Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 84 of 320
Found at i:26615195 original size:21 final size:20
Alignment explanation
Indices: 26615171--26615228 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 20
26615161 AGAAAATCGA
26615171 ATATAAAAATAAAATAAGAAT-
1 ATATAAAAA-AAAATAA-AATG
26615192 ATATATAAAAAAAAT-AAATG
1 ATATA-AAAAAAAATAAAATG
26615212 ATATAAAAAAGAAATAA
1 ATATAAAAAA-AAATAA
26615229 CAAAACAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 8 0.24
20 10 0.30
21 11 0.33
22 4 0.12
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.22
Consensus pattern (20 bp):
ATATAAAAAAAAATAAAATG
Found at i:26615215 original size:20 final size:18
Alignment explanation
Indices: 26615171--26615228 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 18
26615161 AGAAAATCGA
26615171 ATATAAAAATAAAATAAGAAT
1 ATATAAAAA-AAAAT-A-AAT
26615192 ATATATAAAAAAAATAAAT
1 ATATA-AAAAAAAATAAAT
26615211 GATATAAAAAAGAAATAA
1 -ATATAAAAAA-AAATAA
26615229 CAAAACAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
19 8 0.24
20 12 0.35
21 10 0.29
22 4 0.12
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.22
Consensus pattern (18 bp):
ATATAAAAAAAAATAAAT
Found at i:26615497 original size:28 final size:30
Alignment explanation
Indices: 26615458--26615521 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
26615448 AAATATGTAT
26615458 ATAATAAAATAACATAATATA-AATA-AAAA
1 ATAA-AAAATAACATAATATAGAATAGAAAA
** *
26615487 ATAAAAAATAATTTAATATAGAATAGTAAA
1 ATAAAAAATAACATAATATAGAATAGAAAA
26615517 ATAAA
1 ATAAA
26615522 TAAAAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 14 0.47
29 8 0.27
30 8 0.27
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (30 bp):
ATAAAAAATAACATAATATAGAATAGAAAA
Found at i:26617284 original size:93 final size:93
Alignment explanation
Indices: 26617171--26617342 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26617161 CGCCCATAAG
* *
26617171 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26617236 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
26617264 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26617329 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
26617343 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26617339 original size:46 final size:46
Alignment explanation
Indices: 26617164--26617339 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
26617154 TGTAACCCGC
* * *
26617164 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
26617210 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
26617260 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26617303 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26617340 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26619908 original size:51 final size:51
Alignment explanation
Indices: 26619853--26619971 Score: 229
Period size: 51 Copynumber: 2.3 Consensus size: 51
26619843 TTGATCCGAC
26619853 CTACTGCAACTTTAGAGGTATAGGACTTGTAACTTGTAGCTTTGATCTGCT
1 CTACTGCAACTTTAGAGGTATAGGACTTGTAACTTGTAGCTTTGATCTGCT
*
26619904 CTACTGCAACTTTAGAGGTATATGACTTGTAACTTGTAGCTTTGATCTGCT
1 CTACTGCAACTTTAGAGGTATAGGACTTGTAACTTGTAGCTTTGATCTGCT
26619955 CTACTGCAACTTTAGAG
1 CTACTGCAACTTTAGAG
26619972 AGATAAGATC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (51 bp):
CTACTGCAACTTTAGAGGTATAGGACTTGTAACTTGTAGCTTTGATCTGCT
Found at i:26620158 original size:44 final size:43
Alignment explanation
Indices: 26620038--26620290 Score: 169
Period size: 44 Copynumber: 5.8 Consensus size: 43
26620028 GAGATTCACT
* *
26620038 ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTA
1 ATCTTAAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-GTTA
*
26620082 A-CTTCAA-CCTGCTCCACTGCAACTTCAGGGAGATAAG-GTTA
1 ATCTT-AAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAGTTA
* * * *
26620123 ATGTCTTAAGTCTGCTCCATTGCAACTTCAAGGAGATAAAACTTATA
1 A--TCTTAAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-GT-TA
* * * * *
26620170 AT-TTCAA-CCTACCCCACTGCAACTTCAGGGAGATGAG-GTTT
1 ATCTT-AAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAGTTA
* * * * * *
26620211 GTGGCTTCAGTTTGCTCCACTGCAACTTTAGGGAGATAAGACTTGT
1 AT--CTTAAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAGTT-A
* * *
26620257 ATCTTCAA-TCTGCTCCAATGCCATTTCAGGGAGA
1 ATCTT-AAGTCTGCTCCACTGCAACTTCAGGGAGA
26620291 AGAGATTTGC
Statistics
Matches: 160, Mismatches: 33, Indels: 32
0.71 0.15 0.14
Matches are distributed among these distances:
41 6 0.04
42 1 0.01
43 35 0.22
44 106 0.66
45 6 0.04
46 3 0.02
47 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
ATCTTAAGTCTGCTCCACTGCAACTTCAGGGAGATAAGAGTTA
Found at i:26620193 original size:88 final size:87
Alignment explanation
Indices: 26620039--26620264 Score: 308
Period size: 88 Copynumber: 2.6 Consensus size: 87
26620029 AGATTCACTA
* *
26620039 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCAA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAACTTCAACCTACCCCACTGCAA
26620104 CTTCAGGGAGATAAGGTTAATG
66 CTTCAGGGAGATAAGGTTAATG
* * * * *
26620126 TCTTAAGTCTGCTCCATTGCAACTTCAAGGAGATAAAACTTATAATTTCAACCTACCCCACTGCA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-TAACTTCAACCTACCCCACTGCA
* **
26620191 ACTTCAGGGAGATGAGGTTTGTG
65 ACTTCAGGGAGATAAGGTTAATG
* * * *
26620214 GCTTCAGTTTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTATCTTCAA
1 TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-TAACTTCAA
26620265 TCTGCTCCAA
Statistics
Matches: 118, Mismatches: 20, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
87 37 0.31
88 81 0.69
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (87 bp):
TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTTAACTTCAACCTACCCCACTGCAA
CTTCAGGGAGATAAGGTTAATG
Found at i:26620285 original size:88 final size:88
Alignment explanation
Indices: 26620193--26620865 Score: 728
Period size: 88 Copynumber: 7.7 Consensus size: 88
26620183 CCACTGCAAC
* * * * * * * * *
26620193 TTCAGGGAGATGAGGTTTGTGGCTTCAGTTTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA
1 TTCAGGGAGAAGAGATTTGTAGCTTCAGTCTACTCCACTGGAACTTTAAGGAGATAAGAATTGTG
* * *
26620258 TCTTCAATCTGCTCCAATGCCAT
66 GCTTCAAGCCGCTCCAATGCCAT
* * * * * *
26620281 TTCAGGGAGAAGAGATTTGCAGCTT-TGACCTACTCCGCTGGAA-TTTCAAGGAGATAAAAATTA
1 TTCAGGGAGAAGAGATTTGTAGCTTCAG-TCTACTCCACTGGAACTTT-AAGGAGATAAGAATTG
*
26620344 TGGCTTCAAGCTGCTCCAATGCCAT
64 TGGCTTCAAGCCGCTCCAATGCCAT
* *
26620369 TTTAGGGAGAAGAGATTTGTAGCTTTTA-TCTACTCCACTGGAA-TTTCAAGGAGATAAGAATTG
1 TTCAGGGAGAAGAGATTTGTAGC-TTCAGTCTACTCCACTGGAACTTT-AAGGAGATAAGAATTG
* * *
26620432 TGGCTTCGAGCCGCTCTAATACCAT
64 TGGCTTCAAGCCGCTCCAATGCCAT
* * ** * * *
26620457 TTTAGGGAGAAGAGATTTGTAGCTTCGGTCTACTCTGCTGGAACTTTAAGGAGATAAGGATTATA
1 TTCAGGGAGAAGAGATTTGTAGCTTCAGTCTACTCCACTGGAACTTTAAGGAGATAAGAATTGTG
26620522 G-TTCGAA-CCGCTCCAATGCCAT
66 GCTTC-AAGCCGCTCCAATGCCAT
** * * *
26620544 TTCAGGGAGAAGAGATTTGTAG-TTTTGATCTACTCCGCTGAAACTTCATA-GAGATAAGAATTG
1 TTCAGGGAGAAGAGATTTGTAGCTTCAG-TCTACTCCACTGGAACTTTA-AGGAGATAAGAATTG
* *
26620607 TGGCTTCGAGTCGCTCCAATGCCAT
64 TGGCTTCAAGCCGCTCCAATGCCAT
* * *
26620632 TTCAGGGAGAAGAGATTTGTAGCTTTAATCTACTCCACTGGAACTTCAAGGAGATAAGAATTGTG
1 TTCAGGGAGAAGAGATTTGTAGCTTCAGTCTACTCCACTGGAACTTTAAGGAGATAAGAATTGTG
*
26620697 GCTTCAAGCCGCTCCAATGTCAT
66 GCTTCAAGCCGCTCCAATGCCAT
*
26620720 TTCAGGGAGAAGAGATTTGTAGCTTC-GATCTACTCCGCTGGAACTTTAAGGAGATAAGAATTGT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAG-TCTACTCCACTGGAACTTTAAGGAGATAAGAATTGT
*
26620784 GGCTTCAAGCCGCTCCAATGTCAT
65 GGCTTCAAGCCGCTCCAATGCCAT
* * * * *
26620808 TTTAGGGAG--GAAATCTGTAGC-T---TCTACTCCGCTGGAACTTGAAGGAGATAAGAATTGT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAGTCTACTCCACTGGAACTTTAAGGAGATAAGAATTGT
26620866 TGATTTCAAC
Statistics
Matches: 507, Mismatches: 64, Indels: 34
0.84 0.11 0.06
Matches are distributed among these distances:
82 35 0.07
85 1 0.00
86 13 0.03
87 75 0.15
88 375 0.74
89 8 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (88 bp):
TTCAGGGAGAAGAGATTTGTAGCTTCAGTCTACTCCACTGGAACTTTAAGGAGATAAGAATTGTG
GCTTCAAGCCGCTCCAATGCCAT
Found at i:26620583 original size:263 final size:264
Alignment explanation
Indices: 26620193--26620816 Score: 853
Period size: 263 Copynumber: 2.4 Consensus size: 264
26620183 CCACTGCAAC
* * * * * * * * * *
26620193 TTCAGGGAGATGAGGTTTGTGGCTTC-AGTTTGCTCCACTGCAACTTTAGGGAGATAAGACTTGT
1 TTCAGGGAGAAGAGATTTGTAGCTTCGA-TCTACTCCGCTGGAACTTTAAGGAGATAAGAATTAT
* * * *
26620257 ATCTTCAATCTGCTCCAATGCCATTTCAGGGAGAAGAGATTTGCAGCTTTGACCTACTCCGCTGG
65 AGCTTCAAGCCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGCAGCTTTGACCTACTCCGCTGA
* *
26620322 AATTTCA-AGGAGATAAAAATTATGGCTTCAAG-CTGCTCCAATGCCATTTTAGGGAGAAGAGAT
130 AACTTCATA-GAGATAAAAATTATGGCTTCAAGTC-GCTCCAATGCCATTTCAGGGAGAAGAGAT
* * * *
26620385 TTGTAGCTTTTATCTACTCCACTGGAATTTCAAGGAGATAAGAATTGTGGCTTCGAGCCGCTCTA
193 TTGTAGCTTTAATCTACTCCACTGGAACTTCAAGGAGATAAGAATTGTGGCTTCAAGCCGCTCCA
26620450 ATACCAT
258 ATACCAT
* * * *
26620457 TTTAGGGAGAAGAGATTTGTAGCTTCGGTCTACTCTGCTGGAACTTTAAGGAGATAAGGATTATA
1 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTTAAGGAGATAAGAATTATA
* * *
26620522 G-TTCGAA-CCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGTTTTGATCTACTCCGCTGA
66 GCTTC-AAGCCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGCAGCTTTGACCTACTCCGCTGA
* * *
26620585 AACTTCATAGAGATAAGAATTGTGGCTTCGAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATTT
130 AACTTCATAGAGATAAAAATTATGGCTTCAAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATTT
26620650 GTAGCTTTAATCTACTCCACTGGAACTTCAAGGAGATAAGAATTGTGGCTTCAAGCCGCTCCAAT
195 GTAGCTTTAATCTACTCCACTGGAACTTCAAGGAGATAAGAATTGTGGCTTCAAGCCGCTCCAAT
**
26620715 GTCAT
260 ACCAT
* *
26620720 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTTAAGGAGATAAGAATTGTG
1 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTTAAGGAGATAAGAATTATA
* *
26620785 GCTTCAAGCCGCTCCAATGTCATTTTAGGGAG
66 GCTTCAAGCCGCTCCAATGCCATTTCAGGGAG
26620817 GAAATCTGTA
Statistics
Matches: 315, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
263 236 0.75
264 79 0.25
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (264 bp):
TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTTAAGGAGATAAGAATTATA
GCTTCAAGCCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGCAGCTTTGACCTACTCCGCTGAA
ACTTCATAGAGATAAAAATTATGGCTTCAAGTCGCTCCAATGCCATTTCAGGGAGAAGAGATTTG
TAGCTTTAATCTACTCCACTGGAACTTCAAGGAGATAAGAATTGTGGCTTCAAGCCGCTCCAATA
CCAT
Found at i:26620745 original size:44 final size:44
Alignment explanation
Indices: 26620193--26620745 Score: 216
Period size: 44 Copynumber: 12.6 Consensus size: 44
26620183 CCACTGCAAC
* * * * * *
26620193 TTCAGGGAGATGAGGTTTGTGGCTTC-AGTTTGCTCCACTGCAACT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAG-CTGCTCCAATGCCA-T
* * *
26620238 TT-AGGGAGATA-AGACTTGTATCTTCAATCTGCTCCAATGCCAT
1 TTCAGGGAGA-AGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
* ** * * ** **
26620281 TTCAGGGAGAAGAGATTTGCAGCTTTGACCTACTCCGCTGGAAT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
* * *
26620325 TTCAAGGAGATAAAAATTATG--GCTTCAAGCTGCTCCAATGCCAT
1 TTCAGGGAGA-AGAGATT-TGTAGCTTCAAGCTGCTCCAATGCCAT
* ** * * * **
26620369 TTTAGGGAGAAGAGATTTGTAGCTTTTATCTACTCCACTGGAAT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
* * * * * * *
26620413 TTCAAGGAGATA-AGAATTGTGGCTTCGAGCCGCTCTAATACCAT
1 TTCAGGGAGA-AGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
* * * *** **
26620457 TTTAGGGAGAAGAGATTTGTAGCTTC-GGTCTACTCTGCTGGAACT
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAG-CTGCTCCAATGCCA-T
* * * *
26620502 TTAAGGAGATAAG-GA-TTATAG-TTCGAA-CCGCTCCAATGCCAT
1 TTCAGG-GAGAAGAGATTTGTAGCTTC-AAGCTGCTCCAATGCCAT
* ** * * ** ** *
26620544 TTCAGGGAGAAGAGATTTGTAGTTTTGATCTACTCCGCTGAAAC
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
** * * *
26620588 TTCATAGAGATA-AGAATTGTGGCTTCGAG-TCGCTCCAATGCCAT
1 TTCAGGGAGA-AGAGATTTGTAGCTTCAAGCT-GCTCCAATGCCAT
* * * * ** *
26620632 TTCAGGGAGAAGAGATTTGTAGCTTTAATCTACTCCACTGGAAC
1 TTCAGGGAGAAGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
* * * * *
26620676 TTCAAGGAGATA-AGAATTGTGGCTTCAAGCCGCTCCAATGTCAT
1 TTCAGGGAGA-AGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
26620720 TTCAGGGAGAAGAGATTTGTAGCTTC
1 TTCAGGGAGAAGAGATTTGTAGCTTC
26620746 GATCTACTCC
Statistics
Matches: 353, Mismatches: 130, Indels: 51
0.66 0.24 0.10
Matches are distributed among these distances:
41 5 0.01
42 10 0.03
43 30 0.08
44 281 0.80
45 20 0.06
46 7 0.02
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (44 bp):
TTCAGGGAGAAGAGATTTGTAGCTTCAAGCTGCTCCAATGCCAT
Found at i:26620797 original size:39 final size:39
Alignment explanation
Indices: 26620669--26620797 Score: 89
Period size: 44 Copynumber: 3.1 Consensus size: 39
26620659 ATCTACTCCA
*
26620669 CTGGAACTTCAAGGAGATAAGAATTGTGGCTTCAAGCCG
1 CTGGAACTTTAAGGAGATAAGAATTGTGGCTTCAAGCCG
** * * * *
26620708 CTCCAATGTCATTTCAGGGAGA-AGAGATTTGTAGCTTCGATCTACTCCG
1 CTGGAA---C-TTT-AAGGAGATA-AGAATTGTGGCTTC-A---A-GCCG
26620757 CTGGAACTTTAAGGAGATAAGAATTGTGGCTTCAAGCCG
1 CTGGAACTTTAAGGAGATAAGAATTGTGGCTTCAAGCCG
26620796 CT
1 CT
26620798 CCAATGTCAT
Statistics
Matches: 65, Mismatches: 13, Indels: 24
0.64 0.13 0.24
Matches are distributed among these distances:
39 9 0.14
40 1 0.02
42 1 0.02
43 4 0.06
44 36 0.55
45 5 0.08
46 1 0.02
48 1 0.02
49 7 0.11
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (39 bp):
CTGGAACTTTAAGGAGATAAGAATTGTGGCTTCAAGCCG
Found at i:26620973 original size:86 final size:85
Alignment explanation
Indices: 26620879--26621389 Score: 313
Period size: 86 Copynumber: 6.0 Consensus size: 85
26620869 TTTCAACCTG
*
26620879 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAAGGAGACA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
26620944 AGATTCGCCGTCTTCGATCTA
66 AGA-TCGCCGTCTTCGATCTA
* * * * ** * ** *
26620965 CTCCACTACTGCTTAGGAAGACAAGAT-CTACAATCTTCAGCCTACTCCACTATTGCTTAGGGAG
1 CTCCACTACTGCTTAGGGAGATAGGATGGT---GGCTTAAATCTACTCCACTACTGCTTAGGGAG
* * ** * ** * *
26621029 ATAGGAT-GGTGGCTTAAATTTT
63 ACAAGATCGCCGTCTTCGATCTA
* * ** * ** * *
26621051 CTCCACTACTGCTTAGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTGAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAGGA-T-GGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGA
* ** *
26621116 CAAGATCTACAATCTTC-AGCCTA
64 CAAGATC-GCCGTCTTCGA-TCTA
* * *
26621139 CTCCACTA-TCGCTTAGGGATATAGGATGGTGGCTTAAATCTGCTCCACTACTGGTTAGGGAGAC
1 CTCCACTACT-GCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGAC
* * *
26621203 AAGATTTGTCGCCTTCGATC-A
65 AAGA-TCGCCGTCTTCGATCTA
* * ** * *
26621224 GCTCCACTACTGCTTAGGGAGATA--A-GATCG-TTCGATCTACTCCACTACTACTTAGGGAGAT
1 -CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGAC
* ** *
26621285 AAGATCTACAATCTTC-AGCCTA
65 AAGATC-GCCGTCTTCGA-TCTA
* * * * * * *
26621307 CTCTACTACTGCTTAAGGAGATAGGATAGTGGTTTAAATCTGCTCCACTACTGCTTAGAGAGAGA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
*
26621372 AGATTTGCCGTCTTCGAT
66 AGA-TCGCCGTCTTCGAT
26621390 ATGTTCCACT
Statistics
Matches: 313, Mismatches: 89, Indels: 46
0.70 0.20 0.10
Matches are distributed among these distances:
81 2 0.01
82 55 0.18
83 4 0.01
84 2 0.01
85 4 0.01
86 181 0.58
87 10 0.03
88 54 0.17
89 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (85 bp):
CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
AGATCGCCGTCTTCGATCTA
Found at i:26620977 original size:44 final size:43
Alignment explanation
Indices: 26620879--26621456 Score: 261
Period size: 44 Copynumber: 13.5 Consensus size: 43
26620869 TTTCAACCTG
* * ** * **
26620879 CTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
*
26620921 CTCCACTACTGCTTAAGGAGACAAGATTCGCCGTCTTCGATCTA
1 CTCCACTACTGCTTAGGGAGACAAGA-TCGCCGTCTTCGATCTA
* * ** *
26620965 CTCCACTACTGCTTAGGAAGACAAGATCTACAATCTTC-AGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATC-GCCGTCTTCGA-TCTA
* * * ** * ** * *
26621009 CTCCACTATTGCTTAGGGAGATAGGAT-GGTGGCTTAAATTTT
1 CTCCACTACTGCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
*
26621051 CTCCACTACTGCTTAGGGAGACAAGATTCGCCGTCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGACAAGA-TCGCCGTCTTCGATCTA
* * ** *
26621095 CTCCACTACTGCTGAGGGAGACAAGATCTACAATCTTC-AGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATC-GCCGTCTTCGA-TCTA
* * * ** * ** *
26621139 CTCCACTA-TCGCTTAGGGATATAGGAT-GGTGGCTTAAATCTG
1 CTCCACTACT-GCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
* * * *
26621181 CTCCACTACTGGTTAGGGAGACAAGATTTGTCGCCTTCGATC-A
1 CTCCACTACTGCTTAGGGAGACAAGA-TCGCCGTCTTCGATCTA
*
26621224 GCTCCACTACTGCTTAGGGAGATAAGAT---CG--TTCGATCTA
1 -CTCCACTACTGCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
* * * ** *
26621263 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTC-AGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATC-GCCGTCTTCGA-TCTA
* * * * * ** ** *
26621307 CTCTACTACTGCTTAAGGAGATAGGATAGTGGT-TTAAATCTG
1 CTCCACTACTGCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
* * * * *
26621349 CTCCACTACTGCTTAGAGAGAGAAGATTTGCCGTCTTCGATATG
1 CTCCACTACTGCTTAGGGAGACAAGA-TCGCCGTCTTCGATCTA
* * * * * * ** *
26621393 TTCCACTGCT-CTTAGAGAGATAATATCTACAATCTTC-AGCCTA
1 CTCCACTACTGCTTAGGGAGACAAGATC-GCCGTCTTCGA-TCTA
26621436 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
26621457 TAGGATGGTG
Statistics
Matches: 399, Mismatches: 108, Indels: 56
0.71 0.19 0.10
Matches are distributed among these distances:
38 33 0.08
39 1 0.00
40 2 0.01
42 102 0.26
43 49 0.12
44 212 0.53
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGACAAGATCGCCGTCTTCGATCTA
Found at i:26621117 original size:130 final size:130
Alignment explanation
Indices: 26620870--26621252 Score: 604
Period size: 130 Copynumber: 2.9 Consensus size: 130
26620860 AATTGTTGAT
* * *
26620870 TTCAACCTGCTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
1 TTCAGCCTACTCCACTATTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
* * *
26620935 AAGGAGACAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGAAGACAAGATCTACAATC
66 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATC
* *
26621000 TTCAGCCTACTCCACTATTGCTTAGGGAGATAGGATGGTGGCTTAAATTTTCTCCACTACTGCTT
1 TTCAGCCTACTCCACTATTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
*
26621065 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTGAGGGAGACAAGATCTACAATC
66 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATC
* * * *
26621130 TTCAGCCTACTCCACTATCGCTTAGGGATATAGGATGGTGGCTTAAATCTGCTCCACTACTGGTT
1 TTCAGCCTACTCCACTATTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
* * * * *
26621195 AGGGAGACAAGATTTGTCGCCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATC
66 AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATC
26621253 GTTCGATCTA
Statistics
Matches: 233, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 233 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (130 bp):
TTCAGCCTACTCCACTATTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTT
AGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATC
Found at i:26621267 original size:38 final size:38
Alignment explanation
Indices: 26621216--26621290 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
26621206 ATTTGTCGCC
*
26621216 TTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCG
1 TTCGATCAGCTCCACTACTACTTAGGGAGATAAGATCG
26621254 TTCGATCTA-CTCCACTACTACTTAGGGAGATAAGATC
1 TTCGATC-AGCTCCACTACTACTTAGGGAGATAAGATC
26621291 TACAATCTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 34 0.97
39 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (38 bp):
TTCGATCAGCTCCACTACTACTTAGGGAGATAAGATCG
Found at i:26621298 original size:168 final size:171
Alignment explanation
Indices: 26621051--26621415 Score: 481
Period size: 168 Copynumber: 2.1 Consensus size: 171
26621041 CTTAAATTTT
* * *
26621051 CTCCACTACTGCTTAGGGAGACAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTGAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATT--CCG-CTTCGATCTACTCCACTACTACTGAGGGAGA
* * *
26621116 CAAGATCTACAATCTTCAGCCTACTCCACTA-TCGCTTAGGGATATAGGATGGTGGCTTAAATCT
63 CAAGATCTACAATCTTCAGCCTACTCCACTACT-GCTTAAGGAGATAGGATAGTGGCTTAAATCT
* * *
26621180 GCTCCACTACTGGTTAGGGAGACAAGATTTGTCGCCTTCGATCA-G
127 GCTCCACTACTGCTTAGAGAGACAAGATTTGCCGCCTTCGAT-ATG
* *
26621225 CTCCACTACTGCTTAGGGAGATAAGA-T-CG-TTCGATCTACTCCACTACTACTTAGGGAGATAA
1 CTCCACTACTGCTTAGGGAGATAAGATTCCGCTTCGATCTACTCCACTACTACTGAGGGAGACAA
* *
26621287 GATCTACAATCTTCAGCCTACTCTACTACTGCTTAAGGAGATAGGATAGTGGTTTAAATCTGCTC
66 GATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAGGATAGTGGCTTAAATCTGCTC
* *
26621352 CACTACTGCTTAGAGAGAGAAGATTTGCCGTCTTCGATATG
131 CACTACTGCTTAGAGAGACAAGATTTGCCGCCTTCGATATG
* * *
26621393 TTCCACTGCT-CTTAGAGAGATAA
1 CTCCACTACTGCTTAGGGAGATAA
26621416 TATCTACAAT
Statistics
Matches: 171, Mismatches: 18, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
167 13 0.08
168 129 0.75
169 1 0.01
170 2 0.01
173 1 0.01
174 25 0.15
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (171 bp):
CTCCACTACTGCTTAGGGAGATAAGATTCCGCTTCGATCTACTCCACTACTACTGAGGGAGACAA
GATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAGGATAGTGGCTTAAATCTGCTC
CACTACTGCTTAGAGAGACAAGATTTGCCGCCTTCGATATG
Found at i:26621313 original size:38 final size:38
Alignment explanation
Indices: 26621227--26621298 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
26621217 TCGATCAGCT
* * * *
26621227 CCACTACTGCTTAGGGAGATAAGATCGTTCGATCTACT
1 CCACTACTACTTAGGGAGATAAGATCGTACAATCTACG
26621265 CCACTACTACTTAGGGAGATAAGATC-TACAATCT
1 CCACTACTACTTAGGGAGATAAGATCGTACAATCT
26621299 TCAGCCTACT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 6 0.19
38 25 0.81
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (38 bp):
CCACTACTACTTAGGGAGATAAGATCGTACAATCTACG
Found at i:26621355 original size:124 final size:126
Alignment explanation
Indices: 26621224--26621506 Score: 367
Period size: 129 Copynumber: 2.2 Consensus size: 126
26621214 CCTTCGATCA
* * * *
26621224 GCTCCACTACTGCTTAGGGAGATAAGA-T-CG-TTCGATCTACTCCACTACTACTTAGGGAGATA
1 GCTCCACTACTGCTTAGAGAGAGAAGATTCCGCTTCGATATACTCCACTACT-CTTAGAGAGATA
* *
26621286 AGATCTACAATCTTCAGCCTACTCTACTACTGCTTAAGGAGATAGGATAGTGGTTTAAATCT
65 AGATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAGGATAGTGGCTTAAATCT
** *
26621348 GCTCCACTACTGCTTAGAGAGAGAAGATTTGCCGTCTTCGATATGTTCCACTGCTCTTAGAGAGA
1 GCTCCACTACTGCTTAGAGAGAGAAGA-TT-CCG-CTTCGATATACTCCACTACTCTTAGAGAGA
* * *
26621413 TAATATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCT
63 TAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAGGATAGTGGCTTAAATCT
* *
26621477 GCTCCACTAATGCTTCAGA-AGACAAGATTC
1 GCTCCACTACTGCTT-AGAGAGAGAAGATTC
26621507 ACTGTCTTCG
Statistics
Matches: 138, Mismatches: 14, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
124 25 0.18
126 1 0.01
127 1 0.01
128 4 0.03
129 89 0.64
130 18 0.13
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (126 bp):
GCTCCACTACTGCTTAGAGAGAGAAGATTCCGCTTCGATATACTCCACTACTCTTAGAGAGATAA
GATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGATAGGATAGTGGCTTAAATCT
Found at i:26621426 original size:129 final size:130
Alignment explanation
Indices: 26621264--26621551 Score: 384
Period size: 129 Copynumber: 2.2 Consensus size: 130
26621254 TTCGATCTAC
* *
26621264 TCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCTACTACTGCTTAAGGAGAT
1 TCCACTACTACTTAGAGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGAT
* * *
26621329 AGGATAGTGGTTTAAATCTGCTCCACTACTGCTT-AGAGAGAGAAGATTTGCCGTCTTCGATATG
66 AGGATAGTGGCTTAAATCTGCTCCACTAATGCTTCAGA-AGACAAGATTTGCCGTCTTCGATATG
26621393 T
130 T
* * *
26621394 TCCACTGCT-CTTAGAGAGATAATATCTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAGAT
1 TCCACTACTACTTAGAGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGAT
* ** * * *
26621458 AGGATGGTGGCTTAAATCTGCTCCACTAATGCTTCAGAAGACAAGATTCACTGTCTTCGATCTGC
66 AGGATAGTGGCTTAAATCTGCTCCACTAATGCTTCAGAAGACAAGATTTGCCGTCTTCGATATGT
* *
26621523 TCCATTGCTACCTTATG-GAGATAAGATCT
1 TCCACTACTA-CTTA-GAGAGATAAGATCT
26621552 GTGAGTTCAC
Statistics
Matches: 138, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
129 111 0.80
130 11 0.08
131 15 0.11
132 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (130 bp):
TCCACTACTACTTAGAGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAAGGAGAT
AGGATAGTGGCTTAAATCTGCTCCACTAATGCTTCAGAAGACAAGATTTGCCGTCTTCGATATGT
Found at i:26628679 original size:13 final size:12
Alignment explanation
Indices: 26628661--26628742 Score: 55
Period size: 13 Copynumber: 6.8 Consensus size: 12
26628651 AAATATGTAT
26628661 ATAATAAAATAA
1 ATAATAAAATAA
26628673 CATAATATAAATAA
1 -ATAATA-AAATAA
*
26628687 AAAAT-AAA-AA
1 ATAATAAAATAA
*
26628697 ATAATTTAATATAGA
1 ATAA--TAAAATA-A
*
26628712 ATAGTAAAATAA
1 ATAATAAAATAA
*
26628724 ATAA-CAAATAA
1 ATAATAAAATAA
26628735 ATAA-AAAA
1 ATAATAAAA
26628743 GGTTAAAGTT
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
10 5 0.09
11 16 0.29
12 5 0.09
13 18 0.33
14 7 0.13
15 4 0.07
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (12 bp):
ATAATAAAATAA
Found at i:26628700 original size:28 final size:30
Alignment explanation
Indices: 26628661--26628724 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
26628651 AAATATGTAT
26628661 ATAATAAAATAACATAATATA-AATA-AAAA
1 ATAA-AAAATAACATAATATAGAATAGAAAA
** *
26628690 ATAAAAAATAATTTAATATAGAATAGTAAA
1 ATAAAAAATAACATAATATAGAATAGAAAA
26628720 ATAAA
1 ATAAA
26628725 TAACAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 14 0.47
29 8 0.27
30 8 0.27
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (30 bp):
ATAAAAAATAACATAATATAGAATAGAAAA
Found at i:26629740 original size:22 final size:21
Alignment explanation
Indices: 26629715--26629762 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
26629705 GTTCAATCAT
*
26629715 TGTTTTGTATTGTTTCTGCCTC
1 TGTTTTGTATGGTTTC-GCCTC
* *
26629737 TGTTCTGTATGGTTTCGCTTC
1 TGTTTTGTATGGTTTCGCCTC
26629758 TGTTT
1 TGTTT
26629763 CGCCTCTGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.04, C:0.17, G:0.21, T:0.58
Consensus pattern (21 bp):
TGTTTTGTATGGTTTCGCCTC
Found at i:26630371 original size:7 final size:7
Alignment explanation
Indices: 26630359--26630387 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
26630349 TCACATCTAA
26630359 TATTATT
1 TATTATT
26630366 TATTATT
1 TATTATT
26630373 TATTATT
1 TATTATT
26630380 TATTATT
1 TATTATT
26630387 T
1 T
26630388 TATAAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TATTATT
Found at i:26630663 original size:16 final size:17
Alignment explanation
Indices: 26630624--26630667 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
26630614 TTAAAATAAG
*
26630624 ATTTATTTTTTAATTTA
1 ATTTATTATTTAATTTA
*
26630641 ATGTATTATTT-ATTTA
1 ATTTATTATTTAATTTA
*
26630657 TTTTATTATTT
1 ATTTATTATTT
26630668 TTCAGATGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
ATTTATTATTTAATTTA
Found at i:26637907 original size:49 final size:49
Alignment explanation
Indices: 26637854--26638028 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 49
26637844 CTGGTACGCA
26637854 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * * *
26637903 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
*
26637954 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
*
26638003 TAGTAGCCTGCACTTTGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26638029 CGTGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 63 0.58
50 6 0.06
51 39 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:26637960 original size:51 final size:49
Alignment explanation
Indices: 26637841--26638035 Score: 246
Period size: 49 Copynumber: 3.9 Consensus size: 49
26637831 TAGACAAGGC
* * *
26637841 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
26637890 TATCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
26637941 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
26637990 TATCCAGTACACGTAGTAGCCTGCACTTTGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
26638036 TCACAATAGA
Statistics
Matches: 123, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 78 0.63
50 6 0.05
51 39 0.32
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:26638023 original size:100 final size:100
Alignment explanation
Indices: 26637841--26638033 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
26637831 TAGACAAGGC
* *
26637841 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
26637906 TAGCCTACACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTACACTTAGTACTACACACGTGATCGAAGT
26637941 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
* *
26638006 TAGCCTGCACTTTGTACTACACACGTGA
66 TAGCCTACACTTAGTACTACACACGTGA
26638034 CCTCACAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
TAGCCTACACTTAGTACTACACACGTGATCGAAGT
Found at i:26638312 original size:27 final size:27
Alignment explanation
Indices: 26638282--26638335 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26638272 TCATACAACC
* *
26638282 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
26638309 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
26638336 TCACATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:26644204 original size:14 final size:15
Alignment explanation
Indices: 26644168--26644204 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
26644158 TACAATCATT
*
26644168 TTATTATTATATTGA
1 TTATTATTTTATTGA
26644183 -TATTATTTTATT-A
1 TTATTATTTTATTGA
26644196 TTATTATTT
1 TTATTATTT
26644205 AGATATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (15 bp):
TTATTATTTTATTGA
Found at i:26644337 original size:27 final size:28
Alignment explanation
Indices: 26644294--26644347 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
26644284 GTTACGAAAT
* *
26644294 ATTTATTTTAATATTTTTAATATATTTG
1 ATTTATTATAATATTTTAAATATATTTG
*
26644322 ATTTATTAT-ATATTTTAAATTTATTT
1 ATTTATTATAATATTTTAAATATATTT
26644348 TTATATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (28 bp):
ATTTATTATAATATTTTAAATATATTTG
Found at i:26644343 original size:18 final size:17
Alignment explanation
Indices: 26644297--26644346 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
26644287 ACGAAATATT
26644297 TATTTTAATATTT-TTAA
1 TATTTTAA-ATTTATTAA
*
26644314 TATATTT-GATTTATTATA
1 TAT-TTTAAATTTATTA-A
26644332 TATTTTAAATTTATT
1 TATTTTAAATTTATT
26644347 TTTATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
16 4 0.15
17 9 0.33
18 14 0.52
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTTTAAATTTATTAA
Found at i:26647560 original size:17 final size:17
Alignment explanation
Indices: 26647538--26647575 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
26647528 ACCTTTTTTC
26647538 TTTACAACGAAAAGAAA
1 TTTACAACGAAAAGAAA
*
26647555 TTTACAATGAAAAGAAA
1 TTTACAACGAAAAGAAA
26647572 TTTA
1 TTTA
26647576 AGTTCCTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (17 bp):
TTTACAACGAAAAGAAA
Found at i:26650720 original size:96 final size:96
Alignment explanation
Indices: 26650550--26650870 Score: 340
Period size: 96 Copynumber: 3.3 Consensus size: 96
26650540 GATATGTGTC
* * * * *
26650550 CCAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCA-CGATATGAGAGCCAGTGTAAGACCATG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATTGATATGAGAGCTAGTGTAAGACCATG
* * * * ***
26650614 TTTGGAACATGGCATCAGG-GATATTGTGAAAG
65 TCTGGGACATGGCATC-GGCCACAACATGAAAG
* * *
26650646 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAATACCATGT
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGT
*
26650711 CTGGGACATGGCATCGGCCACAACATGAGAG
66 CTGGGACATGGCATCGGCCACAACATGAAAG
* * * * * * *
26650742 CCAATGTAAGACCATGTCTGGGATATGACATCGGTATTGAGACGAGAGCTAATGTAAGACCATGT
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGT
* * * *
26650807 CTGGGACATAGCATCGGCCTCGACATGTAAG
66 CTGGGACATGGCATCGGCCACAACATGAAAG
* * *
26650838 CCAATGTAAGACCATGTTTGGAACATGGCATCG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
26650871 ACAATTCACT
Statistics
Matches: 188, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
95 5 0.03
96 183 0.97
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCGGCCACAACATGAAAG
Found at i:26650799 original size:144 final size:143
Alignment explanation
Indices: 26650539--26650870 Score: 382
Period size: 144 Copynumber: 2.3 Consensus size: 143
26650529 GACATTTGGG
* * * * * *
26650539 TGATATGTGTC-CCAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCACGATATGAGAGCCAGT
1 TGATATGTG-CGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAAT
* * * *
26650603 GTAAGACCATGTTTGGAACATGGCATCAGGGATATTGTGAAAGCCAGTGTAAGACCATGTCTGGG
65 GTAAGACCATGTCTGGAACATGACATCA-GGATATTGAGAAAGCCAATGTAAGACCATGTCTGGG
*
26650668 ACATGGCATCGGCAT
129 ACATAGCATCGGCAT
* *
26650683 TGATATGTGCGCTAGTGTAATACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATG
1 TGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATG
* * *
26650748 TAAGACCATGTCTGGGATATGACATC-GG-TATTGAGACGAGAGCTAATGTAAGACCATGTCTGG
66 TAAGACCATGTCTGGAACATGACATCAGGATATTGAGA--A-AGCCAATGTAAGACCATGTCTGG
*
26650811 GACATAGCATCGGCCT
128 GACATAGCATCGGCAT
* * ** * * *
26650827 CGACATGTAAGCCAATGTAAGACCATGTTTGGAACATGGCATCG
1 TGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
26650871 ACAATTCACT
Statistics
Matches: 158, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
141 7 0.04
142 2 0.01
143 2 0.01
144 147 0.93
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (143 bp):
TGATATGTGCGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATG
TAAGACCATGTCTGGAACATGACATCAGGATATTGAGAAAGCCAATGTAAGACCATGTCTGGGAC
ATAGCATCGGCAT
Found at i:26650870 original size:48 final size:48
Alignment explanation
Indices: 26650554--26650870 Score: 280
Period size: 48 Copynumber: 6.6 Consensus size: 48
26650544 TGTGTCCCAG
* * * * *
26650554 TGTAAGACCATGTCTAGGACATGGCGTCAGCCACGATATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCCAA
* * ** * * *
26650602 TGTAAGACCATGTTTGGAACATGGCATCAGGGAT--ATTGTGAAAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATC-GGCCTCGA-TATGAGAGCCAA
* * * * * *
26650650 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCCAA
* * * *
26650698 TGTAATACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCCAA
* * ** * * * *
26650746 TGTAAGACCATGTCTGGGATATGACATCGGTATTGAGACGAGAGCTAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCCAA
* *
26650794 TGTAAGACCATGTCTGGGACATAGCATCGGCCTCGACATGTA-AGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATG-AGAGCCAA
* *
26650842 TGTAAGACCATGTTTGGAACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
26650871 ACAATTCACT
Statistics
Matches: 213, Mismatches: 51, Indels: 10
0.78 0.19 0.04
Matches are distributed among these distances:
47 5 0.02
48 205 0.96
49 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGAGAGCCAA
Found at i:26660449 original size:39 final size:40
Alignment explanation
Indices: 26660298--26660467 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
26660288 GGACTAAGAT
* * *
26660298 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
26660338 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* ** *
26660378 CTGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
26660418 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
26660457 CCGAAGGCATT
1 CCGAAGGCATT
26660468 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26684626 original size:39 final size:40
Alignment explanation
Indices: 26684475--26684644 Score: 198
Period size: 40 Copynumber: 4.3 Consensus size: 40
26684465 GGACTAAGAT
* * *
26684475 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
26684515 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* ** *
26684555 CTGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
26684595 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
26684634 CCGAAGGCATT
1 CCGAAGGCATT
26684645 TGAACGAGGA
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
39 32 0.29
40 78 0.71
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26691896 original size:39 final size:40
Alignment explanation
Indices: 26691745--26691914 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
26691735 GGACTAAGAT
* * *
26691745 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
26691785 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
26691825 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
26691865 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
26691904 CCGAAGGCATT
1 CCGAAGGCATT
26691915 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26695043 original size:12 final size:12
Alignment explanation
Indices: 26695026--26695055 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26695016 TAGAGATCTA
26695026 AGGTTTACTTCG
1 AGGTTTACTTCG
*
26695038 AGGTTTACTTTG
1 AGGTTTACTTCG
26695050 AGGTTT
1 AGGTTT
26695056 TGGAAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.10, G:0.27, T:0.47
Consensus pattern (12 bp):
AGGTTTACTTCG
Found at i:26697190 original size:48 final size:48
Alignment explanation
Indices: 26697131--26697449 Score: 297
Period size: 48 Copynumber: 6.6 Consensus size: 48
26697121 TATGTGTGCT
* *
26697131 AGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * * * *
26697179 AGTGTAAGACCATGTTTGGAACATGGCATCGGCGA-TATTGTGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCC
* * * *
26697227 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* *
26697275 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
* * * * * * **
26697323 AATGTAAGACCATGTCTGGGACATGACATCGG-TATTGAGATAAGAGAT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCC
* * * * *
26697371 AATGTAAGACCCTGTCTGGGACATGGCATCAGCCTCGACATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATG-AGAGCC
* *
26697419 AATGTAAGACCATGAT-TGGAACATGGCATCG
1 AGTGTAAGACCATG-TCTGGGACATGGCATCG
26697450 AAAATTCACC
Statistics
Matches: 218, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
47 3 0.01
48 210 0.96
49 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCC
Found at i:26697299 original size:96 final size:96
Alignment explanation
Indices: 26697131--26697449 Score: 354
Period size: 96 Copynumber: 3.3 Consensus size: 96
26697121 TATGTGTGCT
* * * * *
26697131 AGTGTAAGACCATGTCTGGGACATGGCGTCGACCA-CGATATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGATATGAGAGCTAGTGTAAGACCATGTC
* * * ***
26697195 TGGAACATGGCATCGGCGATATTGTGAAAGCC
65 TGGGACATGGCATCGGCCACAACATGAAAGCC
* *
26697227 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
*
26697292 GGGACATGGCATCGGCCACAACATGAGAGCC
66 GGGACATGGCATCGGCCACAACATGAAAGCC
* * * * * * * *
26697323 AATGTAAGACCATGTCTGGGACATGACATCGGTATTGAGATAAGAGATAATGTAAGACCCTGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
* * * *
26697388 GGGACATGGCATCAGCCTCGACATGTAAGCC
66 GGGACATGGCATCGGCCACAACATGAAAGCC
* *
26697419 AATGTAAGACCATGAT-TGGAACATGGCATCG
1 AGTGTAAGACCATG-TCTGGGACATGGCATCG
26697450 AAAATTCACC
Statistics
Matches: 190, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 2 0.01
96 187 0.98
97 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCCACAACATGAAAGCC
Found at i:26697378 original size:144 final size:144
Alignment explanation
Indices: 26697118--26697450 Score: 395
Period size: 144 Copynumber: 2.3 Consensus size: 144
26697108 GACATTTTGG
* * * * *
26697118 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGATATGAGAGCCAGTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAATG
* * * * *
26697183 TAAGACCATGTTTGGAACATGGCATCGGCGATATTGTGAAAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCTGGAACATGACATCGGCGATATTGAGAAAGACAATGTAAGACCATGTCTGGGA
*
26697248 CATGGCATCGGCAT
131 CATGGCATCAGCAT
* *
26697262 TGATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAATG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAATG
* * *
26697327 TAAGACCATGTCTGGGACATGACATC-G-G-TATTGAGATAAGAGATAATGTAAGACCCTGTCTG
66 TAAGACCATGTCTGGAACATGACATCGGCGATATTGAG--AA-AGACAATGTAAGACCATGTCTG
*
26697389 GGACATGGCATCAGCCT
128 GGACATGGCATCAGCAT
* * * * * *
26697406 CGACATGTAAGCCAATGTAAGACCATGAT-TGGAACATGGCATCGA
1 TGATATGTGAGCTAGTGTAAGACCATG-TCTGGGACATGGCATCGA
26697451 AAATTCACCC
Statistics
Matches: 161, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
141 6 0.04
142 1 0.01
143 3 0.02
144 150 0.93
145 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (144 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACAACATGAGAGCCAATG
TAAGACCATGTCTGGAACATGACATCGGCGATATTGAGAAAGACAATGTAAGACCATGTCTGGGA
CATGGCATCAGCAT
Found at i:26697495 original size:10 final size:10
Alignment explanation
Indices: 26697480--26697505 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26697470 AAGCTTGTCA
26697480 GATATAGAAT
1 GATATAGAAT
26697490 GATATAGAAT
1 GATATAGAAT
26697500 GATATA
1 GATATA
26697506 ATCATGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (10 bp):
GATATAGAAT
Found at i:26709885 original size:11 final size:12
Alignment explanation
Indices: 26709871--26709899 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
26709861 AAACACAACC
26709871 TAAAAACAAAA-
1 TAAAAACAAAAT
26709882 TAAAAACAAAAT
1 TAAAAACAAAAT
26709894 TAAAAA
1 TAAAAA
26709900 AAGTTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (12 bp):
TAAAAACAAAAT
Found at i:26713144 original size:48 final size:48
Alignment explanation
Indices: 26713074--26713169 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
26713064 TTACTTGTTC
26713074 GTTACATATTATTCACGCAGTTATTCTCATAATTTCCATTGCATTTTT
1 GTTACATATTATTCACGCAGTTATTCTCATAATTTCCATTGCATTTTT
* * *
26713122 GTTATATATTATTCACGTAGTTATTCTTATAATTTCCATTGCATTTTT
1 GTTACATATTATTCACGCAGTTATTCTCATAATTTCCATTGCATTTTT
26713170 ACTCTTGCTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.51
Consensus pattern (48 bp):
GTTACATATTATTCACGCAGTTATTCTCATAATTTCCATTGCATTTTT
Found at i:26714183 original size:29 final size:29
Alignment explanation
Indices: 26714143--26714201 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
26714133 ATGGATTTCA
26714143 ACACTGGACTTTGAATGAAGATGTTTTAC
1 ACACTGGACTTTGAATGAAGATGTTTTAC
26714172 ACACTGGACTTTGAATGAAGATGTTTTAC
1 ACACTGGACTTTGAATGAAGATGTTTTAC
26714201 A
1 A
26714202 ATAGGTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (29 bp):
ACACTGGACTTTGAATGAAGATGTTTTAC
Found at i:26716796 original size:28 final size:28
Alignment explanation
Indices: 26716744--26716808 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
26716734 ACATCTGATA
* * *
26716744 CTGATTCTG-TATTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAAGCCCAC
26716771 CTGATTCTGTTAATGGGCTAAAGCCCAC
1 CTGATTCTGTTAATGGGCTAAAGCCCAC
* *
26716799 CCGATACTGT
1 CTGATTCTGT
26716809 GTCTCTGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAAGCCCAC
Found at i:26718440 original size:10 final size:11
Alignment explanation
Indices: 26718412--26718444 Score: 52
Period size: 10 Copynumber: 3.2 Consensus size: 11
26718402 AGGATCTATT
26718412 TGTAAAAAGT-
1 TGTAAAAAGTG
26718422 TGTAAAAAGTG
1 TGTAAAAAGTG
26718433 TGT-AAAAGTG
1 TGTAAAAAGTG
26718443 TG
1 TG
26718445 ATCAAATGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 19 0.86
11 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30
Consensus pattern (11 bp):
TGTAAAAAGTG
Found at i:26719004 original size:42 final size:42
Alignment explanation
Indices: 26718939--26719094 Score: 183
Period size: 42 Copynumber: 3.7 Consensus size: 42
26718929 ACTGAGATTA
* *
26718939 CATGTAAGACCATATCTGAGATATGGCAAT-GATATGAGGCTT
1 CATGTAAGACCATACCTGGGATATGGC-ATCGATATGAGGCTT
*
26718981 CATGTAAGACCATACCTGGGATATGGCATCGATATGAGACTT
1 CATGTAAGACCATACCTGGGATATGGCATCGATATGAGGCTT
* * * *
26719023 -AGTGCAAGACCATACCTGGGTTATTGGCATCGATACGA-GATT
1 CA-TGTAAGACCATACCTGGGATA-TGGCATCGATATGAGGCTT
*
26719065 ACATGTAAGACCATATCTGGGATATGGCAT
1 -CATGTAAGACCATACCTGGGATATGGCAT
26719095 TGGTACGGTA
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
41 3 0.03
42 63 0.64
43 31 0.32
44 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (42 bp):
CATGTAAGACCATACCTGGGATATGGCATCGATATGAGGCTT
Found at i:26721941 original size:31 final size:31
Alignment explanation
Indices: 26721890--26721950 Score: 72
Period size: 31 Copynumber: 1.9 Consensus size: 31
26721880 TGAACGTTAG
26721890 TTCTTCTTTCTCATTATTTTC-CTTTTTCCCT
1 TTCTTCTTTCT-ATTATTTTCTCTTTTTCCCT
26721921 TTCTTCTTTCT-TTACTTTTTCTTCTTTTTC
1 TTCTTCTTTCTATTA--TTTTC-TCTTTTTC
26721951 GTTTTTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
29 3 0.12
31 16 0.62
33 7 0.27
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (31 bp):
TTCTTCTTTCTATTATTTTCTCTTTTTCCCT
Found at i:26721947 original size:25 final size:25
Alignment explanation
Indices: 26721890--26721972 Score: 68
Period size: 25 Copynumber: 3.4 Consensus size: 25
26721880 TGAACGTTAG
*
26721890 TTCTTCTTTC-TCATTATTTTCCTTT
1 TTCTTCTTTCTTCATT-TTTTACTTT
*
26721915 TTC-CCTTTCTTC-TTTCTTTACTTT
1 TTCTTCTTTCTTCATTT-TTTACTTT
*
26721939 TTCTTCTTT-TTCGTTTTTTTAGC-TT
1 TTCTTCTTTCTTC-ATTTTTTA-CTTT
26721964 TTCTTCTTT
1 TTCTTCTTT
26721973 AATTGTTGTA
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
23 1 0.02
24 20 0.41
25 24 0.49
26 4 0.08
ACGTcount: A:0.05, C:0.23, G:0.02, T:0.70
Consensus pattern (25 bp):
TTCTTCTTTCTTCATTTTTTACTTT
Found at i:26735327 original size:12 final size:12
Alignment explanation
Indices: 26735306--26735362 Score: 53
Period size: 12 Copynumber: 4.5 Consensus size: 12
26735296 TAATAATATT
26735306 GAAAAA-AAAAA
1 GAAAAAGAAAAA
26735317 GAAAAAGAAAAA
1 GAAAAAGAAAAA
*
26735329 GAGAAAGAAAAGA
1 GAAAAAGAAAA-A
*
26735342 GAGAAAAAAAGAAA
1 GA-AAAAGAA-AAA
26735356 GGAAAAA
1 -GAAAAA
26735363 ATAACTTGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.16
12 15 0.39
13 3 0.08
14 10 0.26
15 4 0.11
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
GAAAAAGAAAAA
Found at i:26735363 original size:13 final size:11
Alignment explanation
Indices: 26735306--26735355 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
26735296 TAATAATATT
26735306 GAAAAAAAAAA
1 GAAAAAAAAAA
26735317 GAAAAAGAAAAA
1 GAAAAA-AAAAA
* *
26735329 GAGAAAGAAAA
1 GAAAAAAAAAA
*
26735340 GAGAGAAAAAAA
1 GA-AAAAAAAAA
26735352 GAAA
1 GAAA
26735356 GGAAAAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
11 13 0.42
12 18 0.58
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:26737831 original size:21 final size:21
Alignment explanation
Indices: 26737793--26737832 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26737783 ATGCTTAAAT
*
26737793 CAAAACTAATTCTTTTTCTTA
1 CAAAACTAATTCTATTTCTTA
26737814 CAAAACTAATT-TCATTTCT
1 CAAAACTAATTCT-ATTTCT
26737833 CATTCAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45
Consensus pattern (21 bp):
CAAAACTAATTCTATTTCTTA
Found at i:26742844 original size:41 final size:41
Alignment explanation
Indices: 26742774--26742927 Score: 168
Period size: 41 Copynumber: 3.8 Consensus size: 41
26742764 AGACTCGAAT
* * * *
26742774 TCTCCCACACTAAGCGCCAAAACATAGCCGAAGCTATTTTAA
1 TCTCGCACACTAAGTGCC-ATACATAGCCGAAGCTATTTCAA
* * **
26742816 TCTCGCACACTAAGGGCCTTACATAGCCGAAGCTATTTCGG
1 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATTTCAA
* * *
26742857 TCTCACACACTAAGTGCCATATATAGCCGAAGCTATTCTGAA
1 TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATT-TCAA
*
26742899 --TCGCACACAAAGTGCCATACATAGCCGAA
1 TCTCGCACACTAAGTGCCATACATAGCCGAA
26742928 TCGTCATCAA
Statistics
Matches: 94, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 26 0.28
41 51 0.54
42 17 0.18
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (41 bp):
TCTCGCACACTAAGTGCCATACATAGCCGAAGCTATTTCAA
Found at i:26742920 original size:81 final size:82
Alignment explanation
Indices: 26742774--26742927 Score: 204
Period size: 81 Copynumber: 1.9 Consensus size: 82
26742764 AGACTCGAAT
* * * *
26742774 TCTCCCACACTAAGCGCCAAAACATAGCCGAAGCTATTTTAATCTCGCACACTAAGGGCCTTACA
1 TCTCACACACTAAGCGCCAAAACATAGCCGAAGCTATTTGAA-CTCGCACACAAAGGGCCATACA
26742839 TAGCCGAAGCTATTTCGG
65 TAGCCGAAGCTATTTCGG
* * * *
26742857 TCTCACACACTAAGTGCC-ATATATAGCCGAAGCTATTCTGAA-TCGCACACAAAGTGCCATACA
1 TCTCACACACTAAGCGCCAAAACATAGCCGAAGCTATT-TGAACTCGCACACAAAGGGCCATACA
26742920 TAGCCGAA
65 TAGCCGAA
26742928 TCGTCATCAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 26 0.42
82 17 0.27
83 19 0.31
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (82 bp):
TCTCACACACTAAGCGCCAAAACATAGCCGAAGCTATTTGAACTCGCACACAAAGGGCCATACAT
AGCCGAAGCTATTTCGG
Found at i:26761028 original size:33 final size:33
Alignment explanation
Indices: 26760986--26761048 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
26760976 GAAGTGAGCC
*
26760986 GACTTCGTCAGTCTATCAATCACGACCCAAGCT
1 GACTTCGTCAGTCTATCAATCACAACCCAAGCT
*
26761019 GACTTCGTCAGTTTATCAATCACAACCCAA
1 GACTTCGTCAGTCTATCAATCACAACCCAA
26761049 ACAACATCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (33 bp):
GACTTCGTCAGTCTATCAATCACAACCCAAGCT
Found at i:26765143 original size:28 final size:29
Alignment explanation
Indices: 26765090--26765144 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
26765080 ACAGGGGTTT
*
26765090 TCACACAGCCGAGCACACGCCCGTGTCCC
1 TCACACAGCCGAGCACACGCCAGTGTCCC
* *
26765119 TCACTCAGCCTAG-ACACGCCAGTGTC
1 TCACACAGCCGAGCACACGCCAGTGTC
26765145 ATAGCCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.22, C:0.44, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACAGCCGAGCACACGCCAGTGTCCC
Found at i:26770502 original size:16 final size:16
Alignment explanation
Indices: 26770483--26770541 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 16
26770473 ATGTGAATTG
26770483 AAAAAATATTTAAAAT
1 AAAAAATATTTAAAAT
* *
26770499 AAAAAATCA-ATAATAT
1 AAAAAAT-ATTTAAAAT
*
26770515 AAAAAA-ATTATCAAAT
1 AAAAAATATT-TAAAAT
26770531 AAAAAATATTT
1 AAAAAATATTT
26770542 TAATAGACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
14 1 0.03
16 29 0.85
17 4 0.12
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAAATATTTAAAAT
Found at i:26772832 original size:24 final size:25
Alignment explanation
Indices: 26772791--26772866 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 25
26772781 GACATTGTGC
* *
26772791 TAAGTGAAATCAA-ACCATCGCATT-
1 TAAGTGAAAT-AAGTCCATGGCATTA
26772815 TAAGTGAAATAAGTCCATGGCAATGTA
1 TAAGTGAAATAAGTCCATGGC-AT-TA
26772842 CTAAGTGAAATAAGTCCATGGCATT
1 -TAAGTGAAATAAGTCCATGGCATT
26772867 GTGCTAAGTG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
23 2 0.04
24 16 0.36
25 2 0.04
26 2 0.04
27 2 0.04
28 21 0.47
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (25 bp):
TAAGTGAAATAAGTCCATGGCATTA
Found at i:26772855 original size:28 final size:28
Alignment explanation
Indices: 26772815--26772877 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
26772805 CCATCGCATT
26772815 TAAGTGAAATAAGTCCATGGCAATGTAC
1 TAAGTGAAATAAGTCCATGGCAATGTAC
* *
26772843 TAAGTGAAATAAGTCCATGGCATTGTGC
1 TAAGTGAAATAAGTCCATGGCAATGTAC
26772871 TAAGTGA
1 TAAGTGA
26772878 GAAATTTCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.27
Consensus pattern (28 bp):
TAAGTGAAATAAGTCCATGGCAATGTAC
Found at i:26772956 original size:51 final size:51
Alignment explanation
Indices: 26772901--26773048 Score: 235
Period size: 51 Copynumber: 2.9 Consensus size: 51
26772891 TGAACCTTAG
*
26772901 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTTT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
26772952 GAATATAATAGCTTTGGACACAAGTGTGGTACTAGGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
26773003 GAATAAAATAGCTTTGG-CTACAAGGGTGGTGCTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
26773049 CGTGTATCCG
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 1 0.01
51 88 0.99
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:26775626 original size:9 final size:9
Alignment explanation
Indices: 26775612--26775636 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26775602 GAAAAAGAAT
26775612 AGGAGAAAG
1 AGGAGAAAG
26775621 AGGAGAAAG
1 AGGAGAAAG
26775630 AGGAGAA
1 AGGAGAA
26775637 GAAGAAGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (9 bp):
AGGAGAAAG
Found at i:26776363 original size:11 final size:11
Alignment explanation
Indices: 26776315--26776364 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
26776305 AAAGAATATA
26776315 AAAAGAGAAAG
1 AAAAGAGAAAG
* *
26776326 GAAAG-GAACG
1 AAAAGAGAAAG
26776336 AAACAGAG-AAG
1 AAA-AGAGAAAG
26776347 AAAAAGAGAAAG
1 -AAAAGAGAAAG
26776359 AAAAGA
1 AAAAGA
26776365 AGGAGAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
10 6 0.19
11 18 0.58
12 7 0.23
ACGTcount: A:0.68, C:0.04, G:0.28, T:0.00
Consensus pattern (11 bp):
AAAAGAGAAAG
Found at i:26780243 original size:80 final size:80
Alignment explanation
Indices: 26780061--26780283 Score: 249
Period size: 80 Copynumber: 2.8 Consensus size: 80
26780051 TCCTCGTTCA
* * * * * *
26780061 AATGCCTTCGGGACATAGCCCGG-T-TTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGATATATA-CAACTCGCACAATGCCTTCGGGACTTAACCCGGA
26780124 TTTAACAACTCGCACG
65 TTTAACAACTCGCACG
*
26780140 AATGCCTTCGGGACTTAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGATATATACAACTCGCAC-AATGCCTTCGGGACTTAACCCGGA
*
26780204 TTTAATAACTCGCACG
65 TTTAACAACTCGCACG
** * * * *
26780220 AATGCCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGA-CTTAACCCGGATATATACAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
26780283 A
64 A
26780284 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
79 32 0.26
80 85 0.69
81 7 0.06
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATATATACAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAACAACTCGCACG
Found at i:26780244 original size:40 final size:40
Alignment explanation
Indices: 26780061--26780230 Score: 261
Period size: 40 Copynumber: 4.3 Consensus size: 40
26780051 TCCTCGTTCA
* * * ** *
26780061 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
26780100 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
26780140 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
26780180 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
26780220 AATGCCTTCGG
1 AATGCCTTCGG
26780231 ATCTTAGTCC
Statistics
Matches: 123, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 34 0.28
40 89 0.72
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:26780276 original size:120 final size:119
Alignment explanation
Indices: 26780061--26780283 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
26780051 TCCTCGTTCA
* * * *
26780061 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATA
* *
26780126 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * **
26780180 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACAC-AATGCCTTCGGGA-CATAACCCGGA
* *
26780244 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
26780284 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:26782143 original size:39 final size:39
Alignment explanation
Indices: 26782086--26782284 Score: 326
Period size: 39 Copynumber: 5.1 Consensus size: 39
26782076 ATTCAAGACA
* *
26782086 CTGGAGATGTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
**
26782125 CTGGAAATGTATTTGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
26782164 CTGGAAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
26782203 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
26782242 TTGGAAATGTATCCGGGCTAAAGTCCCGCAGACTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
26782281 CTGG
1 CTGG
26782285 TAATATAATT
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 148 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:26792353 original size:12 final size:12
Alignment explanation
Indices: 26792334--26792372 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
26792324 TCAAGGTTTT
26792334 TAGACACGGGC-
1 TAGACACGGGCA
26792345 TAGGACACGGGCCA
1 TA-GACACGGG-CA
26792359 TAGACACGGGCA
1 TAGACACGGGCA
26792371 TA
1 TA
26792373 TGTCAGTGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.08
12 12 0.48
13 9 0.36
14 2 0.08
ACGTcount: A:0.31, C:0.26, G:0.33, T:0.10
Consensus pattern (12 bp):
TAGACACGGGCA
Found at i:26805322 original size:20 final size:21
Alignment explanation
Indices: 26805299--26805346 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
26805289 TATAATTATT
*
26805299 TAATTAATAAATATCT-TTTA
1 TAATTAATAAATATCTATTAA
26805319 TAATTAATAAATATCTATTAA
1 TAATTAATAAATATCTATTAA
26805340 TAATTAA
1 TAATTAA
26805347 ATACATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATTAATAAATATCTATTAA
Found at i:26812517 original size:30 final size:29
Alignment explanation
Indices: 26812483--26812539 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
26812473 ATAGTATCTT
26812483 ATCTTGGATTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
26812513 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
26812540 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:26822127 original size:49 final size:49
Alignment explanation
Indices: 26822065--26822193 Score: 188
Period size: 49 Copynumber: 2.6 Consensus size: 49
26822055 CGCGATATAC
* * *
26822065 AAGCTAGTGTAAGACCTGTCTGGGACATGGAATCGACACTGA-TAGATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGAATCAAC-CTCACTAGATGA
*
26822114 AAGCCAGTGTAAGACCTGTCTGGGACATGGAATCAACCTCACTATATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGAATCAACCTCACTAGATGA
*
26822163 AAGCCAGTGTAAGACCATGTTTGGGACATGG
1 AAGCCAGTGTAAGACC-TGTCTGGGACATGG
26822194 CGTTGGCATC
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
48 3 0.04
49 57 0.78
50 13 0.18
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGAATCAACCTCACTAGATGA
Found at i:26842224 original size:79 final size:81
Alignment explanation
Indices: 26842121--26842305 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26842111 GCTCCTCGTT
* *
26842121 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
26842184 GGATTTAGTAAC-TCGCA
64 AGATATAGTAACTTAGCA
* **
26842201 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAG
* *
26842265 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
26842281 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26842306 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCAG
ATATAGTAACTTAGCA
Found at i:26842238 original size:39 final size:40
Alignment explanation
Indices: 26842121--26842305 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
26842111 GCTCCTCGTT
*
26842121 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26842161 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26842201 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
26842240 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26842281 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26842306 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26844963 original size:30 final size:30
Alignment explanation
Indices: 26844927--26844983 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
26844917 CCGAGCCTAG
*
26844927 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
26844957 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
26844984 CATATTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:26848746 original size:27 final size:27
Alignment explanation
Indices: 26848714--26848767 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26848704 GAGGATTTTC
26848714 AGTAATGACTATTTCATCTATTTTCTT
1 AGTAATGACTATTTCATCTATTTTCTT
26848741 AGTAATGACTATTTCATCTATTTTCTT
1 AGTAATGACTATTTCATCTATTTTCTT
26848768 TCTTTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (27 bp):
AGTAATGACTATTTCATCTATTTTCTT
Found at i:26855135 original size:24 final size:24
Alignment explanation
Indices: 26855103--26855149 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
26855093 ACCTGACAAG
26855103 TAAGACCATAGTTCAATAAGCAAT
1 TAAGACCATAGTTCAATAAGCAAT
26855127 TAAGACCATAGTTCAATAAGCAA
1 TAAGACCATAGTTCAATAAGCAA
26855150 CAACATGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (24 bp):
TAAGACCATAGTTCAATAAGCAAT
Found at i:26856331 original size:69 final size:69
Alignment explanation
Indices: 26856255--26856395 Score: 219
Period size: 69 Copynumber: 2.0 Consensus size: 69
26856245 TCACCCCAGA
* * * * *
26856255 AGAAAGTTTTTTCTTTTGGATGAAAAAGAAGACTCAGTCCAAGATTTATTGGTCCGTATGAGGTT
1 AGAAAGTTCTTTCCTTTAGATGAAAAAGAAGACTAAGTCCAAGATTTATTGGTCCGTACGAGGTT
*
26856320 ATCG
66 ACCG
*
26856324 AGAAAGTTCTTTCCTTTAGATGAAAAAGAAGACTAAGTCTAAGATTTATTGGTCCGTACGAGGTT
1 AGAAAGTTCTTTCCTTTAGATGAAAAAGAAGACTAAGTCCAAGATTTATTGGTCCGTACGAGGTT
26856389 ACCG
66 ACCG
26856393 AGA
1 AGA
26856396 GAATGTCTCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.32
Consensus pattern (69 bp):
AGAAAGTTCTTTCCTTTAGATGAAAAAGAAGACTAAGTCCAAGATTTATTGGTCCGTACGAGGTT
ACCG
Found at i:26856874 original size:41 final size:41
Alignment explanation
Indices: 26856819--26856901 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
26856809 GTCAGAAAAT
26856819 TTTATTTATTTAATATTTATAAAGTTATTGGAGTGTCATAA
1 TTTATTTATTTAATATTTATAAAGTTATTGGAGTGTCATAA
26856860 TTTATTTATTTAATATTTATAAAGTTATTGGAGTGTCATAA
1 TTTATTTATTTAATATTTATAAAGTTATTGGAGTGTCATAA
26856901 T
1 T
26856902 AAAATTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (41 bp):
TTTATTTATTTAATATTTATAAAGTTATTGGAGTGTCATAA
Found at i:26857664 original size:34 final size:34
Alignment explanation
Indices: 26857620--26857684 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
26857610 TCTCAGTTAG
* * *
26857620 GGCCTTAGCCCATTTTAGTAATAGTAGCAGTCTA
1 GGCCTGAGCCCATTTCAGTAACAGTAGCAGTCTA
*
26857654 GGCCTGAGCCCATTTCAGTAACAGTATCAGT
1 GGCCTGAGCCCATTTCAGTAACAGTAGCAGT
26857685 ACAGTATACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (34 bp):
GGCCTGAGCCCATTTCAGTAACAGTAGCAGTCTA
Found at i:26860421 original size:42 final size:43
Alignment explanation
Indices: 26860324--26860479 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
26860314 AACAAGTACA
** * *
26860324 ATGCCGATGTCCTGGAC-GTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATATCG
**
26860367 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATA-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATATCG
* * * *
26860409 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCA-ATCG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATC-AATATCG
* * *
26860452 AGGCCTG-TGTCCTAGACACGGTCTTACA
1 ATGCC-GATGTCCCAGACAGGGTCTTACA
26860480 TGATGTCTCA
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
42 33 0.36
43 56 0.62
44 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATATCG
Found at i:26862952 original size:21 final size:21
Alignment explanation
Indices: 26862928--26862970 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26862918 CGTTCAGGGT
26862928 AATAACGTAAAATGTTGTTGA
1 AATAACGTAAAATGTTGTTGA
26862949 AATAACGTAAAATGTTGTTGA
1 AATAACGTAAAATGTTGTTGA
26862970 A
1 A
26862971 GGGTCAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.33
Consensus pattern (21 bp):
AATAACGTAAAATGTTGTTGA
Found at i:26868433 original size:61 final size:63
Alignment explanation
Indices: 26868300--26868433 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 63
26868290 ACTGGGCTTA
*
26868300 AGCCCTATT-CAGAAATCAGAGTTAACTGGGCCTTAGCCCACATCAATATTAATCTGGGCCAT
1 AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCACATCAATATTAATCTAGGCCAT
* * * * * *
26868362 AGCCC-CTTACAG-TATCAGAG-TATACTGGGCC-TAGCCCATATCAGTGTTAATCTAGGCCGT
1 AGCCCTATTACAGAAATCAGAGTTA-ACTGGGCCTTAGCCCACATCAATATTAATCTAGGCCAT
26868422 AGCCCTATTACA
1 AGCCCTATTACA
26868434 AGTCGAGATA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
60 31 0.51
61 22 0.36
62 8 0.13
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (63 bp):
AGCCCTATTACAGAAATCAGAGTTAACTGGGCCTTAGCCCACATCAATATTAATCTAGGCCAT
Found at i:26870095 original size:37 final size:38
Alignment explanation
Indices: 26870037--26870144 Score: 184
Period size: 37 Copynumber: 2.9 Consensus size: 38
26870027 TAGCTCGAAT
* *
26870037 AGTCCCCACACGTAGTTATCGGGTCTTACCCGGACA-A
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
26870074 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
26870112 A-TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGA
26870145 ATATATTTCC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 66 0.97
38 2 0.03
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.23
Consensus pattern (38 bp):
AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
Found at i:26870349 original size:48 final size:48
Alignment explanation
Indices: 26870285--26870430 Score: 238
Period size: 48 Copynumber: 3.0 Consensus size: 48
26870275 ATATACACAC
*
26870285 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
26870333 ATCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
26870381 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26870429 AT
1 AT
26870431 ATTTATCTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:26882059 original size:43 final size:43
Alignment explanation
Indices: 26882011--26882164 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 43
26882001 AGCTCGTACA
* *
26882011 ATGCCAACGTCCCAGACGTGGTCTTAGATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * *
26882054 ATGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCATATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * ** * * * *
26882096 ATGCTAATGTCTGAGGCATGGTCTTATACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
*
26882140 ATGCCAACGTCCCAGATGTGGTCTT
1 ATGCCAACGTCCCAGACGTGGTCTT
26882165 CCATGAAAGC
Statistics
Matches: 81, Mismatches: 23, Indels: 13
0.69 0.20 0.11
Matches are distributed among these distances:
42 22 0.27
43 38 0.47
44 21 0.26
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:26886812 original size:40 final size:40
Alignment explanation
Indices: 26886724--26886814 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 40
26886714 TACCTCAGTA
* * *
26886724 TCGCACACTTAGTGCTTTATATAGCTGAAGCTATTCCATT
1 TCGCACACTTAGTGCTTTATATAACTGAAGCTATTCAAAT
*
26886764 TCGTACACTTAGTGCTATT-TATAACTGCAA-CTATTTCAAAT
1 TCGCACACTTAGTGCT-TTATATAACTG-AAGCTA-TTCAAAT
26886805 T-GCACACTTA
1 TCGCACACTTA
26886815 CTGCCGAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
40 33 0.77
41 10 0.23
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.37
Consensus pattern (40 bp):
TCGCACACTTAGTGCTTTATATAACTGAAGCTATTCAAAT
Found at i:26896297 original size:30 final size:30
Alignment explanation
Indices: 26896263--26896320 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26896253 CTTTACGAGC
* *
26896263 TTAGGGGCAAAAGTGTAATTTTGACAAAGT
1 TTAGGAGCAAAAATGTAATTTTGACAAAGT
* *
26896293 TTAGGAGCAAAAATTTAATTTTGCCAAA
1 TTAGGAGCAAAAATGTAATTTTGACAAA
26896321 ATATGATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.31
Consensus pattern (30 bp):
TTAGGAGCAAAAATGTAATTTTGACAAAGT
Found at i:26900424 original size:18 final size:18
Alignment explanation
Indices: 26900383--26900418 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
26900373 CATTCCGAAG
* *
26900383 TATATATATATATACATA
1 TATATGTATATATACACA
26900401 TATATGTATATATACACA
1 TATATGTATATATACACA
26900419 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:26900931 original size:56 final size:55
Alignment explanation
Indices: 26900869--26901051 Score: 235
Period size: 56 Copynumber: 3.3 Consensus size: 55
26900859 GAGATTGGCG
* *
26900869 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
*
26900925 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
* * * * *
26900981 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
26901037 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
26901052 GATTATATAG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 90 0.80
57 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:26900951 original size:28 final size:28
Alignment explanation
Indices: 26900894--26901074 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
26900884 TAAATTGTGC
*
26900894 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26900921 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26900949 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26900977 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26901005 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26901033 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26901060 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26901075 GACTTATTAT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 40 0.27
28 107 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26905239 original size:40 final size:40
Alignment explanation
Indices: 26905089--26905279 Score: 185
Period size: 40 Copynumber: 4.8 Consensus size: 40
26905079 TCGAATGATG
* * * * *
26905089 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * * *
26905129 TCCGGACTAAGAT-CTGAAGGCA-TTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
26905168 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
*
26905207 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
26905248 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
26905280 AGCTATATCC
Statistics
Matches: 128, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
38 9 0.07
39 41 0.32
40 75 0.59
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:26905294 original size:79 final size:78
Alignment explanation
Indices: 26905144--26905305 Score: 177
Period size: 79 Copynumber: 2.1 Consensus size: 78
26905134 ACTAAGATCT
* * * **
26905144 GAAGGCATTGTGCGAGTTACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAAATC
1 GAAGGCATTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
*
26905209 CGGGTTAAGTCCC
66 CGGGTTAAATCCC
* *
26905222 GAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCA-TTGTACGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
26905285 TATCC-GGTTAAATTCC
62 AATCCGGGTTAAATCCC
26905301 GAAGG
1 GAAGG
26905306 TACGTGATTC
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
78 9 0.13
79 38 0.54
80 23 0.33
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
GAAGGCATTGTACGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
CGGGTTAAATCCC
Found at i:26908288 original size:80 final size:79
Alignment explanation
Indices: 26908204--26908375 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
26908194 GGACTAAGAT
*
26908204 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26908268 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
26908284 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26908349 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26908363 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26908376 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26908355 original size:39 final size:39
Alignment explanation
Indices: 26908151--26908373 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
26908141 TTGAATGCTG
* * * * *
26908151 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
26908191 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
26908230 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
26908271 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
26908311 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
26908350 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26908374 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:26908393 original size:79 final size:80
Alignment explanation
Indices: 26908231--26908408 Score: 182
Period size: 79 Copynumber: 2.2 Consensus size: 80
26908221 AGATACAAAT
* * *
26908231 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26908296 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * * *
26908311 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26908375 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
**
26908390 TCC-GGTTAAAACCCGAAGG
1 TCCGGGTTAAGCCCCGAAGG
26908409 TACGTGATTT
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 48 0.60
80 18 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26916228 original size:80 final size:79
Alignment explanation
Indices: 26916144--26916315 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
26916134 GGACTAAGAT
*
26916144 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26916208 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
26916224 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26916289 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26916303 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26916316 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26916295 original size:39 final size:39
Alignment explanation
Indices: 26916091--26916313 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
26916081 TTGAATGCTG
* * * * *
26916091 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
26916131 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
26916170 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
26916211 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
26916251 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
26916290 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26916314 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:26916333 original size:79 final size:80
Alignment explanation
Indices: 26916171--26916348 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
26916161 AGATACAAAT
* * * *
26916171 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26916236 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
26916251 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26916315 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
26916330 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26916349 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26924161 original size:80 final size:79
Alignment explanation
Indices: 26924077--26924248 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
26924067 GGACTAAGAT
*
26924077 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26924141 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
26924157 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26924222 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26924236 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26924249 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26924228 original size:39 final size:39
Alignment explanation
Indices: 26924024--26924246 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
26924014 TTGAATGCTG
* * * * *
26924024 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
26924064 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
26924103 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
26924144 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
26924184 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
26924223 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
26924247 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:26924266 original size:79 final size:80
Alignment explanation
Indices: 26924104--26924281 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
26924094 AGATACAAAT
* * * *
26924104 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26924169 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
26924184 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26924248 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
26924263 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26924282 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26942229 original size:27 final size:27
Alignment explanation
Indices: 26942199--26942376 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
26942189 ATATCGAGTC
* *
26942199 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26942226 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26942253 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26942281 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26942308 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26942335 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26942362 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26942377 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26942338 original size:82 final size:81
Alignment explanation
Indices: 26942220--26942375 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26942210 TGCTATATAA
*
26942220 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26942285 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26942302 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26942366 CACTTAGTGC
65 CACTTAGTGC
26942376 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26950232 original size:27 final size:27
Alignment explanation
Indices: 26950202--26950379 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
26950192 ATATCGAGTC
* *
26950202 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26950229 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26950256 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26950284 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26950311 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
26950338 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
26950365 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26950380 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26950341 original size:82 final size:81
Alignment explanation
Indices: 26950223--26950378 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26950213 TGCTATATAA
*
26950223 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26950288 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
26950305 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26950369 CACTTAGTGC
65 CACTTAGTGC
26950379 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26956510 original size:43 final size:43
Alignment explanation
Indices: 26956419--26956500 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
26956409 CAGTCTTTGG
*
26956419 GCCTAGCAGGCTATAATACCGGTGAGATAATATCGGGCTCCGA
1 GCCTAGCAGGCTATAATACCGGTGAAATAATATCGGGCTCCGA
*
26956462 GCCTAGCAGGCTATAATACCGGTGAAATGATATCGGGCT
1 GCCTAGCAGGCTATAATACCGGTGAAATAATATCGGGCT
26956501 TGAAGCCTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATACCGGTGAAATAATATCGGGCTCCGA
Found at i:26956605 original size:40 final size:40
Alignment explanation
Indices: 26956506--26956610 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
26956496 GGGCTTGAAG
* * * *
26956506 CCTAGTAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* *** **
26956547 TCTAGCAGGCTTCGTGCCGGTGATGAATTCAGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
26956587 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
26956611 TTGATAAAAG
Statistics
Matches: 50, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:26957645 original size:16 final size:16
Alignment explanation
Indices: 26957624--26957657 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26957614 TATATGAGTC
26957624 TATTTTCAGGGAAAAT
1 TATTTTCAGGGAAAAT
*
26957640 TATTTTTAGGGAAAAT
1 TATTTTCAGGGAAAAT
26957656 TA
1 TA
26957658 ATAGGAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (16 bp):
TATTTTCAGGGAAAAT
Found at i:26963153 original size:27 final size:27
Alignment explanation
Indices: 26963119--26963264 Score: 186
Period size: 27 Copynumber: 5.4 Consensus size: 27
26963109 TTGATAAGTT
*
26963119 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
26963146 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
** *
26963173 GTAGAATTATTGAAATA-CCTCTATAGG
1 GTAGAATTACCGAAATACCCT-TGTAGG
*
26963200 GTAGAATTACCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
26963227 GTAGAATTACCTAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
26963254 GTAAAATTACC
1 GTAGAATTACC
26963265 ATTTTGCCCC
Statistics
Matches: 104, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.02
27 99 0.95
28 3 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:26965873 original size:44 final size:44
Alignment explanation
Indices: 26965824--26965930 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 44
26965814 TTCGGGCCTC
* *
26965824 GGCCTAGCAAGCTT-TAA-GCTGGTGAATAATATTATCGGGCTTTG
1 GGCCTAGCAAGCTTATAATGCTGGT-AA-AATAATATCGAGCTTTG
* *
26965868 GGCCTAGC-AGGTTATAATGCTGGTAAGATAATATCGAGCTTTG
1 GGCCTAGCAAGCTTATAATGCTGGTAAAATAATATCGAGCTTTG
*
26965911 GGCCTAGCAGGC-TATAATGC
1 GGCCTAGCAAGCTTATAATGC
26965931 CGACGAAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
43 34 0.63
44 14 0.26
45 6 0.11
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (44 bp):
GGCCTAGCAAGCTTATAATGCTGGTAAAATAATATCGAGCTTTG
Found at i:26967806 original size:29 final size:29
Alignment explanation
Indices: 26967768--26967855 Score: 149
Period size: 29 Copynumber: 3.0 Consensus size: 29
26967758 GTGAAGGGTG
26967768 TTACATTCACACACTTAGTGCTCGATAATT
1 TTAC-TTCACACACTTAGTGCTCGATAATT
*
26967798 TTACTTCACACACTTAGTGCTCAATAATT
1 TTACTTCACACACTTAGTGCTCGATAATT
*
26967827 TTACTTCGCACACTTAGTGCTCGATAATT
1 TTACTTCACACACTTAGTGCTCGATAATT
26967856 CACATATATA
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 51 0.93
30 4 0.07
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (29 bp):
TTACTTCACACACTTAGTGCTCGATAATT
Found at i:26971024 original size:16 final size:17
Alignment explanation
Indices: 26971003--26971034 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26970993 TTTAATTTTA
26971003 TTCAATTATTT-AATTC
1 TTCAATTATTTGAATTC
26971019 TTCAATTATTTGAATT
1 TTCAATTATTTGAATT
26971035 ATTAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.31, C:0.09, G:0.03, T:0.56
Consensus pattern (17 bp):
TTCAATTATTTGAATTC
Found at i:26974363 original size:15 final size:15
Alignment explanation
Indices: 26974343--26974371 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26974333 CTTTGGGTTT
26974343 GACATCCCTGTCTTC
1 GACATCCCTGTCTTC
26974358 GACATCCCTGTCTT
1 GACATCCCTGTCTT
26974372 GCCATAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.38, G:0.14, T:0.34
Consensus pattern (15 bp):
GACATCCCTGTCTTC
Found at i:26983108 original size:5 final size:5
Alignment explanation
Indices: 26983098--26983123 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26983088 TGCTCGAATT
26983098 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
26983124 AGAGCATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:26985667 original size:43 final size:43
Alignment explanation
Indices: 26985619--26985775 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 43
26985609 AGCTTACACA
*
26985619 ATGCCAACATCCCAAACTTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACATCCCAGACTTGGTCTTACATGTAATCAAATATTG
** * *
26985662 ATGCC-ACTATCCCAGACAAGGTCTTACACGAAATCAAATA-TG
1 ATGCCAAC-ATCCCAGACTTGGTCTTACATGTAATCAAATATTG
* * ** * *
26985704 ATGTCGATGTCCCAGA-TATGGTCTTACATGTAAATCATAA-GTCG
1 ATGCCAACATCCCAGACT-TGGTCTTACATGT-AATCA-AATATTG
* *
26985748 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACATCCCAGACTTGGTCTTACA
26985776 CGATATCACA
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
42 25 0.28
43 38 0.43
44 26 0.29
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAACATCCCAGACTTGGTCTTACATGTAATCAAATATTG
Found at i:26987353 original size:27 final size:27
Alignment explanation
Indices: 26987322--26987499 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
26987312 ATATTGAGTC
* *
26987322 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
26987349 TGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26987376 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
26987404 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26987431 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
26987458 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26987485 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26987500 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26995266 original size:6 final size:6
Alignment explanation
Indices: 26995257--26995287 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
26995247 ATAGAAGAAG
*
26995257 AAATAA AAATAA AAATAA AAGTAA AAATAA A
1 AAATAA AAATAA AAATAA AAATAA AAATAA A
26995288 GAAAATAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:27000434 original size:26 final size:26
Alignment explanation
Indices: 27000367--27000435 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
27000357 TTTGTGATCG
*
27000367 TCCTG-TTATATGGCTCTTCGTGAGCT
1 TCCTGATTA-ATGGCTCTTCGTAAGCT
* ** *
27000393 TCCCGATTAAACGCTCTTTGTAAGCT
1 TCCTGATTAATGGCTCTTCGTAAGCT
27000419 TCCTGATTAATGGCTCT
1 TCCTGATTAATGGCTCT
27000436 CTGGAGCTTC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 31 0.91
27 3 0.09
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (26 bp):
TCCTGATTAATGGCTCTTCGTAAGCT
Done.