Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_1520
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30364
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.31
Found at i:8939 original size:7 final size:7
Alignment explanation
Indices: 8912--8978 Score: 62
Period size: 7 Copynumber: 9.0 Consensus size: 7
8902 CACTAATTAT
8912 CCTAAAC
1 CCTAAAC
8919 CCATAAACC
1 CC-TAAA-C
8928 CCTAAAC
1 CCTAAAC
8935 CCTAAAC
1 CCTAAAC
*
8942 CCTTAATC
1 CC-TAAAC
8950 CCTAAAC
1 CCTAAAC
**
8957 TTTAAAC
1 CCTAAAC
*
8964 CATAAAAC
1 CCT-AAAC
8972 CCTAAAC
1 CCTAAAC
8979 TATGTCCACT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
7 26 0.53
8 20 0.41
9 3 0.06
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (7 bp):
CCTAAAC
Found at i:8942 original size:15 final size:15
Alignment explanation
Indices: 8912--8978 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
8902 CACTAATTAT
8912 CCTAAACCCATAAACC
1 CCTAAACCC-TAAACC
8928 CCTAAACCCTAAACC
1 CCTAAACCCTAAACC
* *
8943 CTTAATCCCTAAA-C
1 CCTAAACCCTAAACC
** * *
8957 TTTAAACCATAAAAC
1 CCTAAACCCTAAACC
8972 CCTAAAC
1 CCTAAAC
8979 TATGTCCACT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
14 11 0.26
15 23 0.53
16 9 0.21
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.19
Consensus pattern (15 bp):
CCTAAACCCTAAACC
Found at i:8962 original size:22 final size:22
Alignment explanation
Indices: 8913--8979 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8903 ACTAATTATC
* *
8913 CTAAACCCATAAACCCCTAAACC
1 CTAAA-CCATAAAACCCTAAACT
* * *
8936 CTAAACCCTTAATCCCTAAACT
1 CTAAACCATAAAACCCTAAACT
*
8958 TTAAACCATAAAACCCTAAACT
1 CTAAACCATAAAACCCTAAACT
8980 ATGTCCACTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 31 0.86
23 5 0.14
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (22 bp):
CTAAACCATAAAACCCTAAACT
Found at i:9081 original size:7 final size:7
Alignment explanation
Indices: 9069--9243 Score: 57
Period size: 7 Copynumber: 25.1 Consensus size: 7
9059 ATAACCCTTG
9069 AACCATA
1 AACCATA
9076 AACCATA
1 AACCATA
* *
9083 ATCCCTCA
1 AACCAT-A
*
9091 ATCCATA
1 AACCATA
*
9098 ATCCA-A
1 AACCATA
*
9104 AACCTTA
1 AACCATA
*
9111 AA-TAT-
1 AACCATA
9116 AACTCATA
1 AAC-CATA
9124 AACC-TAA
1 AACCAT-A
*
9131 AACCCCTA
1 AA-CCATA
9139 AACC-T-
1 AACCATA
*
9144 AACCCTA
1 AACCATA
9151 AACTCATA
1 AAC-CATA
* *
9159 ATCCCTA
1 AACCATA
9166 AACCCATGCA
1 AA-CCAT--A
*
9176 TACCATA
1 AACCATA
*
9183 AACCTTA
1 AACCATA
9190 AA--ATA
1 AACCATA
9195 TAACCATA
1 -AACCATA
9203 AACTC-TA
1 AAC-CATA
9210 AACCATA
1 AACCATA
* *
9217 TACCCTA
1 AACCATA
9224 AACCAT-
1 AACCATA
9230 AACCATA
1 AACCATA
9237 AA-CATA
1 AACCATA
9243 A
1 A
9244 TGATAATTAA
Statistics
Matches: 127, Mismatches: 21, Indels: 41
0.67 0.11 0.22
Matches are distributed among these distances:
5 8 0.06
6 22 0.17
7 64 0.50
8 26 0.20
9 5 0.04
10 2 0.02
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.21
Consensus pattern (7 bp):
AACCATA
Found at i:9616 original size:23 final size:24
Alignment explanation
Indices: 9573--9617 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
9563 AATTAACAAA
9573 ATTTATAATAACCACAATTTAACT
1 ATTTATAATAACCACAATTTAACT
* *
9597 ATTTATAA-AGCCACATTTTAA
1 ATTTATAATAACCACAATTTAA
9618 ATCAAACCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.44, C:0.16, G:0.02, T:0.38
Consensus pattern (24 bp):
ATTTATAATAACCACAATTTAACT
Found at i:10728 original size:26 final size:26
Alignment explanation
Indices: 10693--10742 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
10683 CCAATGAACC
*
10693 GGGGAATCAGCACTTAGCAACCCTCG
1 GGGGAATCAGCACATAGCAACCCTCG
10719 GGGGAATCAGCACATAGCAACCCT
1 GGGGAATCAGCACATAGCAACCCT
10743 TTCACATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.26, T:0.14
Consensus pattern (26 bp):
GGGGAATCAGCACATAGCAACCCTCG
Found at i:16897 original size:1 final size:1
Alignment explanation
Indices: 16891--16940 Score: 100
Period size: 1 Copynumber: 50.0 Consensus size: 1
16881 AGGAATATTC
16891 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16941 GCCTCCCATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:21855 original size:70 final size:70
Alignment explanation
Indices: 21718--21857 Score: 203
Period size: 70 Copynumber: 2.0 Consensus size: 70
21708 CTTTCCAAGG
* * *
21718 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTGAGGTATTTTAATTTTTTT
1 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCGAGGTATTTTAATTATGTT
21783 TTAAA
66 TTAAA
* *
21788 AAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCGAG-CACGCCGAGGTATTTTAGTTATG
1 AAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAAGACACG-CGAGGTATTTTAATTATG
21851 TTTTAAA
64 TTTTAAA
21858 TTGACTCATA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
69 5 0.08
70 58 0.92
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGCGAGGTATTTTAATTATGTT
TTAAA
Found at i:22007 original size:69 final size:69
Alignment explanation
Indices: 21899--22179 Score: 391
Period size: 69 Copynumber: 4.1 Consensus size: 69
21889 TTTAATTTGT
* **
21899 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTTCAAAATCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC-GAGGTAATTTCAA
21964 TTTCTG
64 TTTCTG
*
21970 -TTTCAAATTCAACTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCGAGGTAATTT-AATT
1 TTTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCGAGGTAATTTCAATT
22033 TCTG
66 TCTG
22037 TTTTCAAAATCAACTTATATTGCGAGAAATGAGTT-AGCCT-AGGACAC-CGAGGTAA-TTCAAT
1 TTTTCAAAATCAAC-TATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCGAGGTAATTTCAAT
22098 TT-TG
65 TTCTG
* * *
22102 TTTTTCAAAATCAACTATA-TGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAA
1 -TTTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAGGACACG-CGAGGTAATTTCAA
22166 TTTCTG
64 TTTCTG
22172 -TTTCAAAA
1 TTTTCAAAA
22180 AAAAAAATCA
Statistics
Matches: 192, Mismatches: 8, Indels: 23
0.86 0.04 0.10
Matches are distributed among these distances:
64 15 0.08
65 13 0.07
66 33 0.17
67 15 0.08
68 41 0.21
69 60 0.31
70 15 0.08
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (69 bp):
TTTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCGAGGTAATTTCAATT
TCTG
Found at i:22140 original size:133 final size:139
Alignment explanation
Indices: 21889--22644 Score: 510
Period size: 138 Copynumber: 5.4 Consensus size: 139
21879 AGTTAAGCCT
* * **
21889 TTTAATTTGT-TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
* *
21953 GGTAATTTCAATTTCTGTTTCAAATTCAACTATATTGCGAGAAATGAGTTGAGCCTCAGGACACG
66 GGTAATTTCAATTTCTGTTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
22018 -CGAGGTAA
131 TCGAGGTAA
*
22026 TTTAATTTCTGTTTTCAAAATCAACTTATATTGCGAGAAATGAGTT-AGCCT-AGGACAC-C-GA
1 TTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
22087 GGTAA-TTCAATTT-TGTTTTTCAAAATCAACTATA-TGCGAGAAATGAGTTGAGCCTCAAGACA
66 GGTAATTTCAATTTCTG--TTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* *
22149 CGTTGAGGTAT
129 CGTCGAGGTAA
* **
22160 TTTCAATTTCTG-TTTCAAAAAAAAAAATCAACTTATA-TGCGAGAGGTGAGTTGAGCCTC-GGT
1 TTT-AATTTCTGTTTTC-------AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG-
* * * **
22222 TCACATGCTGAGGTATTTTCAATTTCTGTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGT
57 --ACACGCTGAGGTAATTTCAATTTCTGTTT----CAAAATCAACT-ATATTGCGAGAAATGAGT
* * * *
22287 TGAGCTTCAGATACAC-ACG-TGT-A
115 TGAGCCTCA-AGACACGTCGAGGTAA
** * * *
22310 TTTAA---------T-----TCAACTCATA-TGCGAGAGGTGAGTTGAGCCTCAGGTCACACCGA
1 TTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
* *
22360 GGTATTTTCCATTTCTGTTTTCATTTATTTTTTGAAAGAATCAACTCATA-TGCGAGAAATGAGT
66 GGTAATTTCAATTTCTG-TTTC-------------AA-AATCAACT-ATATTGCGAGAAATGAGT
* *
22424 TGAGCCTCAAGACACATTGA-GTAA
115 TGAGCCTCAAGACACGTCGAGGTAA
* * * *
22448 TTCAA-TTCTGTTTTCAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 TTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
*
22512 GGT-ATTTCAA-TTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGA
66 GGTAATTTCAATTTCTG--TTTCAAAA-TCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGA
22575 CACG-CTGA-GTAA
127 CACGTC-GAGGTAA
*
22587 TTTCAA-TTCTGTTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCAG
1 TTT-AATTTCTGTTTTC---AAAATCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCAG
22645 TTCACATGTG
Statistics
Matches: 497, Mismatches: 52, Indels: 134
0.73 0.08 0.20
Matches are distributed among these distances:
127 21 0.04
128 3 0.01
129 31 0.06
130 2 0.00
132 2 0.00
133 37 0.07
134 36 0.07
135 9 0.02
136 12 0.02
137 41 0.08
138 60 0.12
139 36 0.07
140 24 0.05
141 22 0.04
142 3 0.01
143 33 0.07
144 3 0.01
145 1 0.00
146 10 0.02
147 8 0.02
148 2 0.00
149 2 0.00
150 18 0.04
151 25 0.05
152 51 0.10
153 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (139 bp):
TTTAATTTCTGTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
GGTAATTTCAATTTCTGTTTCAAAATCAACTATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TCGAGGTAA
Found at i:22257 original size:76 final size:74
Alignment explanation
Indices: 21904--22291 Score: 302
Period size: 69 Copynumber: 5.4 Consensus size: 74
21894 TTTGTTTTTC
* * * *
21904 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTTATA-TGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT
*
21969 GTTT-----C
65 GTTTAAAAAA
* ** * *
21974 AAATTCAAC-TATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC-GAGGTAATTT-AATTTCT
1 AAAATCAACTTATA-TGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT
**
22036 GTTT----TC
65 GTTTAAAAAA
** * *
22042 AAAATCAACTTATATTGCGAGAAATGAGTT-AGCCT-AGGACAC-C-GAGGTA-ATTCAATTT-T
1 AAAATCAACTTATA-TGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCT
***
22101 GTTT---TTC
65 GTTTAAAAAA
** *
22108 AAAATCAAC-TATATGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAAATCAACTTATATGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
22172 TTTCAAAAAAA
66 TTT--AAAAAA
* *
22183 AAAATCAACTTATATGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTT
1 AAAATCAACTTATATGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCTGAGGTATTTTCAATTT
22247 CTGTTT-AAAAA
63 CTGTTTAAAAAA
*
22258 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAATCAACTTATA-TGCGAGAGGTGAGTTGAGC
22292 TTCAGATACA
Statistics
Matches: 279, Mismatches: 19, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
64 15 0.05
65 16 0.06
66 29 0.10
67 18 0.06
68 30 0.11
69 60 0.22
70 13 0.05
75 28 0.10
76 43 0.15
78 27 0.10
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (74 bp):
AAAATCAACTTATATGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTG
TTTAAAAAA
Found at i:22319 original size:76 final size:76
Alignment explanation
Indices: 22108--22305 Score: 233
Period size: 76 Copynumber: 2.6 Consensus size: 76
22098 TTTGTTTTTC
** * * *
22108 AAAATCAACT-ATATGCGAGAAATGAGTTGAGCCTC-A-AGACACGTTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATGCGAGAGGTGAGTTGAGCCTCGATACACACGCTGAGGTATATTCAATTTC
22170 TGTTTCAAAAAAA
66 TGTTT--AAAAAA
* * * * *
22183 AAAATCAACTTATATGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTC
1 AAAATCAACTCATATGCGAGAGGTGAGTTGAGCCTCGATACACACGCTGAGGTATATTCAATTTC
22248 TGTTT-AAAAA
66 TGTTTAAAAAA
*
22258 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATACACACG
1 AAAATCAACTCATA-TGCGAGAGGTGAGTTGAGCCTC-GATACACACG
22306 TGTATTTAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
75 28 0.26
76 44 0.42
77 7 0.07
78 27 0.25
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (76 bp):
AAAATCAACTCATATGCGAGAGGTGAGTTGAGCCTCGATACACACGCTGAGGTATATTCAATTTC
TGTTTAAAAAA
Found at i:22365 original size:54 final size:54
Alignment explanation
Indices: 22262--22366 Score: 151
Period size: 53 Copynumber: 1.9 Consensus size: 54
22252 TAAAAAAAAA
* *
22262 TCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATACACACGTGTATTTAAT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATACACACGGGTATTTAAT
*
22316 TCAACTCATA-TGCGAGAGGTGAGTTGAGCCTCAGGT-CACACCGAGGTATTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATACACA-CG-GGTATTT
22367 TCCATTTCTG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
52 4 0.09
53 26 0.57
54 16 0.35
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (54 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATACACACGGGTATTTAAT
Found at i:22567 original size:71 final size:69
Alignment explanation
Indices: 22400--22643 Score: 359
Period size: 71 Copynumber: 3.5 Consensus size: 69
22390 TTTGAAAGAA
* *
22400 TCAACTCATA-TGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGTAATTCAATTCTGTTTTC-
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTATTTCAATTCTGTTTTCA
22463 AAAT
66 AAAT
22467 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTCAATTCTGCTTTT
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-GTATTTCAATTCTG-TTTT
22532 CAAAAT
64 CAAAAT
* * *
22538 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGTAATTTCAATTCTGTTGTC
1 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGT-ATTTCAATTCTGTTTTC
*
22603 AAAAAAA
65 --AAAAT
22610 TCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCA
1 TCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
22644 GTTCACATGT
Statistics
Matches: 163, Mismatches: 6, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
67 10 0.06
68 33 0.20
69 13 0.08
70 11 0.07
71 62 0.38
72 34 0.21
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (69 bp):
TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGTATTTCAATTCTGTTTTCA
AAAT
Found at i:23368 original size:22 final size:22
Alignment explanation
Indices: 23335--23397 Score: 90
Period size: 22 Copynumber: 2.9 Consensus size: 22
23325 GCAACCATGA
*
23335 AGCAGCCTCATACCTCCACTAC
1 AGCAGCCCCATACCTCCACTAC
* *
23357 AGCGGCCCCATACCCCCACTAC
1 AGCAGCCCCATACCTCCACTAC
*
23379 AGCAGTCCCATACCTCCAC
1 AGCAGCCCCATACCTCCAC
23398 AGCCCTCGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.25, C:0.49, G:0.11, T:0.14
Consensus pattern (22 bp):
AGCAGCCCCATACCTCCACTAC
Found at i:26060 original size:28 final size:28
Alignment explanation
Indices: 26004--26061 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
25994 TACTATTATA
* * *
26004 ATTATAGTTTTATAAATAATTTACTTTT
1 ATTATAATTTTATAAATAATTCACATTT
26032 ATTATAATTTTATAAATAAATTCA-ATTT
1 ATTATAATTTTATAAAT-AATTCACATTT
26060 AT
1 AT
26062 AATGACAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTATAATTTTATAAATAATTCACATTT
Done.