Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 82 of 320
Found at i:25937595 original size:46 final size:46
Alignment explanation
Indices: 25937451--25937667 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
25937441 CACTTTGTGA
* * * * * ** * *
25937451 GCTAGTGTAAGCCATGTCTAGGACATGTATCGACAACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
* * *
25937497 GCCAGTGTAAGACCATGTTTGGGACATAGCATCGGCATTAAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAAGACGAGT
* *
25937545 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC-A-T
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
*
25937589 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-T-ACGA-GATGT
1 --GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGA-GT
*
25937635 G-TCAGTGTATGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
25937668 TGTACAGATT
Statistics
Matches: 141, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 13 0.09
45 16 0.11
46 63 0.45
47 25 0.18
48 23 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCAAGACGAGT
Found at i:25944771 original size:30 final size:30
Alignment explanation
Indices: 25944713--25944771 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
25944703 ATTTTCAAGC
* **
25944713 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
25944743 CTAGGGGCAAAATGGTTATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
25944772 AAGTGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:25945255 original size:46 final size:47
Alignment explanation
Indices: 25945159--25945260 Score: 120
Period size: 46 Copynumber: 2.2 Consensus size: 47
25945149 TATGAGAGCC
* * *
25945159 AGTGTAAGAATATGTCTGGGACATGGTATCGGCATTGAGACGAGTTCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACGAG-TCT
*
25945207 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAG-CT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACG--AGTCT
25945253 AGTGTAAG
1 AGTGTAAG
25945261 TGTAACATCC
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
46 23 0.49
47 15 0.32
48 9 0.19
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGGCATCGAGACGAGTCT
Found at i:25957043 original size:30 final size:30
Alignment explanation
Indices: 25957009--25957069 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25956999 TCCTTAACTC
25957009 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
25957039 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
25957069 A
1 A
25957070 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:25959653 original size:39 final size:39
Alignment explanation
Indices: 25959289--25959635 Score: 453
Period size: 39 Copynumber: 8.9 Consensus size: 39
25959279 ATTTGATGTA
* *
25959289 TATCCGGACTTAAGGTCCGCAGGCTTTGTACTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
25959328 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
25959367 TATCCGGACTTAAGGTCCGCAGGCTTCATGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** * * * * *
25959406 TATCCGGGCTTAAAGACCCACAGGCTTCGTACTGGTACTA
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
25959446 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
25959485 TATCCGAACTTAAGGT-CGCAGGCTCCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* **
25959523 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
25959563 TATCCGTACTTAAGATCCGCAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
25959602 TATCCAGACTTAAGGTCCGCAAGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
25959636 TACTATAATC
Statistics
Matches: 267, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
38 30 0.11
39 177 0.66
40 60 0.22
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:25965392 original size:14 final size:14
Alignment explanation
Indices: 25965373--25965400 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25965363 TTTTATTATG
25965373 AGATATTTGAATTC
1 AGATATTTGAATTC
25965387 AGATATTTGAATTC
1 AGATATTTGAATTC
25965401 TTATAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
AGATATTTGAATTC
Found at i:25981870 original size:40 final size:40
Alignment explanation
Indices: 25981826--25982053 Score: 318
Period size: 40 Copynumber: 5.7 Consensus size: 40
25981816 GCTACTTGCT
*
25981826 CAAATGCCTTCGGGACTTAGCCCAATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
25981866 CAAATGCCTTCGAGACTTAGCCCGGA-TATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
* *
25981906 CAAATGCCTTCGGGAATTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
25981946 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* * *
25981986 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
*
25982025 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGATTAT
25982054 CATCCGAATA
Statistics
Matches: 167, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.20
40 132 0.79
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:25987167 original size:27 final size:27
Alignment explanation
Indices: 25987137--25987314 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
25987127 ATATTGAGCC
* * * *
25987137 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
25987164 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
25987191 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
25987219 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
25987246 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
25987273 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
25987300 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25987315 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:25987276 original size:82 final size:81
Alignment explanation
Indices: 25987158--25987313 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
25987148 TGCTATATAA
* * *
25987158 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
25987223 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
25987240 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
25987304 CACTTAGTGC
65 CACTTAGTGC
25987314 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:25993670 original size:40 final size:40
Alignment explanation
Indices: 25993626--25993853 Score: 325
Period size: 40 Copynumber: 5.7 Consensus size: 40
25993616 GCTACTTGCT
* * *
25993626 CAAATGCTTTCGGGACTTAGCCTGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
25993666 CAAATGCCTTTGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
25993706 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
25993746 CAAATGCCTTCAGGACTTAGCCCGGTTATCGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
25993786 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
25993825 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
25993854 CATCCGAATA
Statistics
Matches: 167, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 132 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26003967 original size:14 final size:14
Alignment explanation
Indices: 26003943--26003986 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
26003933 CAAAATGTAC
26003943 TATATAATTAAATAA
1 TATA-AATTAAATAA
26003958 TATAAATTAAATAA
1 TATAAATTAAATAA
* *
26003972 AATAAATTAATTAA
1 TATAAATTAAATAA
26003986 T
1 T
26003987 TGTTTACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 22 0.85
15 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TATAAATTAAATAA
Found at i:26007211 original size:22 final size:25
Alignment explanation
Indices: 26007186--26007232 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26007176 TTAATCTCGT
26007186 TTTTTCA-AA-ATAA-TTTTTTTTA
1 TTTTTCAGAAGATAACTTTTTTTTA
*
26007208 TTTTTCAGAAGTTAACTTTTTTTTA
1 TTTTTCAGAAGATAACTTTTTTTTA
26007233 CTTTCTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 3 0.14
25 9 0.43
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (25 bp):
TTTTTCAGAAGATAACTTTTTTTTA
Found at i:26007271 original size:35 final size:34
Alignment explanation
Indices: 26007225--26007290 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
26007215 GAAGTTAACT
26007225 TTTTTTTACTTTCTTTTTTTTTAAAATTTTATAGC
1 TTTTTTTACTTTC-TTTTTTTTAAAATTTTATAGC
26007260 TTTTTTTACTTTCTTTTTTTTAAAATTTTAT
1 TTTTTTTACTTTCTTTTTTTTAAAATTTTAT
26007291 TTAAACTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.71
Consensus pattern (34 bp):
TTTTTTTACTTTCTTTTTTTTAAAATTTTATAGC
Found at i:26029913 original size:24 final size:24
Alignment explanation
Indices: 26029899--26029992 Score: 143
Period size: 24 Copynumber: 3.9 Consensus size: 24
26029889 TATTGACATT
26029899 CAAATCCGCACACATAGTGCCATA
1 CAAATCCGCACACATAGTGCCATA
26029923 CAAATCCGCACACATAGTGCCATA
1 CAAATCCGCACACATAGTGCCATA
* *
26029947 CAAATTCGCACACATAGTGCCATT
1 CAAATCCGCACACATAGTGCCATA
* * *
26029971 CAAATTCGCGCACGTAGTGCCA
1 CAAATCCGCACACATAGTGCCA
26029993 AAGTCATTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 66 1.00
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (24 bp):
CAAATCCGCACACATAGTGCCATA
Found at i:26029916 original size:48 final size:48
Alignment explanation
Indices: 26029859--26029975 Score: 135
Period size: 48 Copynumber: 2.4 Consensus size: 48
26029849 TGTTAACCCA
* ** * * * *
26029859 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCG
1 CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
* * *
26029907 CACACATAGTGCCATACAAATCCGCACACATAGTGCCATACAAATTCG
1 CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
*
26029955 CACACATAGTGCCATTCAAAT
1 CACACATAGTGCCATACAAAT
26029976 TCGCGCACGT
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 58 1.00
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.24
Consensus pattern (48 bp):
CACACATAGTGCCATACAAATCCACACACATAGTGACATACAAATCCG
Found at i:26029962 original size:72 final size:72
Alignment explanation
Indices: 26029859--26029992 Score: 178
Period size: 72 Copynumber: 1.9 Consensus size: 72
26029849 TGTTAACCCA
* ** * *
26029859 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAC
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
26029924 AAATCCG
66 AAATCCG
* * * * *
26029931 CACACATAGTGCCATACAAATTCGCACACATAGTGCCATTCAAATTCGCGCACGTAGTGCCA
1 CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCA
26029993 AAGTCATTTC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 52 1.00
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.23
Consensus pattern (72 bp):
CACACATAGTGCCATACAAATTCACACACATAGTGACATTCAAATCCGCACACATAGTGCCATAC
AAATCCG
Found at i:26031033 original size:19 final size:19
Alignment explanation
Indices: 26031009--26031057 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
26030999 ACTCTCTCTC
*
26031009 TCTTTTCTTATTTTATTCA
1 TCTTTTCTTATTTAATTCA
*
26031028 TCTTTTCCTA-TTAATTCA
1 TCTTTTCTTATTTAATTCA
26031046 T-TTTT-TTATTTA
1 TCTTTTCTTATTTA
26031058 GATTATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 7 0.27
18 8 0.31
19 9 0.35
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.67
Consensus pattern (19 bp):
TCTTTTCTTATTTAATTCA
Found at i:26041452 original size:13 final size:13
Alignment explanation
Indices: 26041434--26041458 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26041424 TGTGGGTGCA
26041434 CACGGTCGTGTCG
1 CACGGTCGTGTCG
26041447 CACGGTCGTGTC
1 CACGGTCGTGTC
26041459 TAGCGTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CACGGTCGTGTCG
Found at i:26049739 original size:37 final size:37
Alignment explanation
Indices: 26049696--26049774 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
26049686 TTATTACGAA
* * *
26049696 GTCTTACCCGGAC-ATAATCTCCACACGAAGTTATTGG
1 GTCTTACCCGGACAAT-ATCCCCACACGAAGTCATCGG
*
26049733 GTCTTACCCGGACAATATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAATATCCCCACACGAAGTCATCGG
26049770 GTCTT
1 GTCTT
26049775 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAATATCCCCACACGAAGTCATCGG
Found at i:26050067 original size:49 final size:49
Alignment explanation
Indices: 26049893--26050313 Score: 700
Period size: 49 Copynumber: 8.8 Consensus size: 49
26049883 CCCTTCGGGA
* * * * *
26049893 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26049940 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26049987 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26050034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26050083 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26050132 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26050181 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26050228 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26050277 CTTATCAC--ATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATATACACTTTCACATTCATCACATCG
26050314 AATCCTAAAT
Statistics
Matches: 357, Mismatches: 11, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 166 0.46
49 190 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26050090 original size:96 final size:96
Alignment explanation
Indices: 26049893--26050313 Score: 729
Period size: 96 Copynumber: 4.4 Consensus size: 96
26049883 CCCTTCGGGA
* * * * * * * *
26049893 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
26049956 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
26049987 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
26050052 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
26050083 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
26050148 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
26050181 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
26050246 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
26050277 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
26050314 AATCCTAAAT
Statistics
Matches: 313, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
94 47 0.15
96 171 0.55
98 95 0.30
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26050387 original size:145 final size:141
Alignment explanation
Indices: 26049893--26050313 Score: 639
Period size: 145 Copynumber: 2.9 Consensus size: 141
26049883 CCCTTCGGGA
** * * * * * * *
26049893 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGT--CACATATATAC
1 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
26049956 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26050021 TCGGCCATTAGGC
131 TCGG-CA-TAGGC
*
26050034 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACA-A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAT
*
26050099 ACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
26050164 CACATCGGCCATTAGGC
127 CACATCGG-CA-TAGGC
* *
26050181 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
26050246 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
26050311 TCG
131 TCG
26050314 AATCCTAAAT
Statistics
Matches: 261, Mismatches: 13, Indels: 10
0.92 0.05 0.04
Matches are distributed among these distances:
141 9 0.03
143 63 0.24
145 141 0.54
147 48 0.18
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCATAGGC
Found at i:26054377 original size:50 final size:50
Alignment explanation
Indices: 26054299--26054493 Score: 275
Period size: 50 Copynumber: 3.9 Consensus size: 50
26054289 TGATGCTAGG
* *
26054299 GAGATATGAAAGCTAGTGTAAGAACATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
26054349 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * *
26054399 GATAGATGAGAGCCATTGTAAGACCATGTCTGGGATATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * *
26054449 GATATACGAGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
26054494 ACTTTGATGG
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 1 0.01
50 126 0.98
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:26067902 original size:25 final size:26
Alignment explanation
Indices: 26067874--26067927 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
26067864 TTTATCTTTG
*
26067874 TTTATCTT-CTTTAAGTACT-TTTTAT
1 TTTATCTTCCTTTAA-TACTATTTCAT
26067899 TTTATCTTCCTTTAATACTATTTCAT
1 TTTATCTTCCTTTAATACTATTTCAT
26067925 TTT
1 TTT
26067928 TAGGTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.20, C:0.15, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTATCTTCCTTTAATACTATTTCAT
Found at i:26073689 original size:20 final size:20
Alignment explanation
Indices: 26073664--26073703 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26073654 TTAGCTTGTC
*
26073664 AACAAGTCAAAGTCAAACAT
1 AACAAGTCAAAGCCAAACAT
26073684 AACAAGTCAAAGCCAAACAT
1 AACAAGTCAAAGCCAAACAT
26073704 CAAATGCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.23, G:0.10, T:0.12
Consensus pattern (20 bp):
AACAAGTCAAAGCCAAACAT
Found at i:26075194 original size:17 final size:19
Alignment explanation
Indices: 26075172--26075206 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
26075162 TTTAACTTAA
26075172 GGTTAA-AAAGG-TAATTC
1 GGTTAATAAAGGTTAATTC
26075189 GGTTAATAAAGGTTAATT
1 GGTTAATAAAGGTTAATT
26075207 ATAATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (19 bp):
GGTTAATAAAGGTTAATTC
Found at i:26078507 original size:48 final size:48
Alignment explanation
Indices: 26078448--26078718 Score: 210
Period size: 48 Copynumber: 5.6 Consensus size: 48
26078438 TATGTGTGCT
* * *
26078448 AGTGTAAGACCATGTCAGGGATATGACATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
* * * ** *
26078496 AGTTTAAGACCATGTCTGGGACATGGCA-TCGACATTGTTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-CATTATGAGAGCC
* * * * *
26078544 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
* * ** * *
26078592 AGTGTAAGACCATGT-TCGGAACATGGCATCGG-CATTGTTAT-ATGTGTC
1 AGTGTAAGACCATGTCT-GGGACATGGCATTGGCCA-CATTATGA-GAGCC
** *
26078640 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACCGATATATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCA-C-AT-TATGAGAGCC
* * *
26078690 GGGGTAAGACCATGTCCGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
26078719 CAGCATTTTA
Statistics
Matches: 176, Mismatches: 38, Indels: 16
0.77 0.17 0.07
Matches are distributed among these distances:
47 6 0.03
48 132 0.75
49 4 0.02
50 33 0.19
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCCACATTATGAGAGCC
Found at i:26078616 original size:96 final size:96
Alignment explanation
Indices: 26078445--26078719 Score: 306
Period size: 96 Copynumber: 2.8 Consensus size: 96
26078435 TGATATGTGT
* * * * * *
26078445 GCTAGTGTAAGACCATGTCAGGGATATGACATTGGCCACATTATGAGAGCCAGTTTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
*
26078510 TCTGGGACATGGCATCGACATTGTTATGA-GA
66 TCTGGAACATGGCATCGACATTGTTAT-ATGA
* * *
26078541 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGCGATCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
* *
26078606 T-TCGGAACATGGCATCGGCATTGTTATATGT
66 TCT-GGAACATGGCATCGACATTGTTATATGA
* * * *
26078637 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACCGATATATGAGAGTCGGGGTAAGAC
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-C-A-ATATGAGAGCCAGTGTAAGAC
* *
26078700 CATGTCCGGGACATGGCATC
62 CATGTCTGGAACATGGCATC
26078720 AGCATTTTAC
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
95 4 0.03
96 113 0.75
97 1 0.01
98 33 0.22
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
TCTGGAACATGGCATCGACATTGTTATATGA
Found at i:26084062 original size:21 final size:21
Alignment explanation
Indices: 26084012--26084062 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
26084002 TTTGCTTCTC
26084012 TGTTTCTATTTCATTTCTTTTA
1 TGTTT-TATTTCATTTCTTTTA
*
26084034 T-TTATTATTTTATTTAC-TTTA
1 TGTT-TTATTTCATTT-CTTTTA
26084055 TGTTTTAT
1 TGTTTTAT
26084063 ATAATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.18, C:0.08, G:0.04, T:0.71
Consensus pattern (21 bp):
TGTTTTATTTCATTTCTTTTA
Found at i:26084075 original size:8 final size:8
Alignment explanation
Indices: 26084063--26084096 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
26084053 TATGTTTTAT
*
26084063 ATAATATT
1 ATAATATA
26084071 ATAATATA
1 ATAATATA
26084079 ATAATATA
1 ATAATATA
26084087 ATAATATA
1 ATAATATA
26084095 AT
1 AT
26084097 TTATTTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATAATATA
Found at i:26086231 original size:116 final size:116
Alignment explanation
Indices: 26086027--26086260 Score: 432
Period size: 116 Copynumber: 2.0 Consensus size: 116
26086017 AGTTTCAAAA
* *
26086027 CTCGAAACCCAATTCCGTAAATTTTTCCTGGAACTAGACTCATATATATATTTACTAATTGTTTT
1 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
26086092 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
66 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
26086143 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
1 CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
* *
26086208 CTAGAATTTTTGGTCAAGCCAATTAGTACAGTTTATTAGTTAAAATCTCCC
66 CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
26086259 CT
1 CT
26086261 ATTTCAGGGT
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (116 bp):
CTCGAAACCCAATTCCGTAAAATTTTCCTGAAACTAGACTCATATATATATTTACTAATTGTTTT
CTAGAAATTTTGGTCAAGCCAATTAGAACAGTTTATTAGTTAAAATCTCCC
Found at i:26087349 original size:46 final size:45
Alignment explanation
Indices: 26087282--26087447 Score: 183
Period size: 46 Copynumber: 3.6 Consensus size: 45
26087272 TGTAACCCGC
26087282 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGC-TTCGCAT
* * *
26087328 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GA-GCTTCGCAT
* *** *
26087374 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGTA-CATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCG-AGC-TTCGCAT
*
26087421 CCATAAGTGAACTCGAACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
26087448 TGATTTCGGA
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 60 0.61
47 35 0.36
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCTTCGCAT
Found at i:26087401 original size:93 final size:93
Alignment explanation
Indices: 26087290--26087461 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
26087280 GCCCATAAGT
* *
26087290 GAACTCGGACTCAACTCAACGAGCTCG-AGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGTA-CATTCGCATCCATAAGTGAACTCGAACTCAACTCA
26087354 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
26087383 GAACTCGGACTCAACTCAACGAGTTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* **
26087448 TGATTTCGGATGCC
66 CGAGCTCGGATGCC
26087462 CAAATATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGTACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:26089879 original size:30 final size:30
Alignment explanation
Indices: 26089836--26089924 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
26089826 ACAAAATAAC
26089836 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
26089865 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
26089895 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
26089925 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:26089884 original size:15 final size:15
Alignment explanation
Indices: 26089836--26089915 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
26089826 ACAAAATAAC
*
26089836 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
26089850 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
26089865 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
26089880 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
26089895 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
26089910 AAGAAA
1 AAGAAA
26089916 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:26089924 original size:15 final size:15
Alignment explanation
Indices: 26089847--26089924 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
26089837 AGAAAACCGA
26089847 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
26089862 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
26089876 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
26089891 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
26089907 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
26089922 ATA
1 ATA
26089925 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26092922 original size:45 final size:45
Alignment explanation
Indices: 26092858--26093019 Score: 188
Period size: 45 Copynumber: 3.6 Consensus size: 45
26092848 ATGTACCCGC
*
26092858 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
*
26092903 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-ATGC-CTATT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A-T
* *** * *
26092947 ACATCTCTCGAACTCGGACTCAA-TCAACAAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
26092993 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
26093020 TGATTCGGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 15 0.16
45 63 0.66
46 9 0.09
47 4 0.04
48 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:26104513 original size:80 final size:80
Alignment explanation
Indices: 26104361--26104553 Score: 248
Period size: 80 Copynumber: 2.4 Consensus size: 80
26104351 CGGTTTCAGT
* *
26104361 AACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
*
26104426 AACCCGGATTTA-AC
66 AACCCGGATATATAC
*
26104440 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGA-C
** *
26104504 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
26104521 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
26104554 CAGCATTCAA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
79 11 0.11
80 83 0.83
81 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:26104514 original size:40 final size:40
Alignment explanation
Indices: 26104331--26104500 Score: 254
Period size: 40 Copynumber: 4.3 Consensus size: 40
26104321 TCCTCGTTCA
* * ** *
26104331 AATGCCTTCGGGACATAGCCCGG-TTTCAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTT-AACAACTCGCACG
*
26104370 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
26104410 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
26104450 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
26104490 AATGCCTTCGG
1 AATGCCTTCGG
26104501 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 31 0.25
40 92 0.75
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:26112562 original size:20 final size:20
Alignment explanation
Indices: 26112539--26112596 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
26112529 ATACCCTTGA
*
26112539 ATGTACATACGTGCCCCTGT
1 ATGTACATACGTGCCCCTGC
* * *
26112559 ATGTAC-TTCAGTACTCCTGC
1 ATGTACATAC-GTGCCCCTGC
*
26112579 ATGCACATACGTGCCCCT
1 ATGTACATACGTGCCCCT
26112597 ATTTATATTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (20 bp):
ATGTACATACGTGCCCCTGC
Found at i:26112564 original size:40 final size:40
Alignment explanation
Indices: 26112379--26112596 Score: 181
Period size: 40 Copynumber: 5.5 Consensus size: 40
26112369 ATATCCCCTA
* * * * **
26112379 AATGCACATACATACCCCTGTTTGTAGTTTGGTACCCTTG
1 AATGCACATACGTGCCCCTCTTTGTACTTCAGTACCCTTG
* * * * *
26112419 AATGCACATACGTG-CCCTGTTTGTATTTCGGTTCCCTCG
1 AATGCACATACGTGCCCCTCTTTGTACTTCAGTACCCTTG
* * * *
26112458 AATGCACATACGCGCCCCTAC-TTGTACTTCGGTACCCCTA
1 AATGCACATACGTGCCCCT-CTTTGTACTTCAGTACCCTTG
* * * * *
26112498 AACGCACATACATTCCCTTCTTTGTACTTCAATACCCTTG
1 AATGCACATACGTGCCCCTCTTTGTACTTCAGTACCCTTG
* * *
26112538 AATGTACATACGTGCCCCTGTATGTACTTCAGTACTCC-TG
1 AATGCACATACGTGCCCCTCTTTGTACTTCAGTAC-CCTTG
*
26112578 CATGCACATACGTGCCCCT
1 AATGCACATACGTGCCCCT
26112597 ATTTATATTT
Statistics
Matches: 142, Mismatches: 32, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
39 35 0.25
40 105 0.74
41 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.32
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTCTTTGTACTTCAGTACCCTTG
Found at i:26115169 original size:34 final size:34
Alignment explanation
Indices: 26115103--26115169 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
26115093 CCGGAAAATA
* *
26115103 TTAAGTTCTGTTTGAATGATGAATTTTAATGGAG
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
*
26115137 TTAAGTTCCGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTCCGTTTGAATGATGAATTTCAATGGA
26115170 TATATGTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (34 bp):
TTAAGTTCCGTTTGAATGATGAATTTCAATGGAG
Found at i:26116720 original size:38 final size:38
Alignment explanation
Indices: 26116616--26116763 Score: 174
Period size: 38 Copynumber: 3.9 Consensus size: 38
26116606 CTGAGGTATA
* * * * *
26116616 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTA
1 AACCCGAATATAATACCAGCACGAAGCCTGCGGGA-TTT
* *
26116655 AACTC-AGATATAATACCAGCAC-TAGCCTGCGGGATTT
1 AACCCGA-ATATAATACCAGCACGAAGCCTGCGGGATTT
26116692 AACCCGAATATAATACCAGCACGAAGCCTGCGGGATTT
1 AACCCGAATATAATACCAGCACGAAGCCTGCGGGATTT
* * *
26116730 AACCCGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCGAATATAATACCAGCACGAAGCCTGCGGG
26116764 TCTTTAAGCC
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
37 21 0.22
38 57 0.60
39 17 0.18
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (38 bp):
AACCCGAATATAATACCAGCACGAAGCCTGCGGGATTT
Found at i:26116758 original size:76 final size:76
Alignment explanation
Indices: 26116616--26116763 Score: 199
Period size: 76 Copynumber: 1.9 Consensus size: 76
26116606 CTGAGGTATA
* *
26116616 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTAAACTCAGATATAATACCAGCACTAGC
1 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTAAACCCAGATATAATACCAGCACAAGC
26116681 CTGCGGGATTT
66 CTGCGGGATTT
* * * * * * *
26116692 AACCCGAATATAATACCAGCACGAAGCCTGCGGGA-TTTAACCCGGATATATTACCAGCACAAAG
1 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTAAACCCAGATATAATACCAGCAC-AAG
26116756 CCTGCGGG
65 CCTGCGGG
26116764 TCTTTAAGCC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
75 21 0.34
76 41 0.66
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (76 bp):
AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTAAACCCAGATATAATACCAGCACAAGC
CTGCGGGATTT
Found at i:26120925 original size:28 final size:28
Alignment explanation
Indices: 26120894--26120969 Score: 82
Period size: 29 Copynumber: 2.7 Consensus size: 28
26120884 ACTGACCGAT
26120894 CTCGCACACATAGTGCTCGATTGA-AGAA
1 CTCGCACACATAGTGCTCGATT-ACAGAA
* * * *
26120922 CTCGTACACATAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGATTACAGAA
*
26120951 CTTGCACACATAGTGCTCG
1 CTCGCACACATAGTGCTCG
26120970 GTTCAAGGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGATTACAGAA
Found at i:26121231 original size:43 final size:43
Alignment explanation
Indices: 26121155--26121458 Score: 482
Period size: 43 Copynumber: 7.1 Consensus size: 43
26121145 TGCTCGAATT
** *
26121155 ACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* * *
26121198 ACCAGCATGAAGCCTGCTAGGCATGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* * *
26121241 ACTGGCACAAAACCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
26121284 ACCGGCACGAAGCCTACTAGGCACGAAGGCCCAAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
*
26121327 ACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
* *
26121370 ACCGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACATATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
26121413 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
1 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
26121456 ACC
1 ACC
26121459 AAGTTTTCAT
Statistics
Matches: 238, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 238 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATC
Found at i:26123098 original size:38 final size:38
Alignment explanation
Indices: 26123002--26123150 Score: 140
Period size: 38 Copynumber: 3.9 Consensus size: 38
26122992 CGAGGTATAA
* * * * *
26123002 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGA-TTT
* * *
26123041 AAACTC-AGATATAAT-CCAGCACTAGGCCTGCGGGATTT
1 -AACCCGA-ATATAATACCAGCACAAAGCCTGCGGGATTT
* *
26123079 AACCCGAATATAATACCAGCACGAAGCCTGCGGAATTT
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
* * *
26123117 AACCTGGATATATTACCAGCACAAAGCCTGCGGG
1 AACCCGAATATAATACCAGCACAAAGCCTGCGGG
26123151 TCTTTAAGCC
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
37 11 0.12
38 53 0.58
39 18 0.20
40 9 0.10
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (38 bp):
AACCCGAATATAATACCAGCACAAAGCCTGCGGGATTT
Found at i:26123157 original size:77 final size:77
Alignment explanation
Indices: 26123002--26123150 Score: 185
Period size: 76 Copynumber: 1.9 Consensus size: 77
26122992 CGAGGTATAA
* * * *
26123002 AACCCAAACATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATCCAGCACTAGG
1 AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAATCCAGCACAAAG
26123067 CCTGCGGGATTT
66 CCTGCGGGATTT
* * * * * *
26123079 AACCCGAATATAATACCAGCACGAAGCCTGC-GGAATTTAACCT-GGATATATTACCAGCACAAA
1 AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAAT-CCAGCACAAA
26123142 GCCTGCGGG
65 GCCTGCGGG
26123151 TCTTTAAGCC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
75 7 0.11
76 27 0.44
77 27 0.44
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (77 bp):
AACCCGAACATAACACCAGCACGAAGCCTACGGGAATTTAAACTCAGATATAATCCAGCACAAAG
CCTGCGGGATTT
Found at i:26127776 original size:21 final size:21
Alignment explanation
Indices: 26127747--26127808 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
26127737 TTCGGGTGGA
26127747 TTAGCTCTTACGAGCTTCTGT
1 TTAGCTCTTACGAGCTTCTGT
* *
26127768 TTAGTTCTTACGAG-TTGTTGT
1 TTAGCTCTTACGAGCTT-CTGT
*
26127789 TCAGCTCTTACGAGCTTCTG
1 TTAGCTCTTACGAGCTTCTG
26127809 CTGGCATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 2 0.06
21 30 0.88
22 2 0.06
ACGTcount: A:0.15, C:0.21, G:0.21, T:0.44
Consensus pattern (21 bp):
TTAGCTCTTACGAGCTTCTGT
Found at i:26128028 original size:26 final size:26
Alignment explanation
Indices: 26127968--26128020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26127958 AGATGAATTA
*
26127968 TTGATTGAAGTTGTGAATGACAAGTT
1 TTGATTGAAGTTATGAATGACAAGTT
26127994 TTGATTGAAGTTATGAATGACAAGTT
1 TTGATTGAAGTTATGAATGACAAGTT
26128020 T
1 T
26128021 CTTTTGAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (26 bp):
TTGATTGAAGTTATGAATGACAAGTT
Found at i:26130759 original size:34 final size:33
Alignment explanation
Indices: 26130713--26130791 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 33
26130703 GGTTGTATTC
* * *
26130713 TCTTTTCTTTTGAGTTCTTTCCAGATACCTTTT
1 TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
*
26130746 TCTTCTTCCTTTGAGTTCTTGCTAGACACCTTTT
1 TCTT-TTCCTTTGAGTTCTTGCCAGACACCTTTT
26130780 TCTTATTCCTTT
1 TCTT-TTCCTTT
26130792 TTGTCATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
33 4 0.10
34 36 0.90
ACGTcount: A:0.11, C:0.24, G:0.09, T:0.56
Consensus pattern (33 bp):
TCTTTTCCTTTGAGTTCTTGCCAGACACCTTTT
Found at i:26132060 original size:27 final size:26
Alignment explanation
Indices: 26132030--26132291 Score: 260
Period size: 27 Copynumber: 9.7 Consensus size: 26
26132020 TCTCGGTTCA
*
26132030 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCC-CAATTTG
* *
26132057 TAAAATTACTAAAATAACCCCGATTTG
1 TAAAATTACTGAAAT-ACCCCAATTTG
* *
26132084 TAAAATTA-TCGAAGTACCCCCAGTTTG
1 TAAAATTACT-GAAATA-CCCCAATTTG
*
26132111 TAAAATTACCGAAATACCCCTAATTTG
1 TAAAATTACTGAAATACCCC-AATTTG
*
26132138 TAAAATTACTAAAATACCACCAATTTG
1 TAAAATTACTGAAATACC-CCAATTTG
**
26132165 TAAAATTA-TCGAAATACCCTCGGTTTG
1 TAAAATTACT-GAAATACCC-CAATTTG
*
26132192 TAAAATTATTGAAATACCCCCAATTTG
1 TAAAATTACTGAAATA-CCCCAATTTG
*
26132219 TAAAATT-CTTGAAATACCCCCAGTTTG
1 TAAAATTAC-TGAAATA-CCCCAATTTG
* * *
26132246 CAAAATTACTAAAATACCCCCAATTTT
1 TAAAATTACTGAAATA-CCCCAATTTG
*
26132273 TGAAATTACTGAAATACCC
1 TAAAATTACTGAAATACCC
26132292 TTGTAGTGTA
Statistics
Matches: 199, Mismatches: 24, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
26 11 0.06
27 177 0.89
28 11 0.06
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAATTACTGAAATACCCCAATTTG
Found at i:26132165 original size:81 final size:80
Alignment explanation
Indices: 26132030--26132291 Score: 314
Period size: 81 Copynumber: 3.2 Consensus size: 80
26132020 TCTCGGTTCA
* *
26132030 TAAAATTACTGAAATA-CCCTCGATTTGTAAAATTACTAAAATAACCCCGATTTGTAAAATTATC
1 TAAAATTACTGAAATACCCCT-AATTTGTAAAATTACTAAAAT-ACCCCAATTTGTAAAATTATC
*
26132094 GAAGTACCCCCAGTTTG
64 GAAATACCCCCAGTTTG
*
26132111 TAAAATTACCGAAATACCCCTAATTTGTAAAATTACTAAAATACCACCAATTTGTAAAATTATCG
1 TAAAATTACTGAAATACCCCTAATTTGTAAAATTACTAAAATACC-CCAATTTGTAAAATTATCG
* *
26132176 AAATACCCTCGGTTTG
65 AAATACCCCCAGTTTG
* * * * *
26132192 TAAAATTATTGAAATACCCCCAATTTGTAAAATT-CTTGAAATACCCCCAGTTTGCAAAATTA-C
1 TAAAATTACTGAAATACCCCTAATTTGTAAAATTAC-TAAAATA-CCCCAATTTGTAAAATTATC
* * *
26132255 TAAAATACCCCCAATTTT
64 -GAAATACCCCCAGTTTG
*
26132273 TGAAATTACTGAAATACCC
1 TAAAATTACTGAAATACCC
26132292 TTGTAGTGTA
Statistics
Matches: 157, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
80 5 0.03
81 146 0.93
82 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TAAAATTACTGAAATACCCCTAATTTGTAAAATTACTAAAATACCCCAATTTGTAAAATTATCGA
AATACCCCCAGTTTG
Found at i:26134235 original size:16 final size:16
Alignment explanation
Indices: 26134216--26134247 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26134206 AATTGTTTTA
26134216 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
26134232 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
26134248 ACTCCGTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:26134573 original size:51 final size:50
Alignment explanation
Indices: 26134454--26134782 Score: 222
Period size: 50 Copynumber: 6.6 Consensus size: 50
26134444 TCTCTGGTAG
* * * ** * *
26134454 CATAGTAGCCTACACTTAGTACTACACACATGA-CTTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-GAATTATCGGGTACA
* * *
26134504 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAGCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TTATCGGGTACA
* ** * *
26134555 CATAGTAGCCTGCACTTAGTACTACACA--TGCAACCTATCAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAT-TATCGGGTACA
* * ** ** *
26134605 CGTAGTAG-CTGCACTTAGTACTACACACGTGA-CTTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATC-GAATTATCGGGTACA
* * ** *
26134654 CGTAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAAAGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-TTATCGGGTACA
* * * * ** * *
26134705 CATAGAAGCCTGCACTTAATACTACACATGCGA-CCTATCAATC-GATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT-TATCGGGTACA
*
26134754 CGTAGTAGCCTGCACTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
26134783 ATGACTCACA
Statistics
Matches: 217, Mismatches: 51, Indels: 23
0.75 0.18 0.08
Matches are distributed among these distances:
49 69 0.32
50 79 0.36
51 69 0.32
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTATCGGGTACA
Found at i:26134574 original size:101 final size:98
Alignment explanation
Indices: 26134449--26134636 Score: 279
Period size: 101 Copynumber: 1.9 Consensus size: 98
26134439 GAAGCTCTCT
* *
26134449 GGTAGCATAGTAGCCTACACTTAGTACTACACACATG-ACTTAACCATCTGATACACGTAGTAGC
1 GGTAGCATAGTAGCCTACACTTAGTACT--ACACATGAACCTAACAATCTGATACACGTAGTAG-
26134513 CTGCACTTAGTACTACACACGTGATCGAAGTTAGCG
63 CTGCACTTAGTACTACACACGTGATCGAAGTTAGCG
* * *
26134549 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTA-GCATAGTAGCCTACACTTAGTACTACACATG-AACCTAACAATCTGATACACGTAGTAGC
26134614 TGCACTTAGTACTACACACGTGA
64 TGCACTTAGTACTACACACGTGA
26134637 CTTAACCATT
Statistics
Matches: 80, Mismatches: 5, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
99 7 0.09
100 28 0.35
101 45 0.56
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (98 bp):
GGTAGCATAGTAGCCTACACTTAGTACTACACATGAACCTAACAATCTGATACACGTAGTAGCTG
CACTTAGTACTACACACGTGATCGAAGTTAGCG
Found at i:26134683 original size:150 final size:150
Alignment explanation
Indices: 26134456--26134788 Score: 560
Period size: 150 Copynumber: 2.2 Consensus size: 150
26134446 TCTGGTAGCA
*
26134456 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
* ** * *
26134521 AGTACTACACACGTGATCGAAGTTAGCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
*
26134586 AACCTATCAATCTGGTACACG
131 AACCTATCAATC-GATACACG
* *
26134607 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
26134671 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
66 AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
*
26134736 GACCTATCAATCGATACACG
131 AACCTATCAATCGATACACG
26134756 TAGTAGCCTGCACTTAGTACTACACACATGACT
1 TAGTAGCCTGCACTTAGTACTACACACATGACT
26134789 CACAACAGAT
Statistics
Matches: 170, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
149 13 0.08
150 151 0.89
151 6 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
AGCACTACACACGTGATCGAAGTTAAAGGGTACGCATAGAAGCCTGCACTTAATACTACACATGC
AACCTATCAATCGATACACG
Found at i:26134703 original size:100 final size:100
Alignment explanation
Indices: 26134599--26134782 Score: 253
Period size: 100 Copynumber: 1.8 Consensus size: 100
26134589 CTATCAATCT
* * * * * * *
26134599 GGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCT-ACCAATCGATACACGTAGTAGC
26134663 CTGCACTTAGCACTACACACGTGATCGAAGTTAAAG
65 CTGCACTTAGCACTACACACGTGATCGAAGTTAAAG
* * *
26134699 GGTACGCATAGAAGCCTGCACTTAATACTACACATGCGACCTATCAATCGATACACGTAGTAGCC
1 GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCTACCAATCGATACACGTAGTAGCC
*
26134764 TGCACTTAGTACTACACAC
66 TGCACTTAGCACTACACAC
26134783 ATGACTCACA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 49 0.68
101 23 0.32
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (100 bp):
GGTACACATAGAAGCCTGCACTTAATACTACACACGCGACCTACCAATCGATACACGTAGTAGCC
TGCACTTAGCACTACACACGTGATCGAAGTTAAAG
Found at i:26134777 original size:49 final size:50
Alignment explanation
Indices: 26134456--26134787 Score: 285
Period size: 49 Copynumber: 6.6 Consensus size: 50
26134446 TCTGGTAGCA
* * * * *
26134456 TAGTAGCCTACACTTAGTACTACACACATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
** * * * * * *
26134506 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-TAGCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* ** *
26134557 TAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* * * *
26134607 TAGTAG-CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
* ** * ** * * *
26134656 TAGTAGCCTGCACTTAGCACTACACACGTGATCGAAGTTAA-AGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGATACACG
* * * *
26134707 TAGAAGCCTGCACTTAATACTACACATGCGACCTATCAATC-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
*
26134756 TAGTAGCCTGCACTTAGTACTACACACATGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
26134788 TCACAACAGA
Statistics
Matches: 218, Mismatches: 57, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
49 77 0.35
50 70 0.32
51 70 0.32
52 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGATACACG
Found at i:26135164 original size:19 final size:20
Alignment explanation
Indices: 26135136--26135182 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
26135126 AAGAACATGT
26135136 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
26135157 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
26135176 TATATAT
1 TATATAT
26135183 ATATTTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:26138434 original size:24 final size:23
Alignment explanation
Indices: 26138407--26138451 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
26138397 AATGGACTAA
26138407 GGAGAAAATCAAGGAGAAGATTGG
1 GGAGAAAATCAAGGAG-AGATTGG
* *
26138431 GGAGGAAATCATGGAGAGATT
1 GGAGAAAATCAAGGAGAGATT
26138452 TTAGGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.04, G:0.38, T:0.16
Consensus pattern (23 bp):
GGAGAAAATCAAGGAGAGATTGG
Found at i:26144440 original size:12 final size:12
Alignment explanation
Indices: 26144408--26144444 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
26144398 ATTAAGATTG
*
26144408 CTCATTGAACTT
1 CTCATTGAACTA
26144420 CTC-TTGAACTA
1 CTCATTGAACTA
26144431 CTCATTGAAC-A
1 CTCATTGAACTA
26144442 CTC
1 CTC
26144445 GGAATACTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35
Consensus pattern (12 bp):
CTCATTGAACTA
Found at i:26145035 original size:31 final size:31
Alignment explanation
Indices: 26144948--26145029 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
26144938 CTTCCTGCAT
* * *
26144948 TAAAATCCAACCAAATACAACA-AATATAGCA
1 TAAAATACAACCAAAAACAA-ATAATTTAGCA
*
26144979 TAAAATGCAACCAAAAACAAATAATTTAGCA
1 TAAAATACAACCAAAAACAAATAATTTAGCA
26145010 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
26145030 TTAATTCTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
30 1 0.02
31 27 0.60
32 17 0.38
ACGTcount: A:0.61, C:0.20, G:0.04, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAAATAATTTAGCA
Found at i:26145313 original size:21 final size:21
Alignment explanation
Indices: 26145261--26145336 Score: 91
Period size: 21 Copynumber: 3.6 Consensus size: 21
26145251 TCTGCTGCCA
*
26145261 TCGCTGCTGCCTTTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
26145282 ACACT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCTCCC
*
26145303 TCGCTGCTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
*
26145324 TCTCTGCTGCCTC
1 TCGCTGCTGCCTC
26145337 AGCTCTAAGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 1 0.02
21 43 0.96
22 1 0.02
ACGTcount: A:0.03, C:0.50, G:0.18, T:0.29
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:26145968 original size:17 final size:19
Alignment explanation
Indices: 26145931--26145968 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26145921 TACAATATAG
26145931 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTATTTAA
26145950 TAGTAAAAAT-TTA-TTAA
1 TAGTAAAAATATTATTTAA
26145967 TA
1 TA
26145969 TTTGAAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TAGTAAAAATATTATTTAA
Found at i:26150983 original size:9 final size:9
Alignment explanation
Indices: 26150969--26151287 Score: 276
Period size: 9 Copynumber: 36.2 Consensus size: 9
26150959 TATTTAAGTA
*
26150969 TTATGTAAG
1 TTATATAAG
*
26150978 TTATGTAAG
1 TTATATAAG
*
26150987 TTATGATATG
1 TTAT-ATAAG
* *
26150997 ATATAT-AT
1 TTATATAAG
*
26151005 TTATGTAAG
1 TTATATAAG
*
26151014 TTATAT-AT
1 TTATATAAG
*
26151022 TTATCTAAG
1 TTATATAAG
*
26151031 TTCTATAAG
1 TTATATAAG
*
26151040 TTAAATAAG
1 TTATATAAG
*
26151049 TTATGTAAG
1 TTATATAAG
*
26151058 TTATAT-AT
1 TTATATAAG
*
26151066 TTATCTAAG
1 TTATATAAG
26151075 TTATATAAG
1 TTATATAAG
*
26151084 TTATGTAAG
1 TTATATAAG
*
26151093 TTATGTAAG
1 TTATATAAG
*
26151102 TTATAT-AT
1 TTATATAAG
*
26151110 TTATCTAAG
1 TTATATAAG
26151119 TTATATAAG
1 TTATATAAG
*
26151128 TTATGTAAG
1 TTATATAAG
*
26151137 TTATGTAAG
1 TTATATAAG
*
26151146 TTATAT-AT
1 TTATATAAG
*
26151154 TTATCTAAG
1 TTATATAAG
26151163 TTATATAAG
1 TTATATAAG
*
26151172 TTATCTAAG
1 TTATATAAG
*
26151181 TTATGTAAG
1 TTATATAAG
*
26151190 TTATAT-AT
1 TTATATAAG
*
26151198 TTATCTAAG
1 TTATATAAG
*
26151207 TTATGTAAG
1 TTATATAAG
*
26151216 TTATAT-AT
1 TTATATAAG
*
26151224 TTATCTAAG
1 TTATATAAG
*
26151233 TTATGTAAG
1 TTATATAAG
*
26151242 TTGTATAAG
1 TTATATAAG
*
26151251 TTATAT-AT
1 TTATATAAG
*
26151259 TTATCTAAG
1 TTATATAAG
26151268 TTATATAAG
1 TTATATAAG
*
26151277 TTATGTAAG
1 TTATATAAG
26151286 TT
1 TT
26151288 TTGTAAGTAA
Statistics
Matches: 246, Mismatches: 55, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
8 46 0.19
9 194 0.79
10 6 0.02
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATATAAG
Found at i:26151053 original size:44 final size:44
Alignment explanation
Indices: 26150978--26151280 Score: 396
Period size: 44 Copynumber: 6.9 Consensus size: 44
26150968 ATTATGTAAG
* * * *
26150978 TTATGTAAGTTATGATATGATATAT-ATTTATGTAAGTTATATAT
1 TTATCTAAGTTAT-ATAAGTTATATAAGTTATGTAAGTTATATAT
* *
26151022 TTATCTAAGTTCTATAAGTTAAATAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
*
26151066 TTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
*
26151110 TTATCTAAGTTATATAAGTTATGTAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
*
26151154 TTATCTAAGTTATATAAGTTATCTAAGTTATGTAAGTTATATAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
* * * * *
26151198 TTATCTAAGTTATGTAAGTTATAT-ATTTATCTAAGTTATGTAAG
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATAT-AT
* * * * *
26151242 TTGTATAAGTTATAT-ATTTATCTAAGTTATATAAGTTAT
1 TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTAT
26151281 GTAAGTTTTG
Statistics
Matches: 233, Mismatches: 23, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
43 28 0.12
44 205 0.88
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (44 bp):
TTATCTAAGTTATATAAGTTATATAAGTTATGTAAGTTATATAT
Found at i:26151075 original size:35 final size:36
Alignment explanation
Indices: 26150969--26151287 Score: 258
Period size: 35 Copynumber: 9.1 Consensus size: 36
26150959 TATTTAAGTA
* * * * *
26150969 TTATGTAAGTTATGTAAGTTATGATATGATATAT-AT
1 TTATATAAGTTATGTAAGTTAT-ATAAGTTATCTAAG
* * * * * *
26151005 TTATGTAAGTTATAT-ATTTATCTAAGTTCTATAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* *
26151040 TTAAATAAGTTATGTAAGTTATAT-ATTTATCTAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* * *
26151075 TTATATAAGTTATGTAAGTTATGTAAGTTATAT-AT
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* * * *
26151110 TTATCTAAGTTATATAAGTTATGTAAGTTATGTAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* *
26151146 TTATAT-ATTTATCTAAGTTATATAAGTTATCTAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* * * * *
26151181 TTATGTAAGTTATAT-ATTTATCTAAGTTATGTAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* * * * *
26151216 TTATAT-ATTTATCTAAGTTATGTAAGTTGTATAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
* * *
26151251 TTATAT-ATTTATCTAAGTTATATAAGTTATGTAAG
1 TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
26151286 TT
1 TT
26151288 TTGTAAGTAA
Statistics
Matches: 232, Mismatches: 45, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
34 13 0.06
35 181 0.78
36 38 0.16
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.48
Consensus pattern (36 bp):
TTATATAAGTTATGTAAGTTATATAAGTTATCTAAG
Found at i:26151443 original size:29 final size:29
Alignment explanation
Indices: 26151411--26151480 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
26151401 TAAATTGCGG
* *
26151411 ATTAAATAATATTTATAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
26151440 ATTAAATAATACTGAAAAAAATTATTTTA
1 ATTAAATAATATTGAAAAAAATTATTTTA
*
26151469 ATTCAATAATAT
1 ATTAAATAATAT
26151481 ACACGTCGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (29 bp):
ATTAAATAATATTGAAAAAAATTATTTTA
Found at i:26151684 original size:24 final size:24
Alignment explanation
Indices: 26151652--26151698 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26151642 TTAACTTAAA
* *
26151652 TGATAAAACGGGCGATAATATTTG
1 TGATAAAACGGACGAGAATATTTG
26151676 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGGACGAGAATATTT
26151699 CAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTG
Found at i:26151815 original size:64 final size:64
Alignment explanation
Indices: 26151746--26151879 Score: 250
Period size: 64 Copynumber: 2.1 Consensus size: 64
26151736 ATATTTTATT
*
26151746 AAATATTTGTATATTAGATGGGACATATTATATTAATAAATAAATTTATTAAAAATCATGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
*
26151810 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCGTGATAG
1 AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
26151874 AAATAT
1 AAATAT
26151880 AGAAATATTA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.38
Consensus pattern (64 bp):
AAATATTTGTATATTAGATGGGACATATTATATCAATAAATAAATTTATTAAAAATCATGATAG
Found at i:26152681 original size:6 final size:7
Alignment explanation
Indices: 26152662--26152687 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26152652 ACATATAAAC
26152662 GCAAAAA
1 GCAAAAA
26152669 GCAAAAA
1 GCAAAAA
26152676 GCAAAAA
1 GCAAAAA
26152683 GCAAA
1 GCAAA
26152688 TCTATAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.69, C:0.15, G:0.15, T:0.00
Consensus pattern (7 bp):
GCAAAAA
Found at i:26154574 original size:20 final size:20
Alignment explanation
Indices: 26154551--26154595 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
26154541 TTTGATTCGA
*
26154551 GGAAATATTTAGGGATTAGG
1 GGAAATAGTTAGGGATTAGG
*
26154571 GGAAA-AGTTAGGGATTTGG
1 GGAAATAGTTAGGGATTAGG
26154590 GGAAAT
1 GGAAAT
26154596 TTGGGTGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.27
Consensus pattern (20 bp):
GGAAATAGTTAGGGATTAGG
Found at i:26155839 original size:29 final size:29
Alignment explanation
Indices: 26155807--26155864 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
26155797 TTAGAGTTTA
26155807 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
26155836 GATCATGGGTTATGATTTAGGGGTTAGGC
1 GATCATGGGTTATGATTTAGGGGTTAGGC
26155865 TTTATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.21, C:0.07, G:0.38, T:0.34
Consensus pattern (29 bp):
GATCATGGGTTATGATTTAGGGGTTAGGC
Found at i:26156571 original size:41 final size:41
Alignment explanation
Indices: 26156428--26156558 Score: 187
Period size: 41 Copynumber: 3.2 Consensus size: 41
26156418 TACCTTTTGT
*
26156428 GGCG-TTTGGA-AATAAAGCGCCACTA-TATCTCAGTTTTTTGC
1 GGCGTTTTGGATAA-AAA-CGCCACTATTA-CTCAGTTTTTAGC
*
26156469 GGCGTTTTGGATGAAAACGCCACTATTACTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
26156510 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
1 GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
*
26156551 GGTGTTTT
1 GGCGTTTT
26156559 TGTTTCAAAC
Statistics
Matches: 83, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
41 71 0.86
42 11 0.13
43 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
GGCGTTTTGGATAAAAACGCCACTATTACTCAGTTTTTAGC
Found at i:26171079 original size:28 final size:28
Alignment explanation
Indices: 26171044--26171101 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
26171034 AACTCAATTA
26171044 TATCATATTTTTAATTTTTTTTAGTATT
1 TATCATATTTTTAATTTTTTTTAGTATT
26171072 TATCATATTTTTAATTTTTTTTAGTATT
1 TATCATATTTTTAATTTTTTTTAGTATT
26171100 TA
1 TA
26171102 CTCCGGTTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.67
Consensus pattern (28 bp):
TATCATATTTTTAATTTTTTTTAGTATT
Found at i:26174681 original size:27 final size:27
Alignment explanation
Indices: 26174651--26174711 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
26174641 CGACTTGTAA
26174651 AATTACCAAAGTACTCC-CGATTTACAG
1 AATTACCAAAGTAC-CCTCGATTTACAG
****
26174678 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAG
26174705 AATTACC
1 AATTACC
26174712 GTTTTACCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 27 0.93
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTACAG
Found at i:26174712 original size:27 final size:27
Alignment explanation
Indices: 26174668--26175212 Score: 663
Period size: 27 Copynumber: 20.2 Consensus size: 27
26174658 AAAGTACTCC
26174668 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
26174695 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
26174722 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26174749 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26174776 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** * **
26174803 CGATTTTTAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26174830 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26174857 C-AGTTTACAAAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26174884 CGATTTACAGAGTTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26174911 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26174938 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26174965 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
26174992 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
26175019 CGATTTATC-GAATTACCGTTTTACCCT
1 CGATTTA-CAGAATTACCGTTTTACCCT
*
26175046 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
26175073 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
26175100 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * ** *
26175127 TGATTTATAGAATTATTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26175154 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
26175181 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26175208 TGATT
1 CGATT
26175213 GTGAAATTAC
Statistics
Matches: 454, Mismatches: 50, Indels: 28
0.85 0.09 0.05
Matches are distributed among these distances:
26 7 0.02
27 440 0.97
28 7 0.02
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:26175247 original size:27 final size:27
Alignment explanation
Indices: 26175217--26175393 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
26175207 TTGATTGTGA
* * *
26175217 AATTACTGAAATACCCCTATAGGCTTG
1 AATTACTAAAATACCCCTATAGGGTAG
26175244 AATTACTAAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
*
26175271 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
** *
26175298 AATTACCGAAATACTCTCGTA-A-GGTAG
1 AATTACTAAAATAC-C-CCTATAGGGTAG
* * *
26175325 AATTA-TCAAAATACCCTTGTAAGGTAG
1 AATTACT-AAAATACCCCTATAGGGTAG
* *
26175352 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCCTATAGGGTAG
* *
26175379 AATTACCAAGATACC
1 AATTACTAAAATACC
26175394 TTTGTGGGTA
Statistics
Matches: 124, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.02
26 2 0.02
27 114 0.92
28 3 0.02
29 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (27 bp):
AATTACTAAAATACCCCTATAGGGTAG
Found at i:26176871 original size:93 final size:93
Alignment explanation
Indices: 26176739--26176909 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
26176729 GCCCATAAGT
* * *
26176739 GAACTCGGACTCATCTCAACAAGCTCGGGCGTTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
26176804 CGAGCTT-GGATGCCTAGTTACATCTCTC
66 CGAG-TTCGGATGCCTAGTTACATCTCTC
* * ** *
26176832 GAACTCGGACTCAACTCAACGAGTTCGGACATTGGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
26176897 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26176910 TCAACCATCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:26176899 original size:46 final size:46
Alignment explanation
Indices: 26176731--26176906 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
26176721 TGTAACCCGC
* * * * * *
26176731 CCATAAGTGAACTCGGACTCATCTCAACAAGCTCGGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCCAT
26176777 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GG--A-TGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTGCC-A--T
* *** *
26176823 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTGCCAT
*
26176870 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26176907 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
46 67 0.63
47 31 0.29
49 2 0.02
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCCAT
Found at i:26178354 original size:27 final size:26
Alignment explanation
Indices: 26178316--26178395 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 26
26178306 CGGAGGAAGC
*
26178316 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
26178343 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
26178369 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
26178396 ATTGACCGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 9 0.18
27 40 0.82
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:26178518 original size:22 final size:22
Alignment explanation
Indices: 26178486--26178544 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26178476 CCCGTTATTA
*
26178486 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
26178508 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
26178530 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
26178545 ACGCATTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:26178716 original size:25 final size:27
Alignment explanation
Indices: 26178684--26178779 Score: 85
Period size: 27 Copynumber: 3.7 Consensus size: 27
26178674 TATGGCTTTG
*
26178684 TGCCACATAT-TCTGTT-AGGTGGCTT
1 TGCCACATATATCTGTTCAGGTGGCTC
*
26178709 TGCCACAT-TATCTGATTCTGGTGGCTC
1 TGCCACATATATCTG-TTCAGGTGGCTC
* *
26178736 TGCCACA-ATATCTGTATCTGGTGACTC
1 TGCCACATATATCTGT-TCAGGTGGCTC
* *
26178763 TGTCAC-GATATCTGTTC
1 TGCCACATATATCTGTTC
26178780 TGACAGCCAT
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
24 1 0.02
25 12 0.20
26 5 0.08
27 43 0.70
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
TGCCACATATATCTGTTCAGGTGGCTC
Found at i:26178731 original size:27 final size:27
Alignment explanation
Indices: 26178701--26178781 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
26178691 TATTCTGTTA
* *
26178701 GGTGGCTTTGCCACATTATCTG-ATTCT
1 GGTGGCTCTGCCACAATATCTGTA-TCT
26178728 GGTGGCTCTGCCACAATATCTGTATCT
1 GGTGGCTCTGCCACAATATCTGTATCT
* * *
26178755 GGTGACTCTGTCACGATATCTGT-TCT
1 GGTGGCTCTGCCACAATATCTGTATCT
26178781 G
1 G
26178782 ACAGCCATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 4 0.08
27 43 0.90
28 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATCT
Found at i:26178909 original size:6 final size:6
Alignment explanation
Indices: 26178900--26179001 Score: 93
Period size: 6 Copynumber: 16.8 Consensus size: 6
26178890 TTGCATTCAC
* *
26178900 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
26178949 -TTACTA ATACTG ATTCTA ATTCTG ATTCTG -TTACTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
26178997 ATTCT
1 ATTCT
26179002 CATTTTGGTT
Statistics
Matches: 77, Mismatches: 12, Indels: 14
0.75 0.12 0.14
Matches are distributed among these distances:
5 5 0.06
6 66 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:26179019 original size:30 final size:30
Alignment explanation
Indices: 26178900--26179001 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
26178890 TTGCATTCAC
*
26178900 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
*
26178931 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
26178961 ATTCTAATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
26178991 ATTCTGATTCT
1 ATTCTGATTCT
26179002 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 46 0.70
31 20 0.30
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:26197288 original size:38 final size:39
Alignment explanation
Indices: 26197226--26197305 Score: 126
Period size: 38 Copynumber: 2.1 Consensus size: 39
26197216 TACTTTCTAT
* *
26197226 TTGGCGTGATTCGAGTGGATCAGCTCTTACGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
*
26197265 TTGGCGTG-TTCGAGAGGACCAGCTCTTATGAGCTTCTG
1 TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
26197303 TTG
1 TTG
26197306 ACAATATACT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
38 30 0.79
39 8 0.21
ACGTcount: A:0.15, C:0.20, G:0.31, T:0.34
Consensus pattern (39 bp):
TTGGCGTGATTCGAGAGGACCAGCTCTTACGAGCTTCTG
Found at i:26198008 original size:12 final size:12
Alignment explanation
Indices: 26197988--26198019 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26197978 CTAATGCCAC
*
26197988 TTTGAGTTGGTA
1 TTTGGGTTGGTA
26198000 TTTGGGTTGGTA
1 TTTGGGTTGGTA
26198012 TTTGGGTT
1 TTTGGGTT
26198020 TCTTAGGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.00, G:0.38, T:0.53
Consensus pattern (12 bp):
TTTGGGTTGGTA
Found at i:26198744 original size:25 final size:25
Alignment explanation
Indices: 26198710--26198771 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
26198700 TATGATTTAT
* * * *
26198710 TATGCTATGATTCGATTTGGTATGA
1 TATGCTATGATACGATCTAGCATGA
*
26198735 TATGTTATGATACGATCTAGCATGA
1 TATGCTATGATACGATCTAGCATGA
26198760 TATGCTATGATA
1 TATGCTATGATA
26198772 TGATAAGTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (25 bp):
TATGCTATGATACGATCTAGCATGA
Found at i:26201473 original size:9 final size:9
Alignment explanation
Indices: 26201459--26201484 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26201449 CATTGAACAT
26201459 TATAATTTG
1 TATAATTTG
26201468 TATAATTTG
1 TATAATTTG
26201477 TATAATTT
1 TATAATTT
26201485 TAATTCTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.58
Consensus pattern (9 bp):
TATAATTTG
Found at i:26215916 original size:19 final size:19
Alignment explanation
Indices: 26215892--26215930 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26215882 AAGTTAGTAG
26215892 TTTCAGAATACCATTTCCA
1 TTTCAGAATACCATTTCCA
*
26215911 TTTCAGAATGCCATTTCCA
1 TTTCAGAATACCATTTCCA
26215930 T
1 T
26215931 AAACCATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (19 bp):
TTTCAGAATACCATTTCCA
Found at i:26221261 original size:12 final size:12
Alignment explanation
Indices: 26221246--26221270 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26221236 TCATCATCTT
26221246 CTTCTTCCTCTC
1 CTTCTTCCTCTC
26221258 CTTCTTCCTCTC
1 CTTCTTCCTCTC
26221270 C
1 C
26221271 CCATGCTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTTCTTCCTCTC
Found at i:26226325 original size:23 final size:23
Alignment explanation
Indices: 26226278--26226321 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
26226268 CTTGTCGAAA
26226278 AATTATCAAAATTAATCAAAATC
1 AATTATCAAAATTAATCAAAATC
*
26226301 AATTAT-AAAATTAATTAAAAT
1 AATTATCAAAATTAATCAAAAT
26226322 TCAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (23 bp):
AATTATCAAAATTAATCAAAATC
Found at i:26228619 original size:15 final size:15
Alignment explanation
Indices: 26228587--26228615 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26228577 AATTTTTGTG
26228587 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
26228602 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
26228616 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:26229988 original size:6 final size:6
Alignment explanation
Indices: 26229958--26230138 Score: 95
Period size: 6 Copynumber: 29.3 Consensus size: 6
26229948 AAGAAACATT
* * *
26229958 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * * *
26230007 ATCAAA ATCAAA ATTAGA ATCATA ATTAGGTA A-CAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* * *
26230056 ATCAGGTA A-CAGA ATTAGA ATCAGA ATCAGA ATTAGGCA A-CAGA ATTAGA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* *
26230106 ATCAGT ATCCGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA AT-CAG-A ATCAGA ATCAGA ATCAGA AT
26230139 GTGAATGCAA
Statistics
Matches: 132, Mismatches: 26, Indels: 34
0.69 0.14 0.18
Matches are distributed among these distances:
5 10 0.08
6 103 0.78
7 12 0.09
8 7 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:26230013 original size:37 final size:37
Alignment explanation
Indices: 26229967--26230053 Score: 111
Period size: 37 Copynumber: 2.4 Consensus size: 37
26229957 TATCAGAACT
* * *
26229967 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
* * *
26230004 AGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
*
26230041 AGAATCAGAATCA
1 AGAATCAAAATCA
26230054 GTATCAGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:26230062 original size:25 final size:25
Alignment explanation
Indices: 26230034--26230135 Score: 105
Period size: 25 Copynumber: 3.8 Consensus size: 25
26230024 AATCATAATT
26230034 AGGTAACAGAATCAGAATCAGTATC
1 AGGTAACAGAATCAGAATCAGTATC
* *
26230059 AGGTAACAGAATTAGAATCAGAATCAGAATT
1 AGGTAAC------AGAATCAGAATCAGTATC
* *
26230090 AGGCAACAGAATTAGAATCAGTATC
1 AGGTAACAGAATCAGAATCAGTATC
*
26230115 CGGTAACAGAATCAGAATCAG
1 AGGTAACAGAATCAGAATCAG
26230136 AATGTGAATG
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
25 40 0.65
31 22 0.35
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.20
Consensus pattern (25 bp):
AGGTAACAGAATCAGAATCAGTATC
Found at i:26230111 original size:56 final size:56
Alignment explanation
Indices: 26229979--26230138 Score: 194
Period size: 56 Copynumber: 2.8 Consensus size: 56
26229969 AATCAAAATG
* * * * *
26229979 AGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATTAGAATCATAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATC------AGAATCAGAATTAGGCAAC
*
26230041 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAATCAGAATTAGGCAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
* *
26230097 AGAATTAGAATCAGTATCCGGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
26230139 GTGAATGCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
56 56 0.63
62 33 0.37
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (56 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAATCAGAATTAGGCAAC
Found at i:26230131 original size:31 final size:31
Alignment explanation
Indices: 26229979--26230138 Score: 122
Period size: 31 Copynumber: 5.4 Consensus size: 31
26229969 AATCAAAATG
* *
26229979 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* * * * *
26230010 AAAATCAAAATTAGAATCA--TAATTAGGTAA-C
1 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATC
*
26230041 AGAATCAGAATCAGTATCAGGTAACAGAATT
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
26230072 AGAATCAGAATCAGAATTAGG---C--AA-C
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
* *
26230097 AGAATTAGAATCAGTATCCGGTAACAGAATC
1 AGAATCAGAATCAGTATCAGGTAACAGAATC
26230128 AGAATCAGAAT
1 AGAATCAGAAT
26230139 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 19, Indels: 24
0.70 0.13 0.17
Matches are distributed among these distances:
25 17 0.17
26 2 0.02
28 2 0.02
29 2 0.02
30 5 0.05
31 64 0.65
32 3 0.03
33 3 0.03
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATC
Found at i:26230761 original size:27 final size:27
Alignment explanation
Indices: 26230715--26230789 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
26230705 GGTATTTCAA
*
26230715 TAATTTTGTAAATCGAGGGTAAAACGG
1 TAATTTTATAAATCGAGGGTAAAACGG
* **
26230742 TAATTTTATAAATC-AGGGGTACATTGG
1 TAATTTTATAAATCGA-GGGTAAAACGG
* *
26230769 TAATTTTACAAGTCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
26230790 TTTCAATATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.03
27 38 0.95
28 1 0.03
ACGTcount: A:0.35, C:0.08, G:0.24, T:0.33
Consensus pattern (27 bp):
TAATTTTATAAATCGAGGGTAAAACGG
Found at i:26231977 original size:14 final size:15
Alignment explanation
Indices: 26231940--26231981 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
26231930 AAATACAAAC
26231940 TATATATGCTGAAATG
1 TATATATG-TGAAATG
*
26231956 TATA-ATGTGATA-G
1 TATATATGTGAAATG
26231969 TATATATGTGAAA
1 TATATATGTGAAA
26231982 GTCAAATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.22
14 11 0.48
15 3 0.13
16 4 0.17
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (15 bp):
TATATATGTGAAATG
Found at i:26232269 original size:43 final size:42
Alignment explanation
Indices: 26232116--26232270 Score: 127
Period size: 43 Copynumber: 3.7 Consensus size: 42
26232106 TGTGTTCTCG
* * * * *
26232116 TGTAAGACTATGTCAGGGACGTTGGTATCGATATGTGATTATG-
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGA-TA-GC
* * * * *
26232159 TGTAAGACCATGTCTGGGACATCGACATTG-TATTTGAT-TC
1 TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
* *
26232199 GTGTAAGACCCTGTCTGGGACAATGGCATCGATATATGATAGC
1 -TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
* *
26232242 ATGTAAGACCATGTTTGGGACGTTGGCAT
1 -TGTAAGACCATGTCTGGGACATTGGCAT
26232271 TGTACGATAT
Statistics
Matches: 87, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
41 26 0.30
42 13 0.15
43 48 0.55
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGATATATGATAGC
Found at i:26234756 original size:25 final size:25
Alignment explanation
Indices: 26234686--26234756 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
26234676 TTATTTTCTC
* *
26234686 AAAAATTTAATTAA-TAAAAATTATT
1 AAAAATTCAATAAATTAAAAATTA-T
*
26234711 AATAATTCAATAAATTGAAAAATTA-
1 AAAAATTCAATAAATT-AAAAATTAT
*
26234736 AAAAATTGAATAAAATTAAAA
1 AAAAATTCAAT-AAATTAAAA
26234757 TTTAGGAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 24 0.63
26 6 0.16
27 8 0.21
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (25 bp):
AAAAATTCAATAAATTAAAAATTAT
Found at i:26235518 original size:22 final size:19
Alignment explanation
Indices: 26235479--26235520 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
26235469 TGCAAAGTTG
26235479 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
26235498 ATAATAGATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
26235520 A
1 A
26235521 AAGATCATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:26236883 original size:26 final size:26
Alignment explanation
Indices: 26236854--26237046 Score: 113
Period size: 27 Copynumber: 7.3 Consensus size: 26
26236844 CTAGTTTACC
26236854 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCCAGTTGTA
* * *
26236880 AAATTAC-CAAAGTA-CCCCGGTTTATA
1 AAATTACTGAAA-TACCCCCAG-TTGTA
* * **
26236906 AAATTACCGAAATATCATC-GATTGTA
1 AAATTACTGAAATACCCCCAG-TTGTA
* * *
26236932 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
* ** ** *
26236959 AAATTACCGAAATATGCTTAGTTTGCA
1 AAATTACTGAAATACCCCCAG-TTGTA
* *
26236986 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
* * *
26237013 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
26237040 AAATTAC
1 AAATTAC
26237047 CAAAGTACCC
Statistics
Matches: 127, Mismatches: 32, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
25 8 0.06
26 41 0.32
27 77 0.61
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAGTTGTA
Found at i:26236964 original size:27 final size:27
Alignment explanation
Indices: 26236875--26237164 Score: 273
Period size: 27 Copynumber: 10.9 Consensus size: 27
26236865 ATACCCCCAG
* *
26236875 TTGTAAAATTACCAAAGTACCC-CGGT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * * *
26236901 TTATAAAATTACCGAAATATCATCGA-
1 TTGTAAAATTACCAAAATACCCTCGAT
*
26236927 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* ** *
26236954 TTGTAAAATTACCGAAATATGCT-TAGT
1 TTGTAAAATTACCAAAATACCCTCGA-T
* **
26236981 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
26237008 TTGTAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCGAT
* *
26237035 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * * * *
26237062 TTATAAAGTTACCCAAATATCCTTGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
26237089 TTGTAAAATTACCGAAATACCGTTGA-
1 TTGTAAAATTACCAAAATACCCTCGAT
*
26237115 TTGTAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCAAAATACCCTCGAT
* * *
26237142 TTATAAAATTATCGAAATACCCT
1 TTGTAAAATTACCAAAATACCCT
26237165 TGTAGGGTAG
Statistics
Matches: 211, Mismatches: 48, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
26 61 0.29
27 149 0.71
28 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCGAT
Found at i:26237080 original size:81 final size:79
Alignment explanation
Indices: 26236854--26237164 Score: 331
Period size: 81 Copynumber: 3.9 Consensus size: 79
26236844 CTAGTTTACC
* * *
26236854 AAATTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCCCGGTTTATAAAATTACCGAAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCGAAA
* *
26236918 TATCATCGA-TTGTA
65 TACCCTCGATTTGTA
** ** ** *
26236932 AAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TATGCTTAGTTTGCAAAATTACTGA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACC-AAAGTACCCCGA-TTTATAAAATTACCGA
26236996 AATACCCTCGATTTGTA
63 AATACCCTCGATTTGTA
* *
26237013 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAGTTACCCAA
1 AAATTACTAAAATACCCTCGA-TTGTAAAATTACCAAAGTA-CCCCGATTTATAAAATTACCGAA
* *
26237078 ATATCCTTGATTTGTA
64 ATACCCTCGATTTGTA
** * * * * *
26237094 AAATTACCGAAATACCGTTGATTGTAAAATTACTAAAATACCCTCGATTTATAAAATTATCGAAA
1 AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCC-CGATTTATAAAATTACCGAAA
26237159 TACCCT
65 TACCCT
26237165 TGTAGGGTAG
Statistics
Matches: 191, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
78 16 0.08
79 21 0.11
80 68 0.36
81 84 0.44
82 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (79 bp):
AAATTACTAAAATACCCTCGATTGTAAAATTACCAAAGTACCCCGATTTATAAAATTACCGAAAT
ACCCTCGATTTGTA
Found at i:26237178 original size:27 final size:27
Alignment explanation
Indices: 26237148--26237772 Score: 683
Period size: 27 Copynumber: 23.2 Consensus size: 27
26237138 CGATTTATAA
26237148 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
26237175 AATTA-CTAAAATACCATTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* **
26237202 AATTACCGAAATACCCTTGTAATGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
26237229 AATTA-CTGAAATACCCCTGTAAGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
26237256 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237283 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
26237310 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237337 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237364 AATTATCGAAATACCCTTGTATGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
26237391 AATTATTGAAATA-CCATGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237417 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237444 AATTA-CTGAAATA-CCTCTATAGGGTAG
1 AATTATC-GAAATACCCT-TGTAGGGTAG
* *
26237471 AATTATCGAAATACCCTTGTTGCGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
26237498 AAATA-CGAAAATACCTTTGTAGGGTAG
1 AATTATCG-AAATACCCTTGTAGGGTAG
* * *
26237525 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * **
26237552 AATTATTGAAATGCCCCTGTAGAATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
26237579 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
26237606 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
26237633 AATTATTGAAATACCCCTGTAGGATAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
26237660 AATTA-CTGAAATACCCGTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* *
26237687 AAATATCGAAATACCCGTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
26237714 AAATATCGAAATACCCCTGTGGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * * *
26237741 AATTA-CTGAGATACCCTTATGGGGTAA
1 AATTATC-GAAATACCCTTGTAGGGTAG
26237768 AATTA
1 AATTA
26237773 CCGTTTTGCC
Statistics
Matches: 521, Mismatches: 61, Indels: 32
0.85 0.10 0.05
Matches are distributed among these distances:
26 32 0.06
27 479 0.92
28 10 0.02
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:26237206 original size:54 final size:54
Alignment explanation
Indices: 26237148--26237773 Score: 774
Period size: 54 Copynumber: 11.6 Consensus size: 54
26237138 CGATTTATAA
* * **
26237148 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
** *
26237202 AATTACCGAAATACCCTTGTAATGTAGAATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
*
26237256 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
26237310 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * *
26237364 AATTATCGAAATACCCTTGTATGGTAGAATTATTGAAATA-CCATGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* *
26237417 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * **
26237471 AATTATCGAAATACCCTTGTTGCGTAGAAATAC-GAAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTG-AAATACCCCTGTAGGGTAG
* * * * **
26237525 AAATACCGAAATACCCCTGTAGGGTAGAATTATTGAAATGCCCCTGTAGAATAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * *
26237579 AAATACCAAAATACCCTTGTAGGGTAGAAATA-TCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
** * * *
26237633 AATTATTGAAATACCCCTGTAGGATAGAATTACTGAAATACCCGTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
* * * * *
26237687 AAATATCGAAATACCCGTGTAGGGTAGAAATA-TCGAAATACCCCTGTGGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
26237741 AATTACTGAGATACCCTTATGGGGTAAAATTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTAC
26237774 CGTTTTGCCC
Statistics
Matches: 490, Mismatches: 75, Indels: 13
0.85 0.13 0.02
Matches are distributed among these distances:
53 52 0.11
54 436 0.89
55 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
Found at i:26237240 original size:81 final size:81
Alignment explanation
Indices: 26237148--26237775 Score: 774
Period size: 81 Copynumber: 7.8 Consensus size: 81
26237138 CGATTTATAA
* * ** *
26237148 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCATTGTAGGGTAGAATTACCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* **
26237213 TACCCTTGTAATGTAG
66 TACCCCTGTAGGGTAG
* * * *
26237229 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
26237294 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*** * *
26237310 AATTACCAAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
26237375 TACCCTTGTATGGTAG
66 TACCCCTGTAGGGTAG
* *
26237391 AATTATTGAAATA-CCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
* *
26237455 TACCTCTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * *
26237471 AATTATCGAAATACCCTTGTTGCGTAGAAATA-CGAAAATACCTTTGTAGGGTAGAAATACCGAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCG-AAATACCCTTGTAGGGTAGAATTACCGAA
26237535 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* ** * * * *
26237552 AATTATTGAAATGCCCCTGTAGAATAGAAATACCAAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
26237617 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
26237633 AATTATTGAAATACCCCTGTAGGATAGAATTACTGAAATACCCGTGTAGGGTAGAAATATCGAAA
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
*
26237698 TACCCGTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * * *
26237714 AAATATCGAAATACCCCTGTGGGGTAGAATTACTGAGATACCCTTATGGGGTAAAATTACCG
1 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCG
26237776 TTTTGCCCCA
Statistics
Matches: 476, Mismatches: 68, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
80 74 0.16
81 401 0.84
82 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (81 bp):
AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:26238090 original size:20 final size:20
Alignment explanation
Indices: 26238065--26238105 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26238055 TGTGTGCATT
26238065 TATTGTGGACTTCGTATCGA
1 TATTGTGGACTTCGTATCGA
* *
26238085 TATTGTGGGCTTCGTGTCGA
1 TATTGTGGACTTCGTATCGA
26238105 T
1 T
26238106 TATAGACCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTGGACTTCGTATCGA
Found at i:26238439 original size:27 final size:26
Alignment explanation
Indices: 26238338--26238441 Score: 127
Period size: 27 Copynumber: 3.9 Consensus size: 26
26238328 ATTCTGTTAA
* * *
26238338 GTGGCTTTGCCACATTATCTAATTCTG
1 GTGGCTCTGCCACAATATCT-GTTCTG
*
26238365 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
26238392 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
26238419 GTGACTCTGTCACAATATCTGTT
1 GTGGCTCTGCCACAATATCTGTT
26238442 TTGGCAGCCA
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 10 0.14
27 53 0.77
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:26238601 original size:6 final size:6
Alignment explanation
Indices: 26238592--26238693 Score: 84
Period size: 6 Copynumber: 16.7 Consensus size: 6
26238582 TACCTGATAT
* * *
26238592 TGATTC TGATTC TGATTT TGATTC CGGTTC TG-TTACC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC
* * *
26238641 TGATTC TG-TCATC TGATTC TGATTC TAATTC TCATTT TGATTC T-AGTTC
1 TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC
26238690 TGAT
1 TGAT
26238694 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
5 4 0.05
6 63 0.81
7 8 0.10
8 3 0.04
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:26238663 original size:31 final size:30
Alignment explanation
Indices: 26238596--26238672 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 30
26238586 TGATATTGAT
*
26238596 TCTGATTCTGATTTTGATTCCGGTTCTG-T
1 TCTGATTCTGATTCTGATTCCGGTTCTGAT
*
26238625 TACCTGATTCTGATTCTGATT-CTGTCATCTGAT
1 T--CTGATTCTGATTCTGATTCCGGT--TCTGAT
*
26238658 TCTGATTCTAATTCT
1 TCTGATTCTGATTCT
26238673 CATTTTGATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 1 0.03
30 3 0.08
31 30 0.75
32 4 0.10
33 2 0.05
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.49
Consensus pattern (30 bp):
TCTGATTCTGATTCTGATTCCGGTTCTGAT
Found at i:26238666 original size:25 final size:25
Alignment explanation
Indices: 26238602--26238672 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
26238592 TGATTCTGAT
* * * *
26238602 TCTGATTTTGATTCCGGTTCTGTTA
1 TCTGATTCTGATTCTGATTCTGTCA
*
26238627 CCTGATTCTGATTCTGATTCTGTCA
1 TCTGATTCTGATTCTGATTCTGTCA
*
26238652 TCTGATTCTGATTCTAATTCT
1 TCTGATTCTGATTCTGATTCT
26238673 CATTTTGATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.49
Consensus pattern (25 bp):
TCTGATTCTGATTCTGATTCTGTCA
Found at i:26288409 original size:29 final size:29
Alignment explanation
Indices: 26288352--26288466 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
26288342 TACCTATATC
* * * *
26288352 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCTTTAGGCCCAAATCACATTTATA
* *
26288380 TGGCCCTTTAGACCCAAATCACATGTATA
1 TGGCCCTTTAGGCCCAAATCACATTTATA
*
26288409 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCTTTAGGCCCAAATCACATTTATA
*
26288438 TGGCCCTTTAGGCCC-AGTCACATTTATA
1 TGGCCCTTTAGGCCCAAATCACATTTATA
26288466 T
1 T
26288467 TCATGTTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 25 0.33
29 50 0.67
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
TGGCCCTTTAGGCCCAAATCACATTTATA
Found at i:26288413 original size:57 final size:57
Alignment explanation
Indices: 26288352--26288466 Score: 160
Period size: 57 Copynumber: 2.0 Consensus size: 57
26288342 TACCTATATC
*
26288352 TGGCCCATTAAGCCC-AATCATATTCATATGGCCCTTTAGACCCAAATCACATGTATA
1 TGGCCCATTAAGCCCAAATCACATTCATATGGCCCTTTAGACCC-AATCACATGTATA
* * * * *
26288409 TGGCCCATTAGGCCCAAATCACATTTATATGGCCCTTTAGGCCCAGTCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATATGGCCCTTTAGACCCAATCACATGTATA
26288466 T
1 T
26288467 TCATGTTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 26 0.51
58 25 0.49
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (57 bp):
TGGCCCATTAAGCCCAAATCACATTCATATGGCCCTTTAGACCCAATCACATGTATA
Found at i:26290585 original size:30 final size:31
Alignment explanation
Indices: 26290526--26290585 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
26290516 TACGAGCCTT
* *
26290526 GGGGCAAAAGTGTCAAATATGTGAAAGTTTA
1 GGGGCAAAAATGTCAAATATGTCAAAGTTTA
* *
26290557 GGGGCAAAAATGT-AATTTTGTCAAAGTTT
1 GGGGCAAAAATGTCAAATATGTCAAAGTTT
26290586 GGGTCAAGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (31 bp):
GGGGCAAAAATGTCAAATATGTCAAAGTTTA
Found at i:26290993 original size:46 final size:47
Alignment explanation
Indices: 26290921--26291043 Score: 142
Period size: 46 Copynumber: 2.6 Consensus size: 47
26290911 GACAGGACAG
* *
26290921 GACAGAAATGAGCCATGTAAGTCCATATCAGT-TATAT-GGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCA-TATATATAGGCATTGGA
* *
26290967 GACAGGAATGAGCCATGTAAGCCCATATTATATATATACGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCATATATATA-GGCATTGGA
* * **
26291015 GATAGGAATAATTCATGTAAGTCCATATC
1 GACAGGAATGAGCCATGTAAGTCCATATC
26291044 GAAGACATGG
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 1 0.02
46 32 0.50
48 31 0.48
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (47 bp):
GACAGGAATGAGCCATGTAAGTCCATATCATATATATAGGCATTGGA
Done.