Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 83 of 320
Found at i:26299214 original size:58 final size:57
Alignment explanation
Indices: 26299141--26299251 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 57
26299131 TGAATGTGAC
*
26299141 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGGGCCAT-ATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCCTAATGGGCC-TGATACAGGTGATT
* * *
26299199 TGGGTCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCTGATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCTGATACAGGT
26299252 ATGTGAAATT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
56 1 0.02
57 23 0.48
58 24 0.50
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCCTAATGGGCCTGATACAGGTGATT
Found at i:26299238 original size:28 final size:29
Alignment explanation
Indices: 26299128--26299241 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
26299118 TTGAACATGA
*
26299128 ATATGAATGTGA-CTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
26299156 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
26299185 ATAT-ACAGGTGATTTGGGTCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
26299214 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
26299242 TGATACAGGT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:26304574 original size:49 final size:49
Alignment explanation
Indices: 26304516--26304631 Score: 130
Period size: 49 Copynumber: 2.4 Consensus size: 49
26304506 GCATGTTCTA
* *
26304516 GACAGGTCTTACACTGACTTTTATATATCGATG-CTAATGCCATGTCC-C
1 GACAGGTCTTACACTGACTCTCATATATCGATGTC-AATGCCATGTCCAC
* * * *
26304564 AGATAGGTCTTACACT-AGCTCTCATCTATCGGTGTCGATGCCATGTCCAC
1 -GACAGGTCTTACACTGA-CTCTCATATATCGATGTCAATGCCATGTCCAC
26304614 GACAGGTCTTACACTGAC
1 GACAGGTCTTACACTGAC
26304632 ATAGAACAAG
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
48 1 0.02
49 52 0.93
50 3 0.05
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (49 bp):
GACAGGTCTTACACTGACTCTCATATATCGATGTCAATGCCATGTCCAC
Found at i:26312562 original size:111 final size:111
Alignment explanation
Indices: 26312441--26312663 Score: 419
Period size: 111 Copynumber: 2.0 Consensus size: 111
26312431 ATATATGTGG
26312441 AATACATGGAAACTATGGTATATGAAATATTAATATAATGAAATAAATGATATGTGTTTATAAGA
1 AATACATGGAAACTATGGTATATGAAATATTAATATAATGAAATAAATGATATGTGTTTATAAGA
*
26312506 AAACAAAAAGAGAATGTTATGTATTAGGACATGTATATATATATAT
66 AAACAAAAAGAGAATGTTATGTATCAGGACATGTATATATATATAT
*
26312552 AATACATGGAAACTATGGTATATGAAATATTGATATAATGAAATAAATGATATGTGTTTATAAGA
1 AATACATGGAAACTATGGTATATGAAATATTAATATAATGAAATAAATGATATGTGTTTATAAGA
*
26312617 AAACAAAAAGAGAATGTTATGTATCATGACATGTATATATATATAT
66 AAACAAAAAGAGAATGTTATGTATCAGGACATGTATATATATATAT
26312663 A
1 A
26312664 TATGACTAGT
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 109 1.00
ACGTcount: A:0.48, C:0.04, G:0.15, T:0.33
Consensus pattern (111 bp):
AATACATGGAAACTATGGTATATGAAATATTAATATAATGAAATAAATGATATGTGTTTATAAGA
AAACAAAAAGAGAATGTTATGTATCAGGACATGTATATATATATAT
Found at i:26315875 original size:68 final size:67
Alignment explanation
Indices: 26315803--26315952 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
26315793 CATCATGTGT
* * * *
26315803 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
26315865 ATGTAG
62 ATGTAG
** * *
26315871 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
26315936 AG
66 AG
26315938 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
26315953 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:26315908 original size:64 final size:64
Alignment explanation
Indices: 26315827--26316010 Score: 192
Period size: 67 Copynumber: 2.8 Consensus size: 64
26315817 AGACATTATG
* *
26315827 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
26315891 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26315956 AA
63 AA
* * * * **
26315958 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTCTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGC
26316011 CGAACTATAT
Statistics
Matches: 97, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26318798 original size:27 final size:26
Alignment explanation
Indices: 26318754--26318805 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
26318744 GTCGCTGCAA
26318754 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGGCCTCGCCACA-ATATCTGT
* *
26318781 TCTGGTGGCTTCGTCACAATATCTG
1 TCTGGTGGCCTCGCCACAATATCTG
26318806 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.15, C:0.27, G:0.23, T:0.35
Consensus pattern (26 bp):
TCTGGTGGCCTCGCCACAATATCTGT
Found at i:26318882 original size:27 final size:26
Alignment explanation
Indices: 26318844--26318903 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
26318834 CCACATATAT
* *
26318844 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
26318870 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
26318897 ATATCTG
1 ATATCTG
26318904 ATAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:26320667 original size:10 final size:11
Alignment explanation
Indices: 26320637--26320666 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
26320627 TTTCTTACCG
26320637 AATACAAAAGAA
1 AATA-AAAAGAA
26320649 AATAAAAAGAA
1 AATAAAAAGAA
26320660 AATAAAA
1 AATAAAA
26320667 GGGTTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.80, C:0.03, G:0.07, T:0.10
Consensus pattern (11 bp):
AATAAAAAGAA
Found at i:26325015 original size:49 final size:49
Alignment explanation
Indices: 26324955--26325174 Score: 188
Period size: 49 Copynumber: 4.6 Consensus size: 49
26324945 ACATCAAAGT
26324955 TGATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATCGAGGC
1 TGATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATCGAGGC
* * * * * *
26325004 TGATGACATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCG-GTG-
1 TGATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATCGAG-GC
* * * * * *
26325052 TCGATGCCGTGTCCCAGACAGGTCTTACACTAAC----ACACAAC-AAGC
1 T-GATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATCGAGGC
* * *
26325097 TGACGCCATGTCCCAGACAGGTCTTACACT-AGCTTGTATATCTCGAGGC
1 TGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTTATATATCGAGGC
* * *
26325146 CGATG-CATGTCCCAAACATGTCTTACACT
1 TGATGCCATGTCCCAGACAGGTCTTACACT
26325175 AGCTCCCATC
Statistics
Matches: 134, Mismatches: 27, Indels: 21
0.74 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 29 0.22
45 4 0.03
48 27 0.20
49 73 0.54
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
TGATGCCATGTCCCAGACAGGTCTTACACTGACTTTTATATATCGAGGC
Found at i:26325203 original size:46 final size:44
Alignment explanation
Indices: 26325146--26325269 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 44
26325136 ATCTCGAGGC
* *
26325146 CGATGCATGTCCCAAACATGTCTTACACTAGCTCCCATCTCAATGT-
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT--C-TCACAATGTA
* * * *
26325192 CGATGCATGTCCTAGACATGTCTTGCACTGGCTCTCAGAATGTGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAATGT-A
26325237 CCGATGCATGTCCCAGACATGTCTTACACTAGC
1 -CGATGCATGTCCCAGACATGTCTTACACTAGC
26325270 ACACATATCA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
43 7 0.11
44 1 0.02
46 58 0.88
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAATGTA
Found at i:26328648 original size:80 final size:80
Alignment explanation
Indices: 26328515--26328722 Score: 287
Period size: 80 Copynumber: 2.6 Consensus size: 80
26328505 TATTCGGATG
* * * * *
26328515 ATAACCGGGCTAAGTCCCGAAGGCATTTGT-TCTAGTGACTA-ATTTCGGGCTAAGCCCCAAAGG
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGT-GAGTTACTATA-TCCGGGCTAAGCCCCAAAGG
*
26328578 CATTTGTGCGAGTCACT
64 CATTTGTGCGAGTCACC
26328595 ATAACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTACTATATCCGGGCTAAGCCCCAAAGGCA
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTACTATATCCGGGCTAAGCCCCAAAGGCA
*
26328660 TTTGTGCGAGTTACC
66 TTTGTGCGAGTCACC
* *
26328675 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCGG
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTA-CTATATCCGG
26328723 TTAAATTCCG
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
79 2 0.02
80 112 0.97
81 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTACTATATCCGGGCTAAGCCCCAAAGGCA
TTTGTGCGAGTCACC
Found at i:26328709 original size:40 final size:40
Alignment explanation
Indices: 26328515--26328710 Score: 187
Period size: 40 Copynumber: 4.9 Consensus size: 40
26328505 TATTCGGATG
* * * * * *
26328515 ATAACCGGGCTAAGTCCCGAAGGCATTTGTTCTAGTGACT
1 ATAACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGTTACT
** * *
26328555 A-ATTTCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTCACT
1 ATA-ACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGTTACT
* * * *
26328595 ATAACCGGGCTATGTCCCGAAGGCATTCGTGTGAGTTACT
1 ATAACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGTTACT
* * *
26328635 ATATCCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACC
1 ATAACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGTTACT
* * * *
26328675 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
1 ATAACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGT
26328711 AGCTATATCC
Statistics
Matches: 126, Mismatches: 28, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 124 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGCCCCAAAGGCATTCGTGCGAGTTACT
Found at i:26336737 original size:38 final size:38
Alignment explanation
Indices: 26336619--26336753 Score: 134
Period size: 38 Copynumber: 3.6 Consensus size: 38
26336609 ACTTGTGAGT
* *
26336619 TATATCCGAGC-AAAACCCGAAGGCATTTGTGCGAGAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGAC
* * * *
26336656 TATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGAC
* * **
26336694 CATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-AC
26336732 TATATCC-GGCTAA-ATCCCGAAG
1 TATATCCGGGCTAAGA-CCCGAAG
26336754 TACTTGGTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
36 1 0.01
37 30 0.38
38 49 0.61
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.22
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGAC
Found at i:26339111 original size:46 final size:46
Alignment explanation
Indices: 26339061--26339236 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
26339051 TGGTTGAGCA
26339061 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26339107 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
26339152 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26339200 -CCCAAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26339237 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.06
46 58 0.53
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26339217 original size:93 final size:93
Alignment explanation
Indices: 26339058--26339229 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
26339048 GGATGGTTGA
* * *
26339058 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAGT
26339123 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26339151 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCCAAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCATTGAG
*
26339215 TTGAGTCTGAGTTCG
65 TTGAGTCCGAGTTCG
26339230 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26353804 original size:49 final size:49
Alignment explanation
Indices: 26353627--26353792 Score: 199
Period size: 49 Copynumber: 3.4 Consensus size: 49
26353617 GTCACGTGTC
* * *
26353627 TAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTG
* * ** * *
26353676 TAGTACTAAGTGCAAGCTACTACGTGTATC-AGATGGTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGA-ATAATT-GGTCGCATGTG
*
26353726 TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTTGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTG
* *
26353775 TACTATTAAGTGCAGGCT
1 TAGTACTAAGTGCAGGCT
26353793 CCTATGCGTA
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
49 54 0.56
50 41 0.43
51 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTG
Found at i:26353808 original size:99 final size:99
Alignment explanation
Indices: 26353615--26353808 Score: 280
Period size: 99 Copynumber: 2.0 Consensus size: 99
26353605 ATCTATTGTG
* * * *
26353615 AGGTCACGTGTCTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTACT
* *
26353680 ACTAAGTGCAAGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAAGCTACTACGCGTACCAGATGGTT
* *
26353714 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTTGCATGTGTACT
1 AGGTCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTACT
* * * *
26353779 ATTAAGTGCAGGCTCCTATGCGTACCAGAT
66 ACTAAGTGCAAGCTACTACGCGTACCAGAT
26353809 AGCTTTGGCT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
AGGTCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTACCGAATAATTGGTCGCATGTGTACT
ACTAAGTGCAAGCTACTACGCGTACCAGATGGTT
Found at i:26357164 original size:28 final size:27
Alignment explanation
Indices: 26357124--26357187 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 27
26357114 ATGTACTAGA
*
26357124 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACC-TT
26357152 ATACCCCTATGTATGCAAAATGACCTT
1 ATACCCCTATGTATGCAAAATGACCTT
26357179 ATACCCCTA
1 ATACCCCTA
26357188 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 11 0.31
28 24 0.69
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.30
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACCTT
Found at i:26357347 original size:27 final size:27
Alignment explanation
Indices: 26357304--26357380 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 27
26357294 GGTGGCTATG
26357304 CCACAAATTATCTGTTCTGGTGGCCCTA
1 CCACAAATTATCTGTTCTGGTGG-CCTA
*
26357332 CCAC-AATTATCTGTTCTGGTGGCCTG
1 CCACAAATTATCTGTTCTGGTGGCCTA
*
26357358 CCACAAAATATCTGTATCTGGTG
1 CCACAAATTATCTGT-TCTGGTG
26357381 ACTCTGTCAC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.16
27 27 0.60
28 11 0.24
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (27 bp):
CCACAAATTATCTGTTCTGGTGGCCTA
Found at i:26357399 original size:54 final size:56
Alignment explanation
Indices: 26357292--26357405 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 56
26357282 AGGAAGCGTC
* *
26357292 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTACCACAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACAATTATCTGTAT
* * ** *
26357347 CTGGTGGC-CTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTATGCCACAAAATATCTGT-TCTGGTGACCCTACCACAATTATCTGTAT
26357402 CTGG
1 CTGG
26357406 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 24 0.48
55 26 0.52
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTACCACAATTATCTGTAT
Found at i:26365024 original size:28 final size:28
Alignment explanation
Indices: 26364984--26365048 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
26364974 ATGTACTAGA
*
26364984 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
26365012 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
26365040 ATACCCCTA
1 ATACCCCTA
26365049 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:26365199 original size:28 final size:29
Alignment explanation
Indices: 26365154--26365216 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
26365144 AGGAAGCGTC
*
26365154 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCCATGCCACAAATTATCTGTAT
* *
26365182 CTGGTGGCCCTGCTACAAATTATCTGTAT
1 CTGGTGGCCATGCCACAAATTATCTGTAT
26365211 CTGGTG
1 CTGGTG
26365217 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 24 0.77
29 7 0.23
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (29 bp):
CTGGTGGCCATGCCACAAATTATCTGTAT
Found at i:26388619 original size:14 final size:13
Alignment explanation
Indices: 26388596--26388627 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
26388586 GGGAAATCAA
26388596 AACAATAATTAAG
1 AACAATAATTAAG
26388609 AACACATAATTAAG
1 AACA-ATAATTAAG
26388623 AACAA
1 AACAA
26388628 GTTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:26401977 original size:24 final size:24
Alignment explanation
Indices: 26401942--26401994 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
26401932 ATGACTCGGC
*
26401942 AAAAGTCAAAAAGCC-AAAATGCTG
1 AAAAGTCAAAAA-CCTAAAATGCCG
*
26401966 AAAAGTCGAAAACCTAAAATGCCG
1 AAAAGTCAAAAACCTAAAATGCCG
26401990 AAAAG
1 AAAAG
26401995 CTAAAAGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.11
Consensus pattern (24 bp):
AAAAGTCAAAAACCTAAAATGCCG
Found at i:26402122 original size:10 final size:9
Alignment explanation
Indices: 26402103--26402142 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
26402093 GTTGAGAATT
26402103 GGCCAAATG
1 GGCCAAATG
26402112 GGCCGAAATG
1 GGCC-AAATG
*
26402122 GGCTAAATG
1 GGCCAAATG
*
26402131 GGCCTAATG
1 GGCCAAATG
26402140 GGC
1 GGC
26402143 TATTGGGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
9 19 0.70
10 8 0.30
ACGTcount: A:0.28, C:0.20, G:0.38, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:26402256 original size:29 final size:28
Alignment explanation
Indices: 26402224--26402330 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
26402214 ATAATATGAT
*
26402224 TTGGGCCTAATTGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* *
26402253 TTGGGCCTAGTGGGCCATAAGAATAGGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* * * *
26402282 CTGGGCCAAATGGGTCATTTGAATA-AGA
1 TTGGGCCTAATGGGCCATATGAATAGA-A
*
26402310 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
26402331 TATGGATGTA
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
27 1 0.02
28 18 0.29
29 43 0.69
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:26406483 original size:18 final size:19
Alignment explanation
Indices: 26406450--26406485 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26406440 AATTGGCCAA
26406450 ATGGGCCGGAATGGGCTAG
1 ATGGGCCGGAATGGGCTAG
26406469 ATGGGCCGG-ATGGGCTA
1 ATGGGCCGGAATGGGCTA
26406486 TTGGGCCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.19, C:0.17, G:0.47, T:0.17
Consensus pattern (19 bp):
ATGGGCCGGAATGGGCTAG
Found at i:26406597 original size:29 final size:28
Alignment explanation
Indices: 26406565--26406671 Score: 110
Period size: 29 Copynumber: 3.8 Consensus size: 28
26406555 ATAATATGAT
*
26406565 TTGGGCCTAATTGGCCATATGAATGAGAA
1 TTGGGCCTAATGGGCCATATGAAT-AGAA
* *
26406594 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATA-GAA
* *
26406623 TTGGG-CTAGATGGGTCATTTGAATA-AGA
1 TTGGGCCTA-ATGGGCCATATGAATAGA-A
*
26406651 TTGGGCCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATG
26406672 CATGGATGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
27 1 0.02
28 19 0.30
29 44 0.69
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATAGAA
Found at i:26406667 original size:57 final size:58
Alignment explanation
Indices: 26406557--26406669 Score: 158
Period size: 58 Copynumber: 2.0 Consensus size: 58
26406547 GCATGAATAT
* * *
26406557 AATATGATTTGGGCCTAATTGGCCATATGAATGAGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATATGAATAAGAATTGGGCCTAGTGGGCCATAAG
* *
26406615 AATATGAATTGGG-CTAGATGGGTCATTTGAATAAG-ATTGGGCCTAGTGGGCCATA
1 AATATGAATTGGGCCTA-ATGGGCCATATGAATAAGAATTGGGCCTAGTGGGCCATA
26406670 TGCATGGATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 23 0.47
58 26 0.53
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.28
Consensus pattern (58 bp):
AATATGAATTGGGCCTAATGGGCCATATGAATAAGAATTGGGCCTAGTGGGCCATAAG
Found at i:26408977 original size:15 final size:15
Alignment explanation
Indices: 26408957--26408988 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26408947 GTCTTATAAC
26408957 AAGTTAAATAACAAT
1 AAGTTAAATAACAAT
*
26408972 AAGTTATATAACAAT
1 AAGTTAAATAACAAT
26408987 AA
1 AA
26408989 ACAGATACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGTTAAATAACAAT
Found at i:26409211 original size:45 final size:45
Alignment explanation
Indices: 26409147--26409235 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
26409137 CACTCCAATG
* *
26409147 TGGATGAAGCCATCAATATTCGTAGACAAGTTTCCATGTAGGTTA
1 TGGATGAAGCCATCAATATTCGTAGACAAGCTGCCATGTAGGTTA
26409192 TGGATGAAGCCA-CAAATATTCGTAGACAAGCTGCCATGTAGGTT
1 TGGATGAAGCCATC-AATATTCGTAGACAAGCTGCCATGTAGGTT
26409236 GTAGACAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (45 bp):
TGGATGAAGCCATCAATATTCGTAGACAAGCTGCCATGTAGGTTA
Found at i:26409239 original size:23 final size:23
Alignment explanation
Indices: 26409213--26409275 Score: 81
Period size: 24 Copynumber: 2.7 Consensus size: 23
26409203 ACAAATATTC
**
26409213 GTAGACAAGCTGCCATGTAGGTT
1 GTAGACAAGCCACCATGTAGGTT
26409236 GTAGACAAAGCCACCATGTAGGTT
1 GTAGAC-AAGCCACCATGTAGGTT
*
26409260 GTGGACAAAGCCACCA
1 GTAGAC-AAGCCACCA
26409276 ATTCTTCCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
23 6 0.17
24 30 0.83
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.19
Consensus pattern (23 bp):
GTAGACAAGCCACCATGTAGGTT
Found at i:26409246 original size:24 final size:24
Alignment explanation
Indices: 26409225--26409275 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
26409215 AGACAAGCTG
26409225 CCATGTAGGTTGTAGACAAAGCCA
1 CCATGTAGGTTGTAGACAAAGCCA
*
26409249 CCATGTAGGTTGTGGACAAAGCCA
1 CCATGTAGGTTGTAGACAAAGCCA
26409273 CCA
1 CCA
26409276 ATTCTTCCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (24 bp):
CCATGTAGGTTGTAGACAAAGCCA
Found at i:26409247 original size:45 final size:44
Alignment explanation
Indices: 26409153--26409249 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 44
26409143 AATGTGGATG
* * * **
26409153 AAGCCATCAATATTCGTAGACAAGTTTCCATGTAGGTTATGGATG
1 AAGCCA-CAATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
*
26409198 AAGCCACAAATATTCGTAGACAAGCTGCCATGTAGGTTGTAGACA
1 AAGCCAC-AATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
26409243 AAGCCAC
1 AAGCCAC
26409250 CATGTAGGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 44 0.98
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (44 bp):
AAGCCACAATATTCGTAGACAAGCTGCCATGTAGGTTATAGACA
Found at i:26413090 original size:27 final size:27
Alignment explanation
Indices: 26413050--26413199 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
26413040 ACACAGGGGT
* *
26413050 AAAACAGTCTTTTTACCCCATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
26413077 AAAAC-GCTCATTTTACCTCATAAGGGC
1 AAAACAG-TCATTTTACCTCATAAGGGC
*
26413104 AAAACAGTCATTTTA-CTCCATAAGGGT
1 AAAACAGTCATTTTACCT-CATAAGGGC
* *
26413131 AAAACAATCATTTTACCTCATAAGGGT
1 AAAACAGTCATTTTACCTCATAAGGGC
* *
26413158 AAAACAGTAATTTTACCTTATAAGGGC
1 AAAACAGTCATTTTACCTCATAAGGGC
26413185 AAAACAGTCATTTTA
1 AAAACAGTCATTTTA
26413200 TCAATTAAGG
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
26 3 0.03
27 104 0.95
28 3 0.03
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (27 bp):
AAAACAGTCATTTTACCTCATAAGGGC
Found at i:26413181 original size:81 final size:81
Alignment explanation
Indices: 26413046--26413199 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 81
26413036 CATCACACAG
* * *
26413046 GGGTAAAACAGTCTTTTTACCCCATAAGGGCAAAACGCTCATTTTACCTCATAAGGGCAAAACAG
1 GGGTAAAACAATCATTTTACCCCATAAGGGCAAAACGCTAATTTTACCTCATAAGGGCAAAACAG
26413111 TCATTTTACTCCATAA
66 TCATTTTACTCCATAA
* * *
26413127 GGGTAAAACAATCATTTTACCTCATAAGGGTAAAACAG-TAATTTTACCTTATAAGGGCAAAACA
1 GGGTAAAACAATCATTTTACCCCATAAGGGCAAAAC-GCTAATTTTACCTCATAAGGGCAAAACA
26413191 GTCATTTTA
65 GTCATTTTA
26413200 TCAATTAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (81 bp):
GGGTAAAACAATCATTTTACCCCATAAGGGCAAAACGCTAATTTTACCTCATAAGGGCAAAACAG
TCATTTTACTCCATAA
Found at i:26415107 original size:30 final size:30
Alignment explanation
Indices: 26415031--26415116 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
26415021 TTCAATTCAC
*
26415031 GAGCTAAACCTTAGCTCAACTTCAGCTTAA
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAA
* *
26415061 GAG-TATAATCTCAGCTCAACTTTAGCTTAA
1 GAGCTA-AACCTTAGCTCAACTTTAGCTTAA
* * *
26415091 GGGCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
26415117 CAAACCTGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 10 0.21
30 35 0.74
31 2 0.04
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAA
Found at i:26415314 original size:14 final size:14
Alignment explanation
Indices: 26415295--26415325 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26415285 TGTCTCATAA
*
26415295 TTTGATATTGTTTT
1 TTTGATATTATTTT
26415309 TTTGATATTATTTT
1 TTTGATATTATTTT
26415323 TTT
1 TTT
26415326 TTGTAGATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (14 bp):
TTTGATATTATTTT
Found at i:26416031 original size:22 final size:20
Alignment explanation
Indices: 26415999--26416047 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
26415989 ACTAAATTTA
26415999 TGAACTATTTTAATACATTAGTG
1 TGAAC-ATTTTAAT-CATT-GTG
* *
26416022 TGAACATTTTTATTATTGTG
1 TGAACATTTTAATCATTGTG
26416042 TGAACA
1 TGAACA
26416048 CCTAGATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 3 0.12
22 7 0.29
23 5 0.21
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (20 bp):
TGAACATTTTAATCATTGTG
Found at i:26417659 original size:9 final size:10
Alignment explanation
Indices: 26417652--26417708 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 10
26417642 AAGAGAAAAT
26417652 AAAGAAAAGA
1 AAAGAAAAGA
26417662 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
26417674 AAAGAAGA-A
1 AAAGAAAAGA
*
26417683 AAAGAAAACA
1 AAAGAAAAGA
*
26417693 AAATAAAAAGA
1 AAA-GAAAAGA
26417704 AAAGA
1 AAAGA
26417709 GAGGCAAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 8 0.21
10 9 0.24
11 16 0.42
12 5 0.13
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.02
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:26417676 original size:6 final size:5
Alignment explanation
Indices: 26417652--26417708 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
26417642 AAGAGAAAAT
* * *
26417652 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACA AAATAA
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAAGA AAA-GA
26417699 AAAGA AAAGA
1 AAAGA AAAGA
26417709 GAGGCAAGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
4 3 0.07
5 26 0.60
6 14 0.33
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:26417701 original size:25 final size:25
Alignment explanation
Indices: 26417656--26417704 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
26417646 GAAAATAAAG
*
26417656 AAAAGAAAAGAAAAAGCAAAAGAAGA
1 AAAAGAAAACAAAAA-CAAAAGAAGA
26417682 AAAAGAAAACAAAATA-AAAAGAA
1 AAAAGAAAACAAAA-ACAAAAGAA
26417705 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 7 0.33
26 13 0.62
27 1 0.05
ACGTcount: A:0.80, C:0.04, G:0.14, T:0.02
Consensus pattern (25 bp):
AAAAGAAAACAAAAACAAAAGAAGA
Found at i:26417863 original size:11 final size:12
Alignment explanation
Indices: 26417833--26417862 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26417823 AATTTGAGAG
*
26417833 TGAAAAAGAAGT
1 TGAAAAAGAAAT
26417845 TGAAAAAGAAAT
1 TGAAAAAGAAAT
26417857 TGAAAA
1 TGAAAA
26417863 GGAGATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (12 bp):
TGAAAAAGAAAT
Found at i:26442974 original size:28 final size:29
Alignment explanation
Indices: 26442933--26442988 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
26442923 CCGGGTTTTT
*
26442933 GGACATGGGCGTGT-CTAGGCCGTGTGAG
1 GGACACGGGCGTGTGCTAGGCCGTGTGAG
* *
26442961 GGACACGGGTGTGTGCTTGGCCGTGTGA
1 GGACACGGGCGTGTGCTAGGCCGTGTGA
26442989 AAACCTCTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.12, C:0.18, G:0.46, T:0.23
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGGCCGTGTGAG
Found at i:26445909 original size:47 final size:47
Alignment explanation
Indices: 26445840--26446321 Score: 739
Period size: 47 Copynumber: 10.1 Consensus size: 47
26445830 GAAATGATAG
*
26445840 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26445887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
26445936 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
26445983 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26446030 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
26446079 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
26446128 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26446175 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26446222 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
26446271 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26446318 TAAG
1 TAAG
26446322 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
47 232 0.57
49 178 0.43
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26446007 original size:96 final size:96
Alignment explanation
Indices: 26445840--26446321 Score: 751
Period size: 96 Copynumber: 5.0 Consensus size: 96
26445830 GAAATGATAG
* *
26445840 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
26445905 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * *
26445936 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCGAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
26446001 GTGATGAATGTGAAAGTG--TATATACGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
26446030 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
26446095 ATGTGATGAATGTGAAAGTGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGA
*
26446128 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
26446193 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * * * *
26446222 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
* *
26446287 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGA
26446318 TAAG
1 TAAG
26446322 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
94 92 0.26
96 219 0.61
97 1 0.00
98 47 0.13
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:26446106 original size:143 final size:144
Alignment explanation
Indices: 26445843--26446321 Score: 784
Period size: 143 Copynumber: 3.3 Consensus size: 144
26445833 ATGATAGTAA
* *
26445843 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
26445908 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
66 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGA
*
26445972 TATATACGTGATAG
131 TATATATGTGATAG
* *
26445986 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
26446051 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
*
26446116 ATATATATGTGATAA
130 ATATATATGTGATAG
*
26446131 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
26446196 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGT
66 ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
*
26446259 ATATATATGTGACAG
130 ATATATATGTGATAG
* * * * *
26446274 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26446322 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
143 226 0.72
145 89 0.28
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (144 bp):
GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGA
TATATATGTGATAG
Found at i:26446496 original size:37 final size:37
Alignment explanation
Indices: 26446440--26446518 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
26446430 CCGAGCTCTA
* ** * *
26446440 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
26446477 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
26446514 AAGAC
1 AAGAC
26446519 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:26448268 original size:29 final size:29
Alignment explanation
Indices: 26448233--26448306 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
26448223 GTTGTGAGAT
* *
26448233 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
26448262 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
26448291 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26448307 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:26448740 original size:40 final size:40
Alignment explanation
Indices: 26448696--26449172 Score: 819
Period size: 40 Copynumber: 11.9 Consensus size: 40
26448686 GAATTACTAA
26448696 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26448736 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
26448776 ATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
26448816 ATCCGGGCTAAGTCCCGAAAAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26448856 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26448896 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
** * * *
26448936 ATCCGGGCTAAGTTTCGAAGAGCGTTCGTGCTAGTAATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26448976 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26449016 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
26449056 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
26449096 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
26449136 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
26449173 CGTGTATTCG
Statistics
Matches: 412, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 412 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:26452680 original size:47 final size:47
Alignment explanation
Indices: 26452617--26453140 Score: 823
Period size: 47 Copynumber: 11.0 Consensus size: 47
26452607 ATGATAGTAA
*
26452617 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
26452664 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
26452711 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
26452760 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
26452807 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
26452854 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
26452903 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
26452952 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
26452999 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
26453046 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * * *
26453095 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26453141 AGTCCCGAAG
Statistics
Matches: 450, Mismatches: 21, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
47 272 0.60
49 178 0.40
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:26452788 original size:96 final size:94
Alignment explanation
Indices: 26452614--26453140 Score: 820
Period size: 96 Copynumber: 5.5 Consensus size: 94
26452604 GAAATGATAG
*
26452614 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
26452679 GTGATGAATGTGAAAGTGTATATATGAGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
26452708 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
*
26452773 ATGTGATGAATGTGAAAGTGTATATACGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
26452804 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
26452869 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
* *
26452900 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCG
26452965 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
26452996 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
*
26453061 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
26453092 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
26453141 AGTCCCGAAG
Statistics
Matches: 405, Mismatches: 20, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
94 128 0.32
96 232 0.57
98 45 0.11
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26452875 original size:143 final size:144
Alignment explanation
Indices: 26452617--26453142 Score: 862
Period size: 143 Copynumber: 3.7 Consensus size: 144
26452607 ATGATAGTAA
*
26452617 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATACGTGATAGGGCCTAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAGGGCCGAATGGCCGATGT
*
26452681 GATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26452746 TATATATGTGATAG
131 TATATATGTGATAG
26452760 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATACGTGATAGGGCCGAATGGCCGATGT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAGGGCCGAATGGCCGATGT
* *
26452824 GATGAATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
26452889 TATATATGTGATAG
131 TATATATGTGATAG
* * *
26452903 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATACGTGATAGGGCCGAATGGCCGATG
26452968 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-
65 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
26453032 -TATATATGTGATAA
130 ATATATATGTGATAG
* * * * * *
26453046 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATACGTGATAGGGCCGAATGGCCGATG
* *
26453111 TGATGGATGTGAAAGTGTATAAATGTGATAAG
65 TGATGAATGTGAAAGTGTATATATGTGATAAG
26453143 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
143 273 0.75
145 89 0.25
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (144 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAGGGCCGAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATATGTGATAG
Found at i:26460606 original size:23 final size:22
Alignment explanation
Indices: 26460548--26460608 Score: 61
Period size: 25 Copynumber: 2.7 Consensus size: 22
26460538 ATTATATTTT
* *
26460548 TATATTATTATA-AATTTAAAA
1 TATATTATTTTATATTTTAAAA
*
26460569 TATATAAATTCTTATATTTATAAAA
1 TATAT-TATT-TTATATTT-TAAAA
26460594 TATATTATTTTATAT
1 TATATTATTTTATAT
26460609 CAAGATTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 5 0.16
22 3 0.09
23 8 0.25
24 6 0.19
25 10 0.31
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATATTATTTTATATTTTAAAA
Found at i:26460644 original size:23 final size:25
Alignment explanation
Indices: 26460617--26460709 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 25
26460607 ATCAAGATTT
* *
26460617 TATAAAATAT-ATTTGT-CCAAATA
1 TATAAAATATAATTTATACAAAATA
26460640 TATAAAATATAATTTATACAAAATA
1 TATAAAATATAATTTATACAAAATA
* * *
26460665 TATAAAATCTAAAATGTATA-AAAATG
1 TATAAAA--TATAATTTATACAAAATA
*
26460691 TATAAAATTATATTTTATA
1 TATAAAA-TATAATTTATA
26460710 AAATATCAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
23 10 0.18
24 5 0.09
25 21 0.37
26 12 0.21
27 9 0.16
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (25 bp):
TATAAAATATAATTTATACAAAATA
Found at i:26460710 original size:25 final size:25
Alignment explanation
Indices: 26460635--26460712 Score: 95
Period size: 25 Copynumber: 3.1 Consensus size: 25
26460625 ATATTTGTCC
26460635 AAATATATAAAA-TATAATTTATACA
1 AAATATATAAAATTATAATTTATA-A
* *
26460660 AAATATATAAAATCTAAAATGTATAA
1 AAATATATAAAAT-TATAATTTATAA
* *
26460686 AAATGTATAAAATTATATTTTATAA
1 AAATATATAAAATTATAATTTATAA
26460711 AA
1 AA
26460713 TATCAAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 23 0.51
26 13 0.29
27 9 0.20
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (25 bp):
AAATATATAAAATTATAATTTATAA
Found at i:26460914 original size:20 final size:20
Alignment explanation
Indices: 26460881--26460919 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26460871 TTAGTTTCAA
26460881 ATAATATTTCTAATATTTTC
1 ATAATATTTCTAATATTTTC
* *
26460901 ATAATTTTTTTAATATTTT
1 ATAATATTTCTAATATTTT
26460920 TAGTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (20 bp):
ATAATATTTCTAATATTTTC
Found at i:26461877 original size:30 final size:29
Alignment explanation
Indices: 26461833--26461891 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
26461823 TATTTTATTA
26461833 TTAATTTTTTATTATTTTA-AAGACATTTG
1 TTAATTTTTTATTATTTTAGAA-ACATTTG
26461862 TTAATTTTGTTATTATTTTAGAAACATTTG
1 TTAATTTT-TTATTATTTTAGAAACATTTG
26461892 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 8 0.29
30 18 0.64
31 2 0.07
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (29 bp):
TTAATTTTTTATTATTTTAGAAACATTTG
Found at i:26462044 original size:12 final size:12
Alignment explanation
Indices: 26462014--26462046 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
26462004 TATATATTTT
26462014 AAAATT-ATATA
1 AAAATTAATATA
26462025 AAAA-TAATATA
1 AAAATTAATATA
26462036 AAAATTAATAT
1 AAAATTAATAT
26462047 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:26475162 original size:53 final size:52
Alignment explanation
Indices: 26475037--26475240 Score: 172
Period size: 52 Copynumber: 4.0 Consensus size: 52
26475027 TCACATATCA
* * * * *
26475037 CACATCGAAGCCATAGCCCTACCATGGTCTTACAC-GAATCACATAT-A-AT
1 CACACCGATGCCATAGCCCAACTATGGTCTTATACGGAATCACATATCACAT
* *
26475086 ---ACCGATGCCATATCCCAGA-TATGGTCTTATACGAAATCACATTATCACAT
1 CACACCGATGCCATAGCCCA-ACTATGGTCTTATACGGAATCACA-TATCACAT
* * *
26475136 CACACCGACGCCATAGCCCAACTATGGTCCTATACGGGAA-CACATATCACGT
1 CACACCGATGCCATAGCCCAACTATGGTCTTATAC-GGAATCACATATCACAT
** * * * **
26475188 TGCACCAATGCCATAGCCCAGCTATGTTCTTATACGGGCTCACATATCACAT
1 CACACCGATGCCATAGCCCAACTATGGTCTTATACGGAATCACATATCACAT
26475240 C
1 C
26475241 TTTTTCATCA
Statistics
Matches: 121, Mismatches: 23, Indels: 19
0.74 0.14 0.12
Matches are distributed among these distances:
46 24 0.20
47 8 0.07
48 3 0.02
49 1 0.01
50 2 0.02
51 2 0.02
52 47 0.39
53 31 0.26
54 3 0.02
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (52 bp):
CACACCGATGCCATAGCCCAACTATGGTCTTATACGGAATCACATATCACAT
Found at i:26476127 original size:13 final size:13
Alignment explanation
Indices: 26476085--26476137 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
26476075 AGTTTGGCAA
26476085 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
26476098 TGC-TGTGAAAAAA
1 TGCTTTTG-AAAAG
*
26476111 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
26476124 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
26476137 T
1 T
26476138 TTGGTTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
12 3 0.09
13 26 0.81
14 3 0.09
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:26479632 original size:9 final size:9
Alignment explanation
Indices: 26479618--26479694 Score: 63
Period size: 11 Copynumber: 8.3 Consensus size: 9
26479608 TACTCTTATT
26479618 AAAAATTAA
1 AAAAATTAA
26479627 AAAAATTATAA
1 AAAAA-T-TAA
26479638 AAAAATT-A
1 AAAAATTAA
26479646 AAAAATT--
1 AAAAATTAA
26479653 AAAAATTAGAA
1 AAAAATT--AA
*
26479664 AAAAATTAT
1 AAAAATTAA
26479673 AAAAATCGTAA
1 AAAAAT--TAA
26479684 AAAAA-TAA
1 AAAAATTAA
26479692 AAA
1 AAA
26479695 TTATAAAATT
Statistics
Matches: 58, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
7 7 0.12
8 14 0.24
9 13 0.22
10 2 0.03
11 22 0.38
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (9 bp):
AAAAATTAA
Found at i:26479656 original size:26 final size:28
Alignment explanation
Indices: 26479617--26479687 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 28
26479607 CTACTCTTAT
*
26479617 TAAAAATTAAAAAAATTATAAAAAAATTA
1 TAAAAATT-AAAAAATTAGAAAAAAATTA
26479646 -AAAAATT-AAAAATTAGAAAAAAATTA
1 TAAAAATTAAAAAATTAGAAAAAAATTA
26479672 TAAAAATCGTAAAAAA
1 TAAAAAT--TAAAAAA
26479688 ATAAAAATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
26 18 0.49
27 6 0.16
28 7 0.19
29 1 0.03
30 5 0.14
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (28 bp):
TAAAAATTAAAAAATTAGAAAAAAATTA
Found at i:26479666 original size:37 final size:36
Alignment explanation
Indices: 26479615--26479729 Score: 115
Period size: 37 Copynumber: 3.1 Consensus size: 36
26479605 CCCTACTCTT
26479615 ATTAAAAATT-AAAAAAATTATAAAAAAATTAAAAA
1 ATTAAAAATTAAAAAAAATTATAAAAAAATTAAAAA
***
26479650 ATTAAAAATTAGAAAAAAATTATAAAAATCGTAAAAA
1 ATTAAAAATTA-AAAAAAATTATAAAAAAATTAAAAA
* *** * *
26479687 AATAAAAATTATAAAATTTTTATAAAAATCATAAAAAA
1 ATTAAAAATTA-AAAAAAATTATAAAAA-AATTAAAAA
26479725 ATTAA
1 ATTAA
26479730 CGCCCATAGT
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
35 10 0.16
37 45 0.70
38 9 0.14
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.28
Consensus pattern (36 bp):
ATTAAAAATTAAAAAAAATTATAAAAAAATTAAAAA
Found at i:26479700 original size:9 final size:9
Alignment explanation
Indices: 26479617--26479723 Score: 69
Period size: 9 Copynumber: 11.7 Consensus size: 9
26479607 CTACTCTTAT
26479617 TAAAAATTA
1 TAAAAATTA
*
26479626 AAAAAATTA
1 TAAAAATTA
26479635 TAAAAAAATTA
1 T--AAAAATTA
26479646 -AAAAA-T-
1 TAAAAATTA
26479652 TAAAAATTAGA
1 TAAAAATT--A
*
26479663 AAAAAATTA
1 TAAAAATTA
**
26479672 TAAAAATCG
1 TAAAAATTA
*
26479681 TAAAAA-AA
1 TAAAAATTA
26479689 TAAAAATTA
1 TAAAAATTA
*
26479698 TAAAATTTTTA
1 TAAAA--ATTA
*
26479709 TAAAAATCA
1 TAAAAATTA
26479718 TAAAAA
1 TAAAAA
26479724 AATTAACGCC
Statistics
Matches: 76, Mismatches: 12, Indels: 20
0.70 0.11 0.19
Matches are distributed among these distances:
7 6 0.08
8 12 0.16
9 35 0.46
11 23 0.30
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (9 bp):
TAAAAATTA
Found at i:26479714 original size:46 final size:46
Alignment explanation
Indices: 26479617--26479723 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 46
26479607 CTACTCTTAT
* *
26479617 TAAAAATTAAAAAAATTATAAAAAAATTAAAAAATTAAAAATTAGA
1 TAAAAATTATAAAAATCATAAAAAAATTAAAAAATTAAAAATTAGA
* * **
26479663 AAAAAATTATAAAAATCGTAAAAAAA-T-AAAAATTATAAAATTTTTA
1 TAAAAATTATAAAAATCATAAAAAAATTAAAAAATTA-AAAA-TTAGA
*
26479709 TAAAAATCATAAAAA
1 TAAAAATTATAAAAA
26479724 AATTAACGCC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 8 0.16
45 5 0.10
46 38 0.75
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (46 bp):
TAAAAATTATAAAAATCATAAAAAAATTAAAAAATTAAAAATTAGA
Found at i:26480008 original size:30 final size:30
Alignment explanation
Indices: 26479921--26480055 Score: 89
Period size: 28 Copynumber: 4.8 Consensus size: 30
26479911 TTCTTACAAC
26479921 TTTATAAAATTTT--ATAGTTTTT-TATATT
1 TTTATAAAATTTTACATA-TTTTTATATATT
* * * *
26479949 TCTAT-ATATCTT--ATACTTTTTAT-GATT
1 TTTATAAAATTTTACATA-TTTTTATATATT
26479976 TTTATAAAATTTTACA-ATTTTATATATATT
1 TTTATAAAATTTTACATATTTT-TATATATT
* *
26480006 TTTAT--GATTTTATATATTTTTATATATT
1 TTTATAAAATTTTACATATTTTTATATATT
*
26480034 TTT-TAATATTTTA-AT-TTTTTAT
1 TTTATAAAATTTTACATATTTTTAT
26480056 TAAAATTTAA
Statistics
Matches: 86, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
27 28 0.33
28 34 0.40
29 15 0.17
30 9 0.10
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (30 bp):
TTTATAAAATTTTACATATTTTTATATATT
Found at i:26480022 original size:20 final size:20
Alignment explanation
Indices: 26479960--26480045 Score: 81
Period size: 20 Copynumber: 4.4 Consensus size: 20
26479950 CTATATATCT
26479960 TATACTTTTTATGATTTT-TA
1 TATA-TTTTTATGATTTTATA
* * **
26479980 TAAAATTTTACAATTTTATA
1 TATATTTTTATGATTTTATA
26480000 TATATTTTTATGATTTTATA
1 TATATTTTTATGATTTTATA
*
26480020 TAT-TTTTATAT-ATTTTTTA
1 TATATTTT-TATGATTTTATA
26480039 -ATATTTT
1 TATATTTT
26480046 AATTTTTTAT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
18 2 0.04
19 25 0.46
20 27 0.50
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (20 bp):
TATATTTTTATGATTTTATA
Found at i:26480028 original size:10 final size:10
Alignment explanation
Indices: 26479933--26480045 Score: 71
Period size: 10 Copynumber: 11.8 Consensus size: 10
26479923 TATAAAATTT
26479933 TATAGTTTTT-
1 TATA-TTTTTA
*
26479943 TATATTTCTA
1 TATATTTTTA
*
26479953 TATA-TCTTA
1 TATATTTTTA
*
26479962 TA-CTTTTTA
1 TATATTTTTA
*
26479971 T-GATTTTTA
1 TATATTTTTA
* *
26479980 TAAAATTTTA
1 TATATTTTTA
*
26479990 CA-ATTTTATA
1 TATATTTT-TA
26480000 TATATTTTTA
1 TATATTTTTA
*
26480010 T-GA-TTTTA
1 TATATTTTTA
26480018 TATATTTTTA
1 TATATTTTTA
26480028 TATATTTTT-
1 TATATTTTTA
26480037 TAATATTTT
1 T-ATATTTT
26480046 AATTTTTTAT
Statistics
Matches: 81, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
8 6 0.07
9 28 0.35
10 42 0.52
11 5 0.06
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (10 bp):
TATATTTTTA
Found at i:26480029 original size:8 final size:8
Alignment explanation
Indices: 26479939--26480056 Score: 51
Period size: 9 Copynumber: 13.2 Consensus size: 8
26479929 ATTTTATAGT
26479939 TTTTTATA
1 TTTTTATA
*
26479947 TTTCTATA
1 TTTTTATA
*
26479955 TATCTTATA
1 T-TTTTATA
26479964 CTTTTTATGA
1 -TTTTTAT-A
26479974 TTTTTATAAA
1 TTTTTAT--A
* *
26479984 ATTTTACAA
1 TTTTTA-TA
26479993 TTTTATATATA
1 -TTT-T-TATA
26480004 TTTTTATGA
1 TTTTTAT-A
26480013 TTTTATATA
1 TTTT-TATA
26480022 TTTTTATA
1 TTTTTATA
*
26480030 TATTTTTTAA
1 T-TTTTAT-A
26480040 TATTTTA-A
1 T-TTTTATA
26480048 TTTTT-TA
1 TTTTTATA
26480055 TT
1 TT
26480057 AAAATTTAAT
Statistics
Matches: 86, Mismatches: 11, Indels: 27
0.69 0.09 0.22
Matches are distributed among these distances:
7 7 0.08
8 18 0.21
9 34 0.40
10 23 0.27
11 2 0.02
12 2 0.02
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (8 bp):
TTTTTATA
Found at i:26484821 original size:21 final size:21
Alignment explanation
Indices: 26484783--26484822 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26484773 TTCAGTATCA
*
26484783 TTTTTATTTGTTTTAATATTT
1 TTTTTATTTGTTTAAATATTT
26484804 TTTTTATGTT-TTTAAATAT
1 TTTTTAT-TTGTTTAAATAT
26484823 ATTTGATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
TTTTTATTTGTTTAAATATTT
Found at i:26487068 original size:40 final size:40
Alignment explanation
Indices: 26487024--26487255 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
26487014 ATAACCACAA
*
26487024 GCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
26487064 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
26487104 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
26487144 GCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
26487184 GCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
26487224 GCACAATTGCCTTCGGGACTTAGCCTGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
26487256 CATTCAAATG
Statistics
Matches: 168, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 4 0.02
40 157 0.93
41 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:26487127 original size:80 final size:80
Alignment explanation
Indices: 26487024--26487255 Score: 358
Period size: 80 Copynumber: 2.9 Consensus size: 80
26487014 ATAACCACAA
* * * *
26487024 GCACAAATGCCCTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTAGC
*
26487088 CCGGATATATCAACTC
65 CCGGATATAGCAACTC
*
26487104 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
*
26487169 CGGGTATAGCAACTC
66 CGGATATAGCAACTC
* *
26487184 GCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
*
26487249 TGGATAT
66 CGGATAT
26487256 CATTCAAATG
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 135 0.97
81 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
CGGATATAGCAACTC
Found at i:26487228 original size:120 final size:120
Alignment explanation
Indices: 26486995--26487254 Score: 353
Period size: 120 Copynumber: 2.2 Consensus size: 120
26486985 ACCCAAGTTT
* * * *
26486995 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
* *
26487059 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
* * * * * * *
26487114 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
* *
26487179 AACTCGCACAAATGCCTTCGGGTCTTGGCCCGGATAAAATC-ACTAGCACAATTGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
*
26487234 CTTCGGGACTTAGCCTGGATA
1 CTTCGGGACTTAGCCCGGATA
26487255 TCATTCAAAT
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
119 10 0.08
120 108 0.89
121 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:26489191 original size:69 final size:69
Alignment explanation
Indices: 26489080--26489222 Score: 234
Period size: 69 Copynumber: 2.1 Consensus size: 69
26489070 TCGTTTACGA
* *
26489080 AGACTCCCATATATGTACTATGGGCTTAATGAGGGCAATTGCAATA-GTTATTAGTAAGCTGGTT
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAA-AGGTTATTAGTAAGCTGGTT
26489144 AAAAT
65 AAAAT
* *
26489149 AGACTCCTATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGGTGGTTA
1 AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
26489214 AAAT
66 AAAT
26489218 AGACT
1 AGACT
26489223 ACAACATACA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
68 1 0.01
69 68 0.99
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (69 bp):
AGACTCCCATATATGTACTAAGGGCTTAATGAAGGCAATTGCAAAGGTTATTAGTAAGCTGGTTA
AAAT
Found at i:26490840 original size:27 final size:27
Alignment explanation
Indices: 26490800--26490903 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 27
26490790 AATTCCTTCA
* *
26490800 ATATTACACTACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* *
26490827 ATTTTGCGCCACAAAGGCTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
* * *
26490854 ATATTATGCCAC--ATGTTTTTCTTTC
1 ATATTACGCCACAAAGGCTTTTCTTTC
*
26490879 ATATTACACCACAAAGGCTTTTCTT
1 ATATTACGCCACAAAGGCTTTTCTT
26490904 ACCTAACGTG
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
25 21 0.34
27 41 0.66
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (27 bp):
ATATTACGCCACAAAGGCTTTTCTTTC
Found at i:26499250 original size:27 final size:27
Alignment explanation
Indices: 26499220--26499397 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
26499210 ATATCGAGTC
* * * *
26499220 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
26499247 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26499274 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26499302 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26499329 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26499356 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26499383 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26499398 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26499359 original size:82 final size:81
Alignment explanation
Indices: 26499241--26499396 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
26499231 TGCTATATAA
*
26499241 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26499306 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26499323 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26499387 CACTTAGTGC
65 CACTTAGTGC
26499397 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26505837 original size:40 final size:38
Alignment explanation
Indices: 26505675--26505893 Score: 199
Period size: 39 Copynumber: 5.6 Consensus size: 38
26505665 TTGAATGCTG
* * * * *
26505675 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGT-TATAAA
** * * *
26505715 TCCGGACTAAGAT-CCGAAGGCTTTGTGCGAGATACAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTGTGCGAGTTATAAA
* *
26505753 TTCCGGGTTAAG-CCCGAAGGCTTTGTGCGAGATATAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTATAAA
*
26505791 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTT-ATAAA
* *
26505831 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTA-TAAA
* * *
26505870 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26505894 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
37 11 0.07
38 38 0.25
39 53 0.34
40 52 0.34
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (38 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTATAAA
Found at i:26505875 original size:39 final size:39
Alignment explanation
Indices: 26505675--26505893 Score: 196
Period size: 40 Copynumber: 5.6 Consensus size: 39
26505665 TTGAATGCTG
* * * * *
26505675 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
** *
26505715 TCCGGACTAAGAT-CCGAAGGCTTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTGTGCGAGATACTAAA
*
26505753 TTCCGGGTTAAG-CCCGAAGGCTTTGTGCGAGATA-TAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* **
26505791 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
26505831 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
26505870 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26505894 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 15, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
37 11 0.07
38 37 0.24
39 52 0.33
40 54 0.35
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:26505913 original size:79 final size:78
Alignment explanation
Indices: 26505754--26505928 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 78
26505744 AGATACAAAT
* * * *
26505754 TCCGGGTTAAG-CCCGAAGGCTTTGTGCGAGATATAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATATAAAACCGGGCTAAGTCCCGAAGGCATTCGA
* ** *
26505818 GCGAGTTGTTAAA
66 ACGAGGAGCTAAA
* * * * *
26505831 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATA-TAAAACCGGGCTAAGTCCCGAAGGCATTCG
*
26505896 AACGAGGAGCTATA
65 AACGAGGAGCTAAA
*
26505910 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26505929 TACGTGATTT
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
77 10 0.12
78 33 0.41
79 37 0.46
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATATAAAACCGGGCTAAGTCCCGAAGGCATTCGA
ACGAGGAGCTAAA
Found at i:26513606 original size:40 final size:39
Alignment explanation
Indices: 26513570--26513721 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 39
26513560 ATATCCGGAC
* *
26513570 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* *
26513610 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* **
26513650 TAAGTCCTGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCC-GAAGGCATTCGTGCGAGATACTAAATCCGGGT
* * *
26513690 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAA
26513722 ACCGNNNNNN
Statistics
Matches: 100, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
39 15 0.15
40 83 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
Found at i:26513662 original size:80 final size:79
Alignment explanation
Indices: 26513523--26513721 Score: 220
Period size: 80 Copynumber: 2.5 Consensus size: 79
26513513 TTGAATGCTG
* * * * * * *
26513523 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGACTAAGATCCGAAGGCATTC
26513588 GTGCGAGATACTAAA
65 GTGCGAGATACTAAA
* **
26513603 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAG-TCCTGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGACTAAGATCC-GAAGGCATT
* **
26513667 CGTGCGAGTTGTTAAA
64 CGTGCGAGATACTAAA
* * *
26513683 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAA
26513722 ACCGNNNNNN
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 16 0.16
80 81 0.80
81 4 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGACTAAGATCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:26531414 original size:27 final size:27
Alignment explanation
Indices: 26531384--26531560 Score: 158
Period size: 27 Copynumber: 6.5 Consensus size: 27
26531374 AAATTGTACA
* *
26531384 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* ** *
26531411 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGATTTGACTATG-TG
* * *
26531438 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
26531465 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* **
26531493 GCACTAAGTGTGCGATTTGATTACATG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
26531520 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
26531547 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26531561 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:26531497 original size:82 final size:81
Alignment explanation
Indices: 26531384--26531539 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
26531374 AAATTGTACA
* * * *
26531384 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATA-CATGGCACTAAGTG
26531448 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
26531465 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACATGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACATGGCACTAAGTG
*
26531530 TGCGAGTTGA
65 TGCGAATTGA
26531540 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 16 0.25
82 48 0.75
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACATGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26531551 original size:82 final size:81
Alignment explanation
Indices: 26531380--26531560 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
26531370 GATTAAATTG
* * * * *
26531380 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
26531445 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26531461 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTA-CATGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATATCAT-GCACT
* **
26531525 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26531543 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26531561 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATATCATGCACTAA
GTGTGCGAATTGACCA
Found at i:26537981 original size:646 final size:646
Alignment explanation
Indices: 26536751--26538040 Score: 2553
Period size: 646 Copynumber: 2.0 Consensus size: 646
26536741 ACTTCCAGGC
*
26536751 CCAAAAATCAGGGCGTTACAGAGACAGTACATTATCACGGATTGGTGGCATTTATAGCGAGACTC
1 CCAAAAATCAGGGCGTTACAGAGACAGCACATTATCACGGATTGGTGGCATTTATAGCGAGACTC
26536816 TTATTAATGCTAGGTTATTTCAAGAATCAACTAAATCATAGCTCTGATGCCACTAAATGTAACAC
66 TTATTAATGCTAGGTTATTTCAAGAATCAACTAAATCATAGCTCTGATGCCACTAAATGTAACAC
26536881 CCCCTACCTGTGTCCGACGACAGGACAGGATATGAGGCATTAACGTACTTAAAGGTAAATAATCA
131 CCCCTACCTGTGTCCGACGACAGGACAGGATATGAGGCATTAACGTACTTAAAGGTAAATAATCA
26536946 TGCAAACCGGGCCATAAAATTTCATTCATATTTTAAAAAATTCAATCACATACACATAGTTCCTT
196 TGCAAACCGGGCCATAAAATTTCATTCATATTTTAAAAAATTCAATCACATACACATAGTTCCTT
26537011 ATTTGGGTTTACGAAACCCAAAACATACTTTAGAAAGGGTTCAAAACTAAATCGAGAACTTTGGA
261 ATTTGGGTTTACGAAACCCAAAACATACTTTAGAAAGGGTTCAAAACTAAATCGAGAACTTTGGA
26537076 AAGCTCTGGGAAAAGTTTAGAAATTATTCTCATGAAACAGGGTCACACGCCCGTGTACCATCAAC
326 AAGCTCTGGGAAAAGTTTAGAAATTATTCTCATGAAACAGGGTCACACGCCCGTGTACCATCAAC
*
26537141 ACGTCCGTGTCCTCAGGCCGTGTAACTCTCTATTTATGACGTCAACAAATAAATTGAACCACATG
391 ACGTCCGTGTCCTCAGGCCGTGTAACTCTCTATTCATGACGTCAACAAATAAATTGAACCACATG
26537206 GCCAGGCCACATGCCCGTGTCACCAGGACGTGTCCCTCACACGGTTGAGACACACGGCCGTGTCT
456 GCCAGGCCACATGCCCGTGTCACCAGGACGTGTCCCTCACACGGTTGAGACACACGGCCGTGTCT
26537271 CATCCCGTGTAGTTAACTCTTAGGCTATTTTCCAAGCCTTTTTGTTACCCTTACATGCACACACA
521 CATCCCGTGTAGTTAACTCTTAGGCTATTTTCCAAGCCTTTTTGTTACCCTTACATGCACACACA
26537336 TATACATGGATCCAATGGCATTCAACATCCTCAATTATGATACAAACATATCATTTATCAT
586 TATACATGGATCCAATGGCATTCAACATCCTCAATTATGATACAAACATATCATTTATCAT
26537397 CCAAAAATCAGGGCGTTACAGAGACAGCACATTATCACGGATTGGTGGCATTTATAGCGAGACTC
1 CCAAAAATCAGGGCGTTACAGAGACAGCACATTATCACGGATTGGTGGCATTTATAGCGAGACTC
26537462 TTATTAATGCTAGGTTATTTCAAGAATCAACTAAATCATAGCTCTGATGCCACTAAATGTAACAC
66 TTATTAATGCTAGGTTATTTCAAGAATCAACTAAATCATAGCTCTGATGCCACTAAATGTAACAC
26537527 CCCCTACCTGTGTCCGACGACAGGACAGGATATGAGGCATTAACGTACTTAAAGGTAAATAATCA
131 CCCCTACCTGTGTCCGACGACAGGACAGGATATGAGGCATTAACGTACTTAAAGGTAAATAATCA
*
26537592 TGCAAACTGGGCCATAAAATTTCATTCATATTTTAAAAAATTCAATCACATACACATAGTTCCTT
196 TGCAAACCGGGCCATAAAATTTCATTCATATTTTAAAAAATTCAATCACATACACATAGTTCCTT
26537657 ATTTGGGTTTACGAAACCCAAAACATACTTTAGAAAGGGTTCAAAACTAAATCGAGAACTTTGGA
261 ATTTGGGTTTACGAAACCCAAAACATACTTTAGAAAGGGTTCAAAACTAAATCGAGAACTTTGGA
26537722 AAGCTCTGGGAAAAGTTTAGAAATTATTCTCATGAAACAGGGTCACACGCCCGTGTACCATCAAC
326 AAGCTCTGGGAAAAGTTTAGAAATTATTCTCATGAAACAGGGTCACACGCCCGTGTACCATCAAC
26537787 ACGTCCGTGTCCTCAGGCCGTGTAACTCTCTATTCATGACGTCAACAAATAAATTGAACCACATG
391 ACGTCCGTGTCCTCAGGCCGTGTAACTCTCTATTCATGACGTCAACAAATAAATTGAACCACATG
26537852 GCCAGGCCACATGCCCGTGTCACCAGGACGTGTCCCTCACACGGTTGAGACACACGGCCGTGTCT
456 GCCAGGCCACATGCCCGTGTCACCAGGACGTGTCCCTCACACGGTTGAGACACACGGCCGTGTCT
26537917 CATCCCGTGTAGTTAACTCTTAGGCTATTTTCCAAGCCTTTTTGTTACCCTTACATGCACACACA
521 CATCCCGTGTAGTTAACTCTTAGGCTATTTTCCAAGCCTTTTTGTTACCCTTACATGCACACACA
26537982 TATACATGGATCCAATGGCATTCAACATCCTCAATTATGATACAAACATATCATTTATC
586 TATACATGGATCCAATGGCATTCAACATCCTCAATTATGATACAAACATATCATTTATC
26538041 TATCAACATG
Statistics
Matches: 641, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
646 641 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (646 bp):
CCAAAAATCAGGGCGTTACAGAGACAGCACATTATCACGGATTGGTGGCATTTATAGCGAGACTC
TTATTAATGCTAGGTTATTTCAAGAATCAACTAAATCATAGCTCTGATGCCACTAAATGTAACAC
CCCCTACCTGTGTCCGACGACAGGACAGGATATGAGGCATTAACGTACTTAAAGGTAAATAATCA
TGCAAACCGGGCCATAAAATTTCATTCATATTTTAAAAAATTCAATCACATACACATAGTTCCTT
ATTTGGGTTTACGAAACCCAAAACATACTTTAGAAAGGGTTCAAAACTAAATCGAGAACTTTGGA
AAGCTCTGGGAAAAGTTTAGAAATTATTCTCATGAAACAGGGTCACACGCCCGTGTACCATCAAC
ACGTCCGTGTCCTCAGGCCGTGTAACTCTCTATTCATGACGTCAACAAATAAATTGAACCACATG
GCCAGGCCACATGCCCGTGTCACCAGGACGTGTCCCTCACACGGTTGAGACACACGGCCGTGTCT
CATCCCGTGTAGTTAACTCTTAGGCTATTTTCCAAGCCTTTTTGTTACCCTTACATGCACACACA
TATACATGGATCCAATGGCATTCAACATCCTCAATTATGATACAAACATATCATTTATCAT
Found at i:26540396 original size:50 final size:50
Alignment explanation
Indices: 26540276--26540557 Score: 289
Period size: 50 Copynumber: 5.6 Consensus size: 50
26540266 ATTGTGAGAA
* * ** *** *
26540276 CACATGTGTAGTACTATGTGTAGGCTACTATTTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* *
26540328 CACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * * *
26540378 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * * *
26540429 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTATGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* *
26540479 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
*
26540528 CGCATGTGTAGTACTAAGTGCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
26540558 TGCGTACTAC
Statistics
Matches: 190, Mismatches: 37, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
49 32 0.17
50 85 0.45
51 38 0.20
52 35 0.18
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:26540456 original size:101 final size:101
Alignment explanation
Indices: 26540327--26540516 Score: 317
Period size: 101 Copynumber: 1.9 Consensus size: 101
26540317 TGGTTTTAGG
* * *
26540327 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
26540392 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
66 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
* * *
26540428 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTATGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
26540493 TAAGTGCAGGCTACTATGTGTACC
66 TAAGTGCAGGCTACTATGCGTACC
26540517 AGATTGTTGG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 82 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
Found at i:26540790 original size:16 final size:15
Alignment explanation
Indices: 26540769--26540798 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26540759 GAATGGAGTA
26540769 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26540785 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26540799 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26546176 original size:24 final size:24
Alignment explanation
Indices: 26546149--26546226 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 24
26546139 ATCAAGGCCG
26546149 ACACCATGTCCCACACATGGTCTT
1 ACACCATGTCCCACACATGGTCTT
* * * * * *
26546173 ACACTATCTCTCACATATCCGTGCTG
1 ACACCATGTCCCACACAT-GGT-CTT
** *
26546199 ATGCCATGTCCCAGACATGGTCTT
1 ACACCATGTCCCACACATGGTCTT
26546223 ACAC
1 ACAC
26546227 TGACACCTCT
Statistics
Matches: 35, Mismatches: 17, Indels: 4
0.62 0.30 0.07
Matches are distributed among these distances:
24 18 0.51
25 4 0.11
26 13 0.37
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (24 bp):
ACACCATGTCCCACACATGGTCTT
Found at i:26546419 original size:48 final size:47
Alignment explanation
Indices: 26546050--26546459 Score: 242
Period size: 46 Copynumber: 8.7 Consensus size: 47
26546040 GGGTATAATA
*
26546050 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCTC-TCAATG
** * * * ** *
26546097 TTGATGCCATGTCCTAGACATGGTCTTACACTAACTATCGAAATCAAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--TCTCAATG
** * * * **
26546146 CCGACACCATGTCCCACACATGGTCTTACACTATCTCTCACATATCCGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--C-TCTCAATG
* *
26546196 CTGATGCCATGTCCCAGACATGGTCTTACACT-GACAC-CTCT-ATACGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCTCTCA-A--TG
* * * * * **
26546244 TCGATGCGATGTCCCAGGCATGGTCTTACAC-CGATACATCT-TGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-C-TCTCTCAATG
* * *
26546290 CCGA-GACATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-C-TCTCAATG
*
26546336 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-TCTCAATG
* * *
26546382 CCGATCCCATGTCCCAGACATGGTCTTACACTGGCTCTC-AT-AATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCAA--T-G
26546430 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
26546460 GGCACACAAA
Statistics
Matches: 284, Mismatches: 52, Indels: 55
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 10 0.04
45 19 0.07
46 63 0.22
47 62 0.22
48 57 0.20
49 33 0.12
50 37 0.13
51 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCTCTCAATG
Found at i:26548913 original size:47 final size:48
Alignment explanation
Indices: 26548844--26549117 Score: 252
Period size: 47 Copynumber: 5.9 Consensus size: 48
26548834 ATAATGTACT
* * *
26548844 GATGCCATATCCCAGACATGGTCTTACACTGGCTCAT-ATCTCCA-GTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGGCC
* * *
26548891 GATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCGTA-GCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGGCC
* *
26548939 GATG-CATGTCCCAGACATGTCTTACACT-GCTTA-CATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGCC
* * *
26548984 GATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGCC
* * **
26549030 GATGCCATGTCCCAGACATGTCTTACAGTGGCTC-TCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCAT-CTCAAGGCC
* * *
26549077 CATG-CATGTCCTAGACATGTCTTACACTAGCTCA-CA-CTCAA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAA
26549118 ATGACACAAA
Statistics
Matches: 191, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
44 2 0.01
45 39 0.20
46 57 0.30
47 85 0.45
48 8 0.04
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGGCC
Found at i:26549100 original size:93 final size:91
Alignment explanation
Indices: 26548896--26549109 Score: 256
Period size: 93 Copynumber: 2.3 Consensus size: 91
26548886 CAGTCGATGC
* * * *
26548896 CATGTCCCAAACATGGTCTTACACT-GACTATCATCTC-GTAGCCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTCAAT-GCCGATGCATGTCCCAGACATGT
* *
26548959 CTTACACTGCTTACATCTCGAGGCCGATG
63 CTTACACTGCTTACATATCGAGGCCCATG
26548988 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGTCT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATG-CATGTCCCAGACATGTCT
* *
26549053 TACAGTGGCTCT-CATAAT-GTGGCCCATG
65 TACACT-GCT-TACAT-ATCGAGGCCCATG
*
26549081 CATGTCCTAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
26549110 ACACTCAAAT
Statistics
Matches: 107, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
91 25 0.23
92 38 0.36
93 42 0.39
94 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCATGTCCCAGACATGTCTT
ACACTGCTTACATATCGAGGCCCATG
Found at i:26549102 original size:46 final size:45
Alignment explanation
Indices: 26548890--26549109 Score: 191
Period size: 46 Copynumber: 4.7 Consensus size: 45
26548880 TATCTCCAGT
* * * *
26548890 CGATGCCATGTCCCAAACATGGTCTTACACTGACTATCAT-CTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTG-CTCTCATAAT-GTGGC
* *
26548938 CGATGCATGTCCCAGACATGTCTTACACTGCT-TACAT-CTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGCTCT-CATAAT-GTGGC
*
26548983 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA--T-GC
1 CGATGCATGTCCCAGACATGTCTTACACT-GCTCTC--AT-AATGTGGC
*
26549029 CGATGCCATGTCCCAGACATGTCTTACAGTGGCTCTCATAATGTGGC
1 CGATG-CATGTCCCAGACATGTCTTACACT-GCTCTCATAATGTGGC
* *
26549076 CCATGCATGTCCTAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACT-GCTC
26549110 ACACTCAAAT
Statistics
Matches: 148, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
44 3 0.02
45 41 0.28
46 49 0.33
47 49 0.33
48 6 0.04
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGCTCTCATAATGTGGC
Found at i:26549102 original size:138 final size:140
Alignment explanation
Indices: 26548844--26549104 Score: 343
Period size: 138 Copynumber: 1.9 Consensus size: 140
26548834 ATAATGTACT
* * *
26548844 GATGCCATATCCCAGACATGGTCTTACACTGGCTCATATCTCCAGTCGATGCCATGTCCCAAACA
1 GATGCCATATCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAACA
* *
26548909 TGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGCTTACA
66 TGGTCTTACACTGACTATCATATCGTAGCCCATGCATGTCCCAGACATGTCTTACACTGCTTACA
26548974 TCTCGAGGCC
131 TCTCGAGGCC
* * *
26548984 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGCCGATGCCATGTCCCAGA
1 GATGCCATATCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCGATGCCATGTCCCAAA
* * * * *
26549046 CAT-GTCTTACAGTGGCTCTCATAAT-GTGGCCCATGCATGTCCTAGACATGTCTTACACT
64 CATGGTCTTACACTGACTATCAT-ATCGTAGCCCATGCATGTCCCAGACATGTCTTACACT
26549105 AGCTCACACT
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
137 1 0.01
138 66 0.63
139 34 0.32
140 4 0.04
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (140 bp):
GATGCCATATCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAAACA
TGGTCTTACACTGACTATCATATCGTAGCCCATGCATGTCCCAGACATGTCTTACACTGCTTACA
TCTCGAGGCC
Found at i:26559536 original size:49 final size:49
Alignment explanation
Indices: 26559473--26559698 Score: 265
Period size: 49 Copynumber: 4.6 Consensus size: 49
26559463 CTAGTATGCA
* *
26559473 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCTGGTACACG
* * ** *
26559522 TAGTAGCCTCCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACC-AATTATCTGGTACACG
** * * *
26559572 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATC-GAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCTG-GTACACG
** *
26559623 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCTGGTACACG
*
26559672 TAGTAGCCGGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
26559699 GTGGCCTCAC
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
49 65 0.43
50 48 0.32
51 37 0.25
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCTGGTACACG
Found at i:26562460 original size:15 final size:15
Alignment explanation
Indices: 26562442--26562474 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26562432 GAAGCCCAGA
26562442 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
26562457 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
26562472 ATA
1 ATA
26562475 CGAGAATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26565582 original size:49 final size:49
Alignment explanation
Indices: 26565522--26565760 Score: 307
Period size: 49 Copynumber: 4.8 Consensus size: 49
26565512 AGGCTATCTA
* *
26565522 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
* ** *
26565571 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCG
* * * *
26565621 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG
* * ** *
26565672 GTACGCATAGTAGCCTGCACTTAGTACTACACGTGCGACCAATTATTCG
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
*
26565721 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
26565761 TCACAACAGA
Statistics
Matches: 162, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 77 0.48
50 48 0.30
51 37 0.23
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
Found at i:26565699 original size:101 final size:98
Alignment explanation
Indices: 26565523--26565760 Score: 316
Period size: 100 Copynumber: 2.4 Consensus size: 98
26565513 GGCTATCTAG
* * * *
26565523 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTG
*
26565588 CACTTAGTACTACACACGTGACCTAACCA-TCTGA
66 CACTTAGTACTACACACGCGACC-AACCATTC-GA
* * *
26565622 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCC
** ** *
26565687 TGCACTTAGTACTACACGTGCGACCAATTATTCGG
64 TGCACTTAGTACTACACACGCGACCAACCATTCGA
26565722 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
26565761 TCACAACAGA
Statistics
Matches: 122, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
99 35 0.29
100 44 0.36
101 43 0.35
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (98 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTG
CACTTAGTACTACACACGCGACCAACCATTCGA
Found at i:26577516 original size:45 final size:44
Alignment explanation
Indices: 26577432--26577516 Score: 134
Period size: 45 Copynumber: 1.9 Consensus size: 44
26577422 ATGTAATCTA
* *
26577432 AACTGATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCCG
1 AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCG
*
26577476 AACTCATTGAGTTGTGGTCTGAGTTCATGATATGTATGACA
1 AACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGACA
26577517 GATGTTTTGG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 14 0.38
45 23 0.62
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (44 bp):
AACTCATTGAGTTGTGTCTGAGTTCATGATATATATGACATCCG
Found at i:26578986 original size:18 final size:18
Alignment explanation
Indices: 26578945--26578986 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 18
26578935 TGGGCTGAGG
26578945 ACACGAGCGTGTCCCGTGCC
1 ACACGAGCGTGT--CGTGCC
26578965 ACACGAGCGTGT-GTGACC
1 ACACGAGCGTGTCGTG-CC
26578983 ACAC
1 ACAC
26578987 AGCCTACCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 3 0.14
18 6 0.29
20 12 0.57
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (18 bp):
ACACGAGCGTGTCGTGCC
Found at i:26581860 original size:40 final size:40
Alignment explanation
Indices: 26581785--26581965 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
26581775 CAGATGTAAC
* * *
26581785 AACCAGCACAAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
26581825 AACCCGCACGAATACCTTCCGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
26581865 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
26581905 AACCCGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
**
26581945 AACTAGCAC-AATTGCCTTCGG
1 AACCCGCACGAA-TGCCTTCGG
26581966 ATCTTAGTCC
Statistics
Matches: 130, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.02
40 128 0.98
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:26589741 original size:40 final size:40
Alignment explanation
Indices: 26589604--26589726 Score: 192
Period size: 40 Copynumber: 3.1 Consensus size: 40
26589594 CAGATGTAAC
* *
26589604 AACCAGCACGAATGCCTTCAGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
* *
26589644 AACCCGCACGAATACCTTCCGGACTTGACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
**
26589684 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
26589724 AAC
1 AAC
26589727 TAGCACAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCCGGACTTAACCCGGTTATAAT
Found at i:26591752 original size:18 final size:18
Alignment explanation
Indices: 26591725--26591766 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
26591715 TCTTTCGAAA
26591725 CTCA-GTCTAAAAGAATT
1 CTCAGGTCTAAAAGAATT
26591742 CTCAGGTCTAAAAGAATT
1 CTCAGGTCTAAAAGAATT
26591760 CTCAGGT
1 CTCAGGT
26591767 GACTCTCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (18 bp):
CTCAGGTCTAAAAGAATT
Found at i:26593353 original size:80 final size:79
Alignment explanation
Indices: 26593199--26593419 Score: 282
Period size: 80 Copynumber: 2.8 Consensus size: 79
26593189 ACCCAAGTTT
* * * * * * *
26593199 CTTCGGAAT-TTAGCCGGATATAACCACAAGGACAAATGCCTTCGGGTCTTAGCCCGGATTTAGT
1 CTTCGG-ATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
26593263 AACACACACAAATGC
65 AACACACACAAATGC
* *
26593278 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGC
* *
26593343 AACTCGCACAAATGC
65 AACACACACAAATGC
* * *
26593358 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTACCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAG-CCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
26593420 CATTCAAATG
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 111 0.90
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (79 bp):
CTTCGGATCTTAGCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCA
ACACACACAAATGC
Found at i:26593418 original size:40 final size:40
Alignment explanation
Indices: 26593199--26593418 Score: 173
Period size: 40 Copynumber: 5.5 Consensus size: 40
26593189 ACCCAAGTTT
* * * * * * *
26593199 CTTCGGAATTTAG-CCGGATATAACCACAAGGACAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGC
* * *
26593238 CTTCGGGTCTTAGCCCGGATTTAGTAA-CAC-A-CACAAATGC
1 CTTCGGGACTTAGCCCGGA--TA-AAATCACTAGCACAATTGC
*
26593278 CTTC-GGATCTTAGTCCGGATAAAATCACTAGCACAATTGC
1 CTTCGGGA-CTTAGCCCGGATAAAATCACTAGCACAATTGC
* * * * * * *
26593318 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAATTGC
* *
26593358 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTAC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGC
26593398 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
26593419 TCATTCAAAT
Statistics
Matches: 146, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
37 2 0.01
38 5 0.03
39 16 0.11
40 109 0.75
41 6 0.04
42 5 0.03
43 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAATTGC
Found at i:26596107 original size:12 final size:12
Alignment explanation
Indices: 26596090--26596117 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26596080 CACACACGCT
26596090 CGTGTGCTAGGC
1 CGTGTGCTAGGC
26596102 CGTGTGCTAGGC
1 CGTGTGCTAGGC
26596114 CGTG
1 CGTG
26596118 CCAAACCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:26596708 original size:96 final size:95
Alignment explanation
Indices: 26596579--26596770 Score: 330
Period size: 96 Copynumber: 2.0 Consensus size: 95
26596569 TTAAATTCTT
* *
26596579 ACCTATCATACATCATTTTGCACCAATTTATAAGCATGATATCAATTCCATAAACTACATAATAT
1 ACCTATCATACATCATTTTGCACCAATTCATAAGCATGATATCAATTCCACAAACTACATAATAT
* *
26596644 AAGTCATTCACATATCCATTTTTGGACTCAA
66 AAGGCATTCACATATCCA-TTATGGACTCAA
*
26596675 ACCTATCATGCATCATTTTGCACCAATTCATAAGCATGATATCAATTCCACAAACTACATAATAT
1 ACCTATCATACATCATTTTGCACCAATTCATAAGCATGATATCAATTCCACAAACTACATAATAT
26596740 AAGGCATTCACATATCCATTATGGACTCAA
66 AAGGCATTCACATATCCATTATGGACTCAA
26596770 A
1 A
26596771 ATATCAACCA
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
95 12 0.13
96 79 0.87
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.32
Consensus pattern (95 bp):
ACCTATCATACATCATTTTGCACCAATTCATAAGCATGATATCAATTCCACAAACTACATAATAT
AAGGCATTCACATATCCATTATGGACTCAA
Found at i:26598032 original size:45 final size:44
Alignment explanation
Indices: 26597982--26598098 Score: 171
Period size: 45 Copynumber: 2.6 Consensus size: 44
26597972 ATCATTTCAT
26597982 CGGCATTATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTC-AAAGCCCGAATAGTATCTCAC
* * * *
26598027 TGGCATTATAGCCTGCTAGGCCCACAGGCCCGAATAGTGTCTCAC
1 CGGCATTATAGCCTGCTAGGCTCA-AAGCCCGAATAGTATCTCAC
*
26598072 CGGCATAATAGCCTGCTAGGCTCAAAG
1 CGGCATTATAGCCTGCTAGGCTCAAAG
26598099 GCTCAAATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 3 0.05
45 60 0.95
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (44 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGCCCGAATAGTATCTCAC
Found at i:26598148 original size:38 final size:36
Alignment explanation
Indices: 26598105--26598221 Score: 117
Period size: 38 Copynumber: 3.1 Consensus size: 36
26598095 AAAGGCTCAA
26598105 ATATAATACCAGCACTAGGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACTA-GCCTGC-GGATTTAACCCGG
* * * *
26598143 ATATAATACCAGCACGAAGCCTGTGGGATTTCACCCAG
1 ATATAATACCAGCAC-TAGCCTG-CGGATTTAACCCGG
* * *
26598181 ATATAATTCCAGCACATAGCCTGCGGTCTTTAAGCCGG
1 ATATAATACCAGCAC-TAGCCTGCGG-ATTTAACCCGG
26598219 ATA
1 ATA
26598222 CAAATATCAT
Statistics
Matches: 64, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
37 2 0.03
38 61 0.95
39 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (36 bp):
ATATAATACCAGCACTAGCCTGCGGATTTAACCCGG
Found at i:26598556 original size:45 final size:43
Alignment explanation
Indices: 26598490--26598606 Score: 139
Period size: 42 Copynumber: 2.7 Consensus size: 43
26598480 ACATAACATT
*
26598490 TCATTTCACCGACATTATAGCCTGCTAGGCTCAAAGGCTCAAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GC-CAAAT-A
* * * **
26598536 T-ATTTCACCGGCATCATAGCCTACTA-ACTCAAAGCCCGATA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCAAATA
26598577 TCATTTCACCGGCATTATAGCCTGCTAGGC
1 TCATTTCACCGGCATTATAGCCTGCTAGGC
26598607 CCGAAGCCCG
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.03
42 26 0.43
43 3 0.05
44 6 0.10
45 22 0.37
46 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (43 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCAAATA
Found at i:26602678 original size:13 final size:14
Alignment explanation
Indices: 26602654--26602682 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26602644 TATTTATTAA
26602654 TTACTAAATTAACC
1 TTACTAAATTAACC
26602668 TTACT-AATTAACC
1 TTACTAAATTAACC
26602681 TT
1 TT
26602683 TAAAACAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (14 bp):
TTACTAAATTAACC
Found at i:26604155 original size:103 final size:102
Alignment explanation
Indices: 26603699--26604215 Score: 631
Period size: 104 Copynumber: 5.0 Consensus size: 102
26603689 AATTTTTTTA
* * * * *
26603699 TTTTTTTACAATTATTTTAAAATTATTTTGTTAGTAATTTATGATTATGTTATAATTTCTTTGTG
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAA-TTGTTTGTG
* * * *
26603764 TTTTAGCTTAGTATTTTGTGAATTTTTATTAAT-TCAA-
65 -TTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
* * *
26603801 -TTTTTT-AAATTATTTTAAAATTATTTTGTTAGTAATTTATGATTATGTTATAATTTGTTTGAT
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAA-TTGTTTG-T
*
26603864 GTTTTAGTTTAGTGTTTTGTGAATTTTTATTAATGT-AA-
64 G-TTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
* * *
26603902 TTTTTTT-AAATTACTTTATAGTTATTTTGTTAATAAATTATGATTAGGTTATAAATTG-TTGT-
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTAT-AATTGTTTGTG
*
26603964 TTTCAGTTTAGTATTTTGTGATTTTTTATTAATGTAAATT
65 TTT-AGTTTAGTGTTTTGTGATTTTTTATTAATGTAAA-T
*
26604004 TATTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATAATTAGGTTATTAATT-TTTGT
1 T-TTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTA-TAATTGTTTGT
* *
26604068 GTTTAGTTTAGCGTTTTGTGATTTTTTATGAATGTAAAT
64 GTTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
* * *
26604107 TTATTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGTTTAGAAATTGTTAGT
1 TT-TTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTA-TAATTGTTTGT
* *
26604172 GTTTAGTTTACTGTTTTGTGATTTTTTATGAATGTAAAT
64 GTTTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
26604211 TTTTT
1 TTTTT
26604216 ATAATGTAAT
Statistics
Matches: 374, Mismatches: 26, Indels: 29
0.87 0.06 0.07
Matches are distributed among these distances:
98 3 0.01
99 29 0.08
100 56 0.15
101 44 0.12
102 51 0.14
103 65 0.17
104 122 0.33
105 4 0.01
ACGTcount: A:0.27, C:0.02, G:0.12, T:0.59
Consensus pattern (102 bp):
TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAATTGTTTGTGT
TTAGTTTAGTGTTTTGTGATTTTTTATTAATGTAAAT
Found at i:26604221 original size:16 final size:16
Alignment explanation
Indices: 26604192--26604228 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
26604182 CTGTTTTGTG
26604192 ATTTTTTATGAATGTAA
1 ATTTTTTATGAATGT-A
26604209 ATTTTTTAT-AATGTA
1 ATTTTTTATGAATGTA
26604224 ATTTT
1 ATTTT
26604229 ATTTGTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 6 0.30
16 5 0.25
17 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTTTTTATGAATGTA
Found at i:26606356 original size:33 final size:33
Alignment explanation
Indices: 26606297--26606374 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
26606287 TATCTATCTT
* * *
26606297 AGTACTCCACTCCTCCCAGCCTGTATCTACCGC
1 AGTACTCCACTCCTCCCAGACTGTATCCACCAC
*
26606330 AGTACTCCACTCCTCCC-GACTCGTATCCACTAC
1 AGTACTCCACTCCTCCCAGACT-GTATCCACCAC
26606363 AGTACTCCACTC
1 AGTACTCCACTC
26606375 ATCCTGGCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
32 3 0.08
33 37 0.93
ACGTcount: A:0.21, C:0.45, G:0.10, T:0.24
Consensus pattern (33 bp):
AGTACTCCACTCCTCCCAGACTGTATCCACCAC
Found at i:26608903 original size:40 final size:40
Alignment explanation
Indices: 26608781--26608908 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
26608771 TATTCGGATG
*
26608781 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-CT
* * *
26608821 A-ATTCCGAGCTAAGCCCCGAAGGCATTTGTGCGAGTTA-CT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCT
* * *
26608861 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCT
*
26608901 ATATCCGG
1 ATAACCGG
26608909 TTAAATTCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
39 3 0.04
40 67 0.93
41 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCT
Found at i:26614581 original size:80 final size:80
Alignment explanation
Indices: 26614448--26614601 Score: 281
Period size: 80 Copynumber: 1.9 Consensus size: 80
26614438 TCTTTTTTAC
*
26614448 GTTGATTTTTACGAAGAATTTGCTTGAGTAAATCGAAACAGATGCTAAAGACCTTCTTGTCCCGA
1 GTTGATTTTTACGAAGAATTTGCTTGAGTAAATCGAAACAAATGCTAAAGACCTTCTTGTCCCGA
26614513 AGTAATAAATTTTGT
66 AGTAATAAATTTTGT
* *
26614528 GTTGATTTTTATGAAGAATTTGCTTGAGTAAATCGAAACAAATGCTAAAGACCTTCTTGTCCTGA
1 GTTGATTTTTACGAAGAATTTGCTTGAGTAAATCGAAACAAATGCTAAAGACCTTCTTGTCCCGA
26614593 AGTAATAAA
66 AGTAATAAA
26614602 ATGCCACATC
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (80 bp):
GTTGATTTTTACGAAGAATTTGCTTGAGTAAATCGAAACAAATGCTAAAGACCTTCTTGTCCCGA
AGTAATAAATTTTGT
Found at i:26615029 original size:15 final size:15
Alignment explanation
Indices: 26615005--26615038 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26614995 GACTAATATG
*
26615005 AAAATAATAATAATA
1 AAAATAATAAAAATA
*
26615020 AAAATGATAAAAATA
1 AAAATAATAAAAATA
26615035 AAAA
1 AAAA
26615039 AAAATCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
AAAATAATAAAAATA
Done.