Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103038859
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4950000 characters in sequence are not A, C, G, or T
File 98 of 320
Found at i:31477375 original size:47 final size:47
Alignment explanation
Indices: 31477321--31477514 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
31477311 TTAGGATTTT
** * *
31477321 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
31477368 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
31477415 ATGCGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
31477462 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
31477509 ATGTGA
1 ATGTGA
31477515 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:31477829 original size:37 final size:37
Alignment explanation
Indices: 31477721--31477829 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
31477711 GGAAATATAT
*
31477721 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
31477758 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
31477795 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
31477830 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:31479155 original size:40 final size:40
Alignment explanation
Indices: 31479103--31479483 Score: 530
Period size: 40 Copynumber: 9.6 Consensus size: 40
31479093 GAGAGTGTTA
* *
31479103 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* **
31479143 TATTCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31479183 TATCCGGACTAAGTCCCGAAGGGTATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
31479223 TATCCGGACTAAGT-CCGAAGGGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31479262 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31479302 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31479342 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31479382 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * * *
31479422 TATCCGTACTAAACCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
31479462 TATCCGGGCTAGGTCCTGAAGA
1 TATCCGGACTAAGTCCCGAAGA
31479484 ACAATCATGC
Statistics
Matches: 302, Mismatches: 38, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 37 0.12
40 265 0.88
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:31479392 original size:159 final size:160
Alignment explanation
Indices: 31479096--31479468 Score: 577
Period size: 159 Copynumber: 2.3 Consensus size: 160
31479086 GAGAATTGAG
* * *
31479096 AGTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGTATTCGGACTAAGTTTCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAAGTTCCG
* * * *
31479161 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGGGTATTCGTGCTAGTGATGTAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
*
31479226 CCGGACTAAG-TCCGAAGGGCATTCGTGCT
131 CCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
31479255 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAAGTTCCG
*
31479320 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
66 AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
31479385 CCGGACTAAGTTCCGAAGAGCATTCGTGCT
131 CCGGACTAAGTTCCGAAGAGCATTCGTGCT
** ** * *
31479415 AGTGATATATCCGTACTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGTATCCGG
31479469 GCTAGGTCCT
Statistics
Matches: 192, Mismatches: 21, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
159 129 0.67
160 63 0.33
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (160 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
CCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:31483582 original size:47 final size:47
Alignment explanation
Indices: 31483528--31483721 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
31483518 TTAGGATTTT
** * *
31483528 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
31483575 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
31483622 ATGCGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
31483669 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
31483716 ATGTGA
1 ATGTGA
31483722 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:31484036 original size:37 final size:37
Alignment explanation
Indices: 31483928--31484036 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
31483918 GGAAATATAT
*
31483928 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
31483965 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
31484002 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
31484037 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:31485361 original size:40 final size:40
Alignment explanation
Indices: 31485309--31485690 Score: 539
Period size: 40 Copynumber: 9.6 Consensus size: 40
31485299 GAGAGTGTTA
* *
31485309 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGTTG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* **
31485349 TATTCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31485389 TATCCGGACTAAGTCCCGAAGGGTATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
*
31485429 TATCCGGACTAAGTCCCGAAGGGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31485469 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31485509 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31485549 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* *
31485589 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* ** * * *
31485629 TATCCGTACTAAACCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
31485669 TATCCGGGCTAGGTCCTGAAGA
1 TATCCGGACTAAGTCCCGAAGA
31485691 ACAATCATGC
Statistics
Matches: 304, Mismatches: 38, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 304 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:31489503 original size:47 final size:47
Alignment explanation
Indices: 31489449--31489642 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
31489439 TTAGGATTTT
** * * *
31489449 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
31489496 ATGTGATGAATGTGAACAAGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
31489543 ATGCGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
31489590 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
31489637 ATGTGA
1 ATGTGA
31489643 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:31489957 original size:37 final size:37
Alignment explanation
Indices: 31489849--31489957 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
31489839 GGAAATATAT
*
31489849 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
31489886 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * **
31489923 TCCGGCTAAGGCCCGATAACTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
31489958 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:31495017 original size:29 final size:29
Alignment explanation
Indices: 31494910--31495016 Score: 187
Period size: 29 Copynumber: 3.7 Consensus size: 29
31494900 GCATGTATAA
31494910 GAATGTGATTTGGGCCTAATAGGCCATAT
1 GAATGTGATTTGGGCCTAATAGGCCATAT
31494939 GAATGTGATTTGGGCCTAATAGGCCATAT
1 GAATGTGATTTGGGCCTAATAGGCCATAT
* *
31494968 GAATGTGATTTGGGCCTAATGGGCCAAAT
1 GAATGTGATTTGGGCCTAATAGGCCATAT
*
31494997 GAATATGATTTGGGCCTAAT
1 GAATGTGATTTGGGCCTAAT
31495017 GTGTGACAGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATAGGCCATAT
Found at i:31496725 original size:40 final size:40
Alignment explanation
Indices: 31496670--31496846 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
31496660 GATGATAACT
* *
31496670 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
31496710 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
31496750 AAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
31496790 -GGCTAAGT-CC-AAGGCATTTGT-CGAGTTACTATA-AC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
31496825 GGGCTAAGT-CCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
31496847 AGCAAGTAGT
Statistics
Matches: 128, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
35 1 0.01
36 22 0.17
37 21 0.16
38 2 0.02
39 7 0.05
40 74 0.58
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:31496861 original size:74 final size:77
Alignment explanation
Indices: 31496664--31496878 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 77
31496654 TATTCGGATG
* *
31496664 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAAC-GGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCC-GGCTAAGTCCCGAAGGC
*
31496728 ATTTGTGCTAGTTACT
62 ATTTGTGCGAGTTACT
* ** * *
31496744 ATATCCAAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGT-CC-AAGGCAT
1 ATA-ACGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGCTAAGTCCCGAAGGCAT
31496807 TTGT-CGAGTTACT
64 TTGTGCGAGTTACT
* * *
31496820 ATAACGGGCTAAGT-CCGAAGGCATTTGAGCAAGTAGTTATATTCGGCTAAATCCCGAAG
1 ATAACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGCTAAGTCCCGAAG
31496879 ATGCTTGGGT
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
73 2 0.02
74 30 0.26
75 10 0.09
76 14 0.12
77 11 0.09
78 2 0.02
79 8 0.07
80 36 0.31
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (77 bp):
ATAACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACT
Found at i:31502506 original size:55 final size:53
Alignment explanation
Indices: 31502411--31502559 Score: 138
Period size: 55 Copynumber: 2.8 Consensus size: 53
31502401 TCTACTTGTT
** * *
31502411 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATCGACCATGCG
1 GCACTAA-TGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATCGACCACGCG
* * * * ** *
31502465 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAA-TGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATCGACCACGCG
* *
31502520 GCACTAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
31502560 GGCTCAATAT
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
53 22 0.28
54 22 0.28
55 34 0.44
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (53 bp):
GCACTAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATCGACCACGCG
Found at i:31502523 original size:27 final size:27
Alignment explanation
Indices: 31502384--31502559 Score: 135
Period size: 27 Copynumber: 6.6 Consensus size: 27
31502374 TAAATTGTAC
*
31502384 AGCACTAAGTGTGCGATTCT-ACT-TGT
1 AGCACTAAGTGTGCGATT-TGATTATGT
* ** *
31502410 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* * ** *
31502436 ATGCACTAAGTGTGCGAATCGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
31502464 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
31502492 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * *
31502519 GGCACTAA-TGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
31502545 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31502560 GGCTCAATAT
Statistics
Matches: 119, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
25 1 0.01
26 38 0.32
27 59 0.50
28 21 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:31502524 original size:82 final size:79
Alignment explanation
Indices: 31502385--31502533 Score: 185
Period size: 82 Copynumber: 1.8 Consensus size: 79
31502375 AAATTGTACA
* *
31502385 GCACTAAGTGTGCGATTCTACTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTG
1 GCACTAAGTGTGCGATTCTACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA-TGTG
31502450 CGAATCGACCATGCG
65 CGAATCGACCATGCG
* ** *
31502465 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAT
1 GCACTAAGTGTGC-GATTCT-ACT-TGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAT
31502528 GTGCGA
62 GTGCGA
31502534 GTTGATTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
80 14 0.24
81 14 0.24
82 31 0.53
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (79 bp):
GCACTAAGTGTGCGATTCTACTTGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAATGTGC
GAATCGACCATGCG
Found at i:31510384 original size:27 final size:26
Alignment explanation
Indices: 31510354--31510529 Score: 174
Period size: 27 Copynumber: 6.5 Consensus size: 26
31510344 AAATTGTACA
31510354 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
31510381 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
31510408 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
31510435 GCACTAAGTGTGCGAGTTTGACTATG-T
1 GCACTAAGTGTGCGA--TTGACTATGTT
* *
31510462 GCACTAAGTGTGCGATTTGATTATGTA
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
31510489 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
31510516 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
31510530 GACTCGATAT
Statistics
Matches: 130, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 10 0.08
27 110 0.85
28 10 0.08
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:31510414 original size:54 final size:53
Alignment explanation
Indices: 31510354--31510529 Score: 194
Period size: 54 Copynumber: 3.3 Consensus size: 53
31510344 AAATTGTACA
* *
31510354 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
* ** * *
31510408 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 GCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGA-ATTGAATATGAT
* * *
31510462 GCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 GCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
*
31510515 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
31510530 GACTCGATAT
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
53 9 0.09
54 85 0.82
55 10 0.10
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (53 bp):
GCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAATTGAATATGAT
Found at i:31510465 original size:81 final size:81
Alignment explanation
Indices: 31510354--31510508 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
31510344 AAATTGTACA
31510354 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
31510418 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
31510435 GCACTAAGTGTGCGAGTTTGACTATG-TGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
31510499 TGCGAGTTGA
65 TGCGAATTGA
31510509 TTATATAGCA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
81 57 0.85
82 10 0.15
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:31510520 original size:81 final size:81
Alignment explanation
Indices: 31510350--31510529 Score: 229
Period size: 81 Copynumber: 2.2 Consensus size: 81
31510340 GATTAAATTG
31510350 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
31510415 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
31510431 TGCGGCACTAAGTGTGCGAGTTTGACTATG-TGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
31510494 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31510512 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31510530 GACTCGATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 74 0.88
82 9 0.11
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31513914 original size:55 final size:54
Alignment explanation
Indices: 31513819--31513968 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
31513809 CTACTTTGTT
* ** * *
31513819 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
31513873 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
31513928 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
31513969 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:31513931 original size:27 final size:27
Alignment explanation
Indices: 31513791--31513968 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
31513781 TAAATTGTAC
31513791 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
31513818 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
31513844 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
31513872 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
31513900 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
31513927 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
31513954 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31513969 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:31513932 original size:82 final size:81
Alignment explanation
Indices: 31513792--31513947 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
31513782 AAATTGTACA
* * * *
31513792 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
31513857 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
31513873 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
31513936 TGTGCGAGTTGA
63 TGTGCGAATTGA
31513948 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:31521331 original size:40 final size:40
Alignment explanation
Indices: 31521276--31521479 Score: 241
Period size: 40 Copynumber: 5.1 Consensus size: 40
31521266 CGGATGATAA
* * *
31521276 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
31521316 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
31521356 CTGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
31521396 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAATTACCATAA
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
31521436 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTA-CTATAT
31521476 CCGG
1 CCGG
31521480 TTAAATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:31521405 original size:80 final size:80
Alignment explanation
Indices: 31521272--31521479 Score: 312
Period size: 80 Copynumber: 2.6 Consensus size: 80
31521262 TATTCGGATG
* * * *
31521272 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAAGGC
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCGGGCTAAGCCCCGAAGGC
* *
31521336 ATTTGTGCGAGTTACT
65 ATTTGTGCGAATTACC
*
31521352 ATAACTGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
31521417 TTTGTGCGAATTACC
66 TTTGTGCGAATTACC
*
31521432 ATAACCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCCGG
1 ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTA-CTATATCCGG
31521480 TTAAATTCCG
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 2 0.02
80 114 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGCCCCGAAGGCA
TTTGTGCGAATTACC
Found at i:31524799 original size:47 final size:47
Alignment explanation
Indices: 31524739--31524907 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
31524729 GCATTGGCAC
* *
31524739 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCGTTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
31524786 TAAGACAAGGATACCATGTAAGACCATGTTTCGAACATGGAATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
31524833 TAAAACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
31524880 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
31524908 CCAAGGAATG
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 112 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:31524959 original size:55 final size:53
Alignment explanation
Indices: 31524886--31525015 Score: 172
Period size: 55 Copynumber: 2.4 Consensus size: 53
31524876 TTGGTAAGAT
*
31524886 AAGGATATCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTT-C-ATAAGG-A
* * * *
31524942 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTCATAAGGA
*
31524994 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
31525016 TTAAGACATG
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.06
53 21 0.32
54 1 0.02
55 36 0.55
56 4 0.06
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTCATAAGGA
Found at i:31525014 original size:53 final size:54
Alignment explanation
Indices: 31524886--31525052 Score: 185
Period size: 53 Copynumber: 3.1 Consensus size: 54
31524876 TTGGTAAGAT
* * *
31524886 AAGGATATCATGTAAGACCATGCCAAGGAATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGAA
* *
31524942 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG-C
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAA
* ** * * * *
31524994 AAGGATACCACGTAAGACCATGTTAAGACATGGCAATGGTAAGTTCAAAAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGAA
31525049 AAGG
1 AAGG
31525053 TTCCCGAGTA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.04
53 40 0.43
54 6 0.06
55 40 0.43
56 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGAA
Found at i:31527578 original size:13 final size:13
Alignment explanation
Indices: 31527560--31527589 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
31527550 GGCATGGGCA
*
31527560 TGTGCCCTGGCCG
1 TGTGCCCTGACCG
31527573 TGTGCCCTGACCG
1 TGTGCCCTGACCG
31527586 TGTG
1 TGTG
31527590 AATTCTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.03, C:0.33, G:0.37, T:0.27
Consensus pattern (13 bp):
TGTGCCCTGACCG
Found at i:31530845 original size:17 final size:18
Alignment explanation
Indices: 31530823--31530856 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31530813 CACATTGAAG
31530823 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
31530840 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
31530857 CTTCCTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:31533083 original size:27 final size:26
Alignment explanation
Indices: 31532978--31533101 Score: 171
Period size: 26 Copynumber: 4.8 Consensus size: 26
31532968 CCTCATTAAT
**
31532978 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
31533003 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
* * * *
31533028 AATTAGGCCATAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
31533054 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
31533081 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
31533102 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
25 30 0.34
26 31 0.36
27 26 0.30
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:31533173 original size:9 final size:9
Alignment explanation
Indices: 31533159--31533184 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
31533149 ACATCATGTG
31533159 CATATCATA
1 CATATCATA
31533168 CATATCATA
1 CATATCATA
31533177 CATATCAT
1 CATATCAT
31533185 GTGCATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:31533180 original size:4 final size:5
Alignment explanation
Indices: 31533159--31533204 Score: 53
Period size: 5 Copynumber: 9.6 Consensus size: 5
31533149 ACATCATGTG
*
31533159 CATAT CATA- CATAT CATA- CATAT CATGT GCATAT CATAT CA-AT CAT
1 CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CAT
31533205 GTATATCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
4 12 0.34
5 19 0.54
6 4 0.11
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.35
Consensus pattern (5 bp):
CATAT
Found at i:31533191 original size:20 final size:20
Alignment explanation
Indices: 31533168--31533206 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
31533158 GCATATCATA
31533168 CATATCATA-CATATCATGTG
1 CATATCATATCA-ATCATGTG
31533188 CATATCATATCAATCATGT
1 CATATCATATCAATCATGT
31533207 ATATCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (20 bp):
CATATCATATCAATCATGTG
Found at i:31538047 original size:36 final size:36
Alignment explanation
Indices: 31537975--31538089 Score: 176
Period size: 37 Copynumber: 3.1 Consensus size: 36
31537965 TTATTATGAA
* * *
31537975 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
31538012 GTCTTACCCGGACAAAATCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCACACGTAGTCATCGG
*
31538048 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGA
1 GTCTTACCCGGACAAAAT-CCCACACGTAGTCATCGG
31538085 GTCTT
1 GTCTT
31538090 TAGAGCTCAG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 33 0.45
37 40 0.55
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (36 bp):
GTCTTACCCGGACAAAATCCCACACGTAGTCATCGG
Found at i:31538383 original size:49 final size:47
Alignment explanation
Indices: 31538208--31538481 Score: 388
Period size: 47 Copynumber: 5.7 Consensus size: 47
31538198 CTCTTCGGGA
* * * * * *
31538208 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
31538255 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31538302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31538349 CTTATCACATGTATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
31538398 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31538447 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
31538482 AGAATCCTAA
Statistics
Matches: 209, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 115 0.55
49 93 0.44
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31538402 original size:96 final size:94
Alignment explanation
Indices: 31538208--31538481 Score: 388
Period size: 96 Copynumber: 2.9 Consensus size: 94
31538198 CTCTTCGGGA
* * * * * * * *
31538208 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
31538273 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCAGCCATTAGGC
31538302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATAC
31538367 ACTTTCACATTCATCACATCAGCCATTAGGC
64 ACTTTCACATTCATCACATCAGCCATTAGGC
* *
31538398 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
31538463 A-TGTTCACATCCATCACAT
64 ACT-TTCACATTCATCACAT
31538482 AGAATCCTAA
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 48 0.29
95 1 0.01
96 68 0.42
98 46 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCAGCCATTAGGC
Found at i:31543279 original size:27 final size:27
Alignment explanation
Indices: 31543249--31543426 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31543239 ATATTGAGTC
* * * *
31543249 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31543276 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31543303 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31543331 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31543358 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31543385 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31543412 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31543427 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31543388 original size:82 final size:81
Alignment explanation
Indices: 31543270--31543425 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31543260 TGCTATATAA
* *
31543270 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31543335 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31543352 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31543416 CACTTAGTGC
65 CACTTAGTGC
31543426 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31545058 original size:40 final size:40
Alignment explanation
Indices: 31545004--31545175 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
31544994 GCTGTCACAG
* * *
31545004 ACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
31545044 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
* * * *
31545084 ACTTAGTCCGGATACATCACTAGCATGAATGCTCTTCGGA
1 ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
* * * * *
31545124 ACTTAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGG
1 ACCTAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTCGGA
*
31545164 ACTTAGCCCGGA
1 ACCTAGCCCGGA
31545176 CATCATTCAA
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 104 0.89
41 8 0.07
42 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACCTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGA
Found at i:31545526 original size:29 final size:29
Alignment explanation
Indices: 31545487--31545565 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
31545477 CTTAATAATC
*
31545487 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
31545517 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
31545546 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
31545566 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:31545608 original size:43 final size:43
Alignment explanation
Indices: 31545547--31545649 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
31545537 TGCATTTCAA
31545547 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
31545590 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
31545633 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
31545650 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:31547563 original size:37 final size:37
Alignment explanation
Indices: 31547513--31547628 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
31547503 TTATTACGAA
* * * *
31547513 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
31547550 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
*
31547587 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGA
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
31547624 GTCTT
1 GTCTT
31547629 TAGAGCTCGG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:31547825 original size:47 final size:47
Alignment explanation
Indices: 31547747--31548020 Score: 379
Period size: 47 Copynumber: 5.7 Consensus size: 47
31547737 CCCTTCGGGA
* * * * * *
31547747 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31547794 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
31547841 CTTATCACATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
31547888 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
31547937 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
31547986 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
31548021 AGAATCCTAA
Statistics
Matches: 207, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 112 0.54
49 94 0.45
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:31547940 original size:96 final size:94
Alignment explanation
Indices: 31547747--31548020 Score: 379
Period size: 96 Copynumber: 2.9 Consensus size: 94
31547737 CCCTTCGGGA
* * * * * * * *
31547747 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
31547812 TTTCACATTCATCACATCGACCATTAGGC
66 TTTCACATTCATCACATCGACCATTAGGC
*
31547841 CTTATCACATATATACACTTTCACATTCATCAAATCGGCCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATAC
*
31547906 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGACCATTAGGC
* *
31547937 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
31548002 A-TGTTCACATCCATCACAT
64 ACT-TTCACATTCATCACAT
31548021 AGAATCCTAA
Statistics
Matches: 161, Mismatches: 14, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
94 47 0.29
95 1 0.01
96 68 0.42
98 45 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGACCATTAGGC
Found at i:31555932 original size:26 final size:26
Alignment explanation
Indices: 31555887--31555958 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
31555877 CCTCTTTAAT
31555887 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
31555912 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
31555938 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
31555959 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 10 0.22
26 35 0.78
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:31556033 original size:20 final size:20
Alignment explanation
Indices: 31556008--31556055 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
31555998 TTATGAATAC
31556008 ATCATGTACATATCATA-CA
1 ATCATGTACATATCATATCA
*
31556027 TATCATGTGCATATCATATCA
1 -ATCATGTACATATCATATCA
31556048 ATCATGTA
1 ATCATGTA
31556056 TATCAAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (20 bp):
ATCATGTACATATCATATCA
Found at i:31556039 original size:11 final size:11
Alignment explanation
Indices: 31556008--31556055 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 11
31555998 TTATGAATAC
31556008 ATCATGTACAT
1 ATCATGTACAT
31556019 ATCA--TACAT
1 ATCATGTACAT
*
31556028 ATCATGTGCAT
1 ATCATGTACAT
*
31556039 ATCATAT-CA-
1 ATCATGTACAT
31556048 ATCATGTA
1 ATCATGTA
31556056 TATCAAAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 15 0.48
10 2 0.06
11 14 0.45
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:31556118 original size:25 final size:25
Alignment explanation
Indices: 31556090--31556137 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31556080 ATAAGTAAAC
* * *
31556090 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
31556115 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
31556138 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:31557461 original size:11 final size:11
Alignment explanation
Indices: 31557445--31557469 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31557435 GACACAAGTG
31557445 AAAAAAAAGAA
1 AAAAAAAAGAA
31557456 AAAAAAAAGAA
1 AAAAAAAAGAA
31557467 AAA
1 AAA
31557470 TGCCACCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:31563318 original size:43 final size:43
Alignment explanation
Indices: 31563270--31563374 Score: 117
Period size: 44 Copynumber: 2.4 Consensus size: 43
31563260 ATGCCAATGC
31563270 CCCAGACGTGGTCTTACATGT-AATCA-AACATCGATACC-ACTGT
1 CCCAGACGTGGTCTTACATGTAAAT-AGAA-ATCGATACCAAC-GT
* * * *
31563313 CCCAGACATGGTTTTACATGTAAAATAGAAGTCGATGCCAACGT
1 CCCAGACGTGGTCTTACATGT-AAATAGAAATCGATACCAACGT
31563357 CCCAGACGTGGTCTTACA
1 CCCAGACGTGGTCTTACA
31563375 CGAAATCCTA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
43 19 0.37
44 26 0.50
45 7 0.13
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
CCCAGACGTGGTCTTACATGTAAATAGAAATCGATACCAACGT
Found at i:31567429 original size:27 final size:26
Alignment explanation
Indices: 31567385--31567435 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
31567375 CTCGCTGCAA
*
31567385 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
31567412 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
31567436 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:31574980 original size:27 final size:25
Alignment explanation
Indices: 31574941--31574999 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 25
31574931 ACATATATAT
*
31574941 ATATCTGTTTGGTGGCCTAGCCACA
1 ATATCTGTTTGGTGACCTAGCCACA
* * *
31574966 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-T-TGGTGACCTAGCCACA
31574993 ATATCTG
1 ATATCTG
31575000 GCAGCCTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 8 0.29
26 1 0.04
27 19 0.68
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
ATATCTGTTTGGTGACCTAGCCACA
Found at i:31586554 original size:27 final size:27
Alignment explanation
Indices: 31586538--31586786 Score: 336
Period size: 27 Copynumber: 9.2 Consensus size: 27
31586528 CAATTTGTAA
* *
31586538 AATTATCGTTTTACCCTCAATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
31586565 AATTACCGTTTTACCCTCTATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
31586592 AATTACCATTTTACCCTCAATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
* * *
31586619 AATTACCATTTTACCCTCGATTTATAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
31586646 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
* *
31586673 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAG
** *
31586700 AATTATAGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
*
31586727 AATTACTGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTACAG
*
31586754 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAG
31586781 AATTAC
1 AATTAC
31586787 TAAAATACTC
Statistics
Matches: 198, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAG
Found at i:31586804 original size:27 final size:27
Alignment explanation
Indices: 31586774--31586986 Score: 189
Period size: 27 Copynumber: 7.9 Consensus size: 27
31586764 TTACCCTCGA
* * * *
31586774 TTTACAAAATTACTAAAATACTCTTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* *
31586801 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACCAAAATACCCCTGG
* * *
31586827 ATCAGTAAAATTACGAAAATACCCCTGG
1 TTTA-TAAAATTACCAAAATACCCCTGG
* *
31586855 TTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
31586882 TTTGTAAAATTACCAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* * *
31586909 CTTGTAAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCCTGG
* * * * *
31586936 TTTGTGAAATTATCAAAATA-CTCTCGA
1 TTTATAAAATTACCAAAATACCCCT-GG
* *
31586963 TTTGTAAAA-TATCAAAATACCCCT
1 TTTATAAAATTACCAAAATACCCCT
31586987 ATAGGGTAGA
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 18 0.11
27 136 0.85
28 6 0.04
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:31586813 original size:81 final size:81
Alignment explanation
Indices: 31586546--31586788 Score: 371
Period size: 81 Copynumber: 3.0 Consensus size: 81
31586536 AAAATTATCG
* * * * * *
31586546 TTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCTATTTATAGAATTACCATTTTACCCTCA
1 TTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
*
31586611 ATTTATAGAATTACCA
66 ATTTATAGAATTACTA
*
31586627 TTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
1 TTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
31586692 ATTTATAGAATTA-TA
66 ATTTATAGAATTACTA
*
31586707 GTTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC
1 -TTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTC
* *
31586772 GATTTACAAAATTACTA
65 GATTTATAGAATTACTA
31586789 AAATACTCTT
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
80 1 0.01
81 145 0.98
82 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.07, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCG
ATTTATAGAATTACTA
Found at i:31586823 original size:54 final size:54
Alignment explanation
Indices: 31586711--31586931 Score: 169
Period size: 54 Copynumber: 4.1 Consensus size: 54
31586701 ATTATAGTTT
**** * * ****
31586711 TACCCTCGATTTACAAAATTACTGTTTTA-CCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCCT-GGTTTACAAAATTACCAAAA
* *
31586765 TACCCTCGATTTACAAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAA
* * * ** *
31586819 TACCCTCGA-TCAGTAAAATTACGAAAATACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAA
* ** * * **
31586873 TACCC-CTGGTTTGTAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAA
31586927 TACCC
1 TACCC
31586932 CTGATTTGTG
Statistics
Matches: 137, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
53 3 0.02
54 131 0.96
55 3 0.02
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:31586823 original size:81 final size:81
Alignment explanation
Indices: 31586549--31586828 Score: 213
Period size: 81 Copynumber: 3.5 Consensus size: 81
31586539 ATTATCGTTT
* * **** * * *
31586549 TACCCTCAATTTACAGAATTACCGTTTTACCCTCTATTTATAGAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * * ***
31586614 TATAGAATTACCA-TTT
66 TACAAAATTA-TAGAAA
* *****
31586630 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
* * ***
31586695 TATAGAATTATAGTTT
66 TACAAAATTATAGAAA
***** *
31586711 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
31586776 TACAAAATTACTA-AAA
66 TACAAAATTA-TAGAAA
* * *
31586792 TACTCTTGGTTTACAAAATTACCAAAATACCCTCGAT
1 TACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
31586829 CAGTAAAATT
Statistics
Matches: 174, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 171 0.98
82 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTATAGAAA
Found at i:31586932 original size:54 final size:54
Alignment explanation
Indices: 31586779--31586986 Score: 233
Period size: 54 Copynumber: 3.9 Consensus size: 54
31586769 CTCGATTTAC
* * * ** **
31586779 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GATTTGT
* * *
31586833 AAAATTACGAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGT
*
31586887 AAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGT
* * * * *
31586941 GAAATTATCAAAATA-CTCTCGATTTGTAAAA-TATCAAAATACCCCT
1 AAAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCT
31586987 ATAGGGTAGA
Statistics
Matches: 133, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
53 17 0.13
54 112 0.84
55 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTGT
Found at i:31586940 original size:81 final size:82
Alignment explanation
Indices: 31586779--31586986 Score: 246
Period size: 81 Copynumber: 2.6 Consensus size: 82
31586769 CTCGATTTAC
* * ** *
31586779 AAAATTACTAAAATACTCTTGGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACGA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTCGATCAGTAAAATTACCA
*
31586843 AAATACCCCTGGTTTGT
66 AAATACCCCTGATTTGT
* * *
31586860 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGCT-TGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTCGATCAGTAAAATTACCA
31586924 AAATACCCCTGATTTGT
66 AAATACCCCTGATTTGT
* * * *
31586941 GAAATTA-TCAAAATA-CTCTCGATTTGTAAAA-TATCAAAATACCCCT
1 AAAATTACT-AAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCCT
31586987 ATAGGGTAGA
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
80 18 0.16
81 87 0.78
82 6 0.05
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (82 bp):
AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTCGATCAGTAAAATTACCA
AAATACCCCTGATTTGT
Found at i:31587001 original size:53 final size:54
Alignment explanation
Indices: 31586943--31587164 Score: 170
Period size: 54 Copynumber: 4.1 Consensus size: 54
31586933 TGATTTGTGA
** *
31586943 AATTATCAAAATACTCTCGATTTG-TA-AAATATCAAAATACCCCTATAGGGTAG
1 AATTATCAAAATAC-CTCGATAGGATAGAAATACCAAAATACCCCTATAGGGTAG
* * * *
31586996 AATTATCGAAATACCTCTATAGGATAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTATCAAAATACCTCGATAGGATAGAAATACCAAAATACCCCTATAGGGTAG
* * * * * * *
31587050 AATTA-CTGAAATAACC-CTG-TAGGGTAGAATTATCGAAATACCCCTGTAGGGTAA
1 AATTATC-AAAAT-ACCTC-GATAGGATAGAAATACCAAAATACCCCTATAGGGTAG
* * * * *
31587104 AATTA-CTGAAATACCCTTG-TAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTATC-AAAATA-CCTCGATAGGATAGAAATACCAAAATACCCCTATAGGGTAG
31587158 AATTATC
1 AATTATC
31587165 GAGATACCCT
Statistics
Matches: 145, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
52 6 0.04
53 17 0.12
54 118 0.81
55 4 0.03
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (54 bp):
AATTATCAAAATACCTCGATAGGATAGAAATACCAAAATACCCCTATAGGGTAG
Found at i:31587081 original size:81 final size:81
Alignment explanation
Indices: 31586977--31587191 Score: 286
Period size: 81 Copynumber: 2.7 Consensus size: 81
31586967 TAAAATATCA
* * *
31586977 AAATACCCCTATAGGGTAGAATTATCGAAATACCTCTATAGGATAGAATTACCGAAATACCCCTA
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGATAAAATTACCGAAATACCCCTA
* *
31587042 TAGGGTAGAATTACTG
66 TAGGGTAGAAATACCG
* * * * * *
31587058 AAATAACCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAAAATTACTGAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGATAAAATTACCGAAATACCCCTA
31587123 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
* * * * *
31587139 AAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTTTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGATAAAATTACC
31587192 ATTTTGCCCC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 117 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGATAAAATTACCGAAATACCCCTA
TAGGGTAGAAATACCG
Found at i:31587183 original size:27 final size:27
Alignment explanation
Indices: 31586972--31587173 Score: 255
Period size: 27 Copynumber: 7.5 Consensus size: 27
31586962 ATTTGTAAAA
* *
31586972 TATCAAAATACCCCTATAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* * *
31586999 TATCGAAATACCTCTATAGGATAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* *
31587026 TACCGAAATACCCCTATAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
31587053 TA-CTGAAATAACCCTGTAGGGTAGAAT
1 TATC-GAAATACCCCTGTAGGGTAGAAT
*
31587080 TATCGAAATACCCCTGTAGGGTAAAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* *
31587107 TA-CTGAAATACCCTTGTAGGGTAGAAA
1 TATC-GAAATACCCCTGTAGGGTAGAAT
*
31587134 TACCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
*
31587161 TATCGAGATACCC
1 TATCGAAATACCC
31587174 TTTTGGGGTA
Statistics
Matches: 154, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
26 2 0.01
27 150 0.97
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
TATCGAAATACCCCTGTAGGGTAGAAT
Found at i:31587477 original size:24 final size:25
Alignment explanation
Indices: 31587394--31587487 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
31587384 AGGAAGTGCT
* *
31587394 AAAAGGGCTATGCCCCGGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
31587419 AAAGGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
** *
31587444 AAAATTGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
31587468 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
31587488 ATTAAAAGAG
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
24 17 0.30
25 40 0.70
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:31587500 original size:24 final size:24
Alignment explanation
Indices: 31587394--31587500 Score: 90
Period size: 25 Copynumber: 4.4 Consensus size: 24
31587384 AGGAAGTGCT
* * *
31587394 AAAAGGGCTATGCCCCGGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* * *
31587418 GAAAGGGGCTTTGCCCCAATTTACC
1 -AAAAGGGCTTTGCCCCAGTTTATC
**
31587443 GAAAATTGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
31587468 AAAAGGGCTTTGCCCTAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
31587491 AAAAGAGGCT
1 AAAAG-GGCT
31587501 AGGCCTCCAG
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
23 9 0.13
24 19 0.28
25 40 0.59
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:31591264 original size:40 final size:40
Alignment explanation
Indices: 31591164--31591335 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
31591154 GCTCCTCGTT
* * *
31591164 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
31591204 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
31591243 CGAATGCCTTCGGGA-ATTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACA-TAACCCGGATTTAGTAACTCGCA
* * * *
31591283 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
31591323 CAAATGCCTTCGG
1 CAAATGCCTTCGG
31591336 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
39 36 0.31
40 77 0.66
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:31591348 original size:80 final size:79
Alignment explanation
Indices: 31591164--31591388 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
31591154 GCTCCTCGTT
* * * * *
31591164 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
31591228 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * * *
31591243 CGAATGCCTTCGGGAATTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
31591308 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
31591323 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
31591387 GA
63 GA
31591389 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.32
80 68 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:31591397 original size:41 final size:41
Alignment explanation
Indices: 31591320--31591397 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
31591310 TTTGTATCTC
* * *
31591320 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
31591361 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
31591398 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:31598510 original size:40 final size:40
Alignment explanation
Indices: 31598410--31598581 Score: 197
Period size: 40 Copynumber: 4.3 Consensus size: 40
31598400 GCTCCTCGTT
* * * *
31598410 CAAATACCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
31598450 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
31598489 CGAATGCCTTCGGGA-ATTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACA-TAACCCGGATTTAGTAACTCGCA
* *** *
31598529 CAAAGGCCTTCGGGGTTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
31598569 CAAATGCCTTCGG
1 CAAATGCCTTCGG
31598582 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
39 35 0.30
40 77 0.66
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:31598594 original size:40 final size:41
Alignment explanation
Indices: 31598377--31598581 Score: 174
Period size: 40 Copynumber: 5.2 Consensus size: 41
31598367 AAATCACGTA
* * ** *
31598377 CCTTCGGGATTTAA-CCGG-ATATAGCT-CCTCGTTCAAATA
1 CCTTCGGGATTTAACCCGGAATTTAG-TATCTCGCACAAATG
** * * * *
31598416 CCTTCGGGACATAGCCCGG-TTTTAGTAACTCACAC-AATG
1 CCTTCGGGATTTAACCCGGAATTTAGTATCTCGCACAAATG
** * * *
31598455 CCTTCGGGACATAACCCGG-ATTTAATAACTCGCACGAATG
1 CCTTCGGGATTTAACCCGGAATTTAGTATCTCGCACAAATG
* *
31598495 CCTTCGGGAATTAACCCGG-ATTTAGTATCTCGCACAAAGG
1 CCTTCGGGATTTAACCCGGAATTTAGTATCTCGCACAAATG
*
31598535 CCTTCGGGGTTTAACCCGGAATTT-GTATCTCGCACAAATG
1 CCTTCGGGATTTAACCCGGAATTTAGTATCTCGCACAAATG
31598575 CCTTCGG
1 CCTTCGG
31598582 ATCTTAGTCC
Statistics
Matches: 139, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
39 46 0.33
40 89 0.64
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (41 bp):
CCTTCGGGATTTAACCCGGAATTTAGTATCTCGCACAAATG
Found at i:31598643 original size:41 final size:41
Alignment explanation
Indices: 31598566--31598643 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
31598556 TTTGTATCTC
* * *
31598566 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
31598607 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
31598644 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:31602695 original size:25 final size:25
Alignment explanation
Indices: 31602627--31602695 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
31602617 TCTATTTGTC
* *
31602627 AGCTTCCTGATTAATGGCTCTCTAG
1 AGCTTCCTGATTAATGGCTATCCAG
* *
31602652 AGCTT-TTCGA-TATACGGCTATCCAG
1 AGCTTCCT-GATTA-ATGGCTATCCAG
31602677 AGCTTCCTGATTAATGGCT
1 AGCTTCCTGATTAATGGCT
31602696 CTTACGAGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
24 3 0.09
25 28 0.82
26 3 0.09
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (25 bp):
AGCTTCCTGATTAATGGCTATCCAG
Found at i:31602742 original size:24 final size:24
Alignment explanation
Indices: 31602676--31602754 Score: 88
Period size: 24 Copynumber: 3.2 Consensus size: 24
31602666 CGGCTATCCA
*
31602676 GAGCTTCCTGATTAATGGCTCTTAC
1 GAGCTTCCTGATT-ATGGCTCTTAT
* * **
31602701 GAGCTACCCG-TTATTGGCTCACAT
1 GAGCTTCCTGATTA-TGGCTCTTAT
31602725 GAGCTTCCTGATTATGGCTCTTAT
1 GAGCTTCCTGATTATGGCTCTTAT
31602749 GAGCTT
1 GAGCTT
31602755 TATGTTATAT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
23 1 0.02
24 31 0.72
25 11 0.26
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (24 bp):
GAGCTTCCTGATTATGGCTCTTAT
Found at i:31602778 original size:25 final size:25
Alignment explanation
Indices: 31602758--31602817 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
31602748 TGAGCTTTAT
*
31602758 GTTATATAGCCCAGATAAGCTTCCC
1 GTTATATAGCCCAGATAAGCTTCAC
31602783 GTTATATAGCCCAGATAAGCTCTC-C
1 GTTATATAGCCCAGATAAGCT-TCAC
*
31602808 GTTACATAGC
1 GTTATATAGC
31602818 TCACATGAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
25 31 0.94
26 2 0.06
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (25 bp):
GTTATATAGCCCAGATAAGCTTCAC
Found at i:31602779 original size:49 final size:49
Alignment explanation
Indices: 31602677--31602781 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 49
31602667 GGCTATCCAG
* * * *
31602677 AGCTTCCTGATTAATGGCTCTTACGAGCTACCCGTTATTGGCTCACATG
1 AGCTTCCTGATTAATGGCTCTTACGAGCTACACGTTATTAGCCCACATA
* ** * *
31602726 AGCTTCCTGATT-ATGGCTCTTATGAGCTTTATGTTATATAGCCCAGATA
1 AGCTTCCTGATTAATGGCTCTTACGAGCTACACGTTAT-TAGCCCACATA
31602775 AGCTTCC
1 AGCTTCC
31602782 CGTTATATAG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
48 20 0.43
49 26 0.57
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (49 bp):
AGCTTCCTGATTAATGGCTCTTACGAGCTACACGTTATTAGCCCACATA
Found at i:31602828 original size:25 final size:24
Alignment explanation
Indices: 31602758--31602836 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
31602748 TGAGCTTTAT
* *
31602758 GTTATATAGCCCAGATAAGCTTCCC
1 GTTACATAGCCCACATAAGCTT-CC
* *
31602783 GTTATATAGCCCAGATAAGCTCTCC
1 GTTACATAGCCCACATAAGCT-TCC
* *
31602808 GTTACATAGCTCACATGAGCTTCC
1 GTTACATAGCCCACATAAGCTTCC
31602832 TGTTA
1 -GTTA
31602837 TACTGTTCGA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.06
25 44 0.92
26 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (24 bp):
GTTACATAGCCCACATAAGCTTCC
Found at i:31607486 original size:17 final size:19
Alignment explanation
Indices: 31607457--31607536 Score: 78
Period size: 17 Copynumber: 4.4 Consensus size: 19
31607447 CGTACTCCTT
*
31607457 TAAAAATATTAAAAAAATG
1 TAAAAATACTAAAAAAATG
31607476 -AAAAA-ACTAAAAAAATG
1 TAAAAATACTAAAAAAATG
*
31607493 TAAAAATACT-AAAACAT-
1 TAAAAATACTAAAAAAATG
* * *
31607510 TAATAATATGTAAAAAAATA
1 TAAAAATA-CTAAAAAAATG
31607530 TAAAAAT
1 TAAAAAT
31607537 TGTAATTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
17 18 0.36
18 17 0.34
19 9 0.18
20 6 0.12
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (19 bp):
TAAAAATACTAAAAAAATG
Found at i:31608317 original size:5 final size:5
Alignment explanation
Indices: 31608307--31608331 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
31608297 ATTAATGAAT
31608307 CAAAA CAAAA CAAAA CAAAA CAAAA
1 CAAAA CAAAA CAAAA CAAAA CAAAA
31608332 AAAGCATATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
CAAAA
Found at i:31609820 original size:888 final size:885
Alignment explanation
Indices: 31608087--31611006 Score: 4175
Period size: 890 Copynumber: 3.3 Consensus size: 885
31608077 AGTAATTAAT
* * *
31608087 ATTTTGATGTTTGGTTGCTTAATTAAGTAAAAAGAACTAAATCGTAAAAGTTGCAAAAGTTAAGC
1 ATTTTGATGTTTGGTTACTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAAGTTAAGC
* *
31608152 ACTATAGATTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATA-AGTAATTAG
66 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAATTAG
* * *
31608216 AACTATTTAGATTATGGTGGA-TGGTTAGTGGCTTTTAATTATGAAATTTTAATTGTTTTTAAAG
131 ACCTATTTAGATTATGGTGGACT-GTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAG
* * * *
31608280 GTTAAAATAGTAAATTAATTAATGAATCAAAACAAAACAAAACAAAACAAAAAAAGCATATGGTC
195 GTTAAAATAGTAAATTAA-T--T-AAT-AAATCAAAAGAAAACAAAA-AAGAAAAGCATGTGGTC
* ** * *
31608345 ATCGGCTGTGCAAGAATACTATTTTCAAATTGAATATTTTTCCAATAATTGGTATCAA-AAGTCA
254 ATCTGCTGTGCAAGAATACTATTTTCAAACCGGATATTTTTCCAACAATTGGTATCAAGAA-TCA
* *
31608409 GGTTGTGCTATGTTTATGGTGTAAAACGAGACTGAATCTTTCTCTTCATCTTGTTTGATTAATAT
318 GGTTGTGCTATGTTTATGGTGTAAAACGAGACTGAATCTCTCTCTTCATCTTATTTGATTAATAT
* *
31608474 TTGACAAGATGTGACATTTTTGTAGTTATTTGCATGTTTAAGGGAATGTATGTGAATGAATGCAA
383 TTGATAAGATGTGACATTCTTGTAGTTA-TTGCATGTTTAAGGGAATGTATGTGAATGAATGCAA
* ** * *
31608539 TATTATATATTTGTTATATAATAATTAATT-TTTTGCCAAGGTTGTGGTTCTTAGGAAATAAACC
447 TATTATATATTTGTTATATAAT-TTTTTTTCTTTTTCCAAGGTTGTGGTTCTTAGGAAATAGACC
* *
31608603 GTATACTATCATCTCCACATAGAATTATTTTTTATTTTTGGAATTCTTGTGAGCTAGAAACGGAC
511 GTATACTATCATCTCCACATAGAATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGAC
* * * *
31608668 GTAGGACATAAATGTAATTTTTCCAAAAGGGAGCCCATAACGAGGAAAAGATGGAGCGATGACAG
576 GTAGGACATAAATGTAATTTTTCCAAAA-GGAGTCCATAATGAGGAGAAGATGGAGCGATGACGG
* * * * *
31608733 TCGAAGACACAAGGAATGCCTTATGATGAAAAACTATGTAATTTTTTATTTTTCATTTATTTTCT
640 TCAAAGATACAAGGAATGCCTTGTGATGAAAAACTGTGTAA-TTTTT-TTTTTCATTTATTTTAT
* * * * *
31608798 AAAAATAGAACG-ATAGAGACATTGGCTGACAATTTTATTTAGTTACCCATTTGTAACAGCCCGT
703 AAAAATAGAA-GAATAGAGACATTGGTTGACAATTTTATTTTGTTACCCATCTGTAACAACCCTT
* * * * * * **
31608862 TTTCAGTGGTATCAAAAATAGTGATTTTGGGACCATGATTTCGATCAATGAGTCAGTACTATGCT
767 TTTCAGTGGTATCAAAAATAATGGTTTTGGGACCACGATTTCGATCAGTGAGTTAGTATTATATT
* * *
31608927 ATTTATTTAATATTTATGAGTCTATTATAGTGTCGTAAAAAACTTTGGTTTAAAA
832 ATTTATTTAATATTTATGAGTCTATTA-AGTGTCATAATAAAGTTTGGTTTAAAA
* * *
31608982 ATTTTGATGTTTGGTTGCTTAATTAAGT-AAAAGGTCTAAATCATAAAAGCTGCAAAAGTTAAGC
1 ATTTTGATGTTTGGTTACTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAAGTTAAGC
*
31609046 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGGGATTTATATAGTAATTAG
66 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAATTAG
31609111 ACCTATTTAGATTATGGTGGACTGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
131 ACCTATTTAGATTATGGTGGACTGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
*
31609176 TT-AAAGAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTGCT
196 TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTGCT
*
31609240 ATGCAAGAATACTATTTTCAAACCGGATATTTTTCCAACAATTGGTATCAAGAATCAGGTTGTGC
261 GTGCAAGAATACTATTTTCAAACCGGATATTTTTCCAACAATTGGTATCAAGAATCAGGTTGTGC
* * * * *
31609305 TATATTTATGGTGTAAAATGAGACTGGACCTCTCTCTTCATTTTATTTGATTAATATTTGATAAG
326 TATGTTTATGGTGTAAAACGAGACTGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAG
* * *
31609370 ATGTGATATTCTTGTAGTTATTGCATGTTTAAAGGAATGTATGTGAATGAATGCAATATTATATG
391 ATGTGACATTCTTGTAGTTATTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATATA
* * *
31609435 TTTGTTATATAATTTTTTTTTCTTTTTCCAAGTTTGTGTTTCTTAGGAAATAGACCATATACTAT
456 TTTGTTATATAA-TTTTTTTTCTTTTTCCAAGGTTGTGGTTCTTAGGAAATAGACCGTATACTAT
** * *
31609500 CATCTCCGTATAGGATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACATAGGACAT
520 CATCTCCACATAGAATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACGTAGGACAT
* *
31609565 AAATGTAATTTTTCCAAATAGGAGTCCATAATGAGGAGAAGATGGAGCAATGGCGGTCAAAGATA
585 AAATGTAATTTTTCCAAA-AGGAGTCCATAATGAGGAGAAGATGGAGCGATGACGGTCAAAGATA
* *
31609630 CAAGGAATGCCTTGTGATGAAAAACTGCGTAATTTTTGTTTTTCATTTATTTTATAAAAAGAGAA
649 CAAGGAATGCCTTGTGATGAAAAACTGTGTAATTTTT-TTTTTCATTTATTTTATAAAAATAGAA
* *
31609695 GAATAGAGACATTGGTTGACAATTTTATTTTGTTACCCATCTATAACAACCCTTTTTCACTGGTA
713 GAATAGAGACATTGGTTGACAATTTTATTTTGTTACCCATCTGTAACAACCCTTTTTCAGTGGTA
*
31609760 TCAAAAACAATGGTTTTGGGGACCACGATTTCGATCAGTGAGTTAGTATTATATTATTTATTTAA
778 TCAAAAATAATGGTTTT-GGGACCACGATTTCGATCAGTGAGTTAGTATTATATTATTTATTTAA
* * *
31609825 TATTTATGAGTATACTAAAGTGTCTTAATAAAGTTTGGTTTAAAAA
842 TATTTATGAGTCTA-TTAAGTGTCATAATAAAGTTTGGTTT-AAAA
* * * *
31609871 ATTTTGATTTTTGGTTATTTAATTAAGTAAAAAGGACGAAATCGTAAAAGCTGCAAAAGTTAAGT
1 ATTTTGATGTTTGGTTACTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAAGTTAAGC
* * *
31609936 ACTACAAGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAATTGG
66 ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAATTAG
*
31610001 ACCTATTTAGATTATGGTGGAC-GATTAGTGGGTTTTAATTCTGAAATTTTAGTTGTTTTTAAAG
131 ACCTATTTAGATTATGGTGGACTG-TTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAG
* * * * *
31610065 GTTTAAATAGTAAATTAATTAATAAATCAAAAGAAAA-AAAATAGAAAAGTATGTGGTCTTCTAC
195 GTTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTGC
* * * *
31610129 TGTGCCAGAATA-TCGTTTTCGAACCGGATATTTTTCCAACAATTGGTATCAAGAGTCAGGTTGT
260 TGTGCAAGAATACT-ATTTTCAAACCGGATATTTTTCCAACAATTGGTATCAAGAATCAGGTTGT
*
31610193 GCTATGTTTATGGTGTAAAACGAGA-TCGAATCTCTCTTTTCATCTTATTTGATTAATATTTGAT
324 GCTATGTTTATGGTGTAAAACGAGACT-GAATCTCTCTCTTCATCTTATTTGATTAATATTTGAT
* * *
31610257 AATATGTTACATTCTTGTAGTTATTCGCATGTTTAAGGGAATGTATGTGAATGAATGTAATATTA
388 AAGATGTGACATTCTTGTAGTTATT-GCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTA
* * * * *
31610322 TATATTTTTTATATAA-TTATTATCTTTTTATCAAGGTTGTGGTTCGTAGGAAATAGACCGTATA
452 TATATTTGTTATATAATTTTTTTTCTTTTT-CCAAGGTTGTGGTTCTTAGGAAATAGACCGTATA
* * *
31610386 CTATAATCTCCACATAGTATTATTTTTTATTTTTTAAATTCTTGTGAGCTAGAAACAGACGTAGG
516 CTATCATCTCCACATAGAATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACGTAGG
* * * *
31610451 ACATAAATGTAATTTTTCCAAAAAGAAGTTCATGATGAGGAGAAGATGGAGCGATGACGATCAAA
581 ACATAAATGTAATTTTTCC-AAAAGGAGTCCATAATGAGGAGAAGATGGAGCGATGACGGTCAAA
* * * * *
31610516 GATATAAGCAATGCCTTGTGATGAAAAAATGTTTAA---TTTTTTTCATTTATTTTATGAAAATA
645 GATACAAGGAATGCCTTGTGATGAAAAACTGTGTAATTTTTTTTTTCATTTATTTTATAAAAATA
* * * *
31610578 GAAAAATAGAAACATT-ATCTGACAATTTTATTTTGTTACCAATCTGTAACAACCCGTTTTTCAG
710 GAAGAATAGAGACATTGGT-TGACAATTTTATTTTGTTACCCATCTGTAACAACCC-TTTTTCAG
* * * * *
31610642 TGGTATAAAAAATAATGGTTTCGAGATCACAATTTCGATCAGTGAGTTAGTATTATATTATTTAT
773 TGGTATCAAAAATAATGGTTTTGGGACCACGATTTCGATCAGTGAGTTAGTATTATATTATTTAT
* *
31610707 TTAATATTTATGAGTCTATTAATGTGTCATAATAAAGTTTGATTGAAAA
838 TTAATATTTATGAGTCTATTAA-GTGTCATAATAAAGTTTGGTTTAAAA
* * * *
31610756 ATTTTGA-GTTTTTGTTACTTAATAAAGTAAAAAAAAGACTAAATCGTAAAAGCTACAAAAGTTA
1 ATTTTGATG-TTTGGTTACTTAATTAAGT--AAAAAGGACTAAATCGTAAAAGCTGCAAAAGTTA
31610820 AGCACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAAT
63 AGCACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAAT
*
31610885 TAGACCTATTTAGATTATGGTGGACTGTTAGTGGGTTTTAATTATGAACTTTTAGTT-TTTTTAA
128 TAGACCTATTTAGATTATGGTGGACTGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAA
31610949 AGGTTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTG
193 AGGTTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTG
31611007 ATCTTTCATT
Statistics
Matches: 1825, Mismatches: 174, Indels: 60
0.89 0.08 0.03
Matches are distributed among these distances:
885 31 0.02
886 192 0.11
887 348 0.19
888 410 0.22
889 65 0.04
890 492 0.27
891 87 0.05
893 1 0.00
894 99 0.05
895 99 0.05
896 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (885 bp):
ATTTTGATGTTTGGTTACTTAATTAAGTAAAAAGGACTAAATCGTAAAAGCTGCAAAAGTTAAGC
ACTATAGGTTTATTTGTATTAAATAGATATAAAATCATGAATTAAGAGATTTATATAGTAATTAG
ACCTATTTAGATTATGGTGGACTGTTAGTGGGTTTTAATTATGAAATTTTAGTTGTTTTTAAAGG
TTAAAATAGTAAATTAATTAATAAATCAAAAGAAAACAAAAAAGAAAAGCATGTGGTCATCTGCT
GTGCAAGAATACTATTTTCAAACCGGATATTTTTCCAACAATTGGTATCAAGAATCAGGTTGTGC
TATGTTTATGGTGTAAAACGAGACTGAATCTCTCTCTTCATCTTATTTGATTAATATTTGATAAG
ATGTGACATTCTTGTAGTTATTGCATGTTTAAGGGAATGTATGTGAATGAATGCAATATTATATA
TTTGTTATATAATTTTTTTTCTTTTTCCAAGGTTGTGGTTCTTAGGAAATAGACCGTATACTATC
ATCTCCACATAGAATTATTTTTTATTTTTTGAATTCTTGTGAGCTAGAAACAGACGTAGGACATA
AATGTAATTTTTCCAAAAGGAGTCCATAATGAGGAGAAGATGGAGCGATGACGGTCAAAGATACA
AGGAATGCCTTGTGATGAAAAACTGTGTAATTTTTTTTTTCATTTATTTTATAAAAATAGAAGAA
TAGAGACATTGGTTGACAATTTTATTTTGTTACCCATCTGTAACAACCCTTTTTCAGTGGTATCA
AAAATAATGGTTTTGGGACCACGATTTCGATCAGTGAGTTAGTATTATATTATTTATTTAATATT
TATGAGTCTATTAAGTGTCATAATAAAGTTTGGTTTAAAA
Found at i:31621107 original size:55 final size:54
Alignment explanation
Indices: 31621020--31621235 Score: 242
Period size: 55 Copynumber: 4.0 Consensus size: 54
31621010 ATTAGGGTTT
31621020 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAA-GTTTCATAAGGC
* ** *
31621075 AAGGATATCATGTAAGACCATTTC-AGGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGG-CATGGCATTGGTAAGTTTC-ATAAGGC
* * * *
31621130 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCGTAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
* * * * *
31621183 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGG
31621236 ATACTACGTA
Statistics
Matches: 133, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 42 0.32
54 20 0.15
55 60 0.45
56 7 0.05
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
Found at i:31621226 original size:108 final size:110
Alignment explanation
Indices: 31621027--31621229 Score: 306
Period size: 108 Copynumber: 1.9 Consensus size: 110
31621017 TTTAAGGATA
* *
31621027 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
31621092 CCATTTCAGGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAGGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
*
31621137 CCATGTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCGTAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
31621199 ACCATGTC-GAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAG-GACATGGCAATGATAAGTTTC
31621230 AAAAGGATAC
Statistics
Matches: 85, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
107 4 0.05
108 48 0.56
109 6 0.07
110 27 0.32
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAGGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:31623567 original size:22 final size:22
Alignment explanation
Indices: 31623541--31623583 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
31623531 ATAGGGACAT
31623541 TTGTAAAGTGTTGAA-AAATGTG
1 TTGTAAAGTG-TGAATAAATGTG
31623563 TTGTAAAGTGTGAATAAATGT
1 TTGTAAAGTGTGAATAAATGT
31623584 AAAATGTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (22 bp):
TTGTAAAGTGTGAATAAATGTG
Found at i:31629991 original size:47 final size:47
Alignment explanation
Indices: 31629932--31630526 Score: 1010
Period size: 47 Copynumber: 12.6 Consensus size: 47
31629922 TATTTGAATA
31629932 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31629979 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
31630026 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630073 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630120 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
31630167 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630214 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630261 AATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630308 AATGTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630355 AATGTGAAAGGGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
31630406 AATGTGAGAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
31630453 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
31630500 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
31630527 TCCCGAAGGG
Statistics
Matches: 518, Mismatches: 26, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 473 0.91
49 2 0.00
51 43 0.08
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:31630701 original size:37 final size:37
Alignment explanation
Indices: 31630645--31630723 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
31630635 CCGAGCTCTA
* *
31630645 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
31630682 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
31630719 AAGAC
1 AAGAC
31630724 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:31638058 original size:14 final size:14
Alignment explanation
Indices: 31638041--31638069 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31638031 TTAACTTGAC
31638041 ATCTAAATTTAAAT
1 ATCTAAATTTAAAT
31638055 ATCTAAATTTAAAT
1 ATCTAAATTTAAAT
31638069 A
1 A
31638070 GCTTACTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATCTAAATTTAAAT
Found at i:31647979 original size:58 final size:59
Alignment explanation
Indices: 31647912--31648027 Score: 207
Period size: 58 Copynumber: 2.0 Consensus size: 59
31647902 CCACTGCTTT
31647912 TTTTTCTGTTTCAAGTGATATTGAATCAGGGGTTAAAGA-AACATGCAATATGAAAACC
1 TTTTTCTGTTTCAAGTGATATTGAATCAGGGGTTAAAGAGAACATGCAATATGAAAACC
* *
31647970 TTTTTCTGTTTCAGGTGATATTGAATCAGGGGTTAAAGAGAACATGCAATATGGAAAC
1 TTTTTCTGTTTCAAGTGATATTGAATCAGGGGTTAAAGAGAACATGCAATATGAAAAC
31648028 TTCGATAGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 38 0.69
59 17 0.31
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (59 bp):
TTTTTCTGTTTCAAGTGATATTGAATCAGGGGTTAAAGAGAACATGCAATATGAAAACC
Found at i:31651812 original size:20 final size:20
Alignment explanation
Indices: 31651789--31651845 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
31651779 GGGTTAAGAT
*
31651789 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
31651809 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
*
31651829 TGAGCTGGAAATGAGCT
1 TGAGCT-GAATTGAGCT
31651846 AAACGGAGCT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 22 0.73
21 8 0.27
ACGTcount: A:0.25, C:0.12, G:0.35, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:31653561 original size:48 final size:48
Alignment explanation
Indices: 31653506--31653611 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
31653496 TTGTCTTTTC
*
31653506 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
31653554 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
31653602 TTTCTTTTTC
1 TTTCTTTTTC
31653612 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:31656254 original size:20 final size:20
Alignment explanation
Indices: 31656231--31656277 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
31656221 GGGTTAAGAT
*
31656231 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
31656251 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
31656271 TGAGCTG
1 TGAGCTG
31656278 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:31658787 original size:7 final size:7
Alignment explanation
Indices: 31658775--31658800 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
31658765 TTATATTATA
31658775 TTAAAAT
1 TTAAAAT
31658782 TTAAAAT
1 TTAAAAT
31658789 TTAAAAT
1 TTAAAAT
31658796 TTAAA
1 TTAAA
31658801 GTTTTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TTAAAAT
Found at i:31660359 original size:8 final size:8
Alignment explanation
Indices: 31660346--31660400 Score: 65
Period size: 8 Copynumber: 6.5 Consensus size: 8
31660336 AATTTCCAAT
31660346 TATTTTTA
1 TATTTTTA
31660354 TATTTTTA
1 TATTTTTA
**
31660362 TACTTTCCAA
1 TA-TTT-TTA
31660372 TTATTTTTA
1 -TATTTTTA
31660381 TATTTTTA
1 TATTTTTA
31660389 TATTTTTA
1 TATTTTTA
31660397 TATT
1 TATT
31660401 CTAAATTAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 30 0.75
9 4 0.10
10 4 0.10
11 2 0.05
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.69
Consensus pattern (8 bp):
TATTTTTA
Found at i:31660368 original size:27 final size:27
Alignment explanation
Indices: 31660325--31660390 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
31660315 ACTAGTATAC
31660325 ATATTTGTTATAATTTCCAATTATTTTT
1 ATATTT-TTATAATTTCCAATTATTTTT
*
31660353 ATATTTTTATACTTTCCAATTATTTTT
1 ATATTTTTATAATTTCCAATTATTTTT
31660380 ATATTTTTATA
1 ATATTTTTATA
31660391 TTTTTATATT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 31 0.84
28 6 0.16
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.62
Consensus pattern (27 bp):
ATATTTTTATAATTTCCAATTATTTTT
Found at i:31660783 original size:20 final size:20
Alignment explanation
Indices: 31660755--31660797 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
31660745 ATCAGTATTC
31660755 TTATACTGAATTTTAGGATT
1 TTATACTGAATTTTAGGATT
* *
31660775 TTATCCTGAATTTTAGTATT
1 TTATACTGAATTTTAGGATT
31660795 TTA
1 TTA
31660798 ATTTGGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.12, T:0.53
Consensus pattern (20 bp):
TTATACTGAATTTTAGGATT
Found at i:31661520 original size:29 final size:31
Alignment explanation
Indices: 31661487--31661555 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
31661477 TTTTTTTTAG
*
31661487 CTTTTAAGGGTCC-AAAATTTTTTT-ACCAA
1 CTTTTAAGGGACCAAAAATTTTTTTCACCAA
* *
31661516 TTTTTAAGGGACCTAAAAATTTTTTTCTCCAA
1 CTTTTAAGGGACC-AAAAATTTTTTTCACCAA
31661548 CTTTTAAG
1 CTTTTAAG
31661556 AACCTTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 11 0.33
31 11 0.33
32 11 0.33
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.43
Consensus pattern (31 bp):
CTTTTAAGGGACCAAAAATTTTTTTCACCAA
Found at i:31661553 original size:32 final size:29
Alignment explanation
Indices: 31661454--31661555 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
31661444 AAAAAAATAT
* * **
31661454 CAACTTTTAAGAGGTCCCAAATTTTTTTTT
1 CAACTTTTAAG-GGACCAAAATTTTTTTAC
* * *
31661484 TAGCTTTTAAGGGTCCAAAATTTTTTTAC
1 CAACTTTTAAGGGACCAAAATTTTTTTAC
* *
31661513 CAATTTTTAAGGGACCTAAAAATTTTTTTCTC
1 CAACTTTTAAGGGACC--AAAATTTTTTT-AC
31661545 CAACTTTTAAG
1 CAACTTTTAAG
31661556 AACCTTAAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
29 27 0.47
30 9 0.16
31 11 0.19
32 11 0.19
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (29 bp):
CAACTTTTAAGGGACCAAAATTTTTTTAC
Found at i:31661565 original size:32 final size:31
Alignment explanation
Indices: 31661500--31661565 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
31661490 TTAAGGGTCC
* *
31661500 AAAATTTTTTTACCAATTTTTAAGGGACCTA
1 AAAATTTTTTTACCAACTTTTAAGGAACCTA
* *
31661531 AAAATTTTTTTCTCCAACTTTTAA-GAACCTT
1 AAAATTTTTTT-ACCAACTTTTAAGGAACCTA
31661562 AAAA
1 AAAA
31661566 CCCTATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (31 bp):
AAAATTTTTTTACCAACTTTTAAGGAACCTA
Found at i:31661813 original size:22 final size:23
Alignment explanation
Indices: 31661762--31661813 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
31661752 TATTTAAAAG
31661762 TAATTACATATCATATATAATTT
1 TAATTACATATCATATATAATTT
*
31661785 TATATTA-ATATTA-ATATAATTT
1 TA-ATTACATATCATATATAATTT
31661807 ATAATTA
1 -TAATTA
31661814 GTTTTTAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 13 0.50
23 9 0.35
24 4 0.15
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (23 bp):
TAATTACATATCATATATAATTT
Found at i:31662866 original size:20 final size:20
Alignment explanation
Indices: 31662841--31662910 Score: 104
Period size: 20 Copynumber: 3.5 Consensus size: 20
31662831 AACTTTTGAG
31662841 ACTTCTACCCATATAGGTCC
1 ACTTCTACCCATATAGGTCC
* * *
31662861 ACTTCTATCCATACAAGTCC
1 ACTTCTACCCATATAGGTCC
*
31662881 ACTTTTACCCATATAGGTCC
1 ACTTCTACCCATATAGGTCC
31662901 ACTTCTACCC
1 ACTTCTACCC
31662911 TACATCTTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.26, C:0.36, G:0.07, T:0.31
Consensus pattern (20 bp):
ACTTCTACCCATATAGGTCC
Found at i:31668884 original size:25 final size:24
Alignment explanation
Indices: 31668856--31668925 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
31668846 AATTTTTCTC
31668856 CTAAATTTTAATTTTATTCAATTAT
1 CTAAATTTTAA-TTTATTCAATTAT
* *
31668881 CTAATTTCTTAATTTATTGAATTAT
1 CTAAATT-TTAATTTATTCAATTAT
31668906 -TAATATTTT--TTTATT-AATTA
1 CTAA-ATTTTAATTTATTCAATTA
31668926 AAATTTTGAG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 5 0.12
22 6 0.15
24 5 0.12
25 20 0.50
26 4 0.10
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (24 bp):
CTAAATTTTAATTTATTCAATTAT
Found at i:31670201 original size:24 final size:25
Alignment explanation
Indices: 31670174--31670227 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
31670164 GCAGCAGCTA
* * *
31670174 ATTAATT-TGTTCTAATCTAGACAC
1 ATTAATTATGTCCTAAACCAGACAC
*
31670198 ATTAATTATGTCCTAAACCAGACAT
1 ATTAATTATGTCCTAAACCAGACAC
31670223 ATTAA
1 ATTAA
31670228 AACACGTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (25 bp):
ATTAATTATGTCCTAAACCAGACAC
Found at i:31673607 original size:42 final size:42
Alignment explanation
Indices: 31673556--31673833 Score: 203
Period size: 43 Copynumber: 6.5 Consensus size: 42
31673546 CGATGCCTCA
* *
31673556 GTCCCAGACAGGGTCTTACACGAAATTAGATACAATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATTAGATACGATGCCGAT
* *
31673598 GTCCCAGACATGGTCTTATACGTAAATTTCA-AT-CGAGGCCTG-T
1 GTCCCAGACATGGTCTTACACG-AAA-TT-AGATACGATGCC-GAT
* * * * * **
31673641 GTCCTAGATAGGGTCTCACACGAAATCAGATACGATGCTAAT
1 GTCCCAGACATGGTCTTACACGAAATTAGATACGATGCCGAT
* * *
31673683 GTCCCAAACATGGTCTTATACGTAAATCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACATGGTCTTACACG-AAAT-T-AGATACGATGCC-GAT
* *
31673726 GTCCCAGGCATGGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATTAGATACGATGCCGAT
* * * * *
31673768 GTCCCAGACATGGTCTTATACATAAATCTCA-AT-CGAGGGCTAT
1 GTCCCAGACATGGTCTTACAC-GAAAT-T-AGATACGATGCCGAT
*
31673811 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
31673834 TATCTCAGAC
Statistics
Matches: 181, Mismatches: 38, Indels: 34
0.72 0.15 0.13
Matches are distributed among these distances:
40 2 0.01
41 6 0.03
42 76 0.42
43 85 0.47
44 9 0.05
45 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATTAGATACGATGCCGAT
Found at i:31673654 original size:85 final size:85
Alignment explanation
Indices: 31673504--31673833 Score: 421
Period size: 85 Copynumber: 3.9 Consensus size: 85
31673494 AATCAAGTAT
* * * * **
31673504 AATGCCAATGTCCCAGACGTGGTCTTACATGT-AA-CTCATTATCGATGCCTCAGTCCCAGACAG
1 AATGCCAATGTCCCAGACATGGTCTTATACGTAAATCTCA--ATCGAGGCCTGTGTCCCAGACAG
*
31673567 GGTCTTACACGAAATTAGATAC
64 GGTCTTACACGAAATCAGATAC
* * * *
31673589 AATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATCGAGGCCTGTGTCCTAGATAGGG
1 AATGCCAATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGACAGGG
*
31673654 TCTCACACGAAATCAGATAC
66 TCTTACACGAAATCAGATAC
* * * * *
31673674 GATGCTAATGTCCCAAACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGGCATGG
1 AATGCCAATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGACAGGG
31673739 TCTTACACGAAATCAGATAC
66 TCTTACACGAAATCAGATAC
* * * * * *
31673759 GATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGGCTATGTCCCAGACACGG
1 AATGCCAATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGACAGGG
31673824 TCTTACACGA
66 TCTTACACGA
31673834 TATCTCAGAC
Statistics
Matches: 213, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
85 208 0.98
86 2 0.01
87 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
AATGCCAATGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTGTGTCCCAGACAGGG
TCTTACACGAAATCAGATAC
Found at i:31679129 original size:27 final size:27
Alignment explanation
Indices: 31679099--31679276 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
31679089 ATATTGAGTC
* * * *
31679099 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31679126 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31679153 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
31679181 AGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31679208 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31679235 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31679262 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31679277 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31679238 original size:82 final size:81
Alignment explanation
Indices: 31679120--31679275 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
31679110 TGCTATATAA
* *
31679120 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTAGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TAGCA
31679185 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
31679202 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATAGCA
31679266 CACTTAGTGC
65 CACTTAGTGC
31679276 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATAGCAC
ACTTAGTGCCGCATGG
Found at i:31679773 original size:12 final size:12
Alignment explanation
Indices: 31679756--31679782 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
31679746 ATGGCATACT
31679756 TATGTATATATA
1 TATGTATATATA
31679768 TATGTATATATA
1 TATGTATATATA
31679780 TAT
1 TAT
31679783 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:31687238 original size:27 final size:27
Alignment explanation
Indices: 31687208--31687385 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31687198 ATATTGAGTC
* * * *
31687208 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
31687235 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31687262 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
31687290 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
31687317 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
31687344 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
31687371 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
31687386 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:31687347 original size:82 final size:81
Alignment explanation
Indices: 31687229--31687384 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31687219 TGCTATATAA
* *
31687229 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
31687294 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
31687311 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
31687375 CACTTAGTGC
65 CACTTAGTGC
31687385 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:31689451 original size:27 final size:27
Alignment explanation
Indices: 31689420--31689597 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
31689410 TAAATTGTAC
31689420 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
31689447 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31689473 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31689501 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31689529 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31689556 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31689583 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
31689598 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31689534 original size:82 final size:81
Alignment explanation
Indices: 31689421--31689576 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
31689411 AAATTGTACA
* *
31689421 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
31689485 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
31689502 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
31689567 TGCGAGTTGA
65 TGCGAATTGA
31689577 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:31689588 original size:82 final size:81
Alignment explanation
Indices: 31689417--31689597 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
31689407 GATTAAATTG
* *
31689417 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
31689482 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
31689498 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
31689562 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
31689580 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
31689598 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:31697406 original size:27 final size:27
Alignment explanation
Indices: 31697315--31697490 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
31697305 TTAAATGTAC
31697315 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
** *
31697342 -GCACTAAGTGTGC-AAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31697366 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
31697394 GGCACTAAGTGTGCGAGTTTGACTA-GT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
31697421 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
31697448 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
31697475 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
31697491 CTCAATATAC
Statistics
Matches: 127, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
25 8 0.06
26 33 0.26
27 80 0.63
28 6 0.05
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:31697486 original size:81 final size:79
Alignment explanation
Indices: 31697312--31697490 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 79
31697302 GGATTAAATG
*
31697312 TACAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCAAATGAATATGATGCACTAAGT
1 TACAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCAAATGAATACGATGCACTAAGT
31697377 GTGCGAATTGACCA
66 GTGCGAATTGACCA
* * ** *
31697391 TGCGGCACTAAGTGTGCGAGTTTGACTA-GTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGT-GCACTAAGTGTGC-AAATGAATACGAT-GCACT
* **
31697454 AAGTGTGCGAGTTGATTA
62 AAGTGTGCGAATTGACCA
* *
31697472 TATAGCACTGAGTGTGCGA
1 TACAGCACTAAGTGTGCGA
31697491 CTCAATATAC
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
79 19 0.23
80 22 0.27
81 42 0.51
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (79 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCAAATGAATACGATGCACTAAGT
GTGCGAATTGACCA
Found at i:31714400 original size:27 final size:26
Alignment explanation
Indices: 31714370--31714546 Score: 120
Period size: 27 Copynumber: 6.5 Consensus size: 26
31714360 AAATTGTACA
* *
31714370 GCACTAAGTGTGCGATTCTACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
31714397 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* * **
31714424 GCACTAAGTGTGCGAATCGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
31714451 GCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGC--GATTGACTATGTT
* * *
31714479 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * * *
31714506 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
31714533 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
31714547 GGCTCAATAT
Statistics
Matches: 119, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
26 1 0.01
27 95 0.80
28 22 0.18
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:31714492 original size:55 final size:54
Alignment explanation
Indices: 31714397--31714546 Score: 140
Period size: 55 Copynumber: 2.8 Consensus size: 54
31714387 CTACTTTGTT
* ** * *
31714397 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATCGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATCGACCACGCG
* * * * * ** *
31714451 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATCGACCACGCG
* *
31714506 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
31714547 GGCTCAATAT
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 37 0.47
55 41 0.53
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATCGACCACGCG
Found at i:31714510 original size:82 final size:81
Alignment explanation
Indices: 31714370--31714520 Score: 189
Period size: 82 Copynumber: 1.9 Consensus size: 81
31714360 AAATTGTACA
* * * *
31714370 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
31714435 GCGAATCGACCATGCG
66 GCGAATCGACCATGCG
* ** *
31714451 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
31714514 TGTGCGA
63 TGTGCGA
31714521 GTTGATTATA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
81 15 0.25
82 44 0.75
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATCGACCATGCG
Found at i:31719341 original size:40 final size:40
Alignment explanation
Indices: 31719294--31719437 Score: 252
Period size: 40 Copynumber: 3.6 Consensus size: 40
31719284 TGACTAATTT
31719294 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
**
31719334 CAAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
31719374 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
31719414 CGGGCTAAGTCCCGAAGGTATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
31719438 AGCAAGTAGT
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:31719452 original size:80 final size:80
Alignment explanation
Indices: 31719294--31719469 Score: 248
Period size: 80 Copynumber: 2.2 Consensus size: 80
31719284 TGACTAATTT
* *
31719294 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCAAGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAAGCTAAGTCCCGAAGGCATTTGA
*
31719359 GCGAGTTACTATATC
66 GCAAGTTACTATATC
** *
31719374 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGTATTTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAAGCTAAGTCCCGAAGGCATTTGA
* *
31719439 GCAAG-TAGTTATATT
66 GCAAGTTA-CTATATC
*
31719454 C-GGCTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAG
31719470 ATGCTTGGGT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 16 0.19
80 70 0.81
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCAAGCTAAGTCCCGAAGGCATTTGA
GCAAGTTACTATATC
Found at i:31720869 original size:29 final size:28
Alignment explanation
Indices: 31720824--31720891 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
31720814 GGGTGTTACA
* **
31720824 TAATGGGCCAAACGAATGTGATTTGGGCC
1 TAATGGGCCATACGAATAAG-TTTGGGCC
* *
31720853 TAATGGGCCATATGAATAAGTTTGGGCT
1 TAATGGGCCATACGAATAAGTTTGGGCC
*
31720881 TAGTGGGCCAT
1 TAATGGGCCAT
31720892 GTGCATGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 17 0.52
29 16 0.48
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
TAATGGGCCATACGAATAAGTTTGGGCC
Found at i:31741792 original size:44 final size:44
Alignment explanation
Indices: 31741723--31741925 Score: 232
Period size: 44 Copynumber: 4.6 Consensus size: 44
31741713 TGTGTTATCG
* *
31741723 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * *
31741767 TGTAAGACCACATCTAGGACATTGGCATCGACTTATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * * * **
31741811 TGTAAGACCATGTCTTGGACCTTGGCATCGACGTATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
* * *
31741855 TGTAAGACCACGTCTGGGACAGTGGTATCGA-TATTTGA-TTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGACT-TATGATTTACA
*
31741898 TGTAAGACCACGAT-TGGGACGTTGGCAT
1 TGTAAGACCACG-TCTGGGACATTGGCAT
31741926 TGTACTAGCT
Statistics
Matches: 134, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
43 26 0.19
44 108 0.81
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTACA
Found at i:31742798 original size:21 final size:23
Alignment explanation
Indices: 31742753--31742801 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
31742743 ATGATGTCTG
*
31742753 ATTTGGTTGTAAAATGGTTGAGA
1 ATTTGGTTATAAAATGGTTGAGA
*
31742776 ATTTGG-TATAAAAT-GTTGTGA
1 ATTTGGTTATAAAATGGTTGAGA
31742797 ATTTG
1 ATTTG
31742802 TTGCTTGTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 6 0.25
ACGTcount: A:0.31, C:0.00, G:0.27, T:0.43
Consensus pattern (23 bp):
ATTTGGTTATAAAATGGTTGAGA
Found at i:31749533 original size:43 final size:43
Alignment explanation
Indices: 31749408--31749562 Score: 190
Period size: 43 Copynumber: 3.6 Consensus size: 43
31749398 ATGTGTTACC
* * * *
31749408 GTGTAAGACCACGTCTAGGACGTTGGAATCGACATATGATTTAT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTT-T
*
31749452 GTGTAAGACCACGTCTGGGACGTTGGCATCG-TACTTGATTTT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTT
**
31749494 GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTTT
*
31749537 ATGTAAGACCACGTCTGGGACGTTGG
1 GTGTAAGACCACGTCTGGGACGTTGG
31749563 AATTGTACGA
Statistics
Matches: 97, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
41 1 0.01
42 29 0.30
43 37 0.38
44 30 0.31
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTT
Done.