156 TGATAT-ACA
1 TGATATGACA
*
24488165 TGATTTGACA
1 TGATATGACA
24488175 TGATATGCACA
1 TGATATG-ACA
*
24488186 TGATATG-TA
1 TGATATGACA
24488195 TGATATG
1 TGATATG
24488202 CGCATGAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
9 13 0.41
10 9 0.28
11 10 0.31
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.37
Consensus pattern (10 bp):
TGATATGACA
Found at i:24490860 original size:31 final size:31
Alignment explanation
Indices: 24490825--24490887 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
24490815 AAGCAAACAT
24490825 AAAACATCATTTGCATAATCATCACCAAGAC
1 AAAACATCATTTGCATAATCATCACCAAGAC
24490856 AAAACATCATTTGCATAATCATCACCAAGAC
1 AAAACATCATTTGCATAATCATCACCAAGAC
24490887 A
1 A
24490888 TTCATATCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.25, G:0.06, T:0.22
Consensus pattern (31 bp):
AAAACATCATTTGCATAATCATCACCAAGAC
Found at i:24491300 original size:93 final size:93
Alignment explanation
Indices: 24491141--24491312 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
24491131 GCCCATAAGT
* * *
24491141 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24491206 CGAGTTCGGATGCCTAGTTACTTCTCAC
66 CGAGTTCGGATGCCTAGTTACTTCTCAC
* * *
24491234 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24491299 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
24491313 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACTTCTCAC
Found at i:24491308 original size:46 final size:46
Alignment explanation
Indices: 24491133--24491308 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
24491123 TGTAACCCGC
* * * * *
24491133 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
24491179 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTAC-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
24491228 TC-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
24491272 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
24491309 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
44 3 0.03
45 2 0.02
46 62 0.58
47 29 0.27
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:24491327 original size:46 final size:46
Alignment explanation
Indices: 24491184--24491327 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
24491174 CGCATCCATG
* * *
24491184 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACTTCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTA--TCCC
* * *
24491232 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATT--ATCC--C
*
24491277 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCC
24491323 AGTGA
1 AGTGA
24491328 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
43 5 0.06
45 2 0.03
46 34 0.44
47 29 0.37
48 5 0.06
50 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAATTATCCC
Found at i:24502574 original size:10 final size:10
Alignment explanation
Indices: 24502559--24502585 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
24502549 TGATCACACG
24502559 GGCGTGTCTA
1 GGCGTGTCTA
24502569 GGCGTGTCTA
1 GGCGTGTCTA
24502579 GGCGTGT
1 GGCGTGT
24502586 GTAAGACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.19, G:0.44, T:0.30
Consensus pattern (10 bp):
GGCGTGTCTA
Found at i:24507340 original size:31 final size:31
Alignment explanation
Indices: 24507264--24507337 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
24507254 TCAAGTTATC
24507264 TTAAATATTAAAATAAAAATAAAAATTTAGAA
1 TTAAATA-TAAAATAAAAATAAAAATTTAGAA
*
24507296 TCAAA-ACTAAAATAAATAATAAAAA-TTAG-A
1 TTAAATA-TAAAATAAA-AATAAAAATTTAGAA
24507326 TTAAATATAAAA
1 TTAAATATAAAA
24507338 ATATCAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 10 0.27
31 15 0.41
32 12 0.32
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (31 bp):
TTAAATATAAAATAAAAATAAAAATTTAGAA
Found at i:24509993 original size:46 final size:46
Alignment explanation
Indices: 24509939--24510113 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
24509929 GATGGTTGAG
*
24509939 CGTCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATAGATGCAAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAA
* * * *
24509985 TGTCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAGATGTAACTA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--A
* * * *
24510030 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA
1 --CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAA
* *
24510078 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24510114 GGGGAGGGTT
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 1 0.01
46 60 0.57
47 28 0.27
48 1 0.01
49 1 0.01
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAA
Found at i:24521664 original size:16 final size:18
Alignment explanation
Indices: 24521643--24521675 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
24521633 CATACTAGCT
24521643 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
24521659 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
24521676 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:24522316 original size:45 final size:45
Alignment explanation
Indices: 24522205--24522421 Score: 280
Period size: 45 Copynumber: 4.9 Consensus size: 45
24522195 CCGAATTCAT
* *
24522205 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGT-ATC
* * *
24522247 TCGCTGACATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
* * * *
24522292 TCACTGGTATTATAGCCTGCTAGGCACGAAGGCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
* *
24522337 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
* *
24522382 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATA
24522422 TTACTATACG
Statistics
Matches: 153, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
42 8 0.05
43 17 0.11
44 5 0.03
45 122 0.80
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCCGAATAGTATC
Found at i:24523283 original size:47 final size:47
Alignment explanation
Indices: 24523227--24523369 Score: 250
Period size: 47 Copynumber: 3.0 Consensus size: 47
24523217 AAAATTTTAT
* * *
24523227 TTAACTAAGTAACTTATCCGGAAATAATAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
24523274 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
*
24523321 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTAAACAAGC
1 TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
24523368 TT
1 TT
24523370 TAAATTCAAC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.27
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGAAAATATTAAGAGCAAATTTAACAAGC
Found at i:24524649 original size:20 final size:20
Alignment explanation
Indices: 24524626--24524673 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
24524616 TTGTATTTCA
24524626 TTTTTATTT-GTTATCAATG
1 TTTTTATTTAGTTATCAATG
*
24524645 TTTTTATTTATTTATCAATG
1 TTTTTATTTAGTTATCAATG
24524665 TTTTT-TTTA
1 TTTTTATTTA
24524674 AATTTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.69
Consensus pattern (20 bp):
TTTTTATTTAGTTATCAATG
Found at i:24525109 original size:15 final size:15
Alignment explanation
Indices: 24525086--24525136 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
24525076 CTACCCATGG
*
24525086 CCATTAAACCTTAAA
1 CCATAAAACCTTAAA
*
24525101 CCATAAAACCCTAAA
1 CCATAAAACCTTAAA
* *
24525116 TCAT-AGACCTTAAA
1 CCATAAAACCTTAAA
*
24525130 CCTTAAA
1 CCATAAA
24525137 TATTAATCCC
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (15 bp):
CCATAAAACCTTAAA
Found at i:24525327 original size:15 final size:16
Alignment explanation
Indices: 24525307--24525339 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24525297 TTAGGGTTTT
24525307 TTTA-GGTTTTAAGGG
1 TTTAGGGTTTTAAGGG
*
24525322 TTTAGGGTTTTAGGGG
1 TTTAGGGTTTTAAGGG
24525338 TT
1 TT
24525340 ATATAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (16 bp):
TTTAGGGTTTTAAGGG
Found at i:24525375 original size:57 final size:55
Alignment explanation
Indices: 24525267--24525385 Score: 148
Period size: 57 Copynumber: 2.1 Consensus size: 55
24525257 TTTTTGGGGT
* * * *
24525267 TTTAGGGTTTTAAGGGTTATAGATTAGTGTTTAGGGTTTTTTTAGGTTTTAAGGG
1 TTTAGGGTTTTAAGGGTTATAGACTAGTGTTTAGGATTTTTTTAGGGTTTAAGCG
* * * *
24525322 TTTAGGGTTTTAGGGGTTATATAGACTAGTGTTTATGATTTTTTTGGGGTTTAAGCT
1 TTTAGGGTTTTAAGGG-T-TATAGACTAGTGTTTAGGATTTTTTTAGGGTTTAAGCG
24525379 TTTAGGG
1 TTTAGGG
24525386 GTTATATGAC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
55 15 0.28
56 1 0.02
57 38 0.70
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.49
Consensus pattern (55 bp):
TTTAGGGTTTTAAGGGTTATAGACTAGTGTTTAGGATTTTTTTAGGGTTTAAGCG
Found at i:24525474 original size:41 final size:40
Alignment explanation
Indices: 24525396--24525548 Score: 171
Period size: 41 Copynumber: 3.8 Consensus size: 40
24525386 GTTATATGAC
* * * * *
24525396 TTTTAGTGGCGTTTTACCAAAAATGTCACTATTGCTCTGT
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGT
* *
24525436 TTCTTAGCGGCGCTTTCCCAAAAACGCCGCTATCGCTCTGTT
1 TT-TTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTG-T
** * * *
24525478 TTTTAGTAGCGCTTTGCCAAAAATGCAGCTATTGCTCTGT
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGT
*
24525518 TTTTAGCGGCGTTTTACCAAAAACGCCGCTA
1 TTTTAGCGGCGCTTTACCAAAAACGCCGCTA
24525549 AATCCCTATT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
40 28 0.30
41 61 0.66
42 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (40 bp):
TTTTAGCGGCGCTTTACCAAAAACGCCGCTATTGCTCTGT
Found at i:24525514 original size:82 final size:81
Alignment explanation
Indices: 24525396--24525548 Score: 236
Period size: 82 Copynumber: 1.9 Consensus size: 81
24525386 GTTATATGAC
* * *
24525396 TTTTAGTGGCGTTTTACCAAAAATGTCACTATTGCTCTGTTTCTTAGCGGCGCTTTCCCAAAAAC
1 TTTTAGTAGCGCTTTACCAAAAATGTCACTATTGCTCTGTTT-TTAGCGGCGCTTTACCAAAAAC
24525461 GCCGCTATCGCTCTGTT
65 GCCGCTATCGCTCTGTT
* *
24525478 TTTTAGTAGCGCTTTGCCAAAAATG-CAGCTATTGCTCTGTTTTTAGCGGCGTTTTACCAAAAAC
1 TTTTAGTAGCGCTTTACCAAAAATGTCA-CTATTGCTCTGTTTTTAGCGGCGCTTTACCAAAAAC
24525542 GCCGCTA
65 GCCGCTA
24525549 AATCCCTATT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 29 0.45
82 36 0.55
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (81 bp):
TTTTAGTAGCGCTTTACCAAAAATGTCACTATTGCTCTGTTTTTAGCGGCGCTTTACCAAAAACG
CCGCTATCGCTCTGTT
Done.