Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 81 of 320
Found at i:25552285 original size:42 final size:42
Alignment explanation
Indices: 25552233--25552379 Score: 170
Period size: 43 Copynumber: 3.5 Consensus size: 42
25552223 AGGATAGTGG
* * ** **
25552233 TGACTTTTAGCGGCGTTTTTAAGGAAAGCGTTGCTAAA-AACA
1 TGACCTTTAGCGGCGTTTTT-GGGAAAGCGCCGCTAAAGGTCA
* *
25552275 TGACCTTTAGCAGCGTTTTTGGGGAAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAGGTCA
* *
25552317 TGATCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTT-TTGGGAAAGCGCCGCTAAAGGTCA
*
25552360 TGACCTTCAGCGGCGTTTTT
1 TGACCTTTAGCGGCGTTTTT
25552380 TTACATAAAC
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
41 13 0.15
42 37 0.42
43 38 0.43
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (42 bp):
TGACCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAGGTCA
Found at i:25552360 original size:43 final size:43
Alignment explanation
Indices: 25552233--25552379 Score: 181
Period size: 42 Copynumber: 3.5 Consensus size: 43
25552223 AGGATAGTGG
* ** ** **
25552233 TGACTTTTAGCGGCGTTTTTAAGGAAAGCGTTGCTAAA-AACA
1 TGACCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCA
*
25552275 TGACCTTTAGCAGCGTTTTTGGGG-AAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCA
* *
25552317 TGATCTTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCA
*
25552360 TGACCTTCAGCGGCGTTTTT
1 TGACCTTTAGCGGCGTTTTT
25552380 TTACATAAAC
Statistics
Matches: 89, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 11 0.12
42 43 0.48
43 35 0.39
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTCA
Found at i:25566806 original size:98 final size:96
Alignment explanation
Indices: 25566587--25566806 Score: 250
Period size: 98 Copynumber: 2.3 Consensus size: 96
25566577 TATAATGCCA
* * *
25566587 ATGCCATGTCCCAGACATGG-CTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAAACAT
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCCCAAACAT
* *
25566651 GGTCTTACACTGACTATCGAAATCAAGGTCG
66 GGTATTACACTGACTACCGAAATCAAGGTCG
* * * *
25566682 ACGCCATGTCCTAGACATGGTCTTACACTAGCTC-TCACATATCCATGCCGATGCCATGTCCTAG
1 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCATC-C--AT-CAAGCCGATGCCATGTCCCAA
*** *
25566746 ACATGGTATTACACTGAC-ACCTCTATC-TGTGTCG
62 ACATGGTATTACACTGACTACCGAAATCAAG-GTCG
25566780 ATGCCATGTCCTAGACATGGTCTTACA
1 ATGCCATGTCCTAGACATGGTCTTACA
25566807 TTGACACACC
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
95 20 0.19
96 13 0.12
97 1 0.01
98 37 0.35
99 34 0.32
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCTAGACATGGTCTTACACTAGCTCATCCATCAAGCCGATGCCATGTCCCAAACAT
GGTATTACACTGACTACCGAAATCAAGGTCG
Found at i:25566920 original size:48 final size:47
Alignment explanation
Indices: 25566581--25566946 Score: 248
Period size: 48 Copynumber: 7.7 Consensus size: 47
25566571 ATAGCGTATA
* *
25566581 ATGCCAATGCCATGTCCCAGACATGG-CTTACACTGGCTCATCCATCA-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CATAAT
* * * *
25566628 A-GTCGATGCCATGTCCCAAACATGGTCTTACACTGACTATCGA-AAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAAT
* * * * * *
25566674 CAAGGTCGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATAT
1 --ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT
* * * * *
25566724 CCATGCCGATGCCATGTCCTAGACATGGTATTACACTGACACCTC-TATCT
1 --ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-AT
* * * * * * * * *
25566774 GTGTCGATGCCATGTCCTAGACATGGTCTTACATTGACACACCTCAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
* * * **
25566821 A-GCCGATG-CATGTTCCAGATA-GGTCTTATACTGGCTCTCATCTT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
25566865 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
* * *
25566913 GTGGCCGATG-TATGTCCCAAACAT-GTCTTACACT
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
25566947 AGCACACAAA
Statistics
Matches: 254, Mismatches: 50, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
44 16 0.06
45 13 0.05
46 46 0.18
47 39 0.15
48 64 0.25
49 35 0.14
50 38 0.15
51 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
Found at i:25566922 original size:140 final size:145
Alignment explanation
Indices: 25566577--25566946 Score: 367
Period size: 140 Copynumber: 2.6 Consensus size: 145
25566567 AAACATAGCG
*
25566577 TATAATGCCAATGCCATGTCCCAGACATGG-CTTACACTGGCTCATCCATCAA-GT--CGATGCC
1 TATAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-T-CAT-AATGTGGCGATGCC
*
25566638 ATGTCCCAAACATGGTCTTACACTGACTATCGAAATCAAGGTCGACGCCATGTCCTAGACATGGT
63 ATGTCCCAAACATGGTCTTACACTGACTATCGAAATCAAGGCCGACGCCATGTCCTAGACATGGT
25566703 CTTACACTAGCTCTCACA
128 CTTACACTAGCTCTCACA
* * * * * * *
25566721 TATCCATGCCGATGCCATGTCCTAGACATGGTATTACACTGACACCTC-TATCTGTGTCGATGCC
1 TAT-AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATA-ATGTGGCGATGCC
* * * ** * *
25566785 ATGTCCTAGACATGGTCTTACATTGAC-A-C-ACCTCATA-GCCGATG-CATGTTCC-AGATA-G
63 ATGTCCCAAACATGGTCTTACACTGACTATCGAAATCA-AGGCCGACGCCATG-TCCTAGACATG
* *
25566843 GTCTTATACTGGCTCTCATC-
126 GTCTTACACTAGCTCTCA-CA
*
25566863 T-TAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATG-TAT
1 TATAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG-CGATGCCAT
25566926 GTCCCAAACAT-GTCTTACACT
65 GTCCCAAACATGGTCTTACACT
25566947 AGCACACAAA
Statistics
Matches: 186, Mismatches: 28, Indels: 30
0.76 0.11 0.12
Matches are distributed among these distances:
138 9 0.05
139 18 0.10
140 42 0.23
141 1 0.01
142 18 0.10
143 10 0.05
144 16 0.09
145 29 0.16
146 11 0.06
147 32 0.17
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (145 bp):
TATAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCGATGCCATG
TCCCAAACATGGTCTTACACTGACTATCGAAATCAAGGCCGACGCCATGTCCTAGACATGGTCTT
ACACTAGCTCTCACA
Found at i:25575524 original size:22 final size:22
Alignment explanation
Indices: 25575499--25575541 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
25575489 CATCGTGATC
*
25575499 TTTTAAAAACAGGTAGTTTTTT
1 TTTTAAAAACAAGTAGTTTTTT
25575521 TTTTAAAAACAAGTAGTTTTT
1 TTTTAAAAACAAGTAGTTTTT
25575542 ATAAAACGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.49
Consensus pattern (22 bp):
TTTTAAAAACAAGTAGTTTTTT
Found at i:25579024 original size:27 final size:26
Alignment explanation
Indices: 25578980--25579031 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
25578970 CTTGCTGCAA
*
25578980 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
25579007 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
25579032 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:25579096 original size:33 final size:32
Alignment explanation
Indices: 25579047--25579110 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
25579037 CTCGCTGCAA
* *
25579047 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
25579080 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
25579111 GTGACTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:25583252 original size:46 final size:46
Alignment explanation
Indices: 25583185--25583351 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
25583175 TGTAACCCGC
*
25583185 CCATAAGTGAATTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
25583231 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
25583281 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
25583324 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
25583352 AAGTTCAGAT
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:25583379 original size:46 final size:45
Alignment explanation
Indices: 25583286--25583371 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
25583276 TACATCTCAC
* * *
25583286 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGTTC-AACATGCGCAACCATAAGT
* *
25583332 GAACTCGGACTCAACTCAACAAGTTC-AGATGCTCAACCAT
1 GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCAT
25583372 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 10 0.29
46 25 0.71
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCATAAGT
Found at i:25586821 original size:46 final size:44
Alignment explanation
Indices: 25586747--25586895 Score: 124
Period size: 46 Copynumber: 3.3 Consensus size: 44
25586737 GTCGATGTTG
* * * *
25586747 TGTCCCAGACAGGTCTTACATTGACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACATAGACACATCT---CGTAGCCGACGCA
*
25586793 TGTCCCAGACATGTCTTACACTAG-CACATCTCGTAGCCGATGCA
1 TGTCCCAGACATGTCTTACA-TAGACACATCTCGTAGCCGACGCA
* * * *
25586837 TGTCCCAGACATGTCTGACATTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACATAGAC-A-CATCTCGTA-GCCGACGCA
*
25586883 TGTCCCATACATG
1 TGTCCCAGACATG
25586896 GTTTTACACT
Statistics
Matches: 89, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
43 5 0.06
44 27 0.30
45 2 0.02
46 53 0.60
47 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACATAGACACATCTCGTAGCCGACGCA
Found at i:25586849 original size:44 final size:44
Alignment explanation
Indices: 25586790--25586911 Score: 156
Period size: 46 Copynumber: 2.7 Consensus size: 44
25586780 CCGTGCTGAC
*
25586790 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGTA-GCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGCACATCTCG-AGGCCGAT
* *
25586834 GCATGTCCCAGACATGTCTGACATTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTGGC-A-CATCTCGAGGCCGAT
* *
25586880 GCATGTCCCATACATGGTTTTACACTGGCACA
1 GCATGTCCCAGACAT-GTCTTACACTGGCACA
25586912 CAAATCTCAT
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
44 25 0.37
45 4 0.06
46 28 0.42
47 10 0.15
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTGGCACATCTCGAGGCCGAT
Found at i:25589560 original size:46 final size:45
Alignment explanation
Indices: 25589467--25589552 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
25589457 TACATCTCAC
* * *
25589467 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACAAGTTC-AACATGCGCAACCATAAGT
* *
25589513 GAACTCGGACTCAACTCAACAAGTTC-ATATGCTCAACCAT
1 GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCAT
25589553 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 10 0.29
46 25 0.71
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACAAGTTCAACATGCGCAACCATAAGT
Found at i:25596041 original size:33 final size:32
Alignment explanation
Indices: 25595992--25596055 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
25595982 CTCGCTGCAA
* *
25595992 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
25596025 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
25596056 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:25596069 original size:27 final size:26
Alignment explanation
Indices: 25596017--25596076 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
25596007 ACACATATAT
*
25596017 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
25596043 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
25596070 ATATCTG
1 ATATCTG
25596077 GCAGCTTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:25597373 original size:44 final size:44
Alignment explanation
Indices: 25597325--25597463 Score: 133
Period size: 44 Copynumber: 3.1 Consensus size: 44
25597315 TACTGCAACT
25597325 TTAGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCCTACTAC
1 TTAGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCCTACTAC
* * * * * *
25597369 TTAGGG-GATTA-ACGTT-CAGTGTCTTCAGTCTGCT-CCACTGCAAC
1 TTAGGGAGATAAGAC-TTGCAAT-T-TTCAGCCTGTTACC-CTACTAC
* *
25597413 TTCAGGGAGATAAGACTTGTAATTTTCAACCTGTTACCCTACTAC
1 TT-AGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCCTACTAC
25597458 TTAGGG
1 TTAGGG
25597464 GATTTACGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 18
0.69 0.13 0.17
Matches are distributed among these distances:
42 5 0.07
43 9 0.12
44 26 0.36
45 19 0.26
46 9 0.12
47 4 0.06
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (44 bp):
TTAGGGAGATAAGACTTGCAATTTTCAGCCTGTTACCCTACTAC
Found at i:25597413 original size:89 final size:89
Alignment explanation
Indices: 25597316--25597622 Score: 406
Period size: 89 Copynumber: 3.4 Consensus size: 89
25597306 GATCTACTCT
* *
25597316 ACTGCAACTTTAGGGAGATAAGA-CTTGCAATTTTCAGCCTGTTACCCTACTACTTAGGGGATTA
1 ACTGCAACTTCAGGGAGATAAGATC-TGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGATTA
* *
25597380 ACGTTCAGTGTCTTCAGTCTGCTCC
65 ACGTTCAATGTCTTCAGTTTGCTCC
* * * *
25597405 ACTGCAACTTCAGGGAGATAAGA-CTTGTAATTTTCAACCTGTTACCCTACTACTTAGGGGATTT
1 ACTGCAACTTCAGGGAGATAAGATC-TGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGATTA
*
25597469 ACGCTCAATGTCTTC-GATTTGCTCC
65 ACGTTCAATGTCTTCAG-TTTGCTCC
* *
25597494 ACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCGGCCTGTTACCCTACTACTTAGGGGGTTAA
1 ACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGATTAA
* *
25597559 -GTCTCATTGTCTTCAATTTGCTCC
66 CGT-TCAATGTCTTCAGTTTGCTCC
* * *
25597583 ACTACAACTTCAGGGAGAAAAGATCTACAATCTTCAGCCT
1 ACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCT
25597623 ACTCCACTAC
Statistics
Matches: 194, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
88 2 0.01
89 191 0.98
90 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (89 bp):
ACTGCAACTTCAGGGAGATAAGATCTGCAATCTTCAGCCTGTTACCCTACTACTTAGGGGATTAA
CGTTCAATGTCTTCAGTTTGCTCC
Found at i:25597695 original size:88 final size:87
Alignment explanation
Indices: 25597573--25597781 Score: 294
Period size: 88 Copynumber: 2.4 Consensus size: 87
25597563 CATTGTCTTC
* * *
25597573 AATTTGCTCCACTACAACTTCAGGGAGAAAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
1 AATTTGCTTCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAAC-T
* * *
25597638 TAGGGAGATA-GAGTGGTGGCTTA
65 TAAGAAGATAGGA-TGGTAGCTTA
* *
25597661 AATTTGCTTCACTGCAACTTCAGGGAGACGAGATCTACAATCTTTAGCCTACTCCACTACAACTT
1 AATTTGCTTCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
25597726 AAGAAGATAGGATGGTAGCTTA
66 AAGAAGATAGGATGGTAGCTTA
* * *
25597748 AATCTGCTTCATTGCAACTTCAGGAAGACAAGAT
1 AATTTGCTTCACTGCAACTTCAGGGAGACAAGAT
25597782 TCGCCGTCTT
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
87 48 0.44
88 60 0.56
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (87 bp):
AATTTGCTTCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTT
AAGAAGATAGGATGGTAGCTTA
Found at i:25612928 original size:130 final size:130
Alignment explanation
Indices: 25612762--25613019 Score: 399
Period size: 130 Copynumber: 2.0 Consensus size: 130
25612752 ATTCATAGAT
* * * *
25612762 CATGAGTGAAATTCTAAGGGAATATTTGATTATTTTGAACAAACAGGAAATCGCAACCTAGCACG
1 CATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCACG
* *
25612827 ATAGGGCACGATTCCTGAATTACCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAGA
66 ATAGGGCACGATTCCCGAATTACCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
* * *
25612892 CATGAGTGAAATTCCAAAGGAATATTCGTTTGTTTTGAACAAACGGGAAATCGCAACCCAGCACG
1 CATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCACG
* ** *
25612957 ATAGGGCACGATTCCCGAATTGCCAAACATCGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
66 ATAGGGCACGATTCCCGAATTACCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAA
25613020 TGAATAGTTA
Statistics
Matches: 115, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 115 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
CATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACAGGAAATCGCAACCCAGCACG
ATAGGGCACGATTCCCGAATTACCAAACATCGAACATTACCTTCGTTTTAAAGAATTTTTAAAGA
Found at i:25617293 original size:47 final size:47
Alignment explanation
Indices: 25617221--25617868 Score: 912
Period size: 47 Copynumber: 13.6 Consensus size: 47
25617211 CCCTTTGGGA
* * *
25617221 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
25617268 CTTATCAAATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
25617315 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
25617362 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
25617409 CTTATCACACATACT-CA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
25617456 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
25617503 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
25617550 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
25617601 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
25617648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
25617697 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
25617744 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
25617793 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
25617842 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25617869 TATTCAAATA
Statistics
Matches: 566, Mismatches: 23, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.00
47 378 0.67
49 142 0.25
51 43 0.08
52 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:25617709 original size:145 final size:144
Alignment explanation
Indices: 25617221--25617868 Score: 905
Period size: 145 Copynumber: 4.5 Consensus size: 144
25617211 CCCTTTGGGA
* *
25617221 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCA-AATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
* *
25617283 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
66 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCAC
* *
25617348 ATTGGCCATTCGGC
131 ATCGGCCATTAGGC
* * *
25617362 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATATA
* *
25617423 T-CA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCAT
64 TACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCAT
* *
25617486 CACATTGGCCATTCGGC
128 CACATCGGCCATTAGGC
* *
25617503 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--A-ATA
25617565 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTC
62 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTC
25617629 ATCACATCGGCCATTAGGC
126 ATCACATCGGCCATTAGGC
* *
25617648 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
* *
25617712 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCAT
66 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACA-TGTTCACATTCAT
25617776 CACATCGGCCATTAGGC
128 CACATCGGCCATTAGGC
*
25617793 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
25617857 CACTTTCACATT
66 CACTTTCACATT
25617869 TATTCAAATA
Statistics
Matches: 472, Mismatches: 18, Indels: 30
0.91 0.03 0.06
Matches are distributed among these distances:
140 2 0.00
141 178 0.38
142 2 0.00
143 52 0.11
144 1 0.00
145 193 0.41
146 2 0.00
147 41 0.09
148 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (144 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATATATA
CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCAC
ATCGGCCATTAGGC
Found at i:25619383 original size:56 final size:56
Alignment explanation
Indices: 25619316--25619435 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
25619306 GATTAGTTTA
25619316 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
25619372 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
25619428 TTGCCCAT
1 TTGCCCAT
25619436 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:25620759 original size:40 final size:40
Alignment explanation
Indices: 25620702--25621016 Score: 209
Period size: 40 Copynumber: 7.9 Consensus size: 40
25620692 CAAATACACG
* * * *
25620702 TCACCAGCATGATTGCTCTTCAGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
25620742 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
25620782 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
25620822 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
25620862 GTAACTC-GCACAAATGC-CTTCGGGACTTAACCCAGATTTA
1 -TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
25620902 GTAACTTGCACCAATGC-CTTCGGG-CTTAGCCCGGA-ATTA
1 -TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA-TA
* * * *
25620941 GTAACTC-GCACAAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* * *
25620982 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCACGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
25621017 CATCATTCGA
Statistics
Matches: 223, Mismatches: 41, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.13
40 173 0.78
41 19 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:25620852 original size:80 final size:79
Alignment explanation
Indices: 25620729--25621016 Score: 269
Period size: 80 Copynumber: 3.6 Consensus size: 79
25620719 CTTCAGGACC
* * * ** * * *
25620729 TAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA-TCACTAGCACG
1 TAGCCCGGATATATCACTAGCACCAATGC-CTTCGGGACTTAGCACGGATATAGTAACTCGCACA
25620793 AATGCTCTTCGGAACT
65 AATGC-CTTCGGAACT
* ** * *
25620809 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACA
1 TAGCCCGGATATATCACTAGCACCAATGC-CTTCGGGACTTAGCACGGATATAGTAACTCGCACA
*
25620874 AATGCCTTCGGGACT
65 AATGCCTTCGGAACT
* * * * * *
25620889 TAACCCAGATTTAGTAACTTGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCAC
1 TAGCCCGGATATA-TCACTAGCACCAATGCCTTCGGGACTTAGCACGGATA-TAGTAACTCGCAC
*
25620952 AAATGCCTTCGGATCT
64 AAATGCCTTCGGAACT
* * *
25620968 TAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCACGGA
1 TAGCCCGGATAT-ATCAC-TAGCACCAATGCCTTCGGGACTTAGCACGGA
25621017 CATCATTCGA
Statistics
Matches: 170, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
78 1 0.01
79 60 0.35
80 84 0.49
81 25 0.15
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
TAGCCCGGATATATCACTAGCACCAATGCCTTCGGGACTTAGCACGGATATAGTAACTCGCACAA
ATGCCTTCGGAACT
Found at i:25621000 original size:79 final size:81
Alignment explanation
Indices: 25620839--25621016 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 81
25620829 CATGAATGCT
* *
25620839 CTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTTAG
1 CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAG
*
25620903 TAACTTGCACCAATGC
66 TAACTTGCACCAAAGC
** * *
25620919 CTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATG
1 CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATATA
*
25620981 GTCACTTAGCA-CAAAGC
65 GTAACTT-GCACCAAAGC
*
25620998 CTTCGGGACTTAGCACGGA
1 CTTCGGGACTTAGCCCGGA
25621017 CATCATTCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 61 0.72
80 21 0.25
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATATAG
TAACTTGCACCAAAGC
Found at i:25623355 original size:22 final size:22
Alignment explanation
Indices: 25623327--25623448 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
25623317 TTCCACATCC
25623327 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
25623349 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
25623373 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
25623396 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
25623420 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
25623443 ATCACA
1 ATCACA
25623449 CATACTCATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:25623362 original size:47 final size:47
Alignment explanation
Indices: 25623299--25624191 Score: 1278
Period size: 47 Copynumber: 18.6 Consensus size: 47
25623289 ACCTTCGGGA
* * * *
25623299 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623346 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
25623393 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* *
25623440 CTTATCACACATACT-CA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
25623487 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
25623534 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
*
25623581 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623679 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
25623728 CTTATCACATATA-ACCACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATA-CACTTTCACATTCATCACATTGGCCATTAGGC
25623775 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
25623824 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTAGGC
25623873 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
25623922 CTTATCACATATA-ACCACTTTCACATTCAGCATATCGGCCATTAGGC
1 CTTATCACATATATA-CACTTTCACATTCATCACATTGGCCATTAGGC
25623969 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
25624018 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTAGGC
25624067 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTAGGC
25624116 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATTGGCCATTAGGC
25624165 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
25624192 TATTCAAATA
Statistics
Matches: 798, Mismatches: 26, Indels: 44
0.92 0.03 0.05
Matches are distributed among these distances:
46 4 0.01
47 374 0.47
48 1 0.00
49 373 0.47
50 2 0.00
51 43 0.05
52 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:25623712 original size:49 final size:49
Alignment explanation
Indices: 25623299--25624191 Score: 1285
Period size: 49 Copynumber: 18.6 Consensus size: 49
25623289 ACCTTCGGGA
* * *
25623299 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623346 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
25623393 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
25623440 CTTATCACACATA-CT-CA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
25623487 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
* * *
25623534 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGC
*
25623581 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623632 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623679 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
25623728 CTTATCACATATA-A-CCACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
25623775 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623824 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623873 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
25623922 CTTATCACATATA-A-CCACTTTCACATTCAGCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
25623969 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25624018 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25624067 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25624116 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
25624165 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
25624192 TATTCAAATA
Statistics
Matches: 796, Mismatches: 32, Indels: 36
0.92 0.04 0.04
Matches are distributed among these distances:
45 3 0.00
46 3 0.00
47 363 0.46
48 5 0.01
49 378 0.47
51 43 0.05
52 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:25623844 original size:194 final size:193
Alignment explanation
Indices: 25623299--25624191 Score: 1341
Period size: 194 Copynumber: 4.6 Consensus size: 193
25623289 ACCTTCGGGA
* * *
25623299 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA-AC
* * *
25623362 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATC
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATC
* * *
25623424 ACATTGGCCATTCGGCCTTATCACACATAC-T-CA-TGTTCACATTCATCACATTGGCCATTCGG
129 ACATTGGCCATTAGGCCTTATCACATATACATACACT-TTCACATTCATCACATTGGCCATTAGG
25623486 C
193 C
* * * *
25623487 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT-AC
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAAC
*
25623548 ACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATATACACTTTCACATTC
65 AC-T-TTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTC
* *
25623613 ATCACATTGGCCATTCGGCCTTATCACATAT--ATACACTTTCACATTCATCACATCGGCCATTA
126 ATCACATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTA
25623676 GGC
191 GGC
*
25623679 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAACC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAA-C
* *
25623744 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
25623809 CATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
130 CATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25623873 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAACC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAA-C
* * *
25623938 ACTTTCACATTCAGCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
65 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
25624003 CATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
130 CATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
*
25624067 CTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATACAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATAT--A-
25624132 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
63 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
25624192 TATTCAAATA
Statistics
Matches: 656, Mismatches: 26, Indels: 40
0.91 0.04 0.06
Matches are distributed among these distances:
186 4 0.01
187 3 0.00
188 84 0.13
191 1 0.00
192 134 0.20
193 2 0.00
194 383 0.58
195 3 0.00
196 41 0.06
197 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (193 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATAACA
CTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
ATTGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:25623857 original size:27 final size:27
Alignment explanation
Indices: 25623827--25623909 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
25623817 ATTAGGCCTT
25623827 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
* *** *
25623854 ATCACAT-TGGC---CA-TTAGGCCTT-
1 ATCACATAT-ACATACACTTTCACATTC
25623876 ATCACATATACATACACTTTCACATTC
1 ATCACATATACATACACTTTCACATTC
25623903 ATCACAT
1 ATCACAT
25623910 TGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
22 8 0.21
23 6 0.15
24 2 0.05
25 2 0.05
26 6 0.15
27 15 0.38
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.33
Consensus pattern (27 bp):
ATCACATATACATACACTTTCACATTC
Found at i:25625703 original size:56 final size:56
Alignment explanation
Indices: 25625636--25625753 Score: 227
Period size: 56 Copynumber: 2.1 Consensus size: 56
25625626 TATTAGTTTA
25625636 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
25625692 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
25625748 TTGCCC
1 TTGCCC
25625754 GTCATCCCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:25627345 original size:27 final size:27
Alignment explanation
Indices: 25627315--25627458 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
25627305 TATTAAAATG
* * *
25627315 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
* * *
25627342 CCCTCTATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCGTTTTA
25627369 CCCTCGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
** * *
25627396 CCCTTAATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCGTTTTA
*
25627423 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTATAAAATTACCGTTTTA
25627450 CCCTCGATT
1 CCCTCGATT
25627459 GTGAAATTAT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 100 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCGTTTTA
Found at i:25627520 original size:27 final size:27
Alignment explanation
Indices: 25627490--25627640 Score: 182
Period size: 27 Copynumber: 5.6 Consensus size: 27
25627480 TATAAGATAG
25627490 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
25627517 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * *
25627544 AATTACTGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
25627571 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
25627598 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
25627625 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
25627641 TTGACTTTCT
Statistics
Matches: 106, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.05
27 97 0.92
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:25627531 original size:54 final size:52
Alignment explanation
Indices: 25627471--25627640 Score: 180
Period size: 54 Copynumber: 3.2 Consensus size: 52
25627461 GAAATTATTG
** *
25627471 AAATACCCCTATAAGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTATTTG-TAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCA
** * *
25627525 AAATACCCCTAGTTTGTAAAATTACTGAAATACCACTGGTTTGTGAAATTACCA
1 AAATACCCCTA-TTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCA
* **
25627579 AAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTA-CA
1 AAATACCC-CTATTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTACCA
25627632 GAAATACCC
1 -AAATACCC
25627641 TTGACTTTCT
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
53 3 0.03
54 90 0.93
55 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (52 bp):
AAATACCCCTATTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCA
Found at i:25627579 original size:81 final size:81
Alignment explanation
Indices: 25627490--25627639 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
25627480 TATAAGATAG
* ** *
25627490 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACTGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGA
25627553 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
25627571 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
25627636 TACC
66 TACC
25627640 CTTGACTTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
81 61 0.97
82 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:25627703 original size:27 final size:27
Alignment explanation
Indices: 25627490--25627704 Score: 128
Period size: 27 Copynumber: 7.9 Consensus size: 27
25627480 TATAAGATAG
* * * *
25627490 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * * *
25627517 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* **
25627544 AATTACTGAAATACCAC-TGGTTTGTGA
1 AATTACCGAAATACC-CTTGGTTTGCAA
* *** *
25627571 AATTACCAAAATACCCTCAATTTGTAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* * * *
25627598 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
* *
25627625 AATTACAGAAATACCCTTGACTTT-CTAAA
1 AATTACCGAAATACCCTTG-GTTTGC--AA
** * * *
25627654 AATTATAGAAATACCATTAGTTTACAA
1 AATTACCGAAATACCCTTGGTTTGCAA
*
25627681 AATTACTGAAATACCCTTGGTTTG
1 AATTACCGAAATACCCTTGGTTTG
25627705 TAGATTTACC
Statistics
Matches: 154, Mismatches: 28, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 127 0.82
28 7 0.05
29 19 0.12
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGGTTTGCAA
Found at i:25627821 original size:27 final size:27
Alignment explanation
Indices: 25627757--25627821 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
25627747 ACCCCTAATA
* *
25627757 GGTAAAAAGACCGTAAAGCCTCTGTAG
1 GGTAAAATGACCGTAAACCCTCTGTAG
* *
25627784 GGTAAAGTGACCGTAATACCCT-TGTAT
1 GGTAAAATGACCGTAA-ACCCTCTGTAG
25627811 GGTAAAATGAC
1 GGTAAAATGAC
25627822 GAATATGTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAATGACCGTAAACCCTCTGTAG
Found at i:25628667 original size:25 final size:25
Alignment explanation
Indices: 25628629--25628698 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
25628619 AGGAAGTGCT
* *
25628629 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
25628654 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
25628679 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25628699 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:25628953 original size:31 final size:31
Alignment explanation
Indices: 25628918--25629027 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
25628908 CGTTTACAGT
*
25628918 AAAGGCTTCGGCCCAGTGATATGATTTATAA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
25628949 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
25628980 AAAGGCTTCGACCTAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
25629011 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
25629028 AAATGTCAAG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:25639149 original size:30 final size:30
Alignment explanation
Indices: 25639118--25639175 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25639108 TAATACGAAC
25639118 TTTGAAAAAATTACACTTTTACCCCTAAACT
1 TTTG-AAAAATTACACTTTTACCCCTAAACT
* * *
25639149 TTTGCATAATTACACTTTTTCCCCTAA
1 TTTGAAAAATTACACTTTTACCCCTAA
25639176 GCTCAGGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.33, C:0.24, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTGAAAAATTACACTTTTACCCCTAAACT
Found at i:25639910 original size:11 final size:11
Alignment explanation
Indices: 25639883--25639912 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
25639873 CAATCATATC
*
25639883 ATAATCATAAA
1 ATAATTATAAA
25639894 ATAATTATAAA
1 ATAATTATAAA
25639905 ATAATTAT
1 ATAATTAT
25639913 TTCTATCTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATTATAAA
Found at i:25653586 original size:21 final size:20
Alignment explanation
Indices: 25653560--25653598 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
25653550 AAGATTGCAT
25653560 ATCTATCAACAAACATTCATA
1 ATCTATCAACAAAC-TTCATA
*
25653581 ATCTATCAAGAAACTTCA
1 ATCTATCAACAAACTTCA
25653599 AAATACACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.23, G:0.03, T:0.28
Consensus pattern (20 bp):
ATCTATCAACAAACTTCATA
Found at i:25658115 original size:39 final size:39
Alignment explanation
Indices: 25658071--25658183 Score: 210
Period size: 39 Copynumber: 2.9 Consensus size: 39
25658061 TACCAGTACA
25658071 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
25658110 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
25658149 AAGCCTGC-GGATCTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGA-CTTTAGCCCGGATACATTTCCAG
25658184 TGTCTTGCTT
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
38 3 0.04
39 70 0.96
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:25663440 original size:20 final size:20
Alignment explanation
Indices: 25663415--25663455 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
25663405 CATCTTGATC
*
25663415 TTTTAAAAACAGGTAGTTTT
1 TTTTAAAAACAAGTAGTTTT
25663435 TTTTAAAAACAAGTAGTTTT
1 TTTTAAAAACAAGTAGTTTT
25663455 T
1 T
25663456 ATAAAACGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (20 bp):
TTTTAAAAACAAGTAGTTTT
Found at i:25663442 original size:19 final size:20
Alignment explanation
Indices: 25663415--25663461 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25663405 CATCTTGATC
*
25663415 TTTT-AAAAACAGGTAGTTT
1 TTTTAAAAAACAAGTAGTTT
*
25663434 TTTTTAAAAACAAGTAGTTT
1 TTTTAAAAAACAAGTAGTTT
*
25663454 TTATAAAA
1 TTTTAAAA
25663462 CGAACCCTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (20 bp):
TTTTAAAAAACAAGTAGTTT
Found at i:25666670 original size:25 final size:24
Alignment explanation
Indices: 25666610--25666671 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
25666600 ATCATTTTTC
*
25666610 GCTCTTTTGAGCTATGAACAGGAA
1 GCTCTATTGAGCTATGAACAGGAA
** * *
25666634 GCTCCTCCTGAGCTGATGGACAGTAA
1 GCT-CTATTGAGCT-ATGAACAGGAA
25666660 GCTCTATTGAGC
1 GCTCTATTGAGC
25666672 CGAAACGGTA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 3 0.10
25 15 0.50
26 12 0.40
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (24 bp):
GCTCTATTGAGCTATGAACAGGAA
Found at i:25666764 original size:26 final size:25
Alignment explanation
Indices: 25666695--25666769 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 25
25666685 TCTGACGAGC
* *
25666695 TGAATCAGTAAGCTCATACGAGTTG
1 TGAATCAGTAAGCTCATATGAGCTG
* *
25666720 TGAA-CAGTAAACTCTTATGAGCTG
1 TGAATCAGTAAGCTCATATGAGCTG
25666744 AT-ATATCAGTAAGCTCATATGAGCTG
1 -TGA-ATCAGTAAGCTCATATGAGCTG
25666770 CGGTGAGTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
24 17 0.41
25 6 0.15
26 18 0.44
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.29
Consensus pattern (25 bp):
TGAATCAGTAAGCTCATATGAGCTG
Found at i:25679604 original size:47 final size:47
Alignment explanation
Indices: 25679546--25679989 Score: 735
Period size: 47 Copynumber: 9.4 Consensus size: 47
25679536 CAGCCAAGAC
25679546 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25679593 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25679640 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
25679687 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
25679736 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25679783 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
25679830 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
25679877 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
25679924 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
25679971 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
25679990 TCTCGAAGGG
Statistics
Matches: 376, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 330 0.88
49 46 0.12
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:25680163 original size:36 final size:37
Alignment explanation
Indices: 25680108--25680185 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
25680098 CCGAGCTCTA
* *
25680108 AAGACCCGATGACTACGTGTGG-GAATTTTGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
25680144 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25680181 AAGAC
1 AAGAC
25680186 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 28 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25682512 original size:9 final size:10
Alignment explanation
Indices: 25682505--25682561 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
25682495 ACGAGAAAAC
25682505 AAAGAAAAGA
1 AAAGAAAAGA
25682515 AAAGAAAAAGTA
1 AAAG-AAAAG-A
*
25682527 AAAGAAGA-A
1 AAAGAAAAGA
25682536 AAAGAAAACGA
1 AAAGAAAA-GA
25682547 AATA-AAAAGA
1 AA-AGAAAAGA
25682557 AAAGA
1 AAAGA
25682562 GAGGCAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
9 9 0.23
10 9 0.23
11 15 0.38
12 6 0.15
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:25682529 original size:6 final size:5
Alignment explanation
Indices: 25682505--25682561 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
25682495 ACGAGAAAAC
*
25682505 AAAGA AAAGA AAAGAA AAAGTA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
25682552 AAAGA AAAGA
1 AAAGA AAAGA
25682562 GAGGCAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:25682536 original size:15 final size:14
Alignment explanation
Indices: 25682505--25682561 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
25682495 ACGAGAAAAC
25682505 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
25682521 AAAGTAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
25682536 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
25682552 AAAGAAAAGA
1 AAAGAAAAGA
25682562 GAGGCAAAAG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 5 0.14
15 11 0.30
16 16 0.43
17 5 0.14
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:25682725 original size:18 final size:19
Alignment explanation
Indices: 25682689--25682727 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25682679 TTTGAGAGAG
*
25682689 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
25682708 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
25682726 AA
1 AA
25682728 TTGAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:25683324 original size:12 final size:12
Alignment explanation
Indices: 25683307--25683336 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25683297 TATTTCAGAG
*
25683307 TTTTTTCGAATT
1 TTTTTTCAAATT
25683319 TTTTTTCAAATT
1 TTTTTTCAAATT
25683331 TTTTTT
1 TTTTTT
25683337 AACTTGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (12 bp):
TTTTTTCAAATT
Found at i:25691185 original size:25 final size:25
Alignment explanation
Indices: 25691155--25691204 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
25691145 GAACCTTTTA
*
25691155 CACATTATAGCTTCAGAAGAAACAC
1 CACATTATAGCTTCAGAAAAAACAC
25691180 CACATTATAGCTTCAGAAAAAACAC
1 CACATTATAGCTTCAGAAAAAACAC
25691205 ATTCACGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.24, G:0.10, T:0.20
Consensus pattern (25 bp):
CACATTATAGCTTCAGAAAAAACAC
Found at i:25714715 original size:23 final size:23
Alignment explanation
Indices: 25714664--25714739 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
25714654 AGCTTTATTA
* * * *
25714664 AGCTGAAGCAATAAGCTCTGATG
1 AGCTGAATCAGTAAGCTCTTACG
*
25714687 ATCTGAATCAGTAAGCTCTTACG
1 AGCTGAATCAGTAAGCTCTTACG
25714710 AGCTGATATATCAGTAAGCT-TATACG
1 AGCTG--A-ATCAGTAAGCTCT-TACG
25714736 AGCT
1 AGCT
25714740 ACGGTGAGTC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
23 22 0.51
25 2 0.05
26 19 0.44
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (23 bp):
AGCTGAATCAGTAAGCTCTTACG
Found at i:25716851 original size:79 final size:78
Alignment explanation
Indices: 25716749--25716971 Score: 256
Period size: 79 Copynumber: 2.8 Consensus size: 78
25716739 GCTCCTCGTT
* *
25716749 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
25716814 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
25716829 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
25716892 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
** * * * *
25716907 CAAATGCCTTCAGATCTTAGTCCGGATATTGTCACTTAGCACAAA--CCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GGGCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
25716970 GA
63 GA
25716972 CATCATTCAA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 44 0.35
79 56 0.45
80 23 0.19
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:25716866 original size:39 final size:40
Alignment explanation
Indices: 25716749--25716971 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
25716739 GCTCCTCGTT
* *
25716749 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
25716789 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25716829 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25716868 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
25716907 CAAATGCCTTC-AGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
25716948 CAAA--CCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25716972 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 88 0.54
40 61 0.37
41 14 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:25724810 original size:39 final size:40
Alignment explanation
Indices: 25724648--25724910 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
25724638 GCTCCTCGTT
* *
25724648 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
25724688 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * *
25724728 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25724768 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
25724807 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
25724846 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
25724887 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25724911 CATCATTCAA
Statistics
Matches: 204, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.43
40 101 0.50
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:25724865 original size:79 final size:78
Alignment explanation
Indices: 25724648--25724910 Score: 313
Period size: 79 Copynumber: 3.3 Consensus size: 78
25724638 GCTCCTCGTT
* *
25724648 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGACTTAGCCC
*
25724711 GGATTTAGTAACTCGCA
63 GGAATTAGT-ACTCGCA
* * * *
25724728 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
25724793 ATTAGTATCTCGCA
66 ATTAGTA-CTCGCA
* *
25724807 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGG
*
25724871 ATATT-GTCACTTAGCA
65 A-ATTAGT-AC-TCGCA
25724887 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25724911 CATCATTCAA
Statistics
Matches: 161, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
78 44 0.27
79 64 0.40
80 49 0.30
81 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
ATTAGTACTCGCA
Found at i:25726860 original size:40 final size:40
Alignment explanation
Indices: 25726830--25726999 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
25726820 GGACTAAGAT
* *
25726830 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
25726870 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
25726910 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
25726950 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
25726989 CCGAAGGCATT
1 CCGAAGGCATT
25727000 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:25726926 original size:80 final size:79
Alignment explanation
Indices: 25726777--25726999 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
25726767 TTGAATGCTG
* * * ** * * * * *
25726777 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
25726841 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
25726857 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
25726922 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
25726937 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
25727000 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:25727019 original size:79 final size:80
Alignment explanation
Indices: 25726852--25727034 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
25726842 GTGCGAGATA
* * *
25726852 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
25726917 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
25726932 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
25726996 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
25727011 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
25727035 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:25741959 original size:67 final size:68
Alignment explanation
Indices: 25741852--25741990 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 68
25741842 GAGGAAGCGT
* *
25741852 TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATAT-T-TGTTCTGGTGACCTCG-TCAC
1 TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCT-AC
25741914 AATA
65 AATA
* * *
25741918 TCTGGCAGCCTCGCTGTAATCTGGTTGG-TTCGCCACATATATATCTGTTCTAGTGGCCTAGCTA
1 TCTGGCAGCCTC-CTGCAATCTGG-TGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCTA
25741982 CAATA
64 CAATA
25741987 TCTG
1 TCTG
25741991 TATCTAGTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
66 12 0.19
67 23 0.37
68 4 0.06
69 23 0.37
70 1 0.02
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.32
Consensus pattern (68 bp):
TCTGGCAGCCTCCTGCAATCTGGTGGCCTCGCCACATATATATCTGTTCTAGTGACCTAGCTACA
ATA
Found at i:25756466 original size:44 final size:42
Alignment explanation
Indices: 25756406--25756570 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
25756396 AATTTTCGCT
25756406 ATTTGATTT-CGTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * * *
25756447 ATTTGAGATTTATGTGTAAGACCATGTTTGGGACATCGGCATCG
1 ATTT--GATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
25756491 TATTTGATTT-CGTGTAAGACC-CTGTCTGGGATAG-TGGCATCCAT
1 -ATTTGATTTACGTGTAAGACCAC-GTCTGGGA-CGTTGGCAT-C-G
* *
25756535 ATTTGA-TTACATGTAAAACCACGTCTGGGACGTTGG
1 ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGG
25756571 TATTGTACGA
Statistics
Matches: 98, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
41 4 0.04
42 25 0.26
43 37 0.38
44 28 0.29
45 4 0.04
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
ATTTGATTTACGTGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:25762239 original size:15 final size:15
Alignment explanation
Indices: 25762219--25762249 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25762209 AATTATGAAA
25762219 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
25762234 GATATGTTTTGTATT
1 GATATGTTTTGGATT
25762249 G
1 G
25762250 TAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:25766780 original size:41 final size:41
Alignment explanation
Indices: 25766729--25766813 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
25766719 ACATTTGTTA
*
25766729 ATGAGTAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
1 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
25766770 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
1 ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
25766811 ATG
1 ATG
25766814 CTATATGTGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.05, G:0.27, T:0.26
Consensus pattern (41 bp):
ATGAGAAGTAAGCATATGTGCAAGTGATGATATGAGAAAAT
Found at i:25770105 original size:48 final size:50
Alignment explanation
Indices: 25770043--25770176 Score: 168
Period size: 48 Copynumber: 2.8 Consensus size: 50
25770033 GGAGGAAGTA
* * *
25770043 AGTGGCAGTTTATCTTCAAATTAGTGGTGGCTT-TCCACAAAGTGTT-TT
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
* * * *
25770091 TGTGGCAGTATATCTGCATA-T-GTGGTGGCTTGTCCACAATGTATTATC
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
*
25770139 AGTGGCAGTTTATCTGCAAATCAGTGGTGGCTTGTCCA
1 AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCA
25770177 TAAATGGTGG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 10 0.14
47 12 0.17
48 34 0.48
50 15 0.21
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (50 bp):
AGTGGCAGTTTATCTGCAAATTAGTGGTGGCTTGTCCACAAAGTATTATC
Found at i:25778218 original size:26 final size:28
Alignment explanation
Indices: 25778167--25778222 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
25778157 GGCTACAAAG
25778167 AAAAGAAGAAGAGAAGGTAGATGGAGAGA
1 AAAAGAAGAAGAGAAGGTAGATGGAG-GA
25778196 AAAAGAA-AAGA-AAGG-AGGA-GGAGGA
1 AAAAGAAGAAGAGAAGGTA-GATGGAGGA
25778221 AA
1 AA
25778223 GATGGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
25 4 0.15
26 5 0.19
27 6 0.23
28 4 0.15
29 7 0.27
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.04
Consensus pattern (28 bp):
AAAAGAAGAAGAGAAGGTAGATGGAGGA
Found at i:25782209 original size:27 final size:26
Alignment explanation
Indices: 25782153--25782209 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
25782143 CAACCTTAAC
* * *
25782153 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
25782179 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
25782206 CCTA
1 CCTA
25782210 TAAAGGCATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:25796525 original size:40 final size:40
Alignment explanation
Indices: 25796479--25796703 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 40
25796469 CTTGCACAAG
* * *
25796479 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
25796519 GCCTTCGGGACTTAGCCCGGATGTAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
25796559 GCCTTCGAGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
25796599 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
25796639 GCCTTCGGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
*
25796680 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
25796704 CATTTGAATA
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 125 0.80
41 27 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:25796576 original size:80 final size:79
Alignment explanation
Indices: 25796443--25796703 Score: 260
Period size: 80 Copynumber: 3.3 Consensus size: 79
25796433 CTAAAGTAAT
* * * * * * * *
25796443 CTTCGGGATTTAG-CCGAATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
25796506 CACTAGCATAAATGC
65 CACTAGCACAAATGC
* * * * *
25796521 CTTCGGGACTTAGCCCGGATGTAATC-GCTAGCACAAATGCCTTCGAGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCG-GTCTTAGCCCGGATATAG
*
25796585 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * *
25796601 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCC-GATTATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGA-TATAG
*
25796665 TCACCTAGCACAAAAGC
64 TCA-CTAGCACAAATGC
25796682 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
25796704 CATTTGAATA
Statistics
Matches: 150, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
78 12 0.08
79 18 0.12
80 87 0.58
81 33 0.22
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:25807063 original size:46 final size:46
Alignment explanation
Indices: 25807013--25807185 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
25807003 TGGTTGAGCA
*
25807013 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
25807059 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
25807106 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
25807152 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
25807186 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:25807169 original size:93 final size:93
Alignment explanation
Indices: 25807010--25807180 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25807000 GGATGGTTGA
* *
25807010 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
25807075 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
25807103 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
25807168 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25807181 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25809352 original size:21 final size:21
Alignment explanation
Indices: 25809319--25809361 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
25809309 ATCTTCTCGA
*
25809319 TTTGGTCTGTTTTG-TGCCTTT
1 TTTGCTCTGTTTTGCT-CCTTT
*
25809340 TTTGCTCTTTTTTGCTCCTTT
1 TTTGCTCTGTTTTGCTCCTTT
25809361 T
1 T
25809362 AACTCTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.00, C:0.19, G:0.16, T:0.65
Consensus pattern (21 bp):
TTTGCTCTGTTTTGCTCCTTT
Found at i:25815024 original size:16 final size:18
Alignment explanation
Indices: 25815003--25815035 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
25814993 CCACACAACT
25815003 CCAAAAT-AT-AATAGTA
1 CCAAAATGATCAATAGTA
25815019 CCAAAATGATCAATAGT
1 CCAAAATGATCAATAGT
25815036 GTGATGAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.52, C:0.15, G:0.09, T:0.24
Consensus pattern (18 bp):
CCAAAATGATCAATAGTA
Found at i:25815740 original size:38 final size:38
Alignment explanation
Indices: 25815613--25815800 Score: 200
Period size: 38 Copynumber: 4.9 Consensus size: 38
25815603 GAATCTAGTC
* * *
25815613 ACCAGCACAAA-CCTGCGGGGCTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGC-GGGATTTAA-CCCGGATATAAT
* * *
25815652 ACCAGCACTAGGCCTGCGGGATTTAACCCTGAT-TAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
25815689 ACCAGCACAAAGCCTGCGAGATTTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
25815727 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* * * *
25815765 TCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-ATTTAA-CCCGGATA
25815801 CACATCAAAT
Statistics
Matches: 125, Mismatches: 20, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
37 33 0.26
38 58 0.46
39 22 0.18
40 12 0.10
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:25815742 original size:75 final size:77
Alignment explanation
Indices: 25815613--25815800 Score: 231
Period size: 76 Copynumber: 2.5 Consensus size: 77
25815603 GAATCTAGTC
* * * *
25815613 ACCAGCACAAA-CCTGCGGGGCTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTA
1 ACCAGCACAAAGCCTGC-GGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTA
25815677 ACCCT-GAT-TAAT
65 A-CCTGGATATAAT
* * *
25815689 ACCAGCACAAAGCCTGCGAGATTTAA-CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 ACCAGCACAAAGCCTGCGGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
25815753 CCTGGATATAAT
66 CCTGGATATAAT
* * *
25815765 TCCAGCATATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACAAAGCCTGCGGG-CTTTAAGCCCGGATA
25815801 CACATCAAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
74 3 0.03
75 36 0.38
76 38 0.40
77 10 0.11
78 8 0.08
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (77 bp):
ACCAGCACAAAGCCTGCGGGCTTTAAGCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
CCTGGATATAAT
Found at i:25819721 original size:43 final size:40
Alignment explanation
Indices: 25819650--25819772 Score: 104
Period size: 43 Copynumber: 2.9 Consensus size: 40
25819640 CGAAAAGCTC
25819650 ATACAATGCCAATGTCCCAA-ATGTGGTCTTACATGTAATAAA
1 ATACAATGCC-ATGTCCCAACA-G-GGTCTTACATGTAATAAA
* * * *
25819692 ATATCAATGCCACTGTCCCATACAGGGTCTGACACGAAATCAA
1 ATA-CAATGCCA-TGTCCCA-ACAGGGTCTTACATGTAATAAA
* * *
25819735 ATACGATGTCGATGTCCCAGACATGGTCTTACATGTAA
1 ATACAATG-CCATGTCCCA-ACAGGGTCTTACATGTAA
25819773 ATCATAAGTC
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
42 29 0.45
43 33 0.51
44 2 0.03
45 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
ATACAATGCCATGTCCCAACAGGGTCTTACATGTAATAAA
Found at i:25819811 original size:44 final size:44
Alignment explanation
Indices: 25819749--25819863 Score: 169
Period size: 44 Copynumber: 2.6 Consensus size: 44
25819739 GATGTCGATG
*
25819749 TCCCAGACATGGTCTTACATGTAAATCATAAGTCGATGCCAACA
1 TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
* * * *
25819793 TCCTAGACGTTGTTTTACATGTAAATCATAAGTCGATGCCAACG
1 TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
*
25819837 TCCCAGACGTGGTCTTACACG-AAATCA
1 TCCCAGACGTGGTCTTACATGTAAATCA
25819864 CATATCAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
43 6 0.10
44 56 0.90
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.27
Consensus pattern (44 bp):
TCCCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACA
Found at i:25820168 original size:15 final size:17
Alignment explanation
Indices: 25820147--25820186 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
25820137 GATCTAAACG
*
25820147 CATTCAAATTTGAC-TT
1 CATTCAAATTTCACATT
25820163 -ATTC-AATTTCACATT
1 CATTCAAATTTCACATT
25820178 CATTCAAAT
1 CATTCAAAT
25820187 CAATCCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 7 0.35
15 6 0.30
16 4 0.20
17 3 0.15
ACGTcount: A:0.35, C:0.20, G:0.03, T:0.42
Consensus pattern (17 bp):
CATTCAAATTTCACATT
Found at i:25839020 original size:30 final size:30
Alignment explanation
Indices: 25838985--25839041 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25838975 TTTACGAGCC
*
25838985 TAGGGGCAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTGTAATATTGACAAAGTT
*
25839015 TAGGGGAAAAATTGTAATATTGCCAAA
1 TAGGGGAAAAATTGTAATATTGACAAA
25839042 ATATGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAATTGTAATATTGACAAAGTT
Found at i:25839713 original size:49 final size:50
Alignment explanation
Indices: 25839635--25839880 Score: 289
Period size: 49 Copynumber: 4.9 Consensus size: 50
25839625 ATCTATTGTG
* * **
25839635 AGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACTGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
25839685 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * **
25839735 CGGTCACGTGTGTAGTAATAAGTGCTGGCTACTACGTCTATCAAATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
25839785 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
25839835 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
25839881 GCCTTGTTTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 46 0.28
51 36 0.22
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:25839813 original size:101 final size:99
Alignment explanation
Indices: 25839685--25839867 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 99
25839675 CTGGATAATT
* * *
25839685 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGGTCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT-GGTCACATGTGTAG
*
25839750 TAATAAGTGCTGGCTACTACGTCTATCAAATGGTTA
64 TAATAAGTGCAGGCTACTACGTCTATCAAATGGTTA
* * *
25839786 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTA
*
25839851 CTAAGTGCAGGCTACTA
66 ATAAGTGCAGGCTACTA
25839868 TGCGTACCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 29 0.39
100 2 0.03
101 43 0.58
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATTGGTCACATGTGTAGTA
ATAAGTGCAGGCTACTACGTCTATCAAATGGTTA
Found at i:25843536 original size:21 final size:21
Alignment explanation
Indices: 25843493--25843536 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25843483 ACACACTCAG
*
25843493 CTTAATTGAACTATTAATGAA
1 CTTAATTGAACTATTAATAAA
*
25843514 CTTAATTGAGCTAATTAA-AAA
1 CTTAATTGAACT-ATTAATAAA
25843535 CT
1 CT
25843537 ACAAGACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (21 bp):
CTTAATTGAACTATTAATAAA
Found at i:25846054 original size:14 final size:16
Alignment explanation
Indices: 25846029--25846061 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
25846019 ATTTTATGTG
25846029 TTTATAATGTGTGA-A
1 TTTATAATGTGTGAGA
25846044 TTTAT-ATGTGTGAGA
1 TTTATAATGTGTGAGA
25846059 TTT
1 TTT
25846062 TTGTGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (16 bp):
TTTATAATGTGTGAGA
Found at i:25846881 original size:15 final size:15
Alignment explanation
Indices: 25846861--25846890 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25846851 GTGAAAATAT
25846861 ATTTGAATAAGTTTA
1 ATTTGAATAAGTTTA
*
25846876 ATTTGAATATGTTTA
1 ATTTGAATAAGTTTA
25846891 GATCAAGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
ATTTGAATAAGTTTA
Found at i:25849574 original size:42 final size:42
Alignment explanation
Indices: 25849515--25849630 Score: 133
Period size: 42 Copynumber: 2.8 Consensus size: 42
25849505 ATTAGTACCC
* * * *
25849515 ATGCCATGTACCAGACATGGTCTTGCACGAGACCTCACATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
* *
25849557 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
* * * * *
25849599 ATGTCATATCCTAGATATGGTCTTACATGAAA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAA
25849631 TCACATGCCG
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAACCTCACATCA
Found at i:25849663 original size:48 final size:52
Alignment explanation
Indices: 25849603--25849746 Score: 163
Period size: 54 Copynumber: 2.8 Consensus size: 52
25849593 ATATCAATGT
*
25849603 CATATCCTAGATATGGTCTTACAT-G-A-A-A-TCACATGCCGAGGCCGATGC
1 CATATCCCAGATATGGTCTTACATAGCACACATTCA-ATGCCGAGGCCGATGC
* * *
25849651 CATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGTCGATGC
1 CATATCCCAGATATGGTCTTACA-TAGCACACA-TTCAATGCCGAGGCCGATGC
*
25849705 CATATCCCAGATATGGTCTTACATTGGCACACATATCAATGC
1 CATATCCCAGATATGGTCTTACA-TAGCACACAT-TCAATGC
25849747 TGATGCCATG
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
48 22 0.27
49 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
53 2 0.02
54 52 0.63
55 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.28
Consensus pattern (52 bp):
CATATCCCAGATATGGTCTTACATAGCACACATTCAATGCCGAGGCCGATGC
Found at i:25849708 original size:54 final size:54
Alignment explanation
Indices: 25849645--25849751 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
25849635 ATGCCGAGGC
*
25849645 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATATCAATGCTGATGT
*
25849699 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCTGATG
1 CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATATCAATGCTGATG
25849752 CCATGTCCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (54 bp):
CGATGCCATATCCCAGATATGGTCTTACATTAGCACACATATCAATGCTGATGT
Found at i:25849769 original size:48 final size:48
Alignment explanation
Indices: 25849646--25849828 Score: 197
Period size: 48 Copynumber: 3.7 Consensus size: 48
25849636 TGCCGAGGCC
* * *
25849646 GATGCCATATCCCAGATATGGTCTTACATTAGCACACATTTCAATGCTGATGT
1 GATGCCATATCCCAGACATGGTCTTACATTGGCACACATATCAATGC-----T
*
25849699 CGATGCCATATCCCAGATATGGTCTTACATTGGCACACATATCAATGCT
1 -GATGCCATATCCCAGACATGGTCTTACATTGGCACACATATCAATGCT
* * * * * *
25849748 GATGCCATGTCCTAGACATGGTCTTACACTGGCTA-TCATATCAACGCC
1 GATGCCATATCCCAGACATGGTCTTACATTGGC-ACACATATCAATGCT
*
25849796 GATGCCATGTCCCAGACATGGTCTTACATTGGC
1 GATGCCATATCCCAGACATGGTCTTACATTGGC
25849829 TCTCATTAAT
Statistics
Matches: 117, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
48 70 0.60
49 2 0.02
54 45 0.38
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATATCCCAGACATGGTCTTACATTGGCACACATATCAATGCT
Found at i:25862250 original size:47 final size:47
Alignment explanation
Indices: 25862191--25862661 Score: 789
Period size: 47 Copynumber: 9.9 Consensus size: 47
25862181 TAGTATGGCG
25862191 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25862238 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTTATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25862285 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25862332 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25862379 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25862428 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25862475 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
25862524 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25862571 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25862618 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25862662 TCCCGAAGGG
Statistics
Matches: 402, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 310 0.77
49 92 0.23
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25862442 original size:96 final size:94
Alignment explanation
Indices: 25862191--25862661 Score: 789
Period size: 96 Copynumber: 5.0 Consensus size: 94
25862181 TAGTATGGCG
25862191 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25862256 ATGTGAAAGTGTATATATGTTATAAGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
25862285 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25862350 ATGTGAAAGTGTATATATGTGATAGGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* *
25862379 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
25862444 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
25862475 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
25862540 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
25862571 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25862636 ATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGAAAGTGTATATATGTGATAAG
25862662 TCCCGAAGGG
Statistics
Matches: 358, Mismatches: 17, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
94 173 0.48
96 185 0.52
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25862478 original size:143 final size:141
Alignment explanation
Indices: 25862191--25862661 Score: 798
Period size: 143 Copynumber: 3.3 Consensus size: 141
25862181 TAGTATGGCG
*
25862191 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
25862256 ATGTGAAAGTGTATATATGTTATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25862321 GTGATAAGGCC
131 GTGATAAGGCC
*
25862332 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
25862397 ATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
25862462 ATGTGATAAGGCC
129 ATGTGATAAGGCC
25862475 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGAT
25862540 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
25862605 ATGTGACAGGGCC
129 ATGTGATAAGGCC
* * * * * *
25862618 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25862662 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 14, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
141 88 0.28
143 178 0.57
145 46 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCC
Found at i:25862836 original size:37 final size:37
Alignment explanation
Indices: 25862780--25862858 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
25862770 CCGAGCTCTA
* *
25862780 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
25862817 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25862854 AAGAC
1 AAGAC
25862859 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25864784 original size:43 final size:43
Alignment explanation
Indices: 25864723--25864825 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
25864713 TTGGTTTTCA
25864723 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
*
25864766 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
25864809 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
25864826 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTCTGAGATTG
Found at i:25864842 original size:29 final size:29
Alignment explanation
Indices: 25864807--25864880 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
25864797 GTTGTGAGAT
* *
25864807 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
25864836 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
25864865 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25864881 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:25865314 original size:40 final size:40
Alignment explanation
Indices: 25865191--25865386 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
25865181 TCGAATGATG
** *
25865191 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
25865231 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
25865271 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
25865311 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * *
25865351 CCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
25865387 CGTGTATTCG
Statistics
Matches: 131, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 111 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:25865328 original size:80 final size:81
Alignment explanation
Indices: 25865191--25865387 Score: 206
Period size: 80 Copynumber: 2.5 Consensus size: 81
25865181 TCGAATGATG
**
25865191 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
25865253 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** *
25865271 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGAT-CCGAAGAGCA
* *
25865334 TTCGTGCTAGTGATATA
65 TTCGTGCGAGTGATAAA
* * * * *
25865351 CCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
25865388 GTGTATTCGG
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 71 0.72
81 20 0.20
82 6 0.06
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:25865578 original size:25 final size:25
Alignment explanation
Indices: 25865549--25865600 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
25865539 TGTGTATTAA
25865549 TGAATGAATAAGA-GCACTATGTATG
1 TGAAT-AATAAGAGGCACTATGTATG
* *
25865574 TGAATAATTAGAGGCACTATGTGTG
1 TGAATAATAAGAGGCACTATGTATG
25865599 TG
1 TG
25865601 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (25 bp):
TGAATAATAAGAGGCACTATGTATG
Found at i:25868351 original size:47 final size:47
Alignment explanation
Indices: 25868292--25868715 Score: 686
Period size: 47 Copynumber: 8.9 Consensus size: 47
25868282 TAGTATGGCG
25868292 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25868339 TAATGGCCGATGTGATGAATGTGAAGGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
25868386 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25868433 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
25868482 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
25868529 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
* *
25868578 TAATAGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
25868625 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
25868672 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25868716 TCCCGAAGGG
Statistics
Matches: 351, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 262 0.75
49 89 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:25868496 original size:96 final size:96
Alignment explanation
Indices: 25868292--25868715 Score: 694
Period size: 96 Copynumber: 4.5 Consensus size: 96
25868282 TAGTATGGCG
25868292 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25868357 ATGTG-AAG-GTGTATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* *
25868386 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATTAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25868451 ATGTGAAAGTGTATATATATGTGATAGGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
25868482 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
25868547 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* *
25868578 TAATAGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
25868643 ATGTGAAAGTG--TATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * * *
25868672 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
25868716 TCCCGAAGGG
Statistics
Matches: 309, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 120 0.39
95 3 0.01
96 186 0.60
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:25868553 original size:143 final size:141
Alignment explanation
Indices: 25868292--25868715 Score: 695
Period size: 143 Copynumber: 3.0 Consensus size: 141
25868282 TAGTATGGCG
*
25868292 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
25868357 ATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
25868422 GTGATTAGGCC
131 GTGATAAGGCC
*
25868433 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 TAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
25868498 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
25868563 ATATGTGATAAGGCC
127 ATATGTGATAAGGCC
*
25868578 TAATAGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
25868643 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
25868708 GTGATAAG
131 GTGATAAG
25868716 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
141 42 0.16
143 178 0.67
145 45 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (141 bp):
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCC
Found at i:25868890 original size:37 final size:37
Alignment explanation
Indices: 25868834--25868912 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
25868824 CCGAGCTCTA
* *
25868834 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
25868871 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25868908 AAGAC
1 AAGAC
25868913 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25877746 original size:20 final size:20
Alignment explanation
Indices: 25877723--25877762 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
25877713 GGAGAAAGTA
25877723 AGAGCCCGGAGGAAAAACTT
1 AGAGCCCGGAGGAAAAACTT
*
25877743 AGAGCCGGGAGGAAAAACTT
1 AGAGCCCGGAGGAAAAACTT
25877763 GATGGAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.33, T:0.10
Consensus pattern (20 bp):
AGAGCCCGGAGGAAAAACTT
Found at i:25883792 original size:13 final size:13
Alignment explanation
Indices: 25883753--25883784 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
25883743 GAGAAAAATG
*
25883753 AATTAACAATGAA
1 AATTAACGATGAA
25883766 AATTAACGATGAA
1 AATTAACGATGAA
25883779 AATTAA
1 AATTAA
25883785 TGGTGAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.25
Consensus pattern (13 bp):
AATTAACGATGAA
Found at i:25889506 original size:65 final size:65
Alignment explanation
Indices: 25889424--25889558 Score: 148
Period size: 66 Copynumber: 2.1 Consensus size: 65
25889414 GTGTGCTAAG
* * * *
25889424 CGTGTGGCCAAGTCAGTA-GCCTCCCTAATTTT-CACACGGCTTGGCACACGGGCGTGTCTTATG
1 CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGC-CACGGCTAGACACACGGGCGTGTCTAAT-
25889487 GC
64 GC
** * * **
25889489 CGTGTGGTGAAGTCAGTATGTATGCCTTGTTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
1 CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
25889554 CGTGT
1 CGTGT
25889559 AAGGCACACG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
65 23 0.40
66 34 0.59
67 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (65 bp):
CGTGTGGCCAAGTCAGTATGCATCCCTAATTTTGCCACGGCTAGACACACGGGCGTGTCTAATGC
Found at i:25891252 original size:20 final size:20
Alignment explanation
Indices: 25891223--25891278 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
25891213 AGGGGATTTG
*
25891223 CACTTCGGTGCCTTTGTTTA
1 CACTTCGGTGCCCTTGTTTA
* *
25891243 CACTTTGGTGCCCTTGTTTT
1 CACTTCGGTGCCCTTGTTTA
* *
25891263 CACCTCAGTGCCCTTG
1 CACTTCGGTGCCCTTG
25891279 ATTGCACATT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.09, C:0.30, G:0.20, T:0.41
Consensus pattern (20 bp):
CACTTCGGTGCCCTTGTTTA
Found at i:25908188 original size:37 final size:37
Alignment explanation
Indices: 25908138--25908216 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
25908128 TTATTACAAA
* *
25908138 GTCTTACCAGGACACAA-TCTCCACACGAAGTTATCAG
1 GTCTTACCAGGACAAAATTC-CCACACGAAGTCATCAG
* * *
25908175 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATTCCCACACGAAGTCATCAG
25908212 GTCTT
1 GTCTT
25908217 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATTCCCACACGAAGTCATCAG
Found at i:25908413 original size:47 final size:47
Alignment explanation
Indices: 25908335--25908829 Score: 810
Period size: 47 Copynumber: 10.5 Consensus size: 47
25908325 CCCTTCGGGA
** * * * * * *
25908335 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
25908382 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25908429 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25908476 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25908523 CTTATCACACATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25908570 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
25908617 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25908664 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25908711 CTTATCACACATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
25908758 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25908805 CTTATCACACATATACACTATCACA
1 CTTATCACACATATACACTTTCACA
25908830 CATATACACT
Statistics
Matches: 427, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 427 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25908833 original size:63 final size:63
Alignment explanation
Indices: 25908760--25908882 Score: 237
Period size: 63 Copynumber: 2.0 Consensus size: 63
25908750 CATTAGGCCT
25908760 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
*
25908823 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATA
25908883 TACTTTCTTG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (63 bp):
TATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
Found at i:25908846 original size:14 final size:16
Alignment explanation
Indices: 25908807--25908845 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
25908797 CATTAGGCCT
25908807 TATCACACATATACAC
1 TATCACACATATACAC
25908823 TATCACACATATACAC
1 TATCACACATATACAC
*
25908839 TTTCACA
1 TATCACA
25908846 TTCATCACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (16 bp):
TATCACACATATACAC
Found at i:25911416 original size:55 final size:55
Alignment explanation
Indices: 25911335--25911472 Score: 134
Period size: 55 Copynumber: 2.5 Consensus size: 55
25911325 TGCGACATGG
* * ** * * *
25911335 CCGTGGGCGAACCTACCAAAACAACACGAG-AGTGTGCCACGCCCGTGCCTAGAAA
1 CCGTGGCCGAACCTATCAAATTAACACGAGCA-TGTGACACACCCGTGCCAAGAAA
* * * * *
25911390 CTGTGGCCGAACCTGTCAAATTAACACGGGCATGTGACACACCCGTGCCAAGTAC
1 CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
* *
25911445 CCGTGGTCGAACCTATTAAATTAACACG
1 CCGTGGCCGAACCTATCAAATTAACACG
25911473 GACGTGGGCC
Statistics
Matches: 66, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.17
Consensus pattern (55 bp):
CCGTGGCCGAACCTATCAAATTAACACGAGCATGTGACACACCCGTGCCAAGAAA
Found at i:25912040 original size:23 final size:23
Alignment explanation
Indices: 25911996--25912040 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
25911986 TTGTCACACC
* * *
25911996 CATGCCATTACTATGCTCATTCT
1 CATGCCATTACCATACTAATTCT
*
25912019 CATGCTATTACCATACTAATTC
1 CATGCCATTACCATACTAATTC
25912041 CACGAAATTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.38
Consensus pattern (23 bp):
CATGCCATTACCATACTAATTCT
Found at i:25917897 original size:23 final size:23
Alignment explanation
Indices: 25917871--25917946 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
25917861 CGGACTCACC
*
25917871 TTAGCTCATATGAGCTTACC-GT
1 TTAGCTCATATGAGCTTACCAAT
25917893 ATTAGCTCAT-TGGAGCTTACCAAT
1 -TTAGCTCATAT-GAGCTTACCAAT
* *
25917917 TTAGCTCGTAAGAGCTTACC-AT
1 TTAGCTCATATGAGCTTACCAAT
25917939 TTCAGCTC
1 TT-AGCTC
25917947 TTCGGGGCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
22 5 0.11
23 40 0.87
24 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (23 bp):
TTAGCTCATATGAGCTTACCAAT
Found at i:25917959 original size:23 final size:23
Alignment explanation
Indices: 25917928--25918004 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 23
25917918 TAGCTCGTAA
*
25917928 GAGCTTACCATTTCAGCTCTTCG
1 GAGCCTACCATTTCAGCTCTTCG
* * *
25917951 GGGCCTACCATTTCAACTCTACG
1 GAGCCTACCATTTCAGCTCTTCG
* * *
25917974 GAGCTTACC-GTTCAGTTCTTCG
1 GAGCCTACCATTTCAGCTCTTCG
*
25917996 GAGCTTACC
1 GAGCCTACC
25918005 GATCATGGCT
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 18 0.41
23 26 0.59
ACGTcount: A:0.18, C:0.31, G:0.19, T:0.31
Consensus pattern (23 bp):
GAGCCTACCATTTCAGCTCTTCG
Found at i:25917960 original size:46 final size:46
Alignment explanation
Indices: 25917871--25917960 Score: 103
Period size: 46 Copynumber: 2.0 Consensus size: 46
25917861 CGGACTCACC
* * *
25917871 TTAGCTCATATGAGCTTACCGTATTAGCTCATTGGAGCTTACCAAT
1 TTAGCTCATAAGAGCTTACCATATTAGCTCATTGGAGCCTACCAAT
* *
25917917 TTAGCTCGTAAGAGCTTACCAT-TTCAGCTC-TTCGGGGCCTACCA
1 TTAGCTCATAAGAGCTTACCATATT-AGCTCATT-GGAGCCTACCA
25917961 TTTCAACTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
45 4 0.11
46 33 0.89
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (46 bp):
TTAGCTCATAAGAGCTTACCATATTAGCTCATTGGAGCCTACCAAT
Found at i:25921232 original size:20 final size:20
Alignment explanation
Indices: 25921207--25921278 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
25921197 CAAAATTTAA
25921207 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTA-AAACT
* *
25921227 ATTTTG-AATTTTAAAAATT
1 ATTTTGAAATTTTTAAAACT
* *
25921246 ATTTTGAAAATTTGAAAACT
1 ATTTTGAAATTTTTAAAACT
25921266 ATTTT-AAATTTTT
1 ATTTTGAAATTTTT
25921279 TTGTAACTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.07
19 20 0.45
20 21 0.48
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (20 bp):
ATTTTGAAATTTTTAAAACT
Found at i:25925222 original size:14 final size:13
Alignment explanation
Indices: 25925178--25925226 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 13
25925168 TTAGAAATAA
*
25925178 TAAATTTATAAACC
1 TAAATTT-TAAAAC
25925192 ATAAATTTTAAAAC
1 -TAAATTTTAAAAC
25925206 TAAATTTTAAAATC
1 TAAATTTTAAAA-C
25925220 TAAATTT
1 TAAATTT
25925227 CAATTCCCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 12 0.38
14 13 0.41
15 7 0.22
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAATTTTAAAAC
Found at i:25932350 original size:10 final size:10
Alignment explanation
Indices: 25932335--25932359 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
25932325 AGGTACATCG
25932335 ACTTCTTTCA
1 ACTTCTTTCA
25932345 ACTTCTTTCA
1 ACTTCTTTCA
25932355 ACTTC
1 ACTTC
25932360 AACTGATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.48
Consensus pattern (10 bp):
ACTTCTTTCA
Done.