Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104534465
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.31
Warning! 4800000 characters in sequence are not A, C, G, or T
File 153 of 319
Found at i:50735635 original size:39 final size:40
Alignment explanation
Indices: 50735583--50735729 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
50735573 GCAAACACAT
* *
50735583 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
50735623 TTGCCTTC-GGTCTTAGCCCGGATATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
* *
50735662 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCGTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
50735702 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
50735730 TCCAATGCTC
Statistics
Matches: 102, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
39 37 0.36
40 65 0.64
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAA
Found at i:50735683 original size:79 final size:80
Alignment explanation
Indices: 50735583--50735729 Score: 251
Period size: 79 Copynumber: 1.9 Consensus size: 80
50735573 GCAAACACAT
*
50735583 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTC-GGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
50735647 TATCAACTTGCATAA
66 TATCAACTTGCATAA
* * *
50735662 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCGTAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
50735727 TAT
66 TAT
50735730 TCCAATGCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 44 0.70
80 19 0.30
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCAACTTGCATAA
Found at i:50740517 original size:54 final size:54
Alignment explanation
Indices: 50740458--50740571 Score: 201
Period size: 54 Copynumber: 2.1 Consensus size: 54
50740448 TTAGATTGAT
*
50740458 AAATGACTGTTTTGCCCTTATATGGTAAAATGCTTGTTTTCCCCTCATAAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
* *
50740512 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTCATGAGGTA
1 AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
50740566 AAATGA
1 AAATGA
50740572 TATGGTAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (54 bp):
AAATGACTGTTTTGCCCTTATATGGTAAAATGATTGTTTTCCCCTCATAAGGTA
Found at i:50740572 original size:27 final size:27
Alignment explanation
Indices: 50740458--50740572 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
50740448 TTAGATTGAT
* *
50740458 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* * *
50740485 AAATGCTTGTTTTCCCCTCATAAGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
* *
50740512 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGATTGTTTTGCCCTCATATGGTA
50740539 AAATGATTGTTTTGCCCTCATGA-GGTA
1 AAATGATTGTTTTGCCCTCAT-ATGGTA
50740566 AAATGAT
1 AAATGAT
50740573 ATGGTAATAT
Statistics
Matches: 75, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
27 74 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTCATATGGTA
Found at i:50740940 original size:18 final size:18
Alignment explanation
Indices: 50740917--50740963 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
50740907 GACTTATATT
50740917 CTGTTACTGTACTGA-TTA
1 CTGTTACTGTACT-ATTTA
*
50740935 CTGTTACTGCACTATTTA
1 CTGTTACTGTACTATTTA
*
50740953 TTGTTACTGTA
1 CTGTTACTGTA
50740964 TTGGGCCAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (18 bp):
CTGTTACTGTACTATTTA
Found at i:50746464 original size:40 final size:40
Alignment explanation
Indices: 50746420--50746535 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
50746410 GAATACATGT
* * *
50746420 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
50746460 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
50746500 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
50746536 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:50746560 original size:40 final size:40
Alignment explanation
Indices: 50746436--50746697 Score: 225
Period size: 40 Copynumber: 6.5 Consensus size: 40
50746426 CATGATTGCT
* * * *
50746436 CTTCGGGACCTAGCCCGGATATAAC-AC-CAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTC-GCACCAATGC
** * ** * *
50746475 TCTTCGGAACTTAGTCCGGATACCTC-ACTAGCACGAATGC
1 -CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
50746515 TCTTCGGAAT-TTAGCCCGGATTTAGT-AACTCGCACCAATGC
1 -CTTCGG-GTCTTAGCCCGGATATA-TCAACTCGCACCAATGC
*
50746556 CTTCGGGTCTTAGCCCGGATATATCAACTTGCA-CAATTGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAA-TGC
* *
50746596 CTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
* *
50746636 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGC-TCAATTGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACCAA-TGC
*
50746676 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
50746698 CATTCAAATG
Statistics
Matches: 187, Mismatches: 25, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
39 7 0.04
40 161 0.86
41 19 0.10
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTCGCACCAATGC
Found at i:50746568 original size:80 final size:78
Alignment explanation
Indices: 50746446--50746697 Score: 251
Period size: 80 Copynumber: 3.2 Consensus size: 78
50746436 CTTCGGGACC
* * ** * **
50746446 TAGCCCGGATATAAC-AC-CAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCTCACTAGCAC
1 TAGCCCGGATATATCAACTC-GCACAAATGC-CTTCGGGTCTTAGCCCGGATAAATCACTAGCAC
50746509 GAA-TGCTCTTCGGAATT
64 -AATTGC-CTTCGG-ATT
* * * *
50746526 TAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC
1 TAGCCCGGATATA-TCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATC-ACTAGCAC
*
50746590 AATTGCCTTCGGGTCT
64 AATTGCCTTCGGAT-T
* *
50746606 TAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCTCA
1 TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATA-AATCACTAGCACA
*
50746671 ATTGCCTTCGGGACT
65 ATTGCCTTC-GGATT
50746686 TAGCCCGGATAT
1 TAGCCCGGATAT
50746698 CATTCAAATG
Statistics
Matches: 145, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
79 2 0.01
80 116 0.80
81 26 0.18
82 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (78 bp):
TAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCACTAGCACAA
TTGCCTTCGGATT
Found at i:50747024 original size:29 final size:28
Alignment explanation
Indices: 50746990--50747063 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 28
50746980 TAATCAACCA
*
50746990 CGCACACTTAGTGCCATGTACTTT-AAAC
1 CGCACACTTAGTGCCATGCA-TTTCAAAC
* *
50747018 TCGCACACTTAGTGTCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
50747047 CTGCACACTTAGTGCCA
1 C-GCACACTTAGTGCCA
50747064 ATCTCACAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 4 0.10
29 35 0.90
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:50747110 original size:43 final size:43
Alignment explanation
Indices: 50747049--50747233 Score: 361
Period size: 43 Copynumber: 4.3 Consensus size: 43
50747039 TTTCAAGCCT
50747049 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
50747092 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
50747135 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
*
50747178 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTC
1 GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
50747221 GCACACTTAGTGC
1 GCACACTTAGTGC
50747234 TGAAAACCAA
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 141 1.00
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCCC
Found at i:50749638 original size:27 final size:27
Alignment explanation
Indices: 50749574--50749703 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 27
50749564 CCAGATTGAT
* * *
50749574 AAATGACTATTTTGCCCTCATGAGGT-
1 AAATGTCTATTTTGCCCTTATGTGGTA
*
50749600 AAATAAT-TATTTTGCCCTTATGTGGTA
1 AAAT-GTCTATTTTGCCCTTATGTGGTA
* **
50749627 AAATGTCTATTTTGCCCTCATAAGGTA
1 AAATGTCTATTTTGCCCTTATGTGGTA
* * * *
50749654 AAATGACTGTTTTTCCCTTATATGGTA
1 AAATGTCTATTTTGCCCTTATGTGGTA
*
50749681 ATATGAT-TATTTTGCCC-TATGTG
1 AAATG-TCTATTTTGCCCTTATGTG
50749704 ATGTATATAT
Statistics
Matches: 82, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
26 27 0.33
27 55 0.67
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (27 bp):
AAATGTCTATTTTGCCCTTATGTGGTA
Found at i:50749654 original size:53 final size:54
Alignment explanation
Indices: 50749574--50749698 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 54
50749564 CCAGATTGAT
* * * *
50749574 AAATGACTATTTTGCCCTCATGAGGT-AAATAATTATTTTGCCCTTATGTGGTA
1 AAATGTCTATTTTGCCCTCATAAGGTAAAATAACTATTTTGCCCTTATATGGTA
* * *
50749627 AAATGTCTATTTTGCCCTCATAAGGTAAAATGACTGTTTTTCCCTTATATGGTA
1 AAATGTCTATTTTGCCCTCATAAGGTAAAATAACTATTTTGCCCTTATATGGTA
*
50749681 ATATGAT-TATTTTGCCCT
1 AAATG-TCTATTTTGCCCT
50749699 ATGTGATGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
53 24 0.39
54 37 0.60
55 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (54 bp):
AAATGTCTATTTTGCCCTCATAAGGTAAAATAACTATTTTGCCCTTATATGGTA
Found at i:50750047 original size:18 final size:18
Alignment explanation
Indices: 50750020--50750064 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
50750010 GACTTGTATT
*
50750020 CTGTTGCTGCACTGATTA
1 CTGTTACTGCACTGATTA
*
50750038 CTGTTACTGCACTGTTTA
1 CTGTTACTGCACTGATTA
*
50750056 TTGTTACTG
1 CTGTTACTG
50750065 TATTGGGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.44
Consensus pattern (18 bp):
CTGTTACTGCACTGATTA
Found at i:50766917 original size:47 final size:47
Alignment explanation
Indices: 50766854--50767730 Score: 1144
Period size: 47 Copynumber: 18.6 Consensus size: 47
50766844 TATTTGAATA
* * *
50766854 AATGAGAAAGTTTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50766901 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50766950 -A-GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAA-GTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-AATGTGATG
* * * *
50766995 AATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767042 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767089 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
50767138 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767185 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATTTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
50767232 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767281 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** * *
50767328 AATGTGAACTTGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
50767375 AATGTGAACA-TGTGTATGTGTGCTAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
50767422 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCAAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767469 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767516 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
** *
50767563 AATGTGAACA-TGTGCATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
50767610 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
50767657 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
50767704 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50767731 TCCCGAAGGG
Statistics
Matches: 762, Mismatches: 54, Indels: 28
0.90 0.06 0.03
Matches are distributed among these distances:
45 31 0.04
46 4 0.01
47 601 0.79
48 1 0.00
49 124 0.16
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:50767279 original size:22 final size:22
Alignment explanation
Indices: 50767251--50767373 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
50767241 GTGTATATAT
50767251 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
50767273 ATGTGATGAATG-TGAACATGTG-TA
1 ATGTGAT-AAGGCCG-A-ATG-GCCA
*
50767297 TGTGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * * *
50767320 ATGTGATGAATG-TGAACTTGCATA
1 ATGTGAT-AAGGCCGAA-TGGC-CA
*
50767344 TATGAGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
50767367 ATGTGAT
1 ATGTGAT
50767374 GAATGTGAAC
Statistics
Matches: 71, Mismatches: 18, Indels: 24
0.63 0.16 0.21
Matches are distributed among these distances:
22 24 0.34
23 15 0.21
24 15 0.21
25 17 0.24
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:50780491 original size:37 final size:37
Alignment explanation
Indices: 50780441--50780519 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50780431 TTATTACGAA
* * *
50780441 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
*
50780478 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
50780515 GTCTT
1 GTCTT
50780520 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:50780634 original size:49 final size:49
Alignment explanation
Indices: 50780560--50781143 Score: 954
Period size: 49 Copynumber: 12.1 Consensus size: 49
50780550 CCCTTCGGGA
* * * * *
50780560 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
50780607 CCTGTCACATATATATACACTTCCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780656 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780703 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50780750 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780799 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50780848 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780897 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50780944 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780993 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50781042 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50781093 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50781140 CTTA
1 CTTA
50781144 CTATCATTTC
Statistics
Matches: 507, Mismatches: 22, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 188 0.37
48 1 0.00
49 270 0.53
51 48 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50780921 original size:194 final size:194
Alignment explanation
Indices: 50780560--50781143 Score: 1005
Period size: 194 Copynumber: 3.0 Consensus size: 194
50780550 CCCTTCGGGA
* * * * * * * *
50780560 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
50780623 ACACTTCCACATTCATCACCTCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
50780686 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780750 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
50780815 ACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCAT
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
*
50780880 CACATCGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50780944 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
50781009 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTC
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTC
*
50781074 ATCACATCGGCCATTAGGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
129 ATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
50781139 C
194 C
50781140 CTTA
1 CTTA
50781144 CTATCATTTC
Statistics
Matches: 373, Mismatches: 15, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
190 10 0.03
191 1 0.00
192 82 0.22
194 190 0.51
196 90 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (194 bp):
CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50781320 original size:39 final size:40
Alignment explanation
Indices: 50781274--50781352 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 40
50781264 CACTTAAGAT
* * *
50781274 TGAGCATTAGTGGCGTTTTT-AAAAAAATGCCGCTAAAAA
1 TGAGCATTAGCGGCGTTTTTCAAAAAAACGCCGCAAAAAA
50781313 TGAGCATTAGCGGCGTTTTTCAAAAAAACGCCGCAAAAAA
1 TGAGCATTAGCGGCGTTTTTCAAAAAAACGCCGCAAAAAA
50781353 CCTTAGCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 19 0.53
40 17 0.47
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (40 bp):
TGAGCATTAGCGGCGTTTTTCAAAAAAACGCCGCAAAAAA
Found at i:50781453 original size:41 final size:40
Alignment explanation
Indices: 50781388--50781503 Score: 162
Period size: 41 Copynumber: 2.8 Consensus size: 40
50781378 AACATTTCGT
*
50781388 GGCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCT-GG
1 GGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATG-CTAGG
* *
50781429 GTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGGTAGG
1 GGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAGG
50781470 GGCTTTAGCGGCGTTTTTGATAAAGCGCCGCTAA
1 GGCTTTAGCGGCGTTTTTGA-AAAGCGCCGCTAA
50781504 AAACATTTTA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
40 3 0.04
41 65 0.96
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (40 bp):
GGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTAGG
Found at i:50781745 original size:22 final size:22
Alignment explanation
Indices: 50781720--50781794 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 22
50781710 GAGTTACTGT
50781720 TTTAAGGTTTATGGAGTATGGA
1 TTTAAGGTTTATGGAGTATGGA
* * *
50781742 TTTAAGGATTATGGATTAGGGA
1 TTTAAGGTTTATGGAGTATGGA
* *
50781764 -TTATGGTTTAAGG-GT-TGAGA
1 TTTAAGGTTTATGGAGTATG-GA
50781784 TTTAAGGTTTA
1 TTTAAGGTTTA
50781795 GGGGTTAGTG
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
19 1 0.02
20 3 0.07
21 19 0.45
22 19 0.45
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (22 bp):
TTTAAGGTTTATGGAGTATGGA
Found at i:50781766 original size:14 final size:15
Alignment explanation
Indices: 50781736--50781776 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
50781726 GTTTATGGAG
50781736 TATGGATTTAAGGAT
1 TATGGATTTAAGGAT
*
50781751 TATGGA-TTAGGGAT
1 TATGGATTTAAGGAT
50781765 TATGG-TTTAAGG
1 TATGGATTTAAGG
50781777 GTTGAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 17 0.74
15 6 0.26
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (15 bp):
TATGGATTTAAGGAT
Found at i:50781815 original size:22 final size:22
Alignment explanation
Indices: 50781789--50781851 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
50781779 TGAGATTTAA
*
50781789 GGTTTAGGGGTT-AGTGGTTAGG
1 GGTTTAGGGGTTAAG-AGTTAGG
50781811 GGTTTAGGGGTTAAGAGTTAGG
1 GGTTTAGGGGTTAAGAGTTAGG
* * *
50781833 GATTTAGGGTTTATGAGTT
1 GGTTTAGGGGTTAAGAGTT
50781852 CATGGGTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 34 0.94
23 2 0.06
ACGTcount: A:0.19, C:0.00, G:0.43, T:0.38
Consensus pattern (22 bp):
GGTTTAGGGGTTAAGAGTTAGG
Found at i:50781903 original size:12 final size:12
Alignment explanation
Indices: 50781882--50781924 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
50781872 TGGGTTTAGA
50781882 TTAA-TTATTTT
1 TTAATTTATTTT
50781893 TTAATTTATTTT
1 TTAATTTATTTT
* *
50781905 TAAATAT-TTTT
1 TTAATTTATTTT
50781916 TTAATTTAT
1 TTAATTTAT
50781925 ATATTAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTAATTTATTTT
Found at i:50781919 original size:23 final size:24
Alignment explanation
Indices: 50781881--50781934 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
50781871 TTGGGTTTAG
*
50781881 ATTAATTA-TTTTTTAATTTAT-T
1 ATTAAATATTTTTTTAATTTATAT
*
50781903 TTTAAATATTTTTTTAATTTATAT
1 ATTAAATATTTTTTTAATTTATAT
50781927 ATTAAATA
1 ATTAAATA
50781935 ATTTCATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 6 0.22
23 13 0.48
24 8 0.30
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTAAATATTTTTTTAATTTATAT
Found at i:50782156 original size:21 final size:21
Alignment explanation
Indices: 50782132--50782172 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
50782122 GATTTAAGGT
50782132 TTAGGGATTAAGAGTTAGGGG
1 TTAGGGATTAAGAGTTAGGGG
*
50782153 TTAGGGGTTAAGAGTTAGGG
1 TTAGGGATTAAGAGTTAGGG
50782173 ATTTAGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.44, T:0.29
Consensus pattern (21 bp):
TTAGGGATTAAGAGTTAGGGG
Found at i:50782181 original size:21 final size:20
Alignment explanation
Indices: 50782129--50782182 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 20
50782119 TAGGATTTAA
50782129 GGTTTAGGGATTAAGAGTTAG
1 GGTTTAGGG-TTAAGAGTTAG
*
50782150 GGGTTAGGGGTTAAGAGTTAG
1 GGTTTA-GGGTTAAGAGTTAG
50782171 GGATTTAGGGTT
1 GG-TTTAGGGTT
50782183 TCAAGGGTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 23 0.79
22 6 0.21
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (20 bp):
GGTTTAGGGTTAAGAGTTAG
Found at i:50786809 original size:43 final size:43
Alignment explanation
Indices: 50786727--50786971 Score: 287
Period size: 43 Copynumber: 5.7 Consensus size: 43
50786717 ATGGCACTTT
* * * * * *
50786727 TAGCGGCGTTTG-CGAAAAAACGTCGCTAAAAGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *** *
50786769 TAGCGGCGTTTATAAAAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* *
50786812 TAGCGGCGTTTGT-GTAAAAGTGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* * * *
50786854 TAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTTCTAATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
* ** *
50786897 TAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCCTGGCCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
50786940 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
50786972 TTAGCGACGC
Statistics
Matches: 176, Mismatches: 25, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
42 49 0.28
43 127 0.72
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGATCTA
Found at i:50786839 original size:85 final size:85
Alignment explanation
Indices: 50786727--50786971 Score: 294
Period size: 85 Copynumber: 2.9 Consensus size: 85
50786717 ATGGCACTTT
* * * * * * ***
50786727 TAGCGGCGTTTGCGAAAAAACGTCGCTAAAAGTCATGATCTATAGCGGCGTTTATAAAAAAAGCG
1 TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
*
50786792 CCGCTAAAGG-TCTTGATCTA
66 CCGCTAAAGGTTC-TAATCTA
* * *
50786812 TAGCGGCGTTTGTGTAAAAGTGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGTG
1 TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
*
50786877 TCGCTAAAGGTTCTAATCTA
66 CCGCTAAAGGTTCTAATCTA
* * ** *
50786897 TAGCGGCGTTTGTGGGAAAAGCGCCGTTAAAGGTCCTGGCCTTTAGCGGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGT-GAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGC
50786962 GCCGCTAAAG
65 GCCGCTAAAG
50786972 TTAGCGACGC
Statistics
Matches: 136, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
85 81 0.60
86 55 0.40
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (85 bp):
TAGCGGCGTTTGTGAAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAAGCG
CCGCTAAAGGTTCTAATCTA
Found at i:50787071 original size:22 final size:22
Alignment explanation
Indices: 50787043--50787085 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
50787033 CAGCGGCGCT
* *
50787043 AAAAAGCGTCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
50787065 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
50787086 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:50790776 original size:40 final size:40
Alignment explanation
Indices: 50790719--50791421 Score: 1117
Period size: 40 Copynumber: 17.6 Consensus size: 40
50790709 CCAGCATGAT
* * *
50790719 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
50790759 TGCTCTTCGGAACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50790799 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50790839 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50790879 TGCTCTTCGGGACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50790919 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50790959 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50790999 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50791039 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50791079 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50791119 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50791159 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50791199 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
50791239 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50791279 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * * *
50791319 TGGTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
* **
50791360 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAA
* *
50791400 AGC-CTTCAGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
50791422 CATCATTTGA
Statistics
Matches: 620, Mismatches: 38, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
39 3 0.00
40 597 0.96
41 20 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:50793167 original size:37 final size:37
Alignment explanation
Indices: 50793117--50793195 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50793107 TTATTACGAA
* * *
50793117 GTCTTACCCGGACATAATCTTCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
*
50793154 GTCTTACCCGGACAAAATCCTCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
50793191 GTCTT
1 GTCTT
50793196 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCATCGG
Found at i:50793310 original size:49 final size:49
Alignment explanation
Indices: 50793236--50793822 Score: 926
Period size: 49 Copynumber: 12.1 Consensus size: 49
50793226 CCCTTCGGGA
* * * * *
50793236 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
50793283 CCTGTCACATATATATACACTTCCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793332 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793379 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793475 CTTATCACACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50793528 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793577 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793624 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793673 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793722 CTTATCACATATATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793772 CCTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50793819 CTTA
1 CTTA
50793823 CTATCATTTC
Statistics
Matches: 507, Mismatches: 20, Indels: 26
0.92 0.04 0.05
Matches are distributed among these distances:
46 10 0.02
47 177 0.35
48 1 0.00
49 221 0.44
50 35 0.07
51 18 0.04
53 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50793440 original size:96 final size:97
Alignment explanation
Indices: 50793236--50793822 Score: 920
Period size: 96 Copynumber: 6.0 Consensus size: 97
50793226 CCCTTCGGGA
* * * * * * *
50793236 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
* *
50793299 ACACTTCCACATTCATCACCTCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
50793332 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
50793394 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
50793426 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC--A-AT
50793491 ATATACACTTTCACATTCATCACATCGGCCATTAGGC
61 ATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50793528 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC-ATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
50793592 CACTTTCACATTCATCACATCGGCCATTAGGC
66 CACTTTCACATTCATCACATCGGCCATTAGGC
*
50793624 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATAT
50793689 ACACTTTCACATTCATCACATCGGCCATTAGGC
65 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
50793722 CTTATCACATATATATATACAC-TTCACATTCATCACATCGGCCATTAGGCCCTATCAC-ATATA
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATA
50793785 TACACTTTCACATTCATCACATCGGCCATTAGGC
64 TACACTTTCACATTCATCACATCGGCCATTAGGC
50793819 CTTA
1 CTTA
50793823 CTATCATTTC
Statistics
Matches: 461, Mismatches: 16, Indels: 27
0.91 0.03 0.05
Matches are distributed among these distances:
94 45 0.10
95 1 0.00
96 182 0.39
97 43 0.09
98 50 0.11
99 35 0.08
100 14 0.03
102 91 0.20
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (97 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
CACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50812592 original size:30 final size:31
Alignment explanation
Indices: 50812558--50812617 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
50812548 TTTTCGAGCA
* *
50812558 TAGGGGTAAAATGGTCATTTTGCC-AAAATC
1 TAGGGGCAAAATGGTCATTTTACCGAAAATC
*
50812588 TAGGGGCAAAATGGTTATTTTACCGAAAAT
1 TAGGGGCAAAATGGTCATTTTACCGAAAAT
50812618 GTGAATTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (31 bp):
TAGGGGCAAAATGGTCATTTTACCGAAAATC
Found at i:50813089 original size:46 final size:46
Alignment explanation
Indices: 50812955--50813167 Score: 173
Period size: 46 Copynumber: 4.6 Consensus size: 46
50812945 ATTTGTGTGA
* * * * * *
50812955 GCTAGTGTAAGACATGTTTGGG-CATCCATCGGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGG
* * *
50813000 GCCAGTGTAAGAGCATGTCTGGGACATGGCATCGGCATTGAGACGAGG
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGG
* * *
50813048 GCTAGTGTAAGACATGTCTGGGTCATTCATCGGCCTCGAGACGTAAG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AGG
* * * **
50813095 TC-AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGGGATGATA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGG
* *
50813140 GTTAGTGTAAGACCATGTCTAGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
50813168 GAATCGACAC
Statistics
Matches: 135, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
45 14 0.10
46 65 0.48
47 33 0.24
48 22 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGG
Found at i:50813114 original size:93 final size:92
Alignment explanation
Indices: 50812955--50813127 Score: 235
Period size: 93 Copynumber: 1.9 Consensus size: 92
50812945 ATTTGTGTGA
* * *
50812955 GCTAGTGTAAGACATGTTTGGGCATCCATCGGCCACATTATGAGAGCCAGTGTAAGAGCATGTCT
1 GCTAGTGTAAGACATGTCTGGGCATCCATCGGCCACATGACGAGAGCCAGTGTAAGAGCATGTCT
50813020 GGGACATGGCATCGGCATTGAGACGAGG
66 GGGACAT-GCATCGGCATTGAGACGAGG
* * *
50813048 GCTAGTGTAAGACATGTCTGGGTCATTCATCGGCCTCGA-GACGTA-AGTCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGG-CATCCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGAGCATG
50813110 TCTGGGACATGCATCGGC
63 TCTGGGACATGCATCGGC
50813128 TACGGGATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
92 8 0.11
93 35 0.49
94 26 0.37
95 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGCATCCATCGGCCACATGACGAGAGCCAGTGTAAGAGCATGTCT
GGGACATGCATCGGCATTGAGACGAGG
Found at i:50817588 original size:23 final size:23
Alignment explanation
Indices: 50817546--50817669 Score: 103
Period size: 23 Copynumber: 5.3 Consensus size: 23
50817536 AGCTCCTCCA
*
50817546 GAGCTGATGAACAGTAAGCTCTATT
1 GAGCTGA--AACAGTAAGCTCTATC
* *
50817571 GAGCTGAAACGGTAAGCTTTATC
1 GAGCTGAAACAGTAAGCTCTATC
*
50817594 AAGCT-AAACAGTAAGCT-TATAC
1 GAGCTGAAACAGTAAGCTCTAT-C
*
50817616 GAGCTGAAACAGTAAGCTCCAAT-
1 GAGCTGAAACAGTAAGCT-CTATC
* *
50817639 GAGCTAAAAATAGTAAGCTCCTA-C
1 GAGCT-GAAACAGTAAGCT-CTATC
50817663 GAGCTGA
1 GAGCTGA
50817670 TATCTCGGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
21 3 0.04
22 16 0.20
23 35 0.43
24 19 0.23
25 9 0.11
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.23
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTATC
Found at i:50817644 original size:45 final size:46
Alignment explanation
Indices: 50817555--50817669 Score: 110
Period size: 45 Copynumber: 2.5 Consensus size: 46
50817545 AGAGCTGATG
* * **
50817555 AACAGTAAGCTCTAT-TGAGCTGAAACGGTAAGCTTTATCAAGCT-A
1 AACAGTAAGCT-TATACGAGCTGAAACAGTAAGCTCAATCAAGCTAA
*
50817600 AACAGTAAGCTTATACGAGCTGAAACAGTAAGCTCCAAT-GAGCTAAA
1 AACAGTAAGCTTATACGAGCTGAAACAGTAAGCT-CAATCAAGCT-AA
* **
50817647 AATAGTAAGCTCCTACGAGCTGA
1 AACAGTAAGCTTATACGAGCTGA
50817670 TATCTCGGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 3 0.05
45 32 0.55
46 2 0.03
47 21 0.36
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (46 bp):
AACAGTAAGCTTATACGAGCTGAAACAGTAAGCTCAATCAAGCTAA
Found at i:50825787 original size:40 final size:40
Alignment explanation
Indices: 50825732--50825933 Score: 173
Period size: 40 Copynumber: 5.1 Consensus size: 40
50825722 CGAAATTTAA
* * ** *
50825732 CCGGATATAGCAACTCATTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* *
50825772 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* *
50825812 CCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTAACTCACACAAATGCCTTCGGGACTTAGC
* * *
50825851 CCGG-AATTAGTAACTC-GACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGC
* ** * *
50825890 TCGAATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGTTATAGTAACTCA-CACAAATGCCTTCGGGACTTAGC
50825930 CCGG
1 CCGG
50825934 ACATCATTCG
Statistics
Matches: 131, Mismatches: 22, Indels: 18
0.77 0.13 0.11
Matches are distributed among these distances:
37 2 0.02
38 11 0.08
39 32 0.24
40 76 0.58
41 10 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGC
Found at i:50825918 original size:78 final size:81
Alignment explanation
Indices: 50825751--50825934 Score: 209
Period size: 78 Copynumber: 2.3 Consensus size: 81
50825741 GCAACTCATT
* *
50825751 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
50825815 GATTTAGTAACTCGCAC
65 AATATAGTAACTAGCAC
* ***
50825832 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCG-ACAAATGCCTTC-GGATCTTAGTTCG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
*
50825893 AATATAGTCACTTAGCA-
65 AATATAGTAAC-TAGCAC
50825910 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
50825935 CATCATTCGA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 3 0.03
78 38 0.43
79 34 0.39
80 10 0.11
81 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATATAGTAACTAGCAC
Found at i:50827867 original size:12 final size:13
Alignment explanation
Indices: 50827839--50827871 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50827829 TTATTTCTTT
50827839 TTCTCCATCTACC
1 TTCTCCATCTACC
*
50827852 TTCTCC-TCTTCC
1 TTCTCCATCTACC
50827864 TTCTCCAT
1 TTCTCCAT
50827872 AGCTGAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:50828966 original size:28 final size:28
Alignment explanation
Indices: 50828926--50828993 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
50828916 TAGATGTACT
*
50828926 ATTATACCCCTATGTATGAAAAATTACC
1 ATTATACCCCTATGTATGAAAAATGACC
*
50828954 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGAAAAATGACC
*
50828982 TTTATACCCCTA
1 ATTATACCCCTA
50828994 GGGTTAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGAAAAATGACC
Found at i:50829199 original size:29 final size:27
Alignment explanation
Indices: 50829099--50829188 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50829089 AGGAAGCGTC
50829099 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
50829127 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
50829154 CTGGTGGCACTGCCACAGAATATCTGTAT
1 CTGGTGGCACTGCCACA-AATATCTGT-T
50829183 CTGGTG
1 CTGGTG
50829189 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:50829207 original size:55 final size:56
Alignment explanation
Indices: 50829099--50829213 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
50829089 AGGAAGCGTC
*
50829099 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
50829154 CTGGTGGC-ACTGCCACAGAA-TATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACA-AATTATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
50829210 CTGG
1 CTGG
50829214 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.54
56 23 0.44
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:50833500 original size:39 final size:40
Alignment explanation
Indices: 50833405--50833627 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
50833395 TTGAATGATG
*
50833405 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
50833443 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
50833484 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
50833523 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
50833562 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
50833601 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50833628 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:50833591 original size:79 final size:81
Alignment explanation
Indices: 50833405--50833627 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
50833395 TTGAATGATG
* * *
50833405 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
50833467 TTGTGCGAGATACTAAT
65 TTGTGCAAGATACTAAA
50833484 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
50833545 TTGTGCAAGTTACTAAA
65 TTGTGCAAGATACTAAA
* * * * *
50833562 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
50833626 TG
66 TG
50833628 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 45 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGATACTAAA
Found at i:50833649 original size:79 final size:79
Alignment explanation
Indices: 50833405--50833660 Score: 199
Period size: 79 Copynumber: 3.3 Consensus size: 79
50833395 TTGAATGATG
* * * *
50833405 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** * *
50833466 TTTGTGCGAGAT-ACTAAT
62 TTTGAACAAG-TGACTAAA
* *
50833484 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
50833548 TGCAAGTTACTAAA
66 AACAAGTGACTAAA
*
50833562 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
50833625 TTGAACGAG-GAGCTATA
63 TTGAACAAGTGA-CTAAA
* *
50833642 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50833661 TACGTGATTT
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 45 0.30
79 69 0.46
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACAAGTGACTAAA
Found at i:50838889 original size:12 final size:13
Alignment explanation
Indices: 50838861--50838893 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50838851 TTATTTCTTT
50838861 TTCTCCATCTACC
1 TTCTCCATCTACC
*
50838874 TTCTCC-TCTTCC
1 TTCTCCATCTACC
50838886 TTCTCCAT
1 TTCTCCAT
50838894 AGCTGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:50839987 original size:28 final size:28
Alignment explanation
Indices: 50839947--50840014 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
50839937 TAGATGTACT
*
50839947 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
50839975 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
50840003 TTTATACCCCTA
1 ATTATACCCCTA
50840015 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:50840220 original size:29 final size:27
Alignment explanation
Indices: 50840120--50840209 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50840110 AGGAAGCGTC
50840120 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
50840148 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
50840175 CTGGTGGCACTGCCACAGAATATCTGTAT
1 CTGGTGGCACTGCCACA-AATATCTGT-T
50840204 CTGGTG
1 CTGGTG
50840210 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:50840228 original size:55 final size:56
Alignment explanation
Indices: 50840120--50840234 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 56
50840110 AGGAAGCGTC
*
50840120 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
50840175 CTGGTGGC-ACTGCCACAGAA-TATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACA-AATTATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
50840231 CTGG
1 CTGG
50840235 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.54
56 23 0.44
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:50845943 original size:40 final size:40
Alignment explanation
Indices: 50845874--50846159 Score: 430
Period size: 40 Copynumber: 7.2 Consensus size: 40
50845864 AACCCAAGTA
* **
50845874 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50845913 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50845953 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
50845993 CCTTTGGGACTTAGCCCGGAAATAGTAAATCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** *
50846033 CCTTTAGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
50846073 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
50846113 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
50846153 CCTTCGG
1 CCTTCGG
50846160 ATCTTAGTCC
Statistics
Matches: 228, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
39 13 0.06
40 215 0.94
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:50855056 original size:40 final size:40
Alignment explanation
Indices: 50854987--50855232 Score: 377
Period size: 40 Copynumber: 6.2 Consensus size: 40
50854977 AACCCAAGTA
* * **
50854987 CCTTCGGGA-TTTAGCCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
*
50855026 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* * * *
50855066 CCTTTGGGACTTAGCCCGGATATAGTAAATCGTACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
*
50855106 CCTTCAGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
50855146 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
* *
50855186 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
50855226 CCTTCGG
1 CCTTCGG
50855233 ATCTTAGTCC
Statistics
Matches: 190, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
39 9 0.05
40 181 0.95
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
Found at i:50860734 original size:67 final size:64
Alignment explanation
Indices: 50860626--50860779 Score: 193
Period size: 64 Copynumber: 2.4 Consensus size: 64
50860616 AACACTCAAT
* * * * * *
50860626 ACCACCCATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTA
1 ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGT-T--TACACATA
50860690 GA
63 GA
* *
50860692 ACCACGCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGT
1 ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGA
*
50860756 ATCACCCATGCGACCTAGCTACAT
1 ACCACCCATGCGACCTAGCTACAT
50860780 CATAATGTCT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
64 29 0.38
66 19 0.25
67 29 0.38
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (64 bp):
ACCACCCATGCGACCTAGCTACATATATCACGTAGCTCTCTTGTCTACATGGTTTACACATAGA
Found at i:50865067 original size:38 final size:38
Alignment explanation
Indices: 50865016--50865217 Score: 278
Period size: 38 Copynumber: 5.3 Consensus size: 38
50865006 ATATTCGATG
*
50865016 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
50865054 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
50865092 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTAGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
50865132 AATATCCGGGTTAAATCCCGCAAGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
50865170 TATAACCGGGATAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
50865208 TATATTCGGG
1 TATATCCGGG
50865218 CCTTCGTGCT
Statistics
Matches: 143, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
38 105 0.73
39 10 0.07
40 28 0.20
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:50865119 original size:78 final size:76
Alignment explanation
Indices: 50865016--50865217 Score: 271
Period size: 78 Copynumber: 2.6 Consensus size: 76
50865006 ATATTCGATG
*
50865016 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAAGCTT
50865081 CGTGCTGGTAT
66 CGTGCTGGTAT
* * * ** *
50865092 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTAGTAAAATATCCGGGTTAAATCCCGCAAGC
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAAGC
50865157 TTCGTGCTGGTAT
64 TTCGTGCTGGTAT
* * * *
50865170 TATAACCGGGATAAATCCCGCAGGCCT-AGTGCTGGTATTATATTCGGG
1 TATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTATTATATCCGGG
50865218 CCTTCGTGCT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
76 35 0.33
77 9 0.08
78 63 0.59
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (76 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCACAAGCTT
CGTGCTGGTAT
Found at i:50865334 original size:43 final size:43
Alignment explanation
Indices: 50865210--50865321 Score: 197
Period size: 43 Copynumber: 2.6 Consensus size: 43
50865200 GCTGGTATTA
* *
50865210 TATTCGGGCCTTCGTGCTTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
50865253 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
*
50865296 TATTCGGGCCTTCGTGCCTAACAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
50865322 GTAATACCGG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.12, C:0.26, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
Found at i:50865718 original size:45 final size:44
Alignment explanation
Indices: 50865651--50865777 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 44
50865641 TTGACTTGAT
* * *
50865651 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGA-AC
* *
50865696 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGT--GAAC
1 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
* *
50865738 TGATATCGGGCC-TCGAGCCTAACAAGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGA
50865778 TTTGAGAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
42 11 0.16
43 18 0.26
44 7 0.10
45 33 0.48
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (44 bp):
TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAGAAC
Found at i:50874068 original size:41 final size:41
Alignment explanation
Indices: 50874011--50874089 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
50874001 GTTAGAATTA
*
50874011 GTGTACCGGTGAATATAAATGGTTTTGTTTTAAAACTATTT
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTATTT
50874052 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
1 GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTA
50874090 GTACTAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (41 bp):
GTGTACCAGTGAATATAAATGGTTTTGTTTTAAAACTATTT
Found at i:50874453 original size:9 final size:9
Alignment explanation
Indices: 50874432--50874465 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
50874422 ATTTATTTTT
50874432 AAAAATTT-
1 AAAAATTTA
*
50874440 CAAAATTTA
1 AAAAATTTA
50874449 AAAAATTTA
1 AAAAATTTA
50874458 AAAAATTT
1 AAAAATTT
50874466 CATAAAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
AAAAATTTA
Found at i:50874524 original size:28 final size:28
Alignment explanation
Indices: 50874490--50874543 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
50874480 AATATATTTT
* *
50874490 TTTAAAAATTAAAAAAATATTAAAATTA
1 TTTAAAAAGTAAAAAAATATAAAAATTA
*
50874518 TTTAAAAAGTAAAAAATTATAAAAAT
1 TTTAAAAAGTAAAAAAATATAAAAAT
50874544 ATATATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
TTTAAAAAGTAAAAAAATATAAAAATTA
Found at i:50874540 original size:17 final size:18
Alignment explanation
Indices: 50874492--50874548 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 18
50874482 TATATTTTTT
50874492 TAAAAATTA-AAAAAATA
1 TAAAAATTATAAAAAATA
* *
50874509 TTAAAATTATTTAAAAAGTA
1 TAAAAATTA--TAAAAAATA
50874529 -AAAAATTATAAAAATATA
1 TAAAAATTATAAAAA-ATA
50874547 TA
1 TA
50874549 TATTTTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
17 14 0.45
18 2 0.06
19 8 0.26
20 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (18 bp):
TAAAAATTATAAAAAATA
Found at i:50877399 original size:3 final size:3
Alignment explanation
Indices: 50877386--50877430 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
50877376 GCCGCTTACA
50877386 AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
50877431 GTTTAATCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50880546 original size:46 final size:46
Alignment explanation
Indices: 50880458--50880583 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 46
50880448 GGTAAGGTGC
* * *
50880458 CGATGCCATGTCCCAGA-ATGGTCTTACACT-GATAATCATCTCGTAGCT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCG-AGCT
* * *
50880506 -GATGCCTGTCCCAGACATGTCTTACATTGGCTTACGTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCT
50880551 CGATGCATGTCCCAGACATGTCTTACACTGGCT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCT
50880584 CACACACGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
45 3 0.04
46 55 0.82
47 9 0.13
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCT
Found at i:50884908 original size:46 final size:46
Alignment explanation
Indices: 50884841--50885009 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
50884831 AACCCGCCCC
* *
50884841 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
50884887 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
50884935 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
50884980 TAGGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCGGACTCAACTCAACGAGTT
50885010 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 56 0.54
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:50884954 original size:93 final size:93
Alignment explanation
Indices: 50884846--50885016 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50884836 GCCCCTAAGT
* *
50884846 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50884911 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
50884939 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
50885004 CGAGTTTGGATGC
66 CGAGTTCGGATGC
50885017 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50892446 original size:93 final size:93
Alignment explanation
Indices: 50892337--50892507 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
50892327 TCCCCTAAGT
**** * *
50892337 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCTTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
50892402 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
50892430 GAACTCGGACTCAACTCAACGAGTTAAAATATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
50892495 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50892508 TCAACCATCC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTAAAACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50893959 original size:36 final size:36
Alignment explanation
Indices: 50893912--50893985 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
50893902 TTGCATAAGA
50893912 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
1 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
50893948 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
1 ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
50893984 AC
1 AC
50893986 AAACTCCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (36 bp):
ACGCACCCCAAAATCAAGGTGGCGTCGCTATATATC
Found at i:50897515 original size:22 final size:21
Alignment explanation
Indices: 50897475--50897515 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
50897465 CACTTGACAC
*
50897475 AGGGGCACACGCTCATGTGGG
1 AGGGGCACACGCCCATGTGGG
*
50897496 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCATGTG
50897516 AGCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:50902705 original size:24 final size:23
Alignment explanation
Indices: 50902672--50902724 Score: 79
Period size: 24 Copynumber: 2.3 Consensus size: 23
50902662 ATGTATTGGC
* *
50902672 AAAAGCCGAAATGCCGAAAAGCT
1 AAAAGTCGAAATGCCAAAAAGCT
50902695 GAAAAGTCGAAATGCCAAAAAGCT
1 -AAAAGTCGAAATGCCAAAAAGCT
50902719 AAAAGT
1 AAAAGT
50902725 TTGGCTACAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (23 bp):
AAAAGTCGAAATGCCAAAAAGCT
Found at i:50902927 original size:29 final size:29
Alignment explanation
Indices: 50902890--50903017 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
50902880 ATGAACGTGA
*
50902890 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
50902919 TGGGCCTAATGGACCATATACA-G-G-TT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
50902945 TGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
50902974 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
50903002 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
50903018 GATACAGGAA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.26
27 2 0.02
28 18 0.21
29 44 0.51
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:50904973 original size:3 final size:3
Alignment explanation
Indices: 50904959--50905018 Score: 99
Period size: 3 Copynumber: 21.0 Consensus size: 3
50904949 ACCAAAAAAC
50904959 AAG AAG AA- AAG AAG AAG AAG AAG AAG AAG AAG AA- AAG AA- AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
50905004 AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG
50905019 CCGTGTTTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 6 0.11
3 48 0.89
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50922721 original size:46 final size:46
Alignment explanation
Indices: 50922668--50922788 Score: 188
Period size: 46 Copynumber: 2.6 Consensus size: 46
50922658 GTATGTGAGA
* *
50922668 CAGTGTAAGACATGTTTGAGACATGCATCGACCACAACATAAGTGC
1 CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
* * *
50922714 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACAACATGAGTCC
1 CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
*
50922760 CAGTGTAAGACATGTTTGGGACATTCATC
1 CAGTGTAAGACATGTTTGGGACATGCATC
50922789 AGCCTTGGGA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACATGTTTGGGACATGCATCGACCACAACATAAGTCC
Found at i:50922954 original size:49 final size:50
Alignment explanation
Indices: 50922850--50922982 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 50
50922840 CTAGTTGGGT
* * *
50922850 GTCAGTGTAAGACCTGTATGGGATATGACATCGA-CACCGATAAATGAGA
1 GTCAGTGTAAGACATGTATGGGACATGACATCGACCACCGATAAATGAAA
* * * * **
50922899 GCCAGTGTAAGACATGTCTGGGACATGGCATCGACCA-TGATATGTGAAA
1 GTCAGTGTAAGACATGTATGGGACATGACATCGACCACCGATAAATGAAA
* * * *
50922948 GTCAGTGTAAGGCTTGTTTGGGACACGACATCGAC
1 GTCAGTGTAAGACATGTATGGGACATGACATCGAC
50922983 TTTAATGTGC
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
49 66 0.97
50 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (50 bp):
GTCAGTGTAAGACATGTATGGGACATGACATCGACCACCGATAAATGAAA
Found at i:50927305 original size:49 final size:50
Alignment explanation
Indices: 50927249--50927486 Score: 239
Period size: 49 Copynumber: 4.8 Consensus size: 50
50927239 TAGGCAAAGC
* * *
50927249 TATCTGGTACGCATAGGAGCCTGCACTTAGTACTACTCATGCGA-CGAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAAT
* * * * *
50927298 TATCTGGTACATATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAAT
* * * * * * *
50927348 CATCTGATACACGTAGTAGCTTGCACCTAGTACTACACACT-TGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA-TGCGACCGAA-T
* **
50927399 TATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAAT
* * * *
50927448 AATCCGGTACACGTAGTAGCCTGCTCTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
50927487 CGTGACCTCA
Statistics
Matches: 151, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
49 72 0.48
50 45 0.30
51 34 0.23
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCGAAT
Found at i:50930037 original size:28 final size:28
Alignment explanation
Indices: 50930006--50930122 Score: 132
Period size: 28 Copynumber: 4.1 Consensus size: 28
50929996 GTGAGCATGA
*
50930006 ATAT-AATGTGATTTGGGTCGGATGGGCC
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* *
50930034 ATATAAATGAGATTGGGCCTGATGGGCC
1 ATATAAATGTGATTGGGCCGGATGGGCC
50930062 ATATGAAA-GTGAATTGGGCCGGATGGGCC
1 ATAT-AAATGTG-ATTGGGCCGGATGGGCC
* *
50930091 ATATAAATGAGATTGGGCC-TAGTGGGCC
1 ATATAAATGTGATTGGGCCGGA-TGGGCC
50930119 ATAT
1 ATAT
50930123 GCATGTATGT
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.01
28 45 0.58
29 31 0.40
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:50930086 original size:29 final size:28
Alignment explanation
Indices: 50930018--50930122 Score: 142
Period size: 28 Copynumber: 3.7 Consensus size: 28
50930008 ATAATGTGAT
*
50930018 TTGGGTCGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGAGA
*
50930046 TTGGGCCTGATGGGCCATATGAAAGTGA-A
1 TTGGGCCGGATGGGCCATAT-AAA-TGAGA
50930075 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCGGATGGGCCATATAAATGAGA
*
50930103 TTGGGCC-TAGTGGGCCATAT
1 TTGGGCCGGA-TGGGCCATAT
50930123 GCATGTATGT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.06
28 39 0.57
29 23 0.33
30 3 0.04
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (28 bp):
TTGGGCCGGATGGGCCATATAAATGAGA
Found at i:50930106 original size:57 final size:57
Alignment explanation
Indices: 50930013--50930123 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 57
50930003 TGAATATAAT
* *
50930013 GTGATTTGGGTCGGATGGGCCATATAAATGAGATTGGGCCT-GATGGGCCATATGAAA
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAG-TGGGCCATATGAAA
50930070 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATG
50930124 CATGTATGTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 50 0.98
58 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.36, T:0.25
Consensus pattern (57 bp):
GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGGCCATATGAAA
Found at i:50930778 original size:17 final size:17
Alignment explanation
Indices: 50930752--50930785 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50930742 TATATATTTG
*
50930752 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
50930769 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
50930786 TTAAGTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:50932135 original size:24 final size:24
Alignment explanation
Indices: 50932103--50932219 Score: 137
Period size: 24 Copynumber: 4.9 Consensus size: 24
50932093 GAAATGACAT
50932103 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
50932127 TGGCACTATGTGTGTGTATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* * *
50932151 TGGCACTACGTGTGTGGATTAGCAA
1 TGGCACTATGTGTGCGGATTTG-AA
* * *
50932176 -GGCACTATGTGTGCGGGTTAGCA
1 TGGCACTATGTGTGCGGATTTGAA
*
50932199 TGGCACTATGTGTGCGAATTT
1 TGGCACTATGTGTGCGGATTT
50932220 CCTTGACCGA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
23 1 0.01
24 76 0.96
25 2 0.03
ACGTcount: A:0.21, C:0.14, G:0.32, T:0.33
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:50933402 original size:30 final size:30
Alignment explanation
Indices: 50933368--50933428 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
50933358 TTCCCGAGCC
50933368 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
50933398 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
50933428 T
1 T
50933429 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:50934209 original size:68 final size:66
Alignment explanation
Indices: 50934137--50934286 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
50934127 CATCATGTGT
* * * *
50934137 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGAACACCA
50934200 TGTAG
62 TGTAG
* * * *
50934205 ACAAGAGAGGTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGAACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGAACACCATGT
50934270 AG
65 AG
50934272 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
50934287 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 5 0.07
67 26 0.37
68 12 0.17
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGAACACCATGTA
G
Found at i:50948162 original size:27 final size:26
Alignment explanation
Indices: 50948113--50948199 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 26
50948103 AATATTGGCA
* * ** *
50948113 AAATTACCAAAATACCCTTGTAGTGT
1 AAATGACCATAATACCCCAGTAGGGT
* *
50948139 AAAATGACCGTAATGCCCCAGTAGGGT
1 -AAATGACCATAATACCCCAGTAGGGT
* *
50948166 AAATGACCATAATACCCCTGTATGGT
1 AAATGACCATAATACCCCAGTAGGGT
50948192 AGAATGAC
1 A-AATGAC
50948200 GATTATGCCC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 23 0.48
27 25 0.52
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (26 bp):
AAATGACCATAATACCCCAGTAGGGT
Found at i:50948178 original size:26 final size:26
Alignment explanation
Indices: 50948140--50948209 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
50948130 TTGTAGTGTA
*
50948140 AAATGACCGTAATGCCCCAGTAGGGT
1 AAATGACCATAATGCCCCAGTAGGGT
* * *
50948166 AAATGACCATAATACCCCTGTATGGT
1 AAATGACCATAATGCCCCAGTAGGGT
* *
50948192 AGAATGACGATTATGCCC
1 A-AATGACCATAATGCCC
50948210 TTATGCTCCG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 23 0.64
27 13 0.36
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (26 bp):
AAATGACCATAATGCCCCAGTAGGGT
Found at i:50948680 original size:28 final size:28
Alignment explanation
Indices: 50948628--50948681 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 28
50948618 CAACTATTAC
*
50948628 TGATTTTGAGAATGGGCTAGGCCCAAAT
1 TGATTTTGAGAATGGGCTAGACCCAAAT
50948656 TGATTTTGATG-A-GGGCTGAGACCCAA
1 TGATTTTGA-GAATGGGCT-AGACCCAA
50948682 GTGAAATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 5 0.22
28 17 0.74
29 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
TGATTTTGAGAATGGGCTAGACCCAAAT
Found at i:50949705 original size:30 final size:30
Alignment explanation
Indices: 50949647--50949705 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
50949637 ATTTTGTGGC
* **
50949647 CTAGGGGCAAAATGGTCATTTTGTCAAAGT
1 CTAGGAGCAAAATGGTCATTTTACCAAAGT
50949677 CTAGGAGCAAAATGGTCATTTTACCAAAG
1 CTAGGAGCAAAATGGTCATTTTACCAAAG
50949706 ATATGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (30 bp):
CTAGGAGCAAAATGGTCATTTTACCAAAGT
Found at i:50950163 original size:47 final size:45
Alignment explanation
Indices: 50950043--50950165 Score: 115
Period size: 47 Copynumber: 2.6 Consensus size: 45
50950033 TCACTTATAT
50950043 GAGCTAGTGTAAGACATATCTGGGACAT-GCATCGGCCACATTAGGA
1 GAGCTAGTGTAAGACATATCTGGGACATGGCATCGG-C-CATTAGGA
* ** * * *
50950089 GAGCCAGAATAAGACCATGTCTAGGACATGGCATTGG-CATTAAGATGA
1 GAGCTAGTGTAAGA-CATATCTGGGACATGGCATCGGCCATT-AG--GA
*
50950137 GTGCTAGTGTAAGACATATCTGGGACATG
1 GAGCTAGTGTAAGACATATCTGGGACATG
50950166 TTTCGGCCTC
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
45 4 0.07
46 13 0.22
47 25 0.42
48 18 0.30
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATATCTGGGACATGGCATCGGCCATTAGGA
Found at i:50950218 original size:46 final size:45
Alignment explanation
Indices: 50950133--50950264 Score: 142
Period size: 46 Copynumber: 2.8 Consensus size: 45
50950123 TGGCATTAAG
* ** *
50950133 ATGAGTGCTAGTGTAAGACATATCTGGGACATGTTTCGGCCT-CGAG
1 ATGAGT-C-AGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAC
50950179 ATGCCAGTCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAC
1 ATG--AGTCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAC
* *
50950225 ATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 ATGAGTCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50950265 ACCTGCATCC
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
44 12 0.16
45 15 0.20
46 43 0.58
47 1 0.01
48 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (45 bp):
ATGAGTCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGAC
Found at i:50952488 original size:34 final size:34
Alignment explanation
Indices: 50952450--50952514 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
50952440 TTTCAGTTAG
*
50952450 GGCCTCAGCCCAATACAGTAATAGTATCAATGTA
1 GGCCTCAGCCCAATACAGTAATAGTAACAATGTA
* * *
50952484 GGCCTTAGCCCATTTCAGTAATAGTAACAAT
1 GGCCTCAGCCCAATACAGTAATAGTAACAAT
50952515 ACAGATATGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (34 bp):
GGCCTCAGCCCAATACAGTAATAGTAACAATGTA
Found at i:50953418 original size:31 final size:31
Alignment explanation
Indices: 50953383--50953443 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
50953373 TATTCATGAG
* *
50953383 ATTACCTATCACTTGCTTAGATCAATCACGC
1 ATTACCTATAACTTGCTCAGATCAATCACGC
50953414 ATTACCTATAACTTGCTCAGATCAATCACG
1 ATTACCTATAACTTGCTCAGATCAATCACG
50953444 TACTAAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (31 bp):
ATTACCTATAACTTGCTCAGATCAATCACGC
Found at i:50961420 original size:13 final size:13
Alignment explanation
Indices: 50961402--50961437 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
50961392 GGCAGAGACG
50961402 TAGCCGTGTGTCT
1 TAGCCGTGTGTCT
50961415 TAGCCGTGTGTCT
1 TAGCCGTGTGTCT
*
50961428 TAGCCATGTG
1 TAGCCGTGTG
50961438 AAGGACACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.22, G:0.31, T:0.36
Consensus pattern (13 bp):
TAGCCGTGTGTCT
Found at i:50977187 original size:40 final size:40
Alignment explanation
Indices: 50977143--50977236 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
50977133 AAGTGAATAT
* * *
50977143 ATCCGGATTATGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGATTAAG-TCCCGAAGGCATTCGTGCGAGATACTAA
* * *
50977183 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGATTAAGTCCCGAAGGCATTCGTGCGAGATACTAA
*
50977223 ATCCGGGTTAAGTC
1 ATCCGGATTAAGTC
50977237 GAGTTATTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.02
40 46 0.98
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATCCGGATTAAGTCCCGAAGGCATTCGTGCGAGATACTAA
Found at i:50977239 original size:24 final size:24
Alignment explanation
Indices: 50977212--50977260 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
50977202 GGCATTCGTG
50977212 CGAGTTATTAAATCCGGGTTAAGT
1 CGAGTTATTAAATCCGGGTTAAGT
50977236 CGAGTTATTAAATCCGGGTTAAGT
1 CGAGTTATTAAATCCGGGTTAAGT
50977260 C
1 C
50977261 CCGAAGGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (24 bp):
CGAGTTATTAAATCCGGGTTAAGT
Found at i:50977260 original size:64 final size:64
Alignment explanation
Indices: 50977180--50977300 Score: 242
Period size: 64 Copynumber: 1.9 Consensus size: 64
50977170 TGCGAGATAC
50977180 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCGAGTTAT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCGAGTTAT
50977244 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
50977301 CCGAAGGCAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (64 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCGAGTTAT
Found at i:50977291 original size:40 final size:40
Alignment explanation
Indices: 50977236--50977470 Score: 391
Period size: 40 Copynumber: 5.9 Consensus size: 40
50977226 CGGGTTAAGT
50977236 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
50977276 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
*
50977316 CGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
50977356 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
* *
50977396 CGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATT-GTG
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
* * * * *
50977435 TGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
50977471 TGAACGAGGA
Statistics
Matches: 186, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 34 0.18
40 152 0.82
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
Found at i:50977364 original size:144 final size:144
Alignment explanation
Indices: 50977104--50977380 Score: 405
Period size: 144 Copynumber: 1.9 Consensus size: 144
50977094 TTGAATGCTG
* * * * *
50977104 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTATGATCCGAAGGCCTTT
1 TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
50977169 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAA
66 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAA
50977234 GTCGAGTTATTAAA
131 GTCGAGTTATTAAA
* * * * *
50977248 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAT
* **
50977311 TCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTT
64 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTT
50977376 AAGTC
129 AAGTC
50977381 CCGAAGGCAT
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
143 1 0.01
144 111 0.94
145 6 0.05
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (144 bp):
TCCGGGCTAAGTCCCGAAGGCTTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATTC
GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAA
GTCGAGTTATTAAA
Found at i:50985202 original size:71 final size:71
Alignment explanation
Indices: 50985097--50985242 Score: 197
Period size: 71 Copynumber: 2.1 Consensus size: 71
50985087 TTTTGCGAGA
* *
50985097 TAAATCCGGGTTAAGTCGAAGATCGTGCGAGTGTTAAATCGGGTTAAGTCCCGAAGGCATTCGTG
1 TAAATCCGGGTTAAGTCCAAGATCGTGCGAGTGTTAAATCCGGTTAAGT-CCGAAGGCATT-GTG
*
50985162 CGAGTTAT
64 CGAGTTAC
** * *
50985170 TAAATCCGGG-TAAGTCCCGGAT-GTGCGAGTGTTAAATCCGGTTATGTCCGAAGGCATTGTGTG
1 TAAATCCGGGTTAAGTCCAAGATCGTGCGAGTGTTAAATCCGGTTAAGTCCGAAGGCATTGTGCG
50985233 AGTTAC
66 AGTTAC
50985239 TAAA
1 TAAA
50985243 ACGGGCTATG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
69 13 0.20
70 11 0.17
71 23 0.35
72 9 0.14
73 10 0.15
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.28
Consensus pattern (71 bp):
TAAATCCGGGTTAAGTCCAAGATCGTGCGAGTGTTAAATCCGGTTAAGTCCGAAGGCATTGTGCG
AGTTAC
Found at i:50988073 original size:33 final size:33
Alignment explanation
Indices: 50988036--50988103 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
50988026 TGGAAGTTAC
* *
50988036 ATAATGCATGTCA-TAGTTAAGAGATGTAGATTA
1 ATAATGCATGACATTAATTAA-AGATGTAGATTA
*
50988069 ATAATGCATGACATTAATTAAAGATGTATATTA
1 ATAATGCATGACATTAATTAAAGATGTAGATTA
50988102 AT
1 AT
50988104 GATGTTAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 25 0.81
34 6 0.19
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (33 bp):
ATAATGCATGACATTAATTAAAGATGTAGATTA
Found at i:51004473 original size:16 final size:16
Alignment explanation
Indices: 51004452--51004485 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
51004442 TTATTCTAGG
51004452 CTGTTCGATAGGTACA
1 CTGTTCGATAGGTACA
51004468 CTGTTCGATAGGTACA
1 CTGTTCGATAGGTACA
51004484 CT
1 CT
51004486 TGCCGACATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (16 bp):
CTGTTCGATAGGTACA
Found at i:51007933 original size:43 final size:44
Alignment explanation
Indices: 51007781--51007943 Score: 174
Period size: 43 Copynumber: 3.8 Consensus size: 44
51007771 CATAGGATTC
* *
51007781 CGATATGTGA-TTTCGTGTAAGACCAAGTCTGGGACGTTCACAT
1 CGATATGTGAGTTACGTGTAAGACCAAGTCTGGGACGTTCGCAT
* * * * * * *
51007824 CGATTTGTGATTTACGTGTAGGACCATGTTTAGGACATT-GACAT
1 CGATATGTGAGTTACGTGTAAGACCAAGTCTGGGACGTTCG-CAT
*
51007868 CG-TATATGAGTT-CGTGTAAGACCAAGTCTGGGACGTTCGCAT
1 CGATATGTGAGTTACGTGTAAGACCAAGTCTGGGACGTTCGCAT
* *
51007910 CGATATGTGA-TTACATGTAAGACCACGTCTGGGA
1 CGATATGTGAGTTACGTGTAAGACCAAGTCTGGGA
51007944 TGTTGGCGTT
Statistics
Matches: 96, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.28
43 42 0.44
44 27 0.28
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (44 bp):
CGATATGTGAGTTACGTGTAAGACCAAGTCTGGGACGTTCGCAT
Found at i:51011818 original size:33 final size:32
Alignment explanation
Indices: 51011769--51011831 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
51011759 CTCGCTGCAA
* *
51011769 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
51011802 TCTGGTGGCCTAGCCACAATATCTATATCT
1 TCTGGTGGCCTAGCCACAATATATATATCT
51011832 ACCCACTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:51018496 original size:39 final size:40
Alignment explanation
Indices: 51018401--51018623 Score: 268
Period size: 39 Copynumber: 5.7 Consensus size: 40
51018391 TTGAATGATG
*
51018401 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
51018439 ATCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51018480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
51018519 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTGAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AAT
*
51018558 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
51018597 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51018624 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 7, Indels: 21
0.86 0.04 0.11
Matches are distributed among these distances:
38 1 0.01
39 91 0.55
40 62 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51018583 original size:79 final size:81
Alignment explanation
Indices: 51018401--51018623 Score: 284
Period size: 79 Copynumber: 2.8 Consensus size: 81
51018391 TTGAATGATG
* *
51018401 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGGCTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
51018463 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAT
51018480 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
51018541 TTGTGCGAGTTACTGAA-
65 TTGTGCGAGATACT-AAT
* * * * *
51018558 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
51018622 TG
66 TG
51018624 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
78 44 0.34
79 59 0.46
80 25 0.20
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAT
Found at i:51018654 original size:79 final size:79
Alignment explanation
Indices: 51018436--51018656 Score: 197
Period size: 79 Copynumber: 2.8 Consensus size: 79
51018426 GCTAAGTGAC
* ** * *
51018436 AATATCCGGGCTAAGATCCGAAGGCATTTGTGCGAGAT-ACT-AATTCCGGGCT-AAGCCCGAAG
1 AATA-CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTGAA-TCCGGGTTAAATCCCGAAG
51018498 GCATTTGTGCGAGATACT
62 GCATTTGTGCGAGATACT
* ** * *
51018516 AATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTGAATCCGGGTTAAGTCCCGAAGGCAT
1 AATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTGAATCCGGGTTAAATCCCGAAGGCAT
51018581 TTGTGCGA-ATTACT
66 TTGTGCGAGA-TACT
* *
51018595 -ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCT-ATATCC-GGTTAAATTCCGAAG
1 AAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTGA-ATCCGGGTTAAATCCCGAAG
51018656 G
62 G
51018657 TACGTGATTT
Statistics
Matches: 121, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
77 1 0.01
78 32 0.26
79 61 0.50
80 27 0.22
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
AATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTGAATCCGGGTTAAATCCCGAAGGCAT
TTGTGCGAGATACT
Found at i:51037978 original size:27 final size:26
Alignment explanation
Indices: 51037873--51037996 Score: 198
Period size: 26 Copynumber: 4.8 Consensus size: 26
51037863 CCTCTTTAAT
* **
51037873 AACTGGGG-AAAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
51037898 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51037923 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51037949 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
51037976 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51037997 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 2, Indels: 5
0.93 0.02 0.05
Matches are distributed among these distances:
25 31 0.33
26 37 0.39
27 26 0.28
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:51038071 original size:20 final size:20
Alignment explanation
Indices: 51038046--51038091 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
51038036 TTATGAATAC
51038046 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
51038065 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
51038086 ATCATG
1 ATCATG
51038092 ATCAAAATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:51038608 original size:8 final size:8
Alignment explanation
Indices: 51038595--51038630 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
51038585 AAATGCTAGA
51038595 ATTTCGGC
1 ATTTCGGC
51038603 ATTTCGGC
1 ATTTCGGC
51038611 ATTTCGGC
1 ATTTCGGC
*
51038619 TTTTCGGC
1 ATTTCGGC
51038627 ATTT
1 ATTT
51038631 ATCGTTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (8 bp):
ATTTCGGC
Found at i:51043782 original size:26 final size:26
Alignment explanation
Indices: 51043686--51043860 Score: 275
Period size: 26 Copynumber: 6.8 Consensus size: 26
51043676 CCTCTTTAAT
*
51043686 AACTGGGGCA-AAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
51043711 AACTGGGGCA-AATCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51043736 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
51043761 AATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51043787 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
51043813 AACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCATAAGCCC-TTTTCAATA
*
51043840 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
51043861 GCACTTCCTC
Statistics
Matches: 140, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
25 54 0.39
26 61 0.44
27 25 0.18
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:51043820 original size:52 final size:51
Alignment explanation
Indices: 51043686--51043860 Score: 271
Period size: 50 Copynumber: 3.4 Consensus size: 51
51043676 CCTCTTTAAT
* * *
51043686 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCA-AATCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
*
51043736 AACTGGGGCAAAGCCCTTTTCAATAAATTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
51043787 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTTCAATA
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCC-TTTTCAATA
*
51043840 AACTAGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
51043861 GCACTTCCTC
Statistics
Matches: 116, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
50 33 0.28
51 23 0.20
52 31 0.27
53 29 0.25
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:51043935 original size:20 final size:20
Alignment explanation
Indices: 51043910--51043956 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
51043900 TTATGAATAC
*
51043910 ATCATGTGCATATCCTA-CA
1 ATCATGTGCATATCATATCA
51043929 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
51043950 ATCATGT
1 ATCATGT
51043957 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:51044021 original size:25 final size:25
Alignment explanation
Indices: 51043993--51044042 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51043983 TAAGTAAACC
* * * *
51043993 CTAGGGGTATAACGGTCTTTTTCAT
1 CTAGGGGCAAAACAGTCATTTTCAT
51044018 CTAGGGGCAAAACAGTCATTTTCAT
1 CTAGGGGCAAAACAGTCATTTTCAT
51044043 AATATAAGGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (25 bp):
CTAGGGGCAAAACAGTCATTTTCAT
Found at i:51045872 original size:43 final size:42
Alignment explanation
Indices: 51045809--51045955 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 42
51045799 ATGTTAAAAT
** * *
51045809 ATGGTCTTACATGTTTTCATATACCATTGCCAACGTCCCATAC
1 ATGGTCTTACATGTAATCATATACCA-TGCCAATGTCCCAGAC
* * * *
51045852 GTGGTCTTACATGAAATCATATAACGATGTCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCATAT-ACCATGCCAATGTCCCAGAC
* * * *
51045895 ATGGTTTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCA-TATACCATGCCAATGTCCCAGAC
51045938 ATGGTCTTACATGTAATC
1 ATGGTCTTACATGTAATC
51045956 TCATCTCAAT
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 80 0.94
44 5 0.06
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCATATACCATGCCAATGTCCCAGAC
Found at i:51073671 original size:49 final size:50
Alignment explanation
Indices: 51073506--51073700 Score: 209
Period size: 49 Copynumber: 4.0 Consensus size: 50
51073496 ATTTATTGTG
* *
51073506 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
51073557 CGATCACGTGTGTAGTACTAAGTGCAGG---CTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
51073604 AGGTCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
51073654 -GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA
51073701 CCTTGTCTAC
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
47 27 0.23
48 11 0.09
49 40 0.34
50 15 0.13
51 25 0.21
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:51077106 original size:40 final size:40
Alignment explanation
Indices: 51077062--51077248 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
51077052 CCAACCCAAT
* * ** *
51077062 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
51077102 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
51077142 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
51077182 TGCCTTCGAGACTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
51077222 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
51077249 TCCTCAATTG
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 131 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:51084517 original size:35 final size:36
Alignment explanation
Indices: 51084458--51084529 Score: 137
Period size: 35 Copynumber: 2.0 Consensus size: 36
51084448 GGCTATACAT
51084458 ATATACATCACCAAAAAGATACGTAATTAACATCAA
1 ATATACATCACCAAAAAGATACGTAATTAACATCAA
51084494 ATATACATCACC-AAAAGATACGTAATTAACATCAA
1 ATATACATCACCAAAAAGATACGTAATTAACATCAA
51084529 A
1 A
51084530 AGTCAATCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 24 0.67
36 12 0.33
ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22
Consensus pattern (36 bp):
ATATACATCACCAAAAAGATACGTAATTAACATCAA
Found at i:51085140 original size:40 final size:40
Alignment explanation
Indices: 51085096--51085322 Score: 328
Period size: 40 Copynumber: 5.7 Consensus size: 40
51085086 CCAACCCAAT
* * * ** *
51085096 TGCCTTTGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
51085136 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
51085176 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
51085216 TGCCTTCGGGTCTTAACCCGGAAATAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
51085256 TGCCTTCGGGTCTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
51085296 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
51085323 TCCTCAATTG
Statistics
Matches: 169, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 169 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:51088006 original size:15 final size:15
Alignment explanation
Indices: 51087986--51088041 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
51087976 ATATCTTGGG
51087986 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
51088001 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
51088016 TTTGTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
51088031 TTTCTTTATTC
1 TTTCTTTATTC
51088042 AGTTTTCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
14 2 0.06
15 29 0.88
16 2 0.06
ACGTcount: A:0.11, C:0.14, G:0.14, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:51088018 original size:30 final size:30
Alignment explanation
Indices: 51087982--51088041 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51087972 TATCATATCT
*
51087982 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
*
51088012 TGGGTTTGTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
51088042 AGTTTTCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.13, G:0.18, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:51090452 original size:40 final size:40
Alignment explanation
Indices: 51090393--51090537 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
51090383 CTCGCACAAG
* * * * *
51090393 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
51090433 GCCTTCAGGACTTAGCCCGGATTTAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
51090473 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
51090514 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
51090538 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Done.