Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 113 of 213
Found at i:32271735 original size:33 final size:33
Alignment explanation
Indices: 32271697--32271952 Score: 151
Period size: 33 Copynumber: 7.6 Consensus size: 33
32271687 ATGATACAGT
*
32271697 GGAATCAGCACTTAGCAACCACCAATGAATCAG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
* *
32271730 GGAATCAACACTTAGCAACC-CC--T---TAGG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
* * * *
32271757 GGAATCATCACTTACCAACCCCCTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T-GAAT-CGG
*
32271798 TGGAATCAGCACTTAGTAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATCGG
*
32271832 GGAATCAGCACTTAGCAACC-CC--T---T-AG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
* * *
32271858 GGAATCATCACTTAGCAACCCCCTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T-GAAT-CGG
32271899 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATCGG
32271933 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
32271953 CCTTAGGGGA
Statistics
Matches: 174, Mismatches: 18, Indels: 62
0.69 0.07 0.24
Matches are distributed among these distances:
26 18 0.10
27 21 0.12
28 3 0.02
29 1 0.01
30 3 0.02
31 1 0.01
32 4 0.02
33 58 0.33
34 6 0.03
35 7 0.04
36 3 0.02
38 2 0.01
39 5 0.03
40 1 0.01
41 9 0.05
42 32 0.18
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.20
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATCGG
Found at i:32271920 original size:101 final size:102
Alignment explanation
Indices: 32271652--32272049 Score: 641
Period size: 102 Copynumber: 4.0 Consensus size: 102
32271642 CCAGTGATTC
* * * *
32271652 GGGGAATCAACACTTAGCAACCCCTTTCACATTCAATGATACAGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAA-AATACGGTGGAATCAGCACTTAGCAACC
* *
32271717 ACCAATGAATCAGGGAATCAACACTTAGCAACCCCTTA
65 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
* * *
32271755 GGGGAATCATCACTTACCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGTAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
32271820 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
*
32271857 -GGGAATCATCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
32271921 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
32271958 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC-
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
32272022 CC--T---T-GGGGAATCAGCACTTAGCAACCCC
66 CCAATGAATCGGGGAATCAGCACTTAGCAACCCC
32272050 CTTTATATTC
Statistics
Matches: 282, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
95 24 0.09
96 1 0.00
99 1 0.00
101 101 0.36
102 123 0.44
103 32 0.11
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.21
Consensus pattern (102 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTA
Found at i:32271982 original size:203 final size:197
Alignment explanation
Indices: 32271653--32272049 Score: 634
Period size: 203 Copynumber: 2.0 Consensus size: 197
32271643 CAGTGATTCG
* *
32271653 GGGAATCAACACTTAGCAACCCCTTTCACATTCAATGATACAGTGGAATCAGCACTTAGCAACCA
1 GGGAATCAACACTTAGCAACCCCCTTCACATTCAATAATACAGTGGAATCAGCACTTAGCAACCA
*
32271718 CCAATGAATCAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCATCACTTACCAACCCCCTTC
66 CCAATGAATCAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAACACTTACCAACCCCCTTC
*
32271783 ACATTTAAAATACGGTGGAATCAGCACTTAGTAACCACCAATGAATCGGGGAATCAGCACTTAGC
131 ACATTTAAAATACGGTGGAATCAGCACTTAGCAACC-CC--T---T-GGGGAATCAGCACTTAGC
32271848 AACCCCTTA
189 AACCCCTTA
* * *
32271857 GGGAATCATCACTTAGCAACCCCCTTCACATTTAA-AATACGGTGGAATCAGCACTTAGCAACCA
1 GGGAATCAACACTTAGCAACCCCCTTCACATTCAATAATACAGTGGAATCAGCACTTAGCAACCA
* * *
32271921 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTAGGGGAATCAACACTTAGCAACCCCCTTC
66 CCAATGAATCAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAACACTTACCAACCCCCTTC
32271986 ACATTTAAAATACGGTGGAATCAGCACTTAGCAACCCCTTGGGGAATCAGCACTTAGCAACCCC
131 ACATTTAAAATACGGTGGAATCAGCACTTAGCAACCCCTTGGGGAATCAGCACTTAGCAACCCC
32272050 CTTTATATTC
Statistics
Matches: 183, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
196 24 0.13
197 1 0.01
200 1 0.01
202 2 0.01
203 123 0.67
204 32 0.17
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.21
Consensus pattern (197 bp):
GGGAATCAACACTTAGCAACCCCCTTCACATTCAATAATACAGTGGAATCAGCACTTAGCAACCA
CCAATGAATCAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAACACTTACCAACCCCCTTC
ACATTTAAAATACGGTGGAATCAGCACTTAGCAACCCCTTGGGGAATCAGCACTTAGCAACCCCT
TA
Found at i:32272153 original size:51 final size:51
Alignment explanation
Indices: 32272073--32272217 Score: 204
Period size: 51 Copynumber: 2.8 Consensus size: 51
32272063 GATACTGGTT
* *
32272073 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
* * *
32272124 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATA
*
32272175 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
32272218 TTCACTTTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
50 3 0.04
51 76 0.93
52 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
Found at i:32274843 original size:33 final size:35
Alignment explanation
Indices: 32274796--32274865 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 35
32274786 ATATATATAC
32274796 TAAACAATAAAATAATAA-AATAATAAA-TATTATT
1 TAAACAATAAAATAA-AATAATAATAAACTATTATT
*
32274830 TAAA-AATAAAATAAAATATTAATAAACTATTATT
1 TAAACAATAAAATAAAATAATAATAAACTATTATT
32274864 TA
1 TA
32274866 TTTATTTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 2 0.06
33 18 0.55
34 13 0.39
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (35 bp):
TAAACAATAAAATAAAATAATAATAAACTATTATT
Found at i:32280008 original size:40 final size:40
Alignment explanation
Indices: 32279925--32280187 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
32279915 TTGAATGCTG
* * * * * *
32279925 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
32279965 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
32280005 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
32280045 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32280085 GCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32280125 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32280164 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32280188 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.17
40 157 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:32297562 original size:46 final size:46
Alignment explanation
Indices: 32297398--32297573 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
32297388 TGTAACCCGC
* *
32297398 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
32297444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * * *
32297494 --TTCA-CGAACTCAGACTTAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
32297537 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
32297574 TGCTCAACCT
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 60 0.57
47 27 0.25
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32297565 original size:93 final size:93
Alignment explanation
Indices: 32297406--32297576 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32297396 GCCCATAAGT
* *
32297406 GAACTCAGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
32297471 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32297499 GAACTCAGACTTAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
32297563 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
32297577 TCAACCTTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32304684 original size:42 final size:42
Alignment explanation
Indices: 32304626--32304734 Score: 141
Period size: 42 Copynumber: 2.6 Consensus size: 42
32304616 GAATGCCAAA
* *
32304626 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT-GATGCCGA-T
* * *
32304669 GTCCTAGACA-GGTCTTACAGGAAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATGATGCCGAT
32304710 GTCCCAGACATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
32304735 ATCATAAGTC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 16 0.28
42 33 0.58
43 8 0.14
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATGATGCCGAT
Found at i:32307898 original size:46 final size:46
Alignment explanation
Indices: 32307845--32307981 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
32307835 TATATATACA
* * * *
32307845 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32307891 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
32307937 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
32307982 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:32308016 original size:47 final size:47
Alignment explanation
Indices: 32307909--32308103 Score: 196
Period size: 46 Copynumber: 4.1 Consensus size: 47
32307899 ACACGTTTCG
* * * * * * *
32307909 CATTAGCCATTCGGCTTTACCTCATATCTATCTCATACACATT--TCG
1 CATTAGCCATTCGGCCTTACCACATATATA-CACGTTCACATTCATCA
*
32307955 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
* *
32308002 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTA-C-CAC--ATATATACACGTTCACATTCATCA
* * * *
32308053 CATTTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CA-TTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
32308101 CAT
1 CAT
32308104 AACATCCTAA
Statistics
Matches: 127, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
45 8 0.06
46 27 0.21
47 21 0.17
48 25 0.20
49 3 0.02
50 2 0.02
51 25 0.20
52 16 0.13
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACATATATACACGTTCACATTCATCA
Found at i:32308048 original size:51 final size:49
Alignment explanation
Indices: 32307909--32308103 Score: 192
Period size: 51 Copynumber: 4.1 Consensus size: 49
32307899 ACACGTTTCG
* * * * * *
32307909 CATTAGCCATTCGGCTTTA-CCTCATATCTATCTCA-TACACATT--TCG
1 CATTAGCCATTCGGCCTTATCCACATATATAT-ACAGTTCACATTCATCA
32307955 CATTAGCCATTCGGCCTTA-CCAC--ATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCCACATATATATACA-GTTCACATTCATCA
*
32308002 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATC-CACATATATATACA-GTTCACATTCATCA
* * *
32308053 CATTTTGCCATTCGGCCTTAT-CTCATATATACACA-TTCACATTCATCA
1 CA-TTAGCCATTCGGCCTTATCCACATATATATACAGTTCACATTCATCA
32308101 CAT
1 CAT
32308104 AACATCCTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
43 2 0.02
44 5 0.04
45 7 0.05
46 21 0.16
47 21 0.16
48 16 0.12
49 3 0.02
50 12 0.09
51 25 0.19
52 17 0.13
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (49 bp):
CATTAGCCATTCGGCCTTATCCACATATATATACAGTTCACATTCATCA
Found at i:32308099 original size:48 final size:48
Alignment explanation
Indices: 32307960--32308103 Score: 191
Period size: 52 Copynumber: 2.9 Consensus size: 48
32307950 TTTCGCATTA
* **
32307960 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACA-TTG
1 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATTTG
* *
32308007 GCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTTT
1 GCCATTCGGCCTTAT--CACATATATACACA--TTCACATTCATCACATTTG
*
32308059 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
32308104 AACATCCTAA
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
47 14 0.16
48 16 0.19
49 11 0.13
50 12 0.14
51 15 0.18
52 17 0.20
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATTTG
Found at i:32308104 original size:25 final size:25
Alignment explanation
Indices: 32308024--32308104 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
32308014 GGCCTTATCA
*
32308024 CACATATATATACAGGTTCACATTCAT
1 CACATATATACACA--TTCACATTCAT
* * * *
32308051 CACAT-TTTGC-CATTCGGCCTT-AT
1 CACATATATACACATTC-ACATTCAT
*
32308074 CTCATATATACACATTCACATTCAT
1 CACATATATACACATTCACATTCAT
32308099 CACATA
1 CACATA
32308105 ACATCCTAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
23 9 0.23
24 9 0.23
25 14 0.36
26 2 0.05
27 5 0.13
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (25 bp):
CACATATATACACATTCACATTCAT
Found at i:32322368 original size:39 final size:40
Alignment explanation
Indices: 32322268--32322491 Score: 264
Period size: 39 Copynumber: 5.7 Consensus size: 40
32322258 TTGAATGATC
* *
32322268 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-AT
*
32322309 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
32322348 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
32322387 TCCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32322426 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
32322465 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
32322492 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 12, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 77 0.47
40 74 0.45
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:32322498 original size:40 final size:40
Alignment explanation
Indices: 32322269--32322491 Score: 244
Period size: 40 Copynumber: 5.6 Consensus size: 40
32322259 TGAATGATCT
* * *
32322269 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * * *
32322308 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
32322349 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32322388 CCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
32322426 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
32322467 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
32322492 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
39 73 0.46
40 75 0.47
41 11 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:32322522 original size:79 final size:79
Alignment explanation
Indices: 32322321--32322524 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
32322311 GGACTAAGAT
** * * * *
32322321 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGCTAAATCCCGAAGGCAATTGTGCGAGATACTA
*
32322385 ATTCCGGGCTAAAC
66 ATACCGGGCTAAAC
** * *
32322399 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGCTAAATCCCGAAGGCAATTGTGCGAGATACTA
**
32322463 ATAACCGGGCTATGTC
66 AT-ACCGGGCTA-AAC
* * *
32322479 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGCTAAATCCCGAAGG
32322525 TACGTGATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 35 0.33
79 47 0.44
80 25 0.23
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGCTAAATCCCGAAGGCAATTGTGCGAGATACTA
ATACCGGGCTAAAC
Found at i:32325738 original size:40 final size:40
Alignment explanation
Indices: 32325683--32325845 Score: 265
Period size: 40 Copynumber: 4.1 Consensus size: 40
32325673 CGGATGATAA
32325683 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
32325723 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
32325763 CTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
32325803 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
32325843 CCG
1 CCG
32325846 ATTAAATCCC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
39 2 0.02
40 113 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:32333790 original size:40 final size:40
Alignment explanation
Indices: 32333735--32333909 Score: 255
Period size: 40 Copynumber: 4.4 Consensus size: 40
32333725 GATGATAACC
32333735 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
32333775 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
32333815 GGCTAAGTCTCGAACGCAATTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
32333855 GGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
32333894 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
32333910 TACTTGGCTT
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.12
40 107 0.88
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:32335749 original size:40 final size:40
Alignment explanation
Indices: 32335719--32335928 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
32335709 GGATAAAGAT
* * * *
32335719 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
32335759 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
32335799 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
32335839 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
32335879 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
32335918 CCGAAGGCATT
1 CCGAAGGCATT
32335929 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:32335803 original size:80 final size:80
Alignment explanation
Indices: 32335666--32335928 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
32335656 TTGAATGCTG
* * * * * * *
32335666 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATAAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
32335729 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
32335746 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
32335811 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
32335826 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
32335890 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
32335905 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32335929 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:32335880 original size:120 final size:120
Alignment explanation
Indices: 32335666--32335928 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
32335656 TTGAATGCTG
* * *
32335666 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATAAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATAAAGATCCGAAGGCATT
* *
32335730 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * * *
32335786 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATAAAGAT-CCGAAGGCAT
* ** * *
32335849 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
32335905 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
32335929 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATAAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:32335948 original size:79 final size:80
Alignment explanation
Indices: 32335719--32335963 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
32335709 GGATAAAGAT
* * * * * ** * *
32335719 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
32335783 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
32335799 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
32335864 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
32335879 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
32335943 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
32335957 CCGAAGG
1 CCGAAGG
32335964 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:32343379 original size:40 final size:40
Alignment explanation
Indices: 32343296--32343558 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
32343286 TTGAATGCTG
* * * * * *
32343296 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
32343336 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
32343376 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
32343416 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32343456 GCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
32343496 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
32343535 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
32343559 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.17
40 157 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:32345032 original size:26 final size:26
Alignment explanation
Indices: 32344946--32345037 Score: 96
Period size: 26 Copynumber: 3.3 Consensus size: 26
32344936 TTACAATGCT
32344946 TTTGTGGCGTATTTGAAAGGAAAGCC
1 TTTGTGGCGTATTTGAAAGGAAAGCC
* *
32344972 TTTGTGGCGAGAATTGATTGAAAATGG-ATGCC
1 TTTGTGGC--GTA-T--TTG-AAA-GGAAAGCC
32345004 TTTGTGGCGTATTTGAAAGGAAAGCC
1 TTTGTGGCGTATTTGAAAGGAAAGCC
32345030 TTTGTGGC
1 TTTGTGGC
32345038 AAGTACAGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
25 2 0.04
26 23 0.43
27 3 0.06
28 2 0.04
29 2 0.04
30 2 0.04
31 3 0.06
32 15 0.28
33 2 0.04
ACGTcount: A:0.25, C:0.11, G:0.32, T:0.33
Consensus pattern (26 bp):
TTTGTGGCGTATTTGAAAGGAAAGCC
Found at i:32345036 original size:58 final size:57
Alignment explanation
Indices: 32344941--32345068 Score: 202
Period size: 58 Copynumber: 2.2 Consensus size: 57
32344931 GGGTGTTACA
* **
32344941 ATGCTTTTGTGGCGTATTTGAAAGGAAAGCCTTTGTGGCGAGAATTGATTGAAAATGG
1 ATGCTTTTGTGGCGTATTTGAAAGGAAAGCCTTTGTGGCAAGAACAGATTGAAAAT-G
* *
32344999 ATGCCTTTGTGGCGTATTTGAAAGGAAAGCCTTTGTGGCAAGTACAGATTGAAAATG
1 ATGCTTTTGTGGCGTATTTGAAAGGAAAGCCTTTGTGGCAAGAACAGATTGAAAATG
32345056 ATGCTTTTGTGGC
1 ATGCTTTTGTGGC
32345069 AAATCTCTGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
57 13 0.20
58 51 0.80
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.33
Consensus pattern (57 bp):
ATGCTTTTGTGGCGTATTTGAAAGGAAAGCCTTTGTGGCAAGAACAGATTGAAAATG
Found at i:32345121 original size:31 final size:31
Alignment explanation
Indices: 32345086--32345152 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
32345076 TGAATAGAAG
* *
32345086 GCCTTCATGGCGGGTACTGACTGAAAAGGAT
1 GCCTTCATGGCGAGTACTAACTGAAAAGGAT
** * *
32345117 GCCTTTTTGGCGAGTACTAATTGAAAAGGGT
1 GCCTTCATGGCGAGTACTAACTGAAAAGGAT
32345148 GCCTT
1 GCCTT
32345153 TGTGGCAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (31 bp):
GCCTTCATGGCGAGTACTAACTGAAAAGGAT
Found at i:32345153 original size:31 final size:31
Alignment explanation
Indices: 32345093--32345158 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
32345083 AAGGCCTTCA
* * *
32345093 TGGCGGGTACTGACTGAAAAGGATGCCTTTT
1 TGGCGAGTACTAACTGAAAAGGATGCCTTTG
* *
32345124 TGGCGAGTACTAATTGAAAAGGGTGCCTTTG
1 TGGCGAGTACTAACTGAAAAGGATGCCTTTG
32345155 TGGC
1 TGGC
32345159 AAAGTTTTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.29
Consensus pattern (31 bp):
TGGCGAGTACTAACTGAAAAGGATGCCTTTG
Found at i:32350510 original size:85 final size:85
Alignment explanation
Indices: 32350405--32350573 Score: 295
Period size: 85 Copynumber: 2.0 Consensus size: 85
32350395 TTATAGGGTA
*
32350405 GGTCTCTCCCTCTCAGCACACACCTTTTACTTCCTCA-TTTTCAGGGTGGTTTATCTGGTACAAA
1 GGTCTCTCCCTCTCAGCACACACCTTTTACTT-CTCATTTTTCAGAGTGGTTTATCTGGTACAAA
32350469 TATAGCTGGCTGAGAGTGACG
65 TATAGCTGGCTGAGAGTGACG
* *
32350490 GGTCTCTCCCTCTCAGCACACACCTTTTACTTCTTATTTTTCAGAGTGGTTTATCTGGTACAAGT
1 GGTCTCTCCCTCTCAGCACACACCTTTTACTTCTCATTTTTCAGAGTGGTTTATCTGGTACAAAT
32350555 ATAGCTGGCTGAGAGTGAC
66 ATAGCTGGCTGAGAGTGAC
32350574 ATGGACTGAG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
84 3 0.04
85 77 0.96
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (85 bp):
GGTCTCTCCCTCTCAGCACACACCTTTTACTTCTCATTTTTCAGAGTGGTTTATCTGGTACAAAT
ATAGCTGGCTGAGAGTGACG
Found at i:32353803 original size:18 final size:17
Alignment explanation
Indices: 32353774--32353812 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 17
32353764 AACACAGAAA
32353774 AAAAGAAAAAATTAGTGAG
1 AAAAGAAAAAA-TAGT-AG
32353793 AAAAG-AAAAATAGTAG
1 AAAAGAAAAAATAGTAG
32353809 AAAA
1 AAAA
32353813 ATTAGGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 4 0.20
18 5 0.25
19 5 0.25
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (17 bp):
AAAAGAAAAAATAGTAG
Found at i:32357382 original size:4 final size:4
Alignment explanation
Indices: 32357373--32357398 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32357363 TTAATAAACT
32357373 ATTA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA AT
32357399 ATCACCAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:32357829 original size:23 final size:23
Alignment explanation
Indices: 32357798--32357848 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
32357788 ACCTACTTTC
* *
32357798 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
*
32357821 TTACAGTAGTAATTTTTGGGATA
1 TTACAGTAGTAATTTTCGGGATA
32357844 TTACA
1 TTACA
32357849 CCGGCCACGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:32373688 original size:7 final size:7
Alignment explanation
Indices: 32373672--32373713 Score: 77
Period size: 7 Copynumber: 6.1 Consensus size: 7
32373662 CCCCATATTC
32373672 TTCT-TT
1 TTCTCTT
32373678 TTCTCTT
1 TTCTCTT
32373685 TTCTCTT
1 TTCTCTT
32373692 TTCTCTT
1 TTCTCTT
32373699 TTCTCTT
1 TTCTCTT
32373706 TTCTCTT
1 TTCTCTT
32373713 T
1 T
32373714 CCTTGTTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.11
7 31 0.89
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (7 bp):
TTCTCTT
Found at i:32373948 original size:15 final size:14
Alignment explanation
Indices: 32373918--32373951 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
32373908 CCTTTTCCTA
*
32373918 CTCTTTTTTCTTTT
1 CTCTTTTTTCTCTT
32373932 CTCTTTTCTTCTCTT
1 CTCTTTT-TTCTCTT
32373947 CTCTT
1 CTCTT
32373952 CTTCATTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
CTCTTTTTTCTCTT
Found at i:32380902 original size:20 final size:20
Alignment explanation
Indices: 32380877--32380915 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
32380867 ACATTGATAA
32380877 GGGATATGTCATTGTATGTT
1 GGGATATGTCATTGTATGTT
32380897 GGGATATGTCATTGTATGT
1 GGGATATGTCATTGTATGT
32380916 CTATGTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.31, T:0.44
Consensus pattern (20 bp):
GGGATATGTCATTGTATGTT
Found at i:32392735 original size:31 final size:31
Alignment explanation
Indices: 32392699--32392761 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
32392689 TTGCCAAATA
* *
32392699 ACTTAAATAAAAACTTTTT-AATAGTTTAATG
1 ACTTAAATAAAAA-TTTTTGAATAATTCAATG
*
32392730 ACTTAAATGAAAATTTTTGAATAATTCAATG
1 ACTTAAATAAAAATTTTTGAATAATTCAATG
32392761 A
1 A
32392762 TCAAAATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (31 bp):
ACTTAAATAAAAATTTTTGAATAATTCAATG
Found at i:32397471 original size:41 final size:41
Alignment explanation
Indices: 32397414--32397529 Score: 173
Period size: 41 Copynumber: 2.9 Consensus size: 41
32397404 AGTAAGATGA
* *
32397414 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAATAT
*
32397455 TTCAGACTTTACGTCTAGCAAGCTTAATGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAATAT
*
32397496 GTCAGACTTTACGTC-AGCAGGC-TAATTGCCGGTG
1 TTCAGACTTTACGTCTAGCAGGCTTAA-TGCCGGTG
32397530 TACTGAATTA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.04
40 14 0.20
41 52 0.75
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAATAT
Found at i:32407756 original size:20 final size:20
Alignment explanation
Indices: 32407724--32407779 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
32407714 TCCTTTTACG
32407724 TTCCTCTCTTTTTTTTCTT-T
1 TTCCT-TCTTTTTTTTCTTCT
32407744 TTCCTTCTATTTTTTTCTTCT
1 TTCCTTCT-TTTTTTTCTTCT
32407765 TT-CTTCTTTTCTTTT
1 TTCCTTCTTTT-TTTT
32407780 TTTATCTCTG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.18
20 24 0.73
21 3 0.09
ACGTcount: A:0.02, C:0.23, G:0.00, T:0.75
Consensus pattern (20 bp):
TTCCTTCTTTTTTTTCTTCT
Found at i:32408448 original size:63 final size:63
Alignment explanation
Indices: 32408324--32408448 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 63
32408314 GTAGGCTGTG
* * * * * * *
32408324 TAACTCACTATTTTGGAATTAGAATTATACGGGCCAGAGACACGGGCGTGTGTCCAGGCCATA
1 TAACTCACTATTTTGGAATCAAAATCATACAGGCCAAAGACACGAGCGTGTGTCCAAGCCATA
*
32408387 TAACTCACTATTTTGGAATCAAAATCATACAGGCCAAAGACACGAGCGTGTGTCTAAGCCAT
1 TAACTCACTATTTTGGAATCAAAATCATACAGGCCAAAGACACGAGCGTGTGTCCAAGCCAT
32408449 GTTAGAGGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (63 bp):
TAACTCACTATTTTGGAATCAAAATCATACAGGCCAAAGACACGAGCGTGTGTCCAAGCCATA
Found at i:32410140 original size:43 final size:43
Alignment explanation
Indices: 32410085--32410167 Score: 141
Period size: 43 Copynumber: 1.9 Consensus size: 43
32410075 TAGCACAACA
32410085 ATTAAATGAATGATATTCTAGGATCTTTAGCTATATTAGTGCG
1 ATTAAATGAATGATATTCTAGGATCTTTAGCTATATTAGTGCG
*
32410128 ATTAAA-GTAATGATATTCTAGGATTTTTAGCTATATTAGT
1 ATTAAATG-AATGATATTCTAGGATCTTTAGCTATATTAGT
32410168 AGATGTATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (43 bp):
ATTAAATGAATGATATTCTAGGATCTTTAGCTATATTAGTGCG
Found at i:32413702 original size:40 final size:40
Alignment explanation
Indices: 32413538--32413702 Score: 174
Period size: 40 Copynumber: 4.1 Consensus size: 40
32413528 CGGAATTTAA
** *
32413538 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32413578 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
32413618 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTGGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
32413658 CCGGATATGGTCACTTAGCACAAA-GCCTTCGAGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32413698 CCGGA
1 CCGGA
32413703 CATCATTCAA
Statistics
Matches: 104, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 90 0.87
41 10 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32421912 original size:40 final size:38
Alignment explanation
Indices: 32421875--32422003 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 38
32421865 GCTACTCGTT
*
32421875 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTA-CCCGGTT-TAGTAACTCGCA
32421915 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-ACCCGG-TTTAGTAACTCGCA
*
32421955 CAAATGCCTTCGGG-CTTACCCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTACCCGGTTTAGTAACTCGCA
32421991 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32422004 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 2, Indels: 8
0.89 0.02 0.08
Matches are distributed among these distances:
36 20 0.24
37 5 0.06
38 6 0.07
39 3 0.04
40 48 0.56
41 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTACCCGGTTTAGTAACTCGCA
Found at i:32422016 original size:76 final size:80
Alignment explanation
Indices: 32421875--32422055 Score: 221
Period size: 76 Copynumber: 2.3 Consensus size: 80
32421865 GCTACTCGTT
* *
32421875 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
32421940 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
**
32421955 CAAATGCCTTCGGGCTTA-CCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
32422016 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
*
32422032 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
32422056 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
75 3 0.03
76 45 0.51
77 18 0.20
78 6 0.07
79 3 0.03
80 14 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:32430044 original size:77 final size:81
Alignment explanation
Indices: 32429904--32430084 Score: 230
Period size: 77 Copynumber: 2.3 Consensus size: 81
32429894 TACTCGTTCA
* *
32429904 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
32429968 TTTAGTAAC-TCGCAC
66 TATAGTAACTTAGCAC
**
32429983 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
32430044 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
32430061 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
32430085 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
76 3 0.03
77 33 0.37
78 29 0.33
79 24 0.27
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:32430084 original size:40 final size:40
Alignment explanation
Indices: 32429883--32430084 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
32429873 CGGAATTTAA
** *
32429883 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32429923 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32429963 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32430001 CCGGA-ATTAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32430040 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32430080 CCGGA
1 CCGGA
32430085 CATCATTCAA
Statistics
Matches: 140, Mismatches: 13, Indels: 18
0.82 0.08 0.11
Matches are distributed among these distances:
37 10 0.07
38 23 0.16
39 26 0.19
40 70 0.50
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32438022 original size:78 final size:80
Alignment explanation
Indices: 32437855--32438038 Score: 250
Period size: 78 Copynumber: 2.3 Consensus size: 80
32437845 GCTACTCGTT
* *
32437855 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
32437920 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
**
32437935 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
32437997 GATATGGTCACTTAGCA
65 GATATAGTAAC-TAGCA
32438014 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32438039 CATCATTCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 54 0.57
79 12 0.13
80 25 0.27
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCA
Found at i:32438038 original size:40 final size:40
Alignment explanation
Indices: 32437836--32438038 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
32437826 CGGAATTTAA
** *
32437836 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32437876 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32437916 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32437956 CCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32437994 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32438034 CCGGA
1 CCGGA
32438039 CATCATTCAA
Statistics
Matches: 145, Mismatches: 12, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
37 3 0.02
38 29 0.20
39 8 0.06
40 94 0.65
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32446172 original size:40 final size:40
Alignment explanation
Indices: 32446128--32446260 Score: 214
Period size: 40 Copynumber: 3.3 Consensus size: 40
32446118 GCTACTCATT
* * *
32446128 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
32446168 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32446208 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
32446248 CAAATGCCTTCGG
1 CAAATGCCTTCGG
32446261 ATCTTGGTCC
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 85 0.98
41 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:32446297 original size:80 final size:80
Alignment explanation
Indices: 32446128--32446311 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 80
32446118 GCTACTCATT
* *
32446128 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
* *
32446193 ATTTAGTAACTCGCA
66 ATATAGTAACTAGCA
* **
32446208 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTGGTCC
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTT-AACC
* *
32446271 -GGATATGGTCACTTAGCA
63 TGGATATAGTAAC-TAGCA
32446289 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
32446312 ACATCATTCA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
79 3 0.03
80 75 0.83
81 12 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCTGG
ATATAGTAACTAGCA
Found at i:32451558 original size:42 final size:41
Alignment explanation
Indices: 32451475--32451561 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 41
32451465 GACACAACCA
*
32451475 TGTGTCACAAGTCAGAGAGTTACACGGTCTGGCATACGGCCG
1 TGTGTCACAAGTCAGAGAGTTACACAGTCTGGCATA-GGCCG
*
32451517 TGTGTCACAAGTCATAGAGTTACACAGTCTGTGACAT-GGCCG
1 TGTGTCACAAGTCAGAGAGTTACACAGTCTG-G-CATAGGCCG
32451559 TGT
1 TGT
32451562 AACCTAACTC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
42 37 0.90
43 1 0.02
44 3 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
TGTGTCACAAGTCAGAGAGTTACACAGTCTGGCATAGGCCG
Found at i:32453258 original size:54 final size:55
Alignment explanation
Indices: 32453190--32453317 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 55
32453180 TGAGTTGGGC
* * *
32453190 CACACGGCCGTGTCGCAGGCT-GTATGCTAGACCGTGTAACACTCTGAC-TAGTGA
1 CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAAT-A
* * * **
32453244 CACACGACCATGTCGTAGG-TCGTGTGCTAGGTCGTGTAACACACTGACTTAATA
1 CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAATA
*
32453298 CACATGGCCATGTCGCAGGC
1 CACACGGCCATGTCGCAGGC
32453318 CATCTTTGGC
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.02
54 56 0.93
55 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (55 bp):
CACACGGCCATGTCGCAGGCTCGTATGCTAGACCGTGTAACACACTGACTTAATA
Found at i:32454285 original size:37 final size:37
Alignment explanation
Indices: 32454219--32454313 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
32454209 AGTACAAAAG
*
32454219 TAATCCAACCGA-AACACGCCAAAAGCTCATAAGAGC
1 TAATCCAACTGATAACACGCCAAAAGCTCATAAGAGC
* *
32454255 TAATCCAACTGATAACATGCCAAACA-CTCATAATAGC
1 TAATCCAACTGATAACACGCCAAA-AGCTCATAAGAGC
*
32454292 TAATCCCACTGATAACACGCCA
1 TAATCCAACTGATAACACGCCA
32454314 CGACACTAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
36 11 0.21
37 40 0.77
38 1 0.02
ACGTcount: A:0.42, C:0.31, G:0.11, T:0.17
Consensus pattern (37 bp):
TAATCCAACTGATAACACGCCAAAAGCTCATAAGAGC
Found at i:32458974 original size:40 final size:40
Alignment explanation
Indices: 32458862--32459247 Score: 580
Period size: 40 Copynumber: 9.7 Consensus size: 40
32458852 TGAGCATTGG
32458862 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
32458902 AATATATCC-GGCTATGA-CCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
32458940 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
32458980 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
32459020 -ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * **
32459059 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAC
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
32459099 GATATATCCGGGCTAAGACCCGAAGGCAATTAGGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * **
32459139 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAC
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
32459179 GATATATCTGGGCTAAGACCCGAAGGCAATTAGGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
32459219 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
32459248 GTGTGTTTGC
Statistics
Matches: 312, Mismatches: 31, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
38 30 0.10
39 53 0.17
40 229 0.73
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:32459085 original size:119 final size:120
Alignment explanation
Indices: 32458862--32459247 Score: 589
Period size: 119 Copynumber: 3.2 Consensus size: 120
32458852 TGAGCATTGG
32458862 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCC-GGCTATGA-CCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTATGACCCGAAG
32458925 GCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
66 GCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
32458980 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT-ATATATCCGGGCTAAGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTATGACCCGAAG
* * **
32459044 GCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAC
66 GCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
32459099 GATATATCCGGGCTAAGACCCGAAGGCAATTAGGCAAGTTAATATGTCCGGGCTATGACCCGAAG
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTATGACCCGAAG
*** * * *
32459164 GCAATTATGCGAGACGATATATCTGGGCTAAGACCCGAAGGCAATTAGGCAAGTT
66 GCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
32459219 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
32459248 GTGTGTTTGC
Statistics
Matches: 243, Mismatches: 22, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
117 8 0.03
118 47 0.19
119 94 0.39
120 94 0.39
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (120 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATATCCGGGCTATGACCCGAAG
GCAATTATGCGAGTTAATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:32473750 original size:15 final size:17
Alignment explanation
Indices: 32473717--32473755 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
32473707 TAAATTTTGA
32473717 CTTTTTTCACTACTAGC
1 CTTTTTTCACTACTAGC
*
32473734 CTTTTTTCTCT-CT-GC
1 CTTTTTTCACTACTAGC
32473749 CTTTTTT
1 CTTTTTT
32473756 ATTTGTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 2 0.10
17 10 0.48
ACGTcount: A:0.08, C:0.28, G:0.05, T:0.59
Consensus pattern (17 bp):
CTTTTTTCACTACTAGC
Found at i:32480080 original size:17 final size:16
Alignment explanation
Indices: 32480053--32480137 Score: 70
Period size: 16 Copynumber: 5.2 Consensus size: 16
32480043 TGAATGAAGT
*
32480053 GAGTGGAAAAGAAAGA
1 GAGTTGAAAAGAAAGA
32480069 GAGATTGAAAAGAAA-A
1 GAG-TTGAAAAGAAAGA
32480085 TGAG-TGAAAAAGAAAGA
1 -GAGTTG-AAAAGAAAGA
32480102 GAGCTTGAAAAGAAA-A
1 GAG-TTGAAAAGAAAGA
*
32480118 CGAG-TGAAAAAGAGAGA
1 -GAGTTG-AAAAGAAAGA
32480135 GAG
1 GAG
32480138 CGTCAACAAG
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
15 4 0.07
16 26 0.45
17 26 0.45
18 2 0.03
ACGTcount: A:0.56, C:0.02, G:0.32, T:0.09
Consensus pattern (16 bp):
GAGTTGAAAAGAAAGA
Found at i:32480097 original size:16 final size:15
Alignment explanation
Indices: 32480053--32480130 Score: 61
Period size: 17 Copynumber: 4.8 Consensus size: 15
32480043 TGAATGAAGT
*
32480053 GAGTGGAAAAGAAAGA
1 GAGTGAAAAAGAAA-A
32480069 GAGATTG-AAAAGAAAA
1 GAG--TGAAAAAGAAAA
32480085 TGAGTGAAAAAGAAAGA
1 -GAGTGAAAAAGAAA-A
32480102 GAGCTTG-AAAAGAAAA
1 GAG--TGAAAAAGAAAA
32480118 CGAGTGAAAAAGA
1 -GAGTGAAAAAGA
32480131 GAGAGAGCGT
Statistics
Matches: 53, Mismatches: 0, Indels: 18
0.75 0.00 0.25
Matches are distributed among these distances:
15 4 0.08
16 22 0.42
17 23 0.43
18 4 0.08
ACGTcount: A:0.58, C:0.03, G:0.29, T:0.10
Consensus pattern (15 bp):
GAGTGAAAAAGAAAA
Found at i:32480138 original size:33 final size:33
Alignment explanation
Indices: 32480053--32480169 Score: 139
Period size: 33 Copynumber: 3.6 Consensus size: 33
32480043 TGAATGAAGT
* * *
32480053 GAGTGGAAAAGAAAGAGAGATTGAAAAGAAAAT
1 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
32480086 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
1 GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
* * * *
32480119 GAGTGAAAAAGAGAGAGAGCGTCAACAAG-GAAC
1 GAGTGAAAAAGAAAGAGAGCTTGAA-AAGAAAAC
*
32480152 GAGTGAAGAAG-AAGAGAG
1 GAGTGAAAAAGAAAGAGAG
32480170 TGCTCAAACA
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
32 6 0.08
33 65 0.88
34 3 0.04
ACGTcount: A:0.54, C:0.05, G:0.32, T:0.09
Consensus pattern (33 bp):
GAGTGAAAAAGAAAGAGAGCTTGAAAAGAAAAC
Found at i:32483626 original size:69 final size:70
Alignment explanation
Indices: 32483494--32483626 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
32483484 TAGTTTATTA
* * * * * *
32483494 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCCGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
32483559 CTTAG
66 CTTAG
32483564 CTAATTAATATGCCGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCCGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
32483627 GTTATGTACT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 35 0.61
70 22 0.39
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCCGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:32485083 original size:47 final size:47
Alignment explanation
Indices: 32485015--32485271 Score: 401
Period size: 47 Copynumber: 5.5 Consensus size: 47
32485005 TTGAATAAAA
*
32485015 GTGAAAGTG--TATATGTGATAAGACCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32485060 GTGAAAGCGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
32485107 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
32485154 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
32485201 GTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
32485248 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
32485272 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 8 0.04
47 187 0.96
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:32486972 original size:40 final size:40
Alignment explanation
Indices: 32486689--32486957 Score: 412
Period size: 40 Copynumber: 6.7 Consensus size: 40
32486679 GAGAATTGAG
*
32486689 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
32486729 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32486769 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
32486809 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
32486849 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
32486889 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
32486929 GGTGTTATATCCGGGCTAGGTCCCGAAGA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGA
32486958 ACAATCATGC
Statistics
Matches: 210, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 210 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:32489687 original size:69 final size:70
Alignment explanation
Indices: 32489555--32489687 Score: 205
Period size: 69 Copynumber: 1.9 Consensus size: 70
32489545 TAGTTTATTA
* * * * * *
32489555 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGTTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
32489620 CTTAG
66 CTTAG
32489625 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
32489688 GTTATGTACT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
69 34 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:32491327 original size:25 final size:25
Alignment explanation
Indices: 32491298--32491355 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
32491288 CCGAGTGGCC
32491298 AACGTGATGGATGTGAAAGTGTATA
1 AACGTGATGGATGTGAAAGTGTATA
32491323 AACGTGATGGATGTGAAAGTGTATA
1 AACGTGATGGATGTGAAAGTGTATA
*
32491348 AATGTGAT
1 AACGTGAT
32491356 AAGTCCCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.36, C:0.03, G:0.31, T:0.29
Consensus pattern (25 bp):
AACGTGATGGATGTGAAAGTGTATA
Found at i:32491330 original size:47 final size:47
Alignment explanation
Indices: 32491074--32491322 Score: 394
Period size: 47 Copynumber: 5.3 Consensus size: 47
32491064 TATTTGAATA
*
32491074 AATGTGAAAGTG--TATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32491119 AATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32491166 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32491213 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
32491260 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32491307 GATGTGAAAGTGTATA
1 AATGTGAAAGTGTATA
32491323 AACGTGATGG
Statistics
Matches: 189, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 12 0.06
47 177 0.94
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32504757 original size:12 final size:12
Alignment explanation
Indices: 32504740--32504765 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32504730 GATAACATAC
32504740 AATCACTCAGAT
1 AATCACTCAGAT
32504752 AATCACTCAGAT
1 AATCACTCAGAT
32504764 AA
1 AA
32504766 AATCATCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (12 bp):
AATCACTCAGAT
Found at i:32507977 original size:13 final size:13
Alignment explanation
Indices: 32507959--32507987 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
32507949 TCGACACTTG
32507959 TTAGTGTTGGTTC
1 TTAGTGTTGGTTC
32507972 TTAGTGTTGGTTC
1 TTAGTGTTGGTTC
32507985 TTA
1 TTA
32507988 CTTGTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.07, G:0.28, T:0.55
Consensus pattern (13 bp):
TTAGTGTTGGTTC
Found at i:32542239 original size:40 final size:40
Alignment explanation
Indices: 32542180--32542367 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
32542170 GAGCACTGGA
* *
32542180 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
32542220 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
32542260 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
32542300 ATATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
32542340 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
32542368 ATGTGTTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:32551924 original size:12 final size:12
Alignment explanation
Indices: 32551907--32551931 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32551897 TTCTTTTTAT
32551907 ACAAAAAAAAAA
1 ACAAAAAAAAAA
32551919 ACAAAAAAAAAA
1 ACAAAAAAAAAA
32551931 A
1 A
32551932 AGAAAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
ACAAAAAAAAAA
Found at i:32551937 original size:12 final size:13
Alignment explanation
Indices: 32551909--32551939 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32551899 CTTTTTATAC
32551909 AAAAAAAAAAACA
1 AAAAAAAAAAACA
*
32551922 AAAAAAAAAAAGA
1 AAAAAAAAAAACA
32551935 AAAAA
1 AAAAA
32551940 GGAAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.94, C:0.03, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:32562019 original size:50 final size:50
Alignment explanation
Indices: 32561909--32562032 Score: 135
Period size: 50 Copynumber: 2.5 Consensus size: 50
32561899 GGGAATGAGA
* * **
32561909 TCCCATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGTGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGCAGTGGGCACCGTGATGAGAAC
**
32561959 TCCCCCGTAAGACCATGTCTGGGACATGCCA-TGGGCACCGAT-ATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATG-CAGTGGGCACCG-TGATGAGAAC
* **
32562009 TCTCATGTAAGACCAAATCTGGGA
1 TCCCATGTAAGACCATGTCTGGGA
32562033 TATGACATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
50 59 0.97
51 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGCAGTGGGCACCGTGATGAGAAC
Found at i:32563488 original size:139 final size:139
Alignment explanation
Indices: 32563314--32563593 Score: 506
Period size: 139 Copynumber: 2.0 Consensus size: 139
32563304 TTTGTACTGG
32563314 AATGAAATGAGCTGATTTCGTTAATCTGTTAACTATAACCCAGATCGCATCTTTCTTTTTCAGAG
1 AATGAAATGAGCTGATTTCGTTAATCTGTTAACTATAACCCAGATCGCATCTTTCTTTTTCAGAG
*
32563379 ATAGGGGCAATCCTGACACAAAATCAATAGTCACTCTATCCCATTTCCACTCAAGAATCATAATC
66 ATAGGGGCAATCCCGACACAAAATCAATAGTCACTCTATCCCATTTCCACTCAAGAATCATAATC
32563444 GGCTGTAAT
131 GGCTGTAAT
* *
32563453 AATGAAATGAGTTGATTTTGTTAATCTGTTAACTATAACCCAGATCGCATCTTTCTTTTTCAGAG
1 AATGAAATGAGCTGATTTCGTTAATCTGTTAACTATAACCCAGATCGCATCTTTCTTTTTCAGAG
** *
32563518 ATAGGGGCAATCCCGACACAAAATCCTTAGTCATTCTATCCCATTTCCACTCAAGAATCATAATC
66 ATAGGGGCAATCCCGACACAAAATCAATAGTCACTCTATCCCATTTCCACTCAAGAATCATAATC
32563583 GGCTGTAAT
131 GGCTGTAAT
32563592 AA
1 AA
32563594 ACCAGATGGT
Statistics
Matches: 135, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
139 135 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (139 bp):
AATGAAATGAGCTGATTTCGTTAATCTGTTAACTATAACCCAGATCGCATCTTTCTTTTTCAGAG
ATAGGGGCAATCCCGACACAAAATCAATAGTCACTCTATCCCATTTCCACTCAAGAATCATAATC
GGCTGTAAT
Found at i:32568350 original size:22 final size:22
Alignment explanation
Indices: 32568322--32568367 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
32568312 GCTGAGATTG
32568322 TTCATCTTCATGGATCTTAAGT
1 TTCATCTTCATGGATCTTAAGT
32568344 TTCATCTTCATGGATCTTAAGT
1 TTCATCTTCATGGATCTTAAGT
32568366 TT
1 TT
32568368 ACTTCAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (22 bp):
TTCATCTTCATGGATCTTAAGT
Found at i:32570947 original size:20 final size:19
Alignment explanation
Indices: 32570924--32571049 Score: 99
Period size: 20 Copynumber: 6.3 Consensus size: 19
32570914 TACTTCAGAA
*
32570924 CCCCTGAATGCACATTTGTG
1 CCCCTGATTGCAC-TTTGTG
* * * *
32570944 CCCCTGTTTGTACTTCGATA
1 CCCCTGATTGCACTTTG-TG
* * *
32570964 CCCCTAAATGCACATTTGTT
1 CCCCTGATTGCAC-TTTGTG
32570984 CCCCTGATTGCACTTTGGTG
1 CCCCTGATTGCACTTT-GTG
*
32571004 CCCCTGATTGCACATTCGTG
1 CCCCTGATTGCAC-TTTGTG
* *
32571024 CTCTTGATTGCACTTTGATG
1 CCCCTGATTGCACTTTG-TG
32571044 CCCCTG
1 CCCCTG
32571050 TTATGCATCT
Statistics
Matches: 81, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
19 9 0.11
20 67 0.83
21 5 0.06
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (19 bp):
CCCCTGATTGCACTTTGTG
Found at i:32570956 original size:40 final size:40
Alignment explanation
Indices: 32570901--32570998 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
32570891 AAATGAAGAA
*
32570901 GTGCCCCTGTTTGTACTTCAGA-ACCCCTGAATGCACATTT
1 GTGCCCCTGTTTGTACTTC-GATACCCCTAAATGCACATTT
32570941 GTGCCCCTGTTTGTACTTCGATACCCCTAAATGCACATTT
1 GTGCCCCTGTTTGTACTTCGATACCCCTAAATGCACATTT
* * *
32570981 GTTCCCCTGATTGCACTT
1 GTGCCCCTGTTTGTACTT
32570999 TGGTGCCCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.04
40 51 0.96
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (40 bp):
GTGCCCCTGTTTGTACTTCGATACCCCTAAATGCACATTT
Found at i:32571008 original size:40 final size:40
Alignment explanation
Indices: 32570924--32571049 Score: 153
Period size: 40 Copynumber: 3.1 Consensus size: 40
32570914 TACTTCAGAA
* * * *
32570924 CCCCTGAATGCACATTTGTGCCCCTGTTTGTACTTCGATA
1 CCCCTGAATGCACATTTGTGCCCCTGATTGCACTTTGATG
* * *
32570964 CCCCTAAATGCACATTTGTTCCCCTGATTGCACTTTGGTG
1 CCCCTGAATGCACATTTGTGCCCCTGATTGCACTTTGATG
* * * *
32571004 CCCCTGATTGCACATTCGTGCTCTTGATTGCACTTTGATG
1 CCCCTGAATGCACATTTGTGCCCCTGATTGCACTTTGATG
32571044 CCCCTG
1 CCCCTG
32571050 TTATGCATCT
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.35
Consensus pattern (40 bp):
CCCCTGAATGCACATTTGTGCCCCTGATTGCACTTTGATG
Found at i:32575904 original size:13 final size:13
Alignment explanation
Indices: 32575886--32575910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32575876 ACATATTTGA
32575886 GTAAGTAAATATG
1 GTAAGTAAATATG
32575899 GTAAGTAAATAT
1 GTAAGTAAATAT
32575911 ACACAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (13 bp):
GTAAGTAAATATG
Found at i:32576350 original size:50 final size:50
Alignment explanation
Indices: 32576281--32576612 Score: 450
Period size: 50 Copynumber: 6.6 Consensus size: 50
32576271 TGTGAGCCAG
* *
32576281 TGTAAGACCATATCAGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
32576331 TGTAAGACCTTGTCTGGGACATTGCGTTGGCACTGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
32576381 TGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATAAGAAGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* *
32576431 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCACA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
32576481 TGTAAGACCATGTCTAGGACATAGCGTTGGCACCGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * **
32576531 CGTAAGACTATGTCTGGGACATGGC-ATGGACACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGG-CACCGAGATGAGAGGTCCCA
* * *
32576581 TGTAAGACCATATCTGGGATATGGCATTGGCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA
32576613 ATATAGAAAA
Statistics
Matches: 245, Mismatches: 35, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
49 3 0.01
50 239 0.98
51 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
Found at i:32576646 original size:49 final size:48
Alignment explanation
Indices: 32576376--32576651 Score: 150
Period size: 50 Copynumber: 5.6 Consensus size: 48
32576366 AGATGAGAGG
* * * * *
32576376 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGG-CACCGAGAT-AAGAAG
1 TCCCATGTAAGACTATGTCTGGGACATGGC-ATGGACA-C-ATATGAA-AAC
* * * **
32576426 TCCCATGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAGAGG
1 TCCCATGTAAGACTATGTCTGGGACATGGCA-TGGACA-C-ATATGAAAAC
* * * * * * * **
32576476 TCACATGTAAGACCATGTCTAGGACATAGCGTTGG-CACCGAGATGAGAGG
1 TCCCATGTAAGACTATGTCTGGGACATGGC-ATGGACA-C-ATATGAAAAC
** *
32576526 TCCCCCGTAAGACTATGTCTGGGACATGGCATGGACACCGATATGAGAAC
1 TCCCATGTAAGACTATGTCTGGGACATGGCATGGACA-C-ATATGAAAAC
* * *
32576576 TCCCATGTAAGACCATATCTGGGATATGGCATTGG-CA-ATATAGAAAAC
1 TCCCATGTAAGACTATGTCTGGGACATGGCA-TGGACACATAT-GAAAAC
32576624 ATCCCATGTAAGACTATGTCTGGGACAT
1 -TCCCATGTAAGACTATGTCTGGGACAT
32576652 AGCTTTGGAA
Statistics
Matches: 192, Mismatches: 27, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
47 4 0.02
48 5 0.03
49 27 0.14
50 152 0.79
51 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (48 bp):
TCCCATGTAAGACTATGTCTGGGACATGGCATGGACACATATGAAAAC
Found at i:32578370 original size:29 final size:31
Alignment explanation
Indices: 32578324--32578390 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
32578314 TTGCCCAAGA
* * **
32578324 GTAAATAATCAAAATTTGAGGGATTAA-AGT
1 GTAAATAATAAAAATTTGAAGGACCAATAGT
32578354 GTAAATAA-AAAAATTTGAAGGACCAATAGT
1 GTAAATAATAAAAATTTGAAGGACCAATAGT
32578384 GTAAATA
1 GTAAATA
32578391 TTTTAAGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 14 0.44
30 18 0.56
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.27
Consensus pattern (31 bp):
GTAAATAATAAAAATTTGAAGGACCAATAGT
Found at i:32585768 original size:130 final size:130
Alignment explanation
Indices: 32585535--32585790 Score: 379
Period size: 130 Copynumber: 2.0 Consensus size: 130
32585525 AATCATCGAG
* * *
32585535 AATCACTTGACCGGCTAAACCTAAAAAACTTCTAACCTCAAATACATTTCTCGGAGGCTTCTAAT
1 AATCACTTGACCGGCTAAACCCAAAAAACTTCTAACCTCAAATACATTTCTCAGAGGCTTCCAAT
* * * ** *
32585600 CAACAATAGCTGAAATTTTTCTTGGATCAACTCTAATGCCTTCAACTGATACAACATGTCCAATA
66 CAACAACAGCTAAAATATTTCTAAGATCAACTCTAATGCCTTCAACCGATACAACATGTCCAATA
* * *
32585665 AATCACTTGACCGGCTAAACCCAGAAAACTTCTAACCTCTAATACATTTCTCAGATGCTTCCAAT
1 AATCACTTGACCGGCTAAACCCAAAAAACTTCTAACCTCAAATACATTTCTCAGAGGCTTCCAAT
*
32585730 CAACAACAGCTAAAATATTTCTCAAG-TCAACTCTAATGCCTTCGACCGATACAACATGTCC
66 CAACAACAGCTAAAATATTTCT-AAGATCAACTCTAATGCCTTCAACCGATACAACATGTCC
32585791 CAGAAATCTG
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
130 111 0.99
131 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (130 bp):
AATCACTTGACCGGCTAAACCCAAAAAACTTCTAACCTCAAATACATTTCTCAGAGGCTTCCAAT
CAACAACAGCTAAAATATTTCTAAGATCAACTCTAATGCCTTCAACCGATACAACATGTCCAATA
Found at i:32587929 original size:21 final size:20
Alignment explanation
Indices: 32587892--32587934 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
32587882 CGTGAGGGTT
*
32587892 TTTTTAATTTGAATATTATAA
1 TTTTTAAATTGAATATT-TAA
32587913 TTTTTAAATT-AATTATTTAA
1 TTTTTAAATTGAA-TATTTAA
32587933 TT
1 TT
32587935 AGGCTTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTTAAATTGAATATTTAA
Found at i:32589090 original size:18 final size:18
Alignment explanation
Indices: 32589051--32589095 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
32589041 ATTTTTCAAA
*
32589051 AAATAATTTGTTTTTTTC
1 AAATAATTTGTTTTTATC
32589069 AAATAATTTGTTTTGTAT-
1 AAATAATTTGTTTT-TATC
*
32589087 AAATTATTT
1 AAATAATTT
32589096 TATTCCACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (18 bp):
AAATAATTTGTTTTTATC
Found at i:32591124 original size:79 final size:82
Alignment explanation
Indices: 32591013--32591197 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
32591003 GCTACTCGTT
* * *
32591013 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
32591076 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
32591093 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
32591156 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
32591173 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32591198 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:32591197 original size:40 final size:40
Alignment explanation
Indices: 32590994--32591197 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
32590984 CGGAATTTAA
** *
32590994 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
32591034 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32591074 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32591113 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
32591153 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
32591193 CCGGA
1 CCGGA
32591198 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32609461 original size:32 final size:32
Alignment explanation
Indices: 32609394--32609466 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
32609384 CCAGCTATTT
* * *
32609394 TGTTCACACCCAATGAACCGTCCAACTCTTGA
1 TGTTCACACCCAAGGAACCGTCCAACCCATGA
* *
32609426 TGTTCACACCCAAGGTACCGTCGAAGCCCAT-A
1 TGTTCACACCCAAGGAACCGTCCAA-CCCATGA
32609458 TGTTCACAC
1 TGTTCACAC
32609467 TAAGGACTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 32 0.91
33 3 0.09
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.23
Consensus pattern (32 bp):
TGTTCACACCCAAGGAACCGTCCAACCCATGA
Found at i:32613381 original size:27 final size:27
Alignment explanation
Indices: 32613340--32613614 Score: 304
Period size: 27 Copynumber: 10.2 Consensus size: 27
32613330 ACTTAATGGC
*
32613340 TAAAATTATCAAAATACCCTCGAAGGG
1 TAAAATTACCAAAATACCCTCGAAGGG
* * *
32613367 TAAAATTACCGAAATACACTCGAAAGG
1 TAAAATTACCAAAATACCCTCGAAGGG
* *
32613394 TAAATTTACCGAAATACCC-CTGAAGGG
1 TAAAATTACCAAAATACCCTC-GAAGGG
*
32613421 TAAAATTATCAAAATACCCTCGAAGGG
1 TAAAATTACCAAAATACCCTCGAAGGG
* * *
32613448 TAAAATTATCAAAATACCTTCAAAGGG
1 TAAAATTACCAAAATACCCTCGAAGGG
** *
32613475 TAAAATTACTGAAATACCCTC-AAAGG
1 TAAAATTACCAAAATACCCTCGAAGGG
* *
32613501 TAAAATTATCGAAATA-CCTCTGAAGGG
1 TAAAATTACCAAAATACCCTC-GAAGGG
32613528 TAAAATTACCAAAATACCCTCGAAGGG
1 TAAAATTACCAAAATACCCTCGAAGGG
** * *
32613555 TAAAATTACTGAAATACCCTCAAAGTG
1 TAAAATTACCAAAATACCCTCGAAGGG
** * *
32613582 TAAAATTATAAAAATACCCCCGAATGG
1 TAAAATTACCAAAATACCCTCGAAGGG
32613609 TAAAAT
1 TAAAAT
32613615 AACTGTTATA
Statistics
Matches: 210, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
25 4 0.02
26 19 0.09
27 182 0.87
28 5 0.02
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGAAGGG
Found at i:32613597 original size:107 final size:107
Alignment explanation
Indices: 32613340--32613614 Score: 383
Period size: 107 Copynumber: 2.6 Consensus size: 107
32613330 ACTTAATGGC
* * * *
32613340 TAAAATTATCAAAATACCCTCGAAGGGTAAAATTACCGAAATACACTCGAAAGGTAAATTTACCG
1 TAAAATTATCAAAATACCCTCAAAGGGTAAAATTA-TGAAATACCCTCGAAAGGTAAAATTACCG
*
32613405 AAATACCCCTGAAGGGTAAAATTATCAAAATACCCTCGAAGGG
65 AAATACCCCTGAAGGGTAAAATTACCAAAATACCCTCGAAGGG
* *
32613448 TAAAATTATCAAAATACCTTCAAAGGGTAAAATTACTGAAATACCCTC-AAAGGTAAAATTATCG
1 TAAAATTATCAAAATACCCTCAAAGGGTAAAATTA-TGAAATACCCTCGAAAGGTAAAATTACCG
*
32613512 AAATACCTCTGAAGGGTAAAATTACCAAAATACCCTCGAAGGG
65 AAATACCCCTGAAGGGTAAAATTACCAAAATACCCTCGAAGGG
* * * * *
32613555 TAAAATTA-CTGAAATACCCTCAAAGTGTAAAATTATAAAAATACCCCCGAATGGTAAAAT
1 TAAAATTATC-AAAATACCCTCAAAGGGTAAAATTAT-GAAATACCCTCGAAAGGTAAAAT
32613615 AACTGTTATA
Statistics
Matches: 150, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
106 2 0.01
107 94 0.63
108 54 0.36
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (107 bp):
TAAAATTATCAAAATACCCTCAAAGGGTAAAATTATGAAATACCCTCGAAAGGTAAAATTACCGA
AATACCCCTGAAGGGTAAAATTACCAAAATACCCTCGAAGGG
Found at i:32613627 original size:81 final size:80
Alignment explanation
Indices: 32613340--32613614 Score: 379
Period size: 81 Copynumber: 3.4 Consensus size: 80
32613330 ACTTAATGGC
* * * * * *
32613340 TAAAATTATCAAAATACCCTCGAAGGGTAAAATTACCGAAATACACTCGAAAGGTAAATTTACCG
1 TAAAATTATCAAAATACCCCCGAAGGGTAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTG
* *
32613405 AAATACCCCTGAAGGG
66 AAATA-CCCTCAAAGG
* * * *
32613421 TAAAATTATCAAAATACCCTCGAAGGGTAAAATTATCAAAATACCTTCAAAGGGTAAAATTACTG
1 TAAAATTATCAAAATACCCCCGAAGGGTAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTG
32613486 AAATACCCTCAAAGG
66 AAATACCCTCAAAGG
* * *
32613501 TAAAATTATCGAAATACCTCTGAAGGGTAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTG
1 TAAAATTATCAAAATACCCCCGAAGGGTAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTG
32613566 AAATACCCTCAAAGTG
66 AAATACCCTCAAAG-G
* *
32613582 TAAAATTATAAAAATACCCCCGAATGGTAAAAT
1 TAAAATTATCAAAATACCCCCGAAGGGTAAAAT
32613615 AACTGTTATA
Statistics
Matches: 171, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 80 0.47
81 91 0.53
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (80 bp):
TAAAATTATCAAAATACCCCCGAAGGGTAAAATTACCAAAATACCCTCGAAGGGTAAAATTACTG
AAATACCCTCAAAGG
Found at i:32616200 original size:50 final size:50
Alignment explanation
Indices: 32616130--32616323 Score: 185
Period size: 50 Copynumber: 3.9 Consensus size: 50
32616120 ATTAGAGGTT
* * **
32616130 ATGAGAGGTCCCATGTAAGACCATGTCTGGGGTATGGCGTTGGCATTGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGAG
* * * *
32616180 ATGAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGAG
** * * *
32616230 ATGAGAACTCCCATGTAAGACCATATCTGGAATATGGCATTGGCA--GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCG-AG
* * ** * * *
32616279 AGGAAACATCCCATGTAAGATCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCA
32616324 TGTTATTATC
Statistics
Matches: 118, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 37 0.31
50 80 0.68
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGGCACCGAG
Found at i:32616266 original size:100 final size:99
Alignment explanation
Indices: 32616129--32616316 Score: 241
Period size: 100 Copynumber: 1.9 Consensus size: 99
32616119 CATTAGAGGT
** * ** * * * * * ** *
32616129 TATGAGAGGTCCCATGTAAGACCATGTCTGGGGTATGGCGTTGGCATTGAGATGAGAGGTCCCCT
1 TATGAGAACTCCCATGTAAGACCATATCTGGAATATGGCATTGGCAGT-ACAGGAAACATCCCAT
32616194 GTAAGACCATGTCTGGGACATGGCATGGGCACCGA
65 GTAAGACCATGTCTGGGACATGGCATGGGCACCGA
32616229 TATGAGAACTCCCATGTAAGACCATATCTGGAATATGGCATTGGCAGTACAGGAAACATCCCATG
1 TATGAGAACTCCCATGTAAGACCATATCTGGAATATGGCATTGGCAGTACAGGAAACATCCCATG
*
32616294 TAAGATCATGTCTGGGACATGGC
66 TAAGACCATGTCTGGGACATGGC
32616317 TTTGGCATGT
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 33 0.45
100 41 0.55
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (99 bp):
TATGAGAACTCCCATGTAAGACCATATCTGGAATATGGCATTGGCAGTACAGGAAACATCCCATG
TAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:32616542 original size:12 final size:12
Alignment explanation
Indices: 32616525--32616563 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32616515 ATGATTTATT
32616525 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
32616537 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
32616549 TAAGAAAGTAAG
1 TAAGTAAGCAAG
32616561 TAA
1 TAA
32616564 AGAAGAAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:32618485 original size:52 final size:52
Alignment explanation
Indices: 32618356--32618486 Score: 178
Period size: 50 Copynumber: 2.6 Consensus size: 52
32618346 ATGTGTTTTG
* *
32618356 CATTTAATAAAGTCATGCATTATGTAAC-TCTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTTCTCATGTTAGTTAAGTTTGCAT
* * *
32618407 CA-TAAATTATGACATGCATTCTGTAACTTC-CATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTTCTCATGTTAGTT-AAGTTTGCAT
*
32618458 CATTAAATTAAGTCATGCATTAAGTAACT
1 CATTAAATTAAGTCATGCATTATGTAACT
32618487 CATTTATTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
50 30 0.44
51 16 0.24
52 22 0.32
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (52 bp):
CATTAAATTAAGTCATGCATTATGTAACTTCTCATGTTAGTTAAGTTTGCAT
Found at i:32618890 original size:24 final size:25
Alignment explanation
Indices: 32618857--32618904 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
32618847 AGATTAATAA
** *
32618857 AATAGAAGAATGAAAATATAGAATT
1 AATAGAAGAAAAAAAATAAAGAATT
32618882 AATA-AAGAAAAAAAATAAAGAAT
1 AATAGAAGAAAAAAAATAAAGAAT
32618905 ATAGATGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.12, T:0.19
Consensus pattern (25 bp):
AATAGAAGAAAAAAAATAAAGAATT
Found at i:32620542 original size:33 final size:33
Alignment explanation
Indices: 32620496--32620764 Score: 198
Period size: 33 Copynumber: 8.3 Consensus size: 33
32620486 CAAATGTATG
*
32620496 TATATACTCATCAAATACTTATAACCGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* *
32620529 TATATACTTATCAACTACTTATAACTGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* * * * *
32620562 TATACAC--ATGAAAT-GTATACAACTGAATGCA
1 TATATACTTATCAAATACT-TATAACCGAATGCA
* * *
32620593 TATATACCTATCAAATACTTATAATCGAACGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* * *
32620626 TATACAC--ATCAAAT-GTATACAACCGAATGCA
1 TATATACTTATCAAATACT-TATAACCGAATGCA
* *
32620657 TATATACCTATCAAATACTTATAATCGAATGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
* * *
32620690 CATACACATTA--AAGGTA--TATAACCGAATGCATA
1 TATATAC-TTATCAA-ATACTTATAACCGAATGC--A
* * * *
32620723 TATATACCTATCAAATACTTATAATCAAAAGCA
1 TATATACTTATCAAATACTTATAACCGAATGCA
*
32620756 TATACACTT
1 TATATACTT
32620765 CAAAGGTATA
Statistics
Matches: 182, Mismatches: 38, Indels: 32
0.72 0.15 0.13
Matches are distributed among these distances:
30 2 0.01
31 60 0.33
32 4 0.02
33 100 0.55
34 6 0.03
35 10 0.05
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.30
Consensus pattern (33 bp):
TATATACTTATCAAATACTTATAACCGAATGCA
Found at i:32620586 original size:31 final size:31
Alignment explanation
Indices: 32620551--32620724 Score: 122
Period size: 31 Copynumber: 5.5 Consensus size: 31
32620541 AACTACTTAT
*
32620551 AACTGAATGCATATACACATGAAATGTATAC
1 AACTGAATGCATATACACATCAAATGTATAC
* * *
32620582 AACTGAATGCATATATACCTATCAAATACT-TAT
1 AACTGAATGCATATACA-C-ATCAAAT-GTATAC
*
32620615 AA-TCGAACGCATATACACATCAAATGTATAC
1 AACT-GAATGCATATACACATCAAATGTATAC
* * * *
32620646 AACCGAATGCATATATACCTATCAAATACT-TAT
1 AACTGAATGCATATACA-C-ATCAAAT-GTATAC
* * * *
32620679 AA-TCGAATGCACATACACATTAAAGGTATAT
1 AACT-GAATGCATATACACATCAAATGTATAC
*
32620710 AACCGAATGCATATA
1 AACTGAATGCATATA
32620725 TATACCTATC
Statistics
Matches: 110, Mismatches: 21, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
30 2 0.02
31 58 0.53
32 5 0.05
33 43 0.39
34 2 0.02
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (31 bp):
AACTGAATGCATATACACATCAAATGTATAC
Found at i:32620594 original size:64 final size:64
Alignment explanation
Indices: 32620518--32620805 Score: 371
Period size: 64 Copynumber: 4.4 Consensus size: 64
32620508 AAATACTTAT
* * *
32620518 AACCGAATGCATATATACTTATCAACTACTTATAA-CTGAATGCATATACACATGAAATGTATAC
1 AACCGAATGCATATATACCTATCAAATACTTATAATC-GAATGCATATACACATCAAATGTATAC
* *
32620582 AACTGAATGCATATATACCTATCAAATACTTATAATCGAACGCATATACACATCAAATGTATAC
1 AACCGAATGCATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAATGTATAC
* * * *
32620646 AACCGAATGCATATATACCTATCAAATACTTATAATCGAATGCACATACACATTAAAGGTATAT
1 AACCGAATGCATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAATGTATAC
* * * *
32620710 AACCGAATGCATATATATACCTATCAAATACTTATAATCAAAAGCATATACACTTCAAAGGTATA
1 AACCGAATGC--ATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAATGTATA
*
32620775 T
64 C
* * *
32620776 AACCAAATACATATAAATACATATCAAATA
1 AACCGAATGCATAT--ATACCTATCAAATA
32620806 AGATATAAAT
Statistics
Matches: 200, Mismatches: 19, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
64 129 0.64
65 1 0.00
66 70 0.35
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (64 bp):
AACCGAATGCATATATACCTATCAAATACTTATAATCGAATGCATATACACATCAAATGTATAC
Found at i:32621229 original size:76 final size:77
Alignment explanation
Indices: 32621134--32621321 Score: 225
Period size: 76 Copynumber: 2.4 Consensus size: 77
32621124 TTCGAATCTT
* * * * * *
32621134 ATAAATATTTACAATTCATACTTTTAATTCAATTCAAGTACTTGTATACGTATATACATCT-ATT
1 ATAAATATTTAAAATTCATACCTTTAATTCAATTCAAGAACTTATACACGTATATACATATAATT
*
32621198 CGAATCAAACAC
66 CGAACCAAACAC
* * *
32621210 ATAAATATTTAAAAGTCATACCTTTAATTTAATTCAAGAACTTATACATGTATATACATATACAT
1 ATAAATATTTAAAATTCATACCTTTAATTCAATTCAAGAACTTATACACGTATATACATATA-AT
** *
32621275 TCGAACCTCACAT
65 TCGAACCAAACAC
* *
32621288 ATACATATATAAAATTCATACCTTTAATTCAATT
1 ATAAATATTTAAAATTCATACCTTTAATTCAATT
32621322 TATATACTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
76 52 0.56
78 41 0.44
ACGTcount: A:0.41, C:0.16, G:0.04, T:0.38
Consensus pattern (77 bp):
ATAAATATTTAAAATTCATACCTTTAATTCAATTCAAGAACTTATACACGTATATACATATAATT
CGAACCAAACAC
Found at i:32625263 original size:7 final size:7
Alignment explanation
Indices: 32625253--32625279 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32625243 GCATAGTAGA
32625253 TAGGGTT
1 TAGGGTT
32625260 TAGGGTT
1 TAGGGTT
32625267 TAGGGTT
1 TAGGGTT
32625274 TAGGGT
1 TAGGGT
32625280 GAAACACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (7 bp):
TAGGGTT
Found at i:32627777 original size:21 final size:21
Alignment explanation
Indices: 32627751--32627791 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32627741 TTCTTCAGTA
*
32627751 TTGCTGCTTGGCTTTGGATCG
1 TTGCTGCTTGACTTTGGATCG
32627772 TTGCTGCTTGACTTTGGATC
1 TTGCTGCTTGACTTTGGATC
32627792 AAGGCATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.29, T:0.44
Consensus pattern (21 bp):
TTGCTGCTTGACTTTGGATCG
Found at i:32630736 original size:14 final size:14
Alignment explanation
Indices: 32630717--32630744 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32630707 TAAAGTTATA
32630717 TTTAATAATTCATT
1 TTTAATAATTCATT
32630731 TTTAATAATTCATT
1 TTTAATAATTCATT
32630745 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:32639877 original size:27 final size:26
Alignment explanation
Indices: 32639834--32639890 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
32639824 CAAATTTAAA
**
32639834 AAAAGCAAAAAGAAAAAATTAAAATC
1 AAAAGCAAAAAGAAAAAAGAAAAATC
32639860 AAAA-CAAAAAGAAGAAAAAGAAAAATC
1 AAAAGCAAAAAG-A-AAAAAGAAAAATC
32639887 AAAA
1 AAAA
32639891 TCAAGGTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 7 0.26
26 5 0.19
27 15 0.56
ACGTcount: A:0.77, C:0.07, G:0.09, T:0.07
Consensus pattern (26 bp):
AAAAGCAAAAAGAAAAAAGAAAAATC
Found at i:32639902 original size:34 final size:34
Alignment explanation
Indices: 32639831--32639894 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
32639821 GATCAAATTT
*
32639831 AAAAAAAGCAAAAAGAAAAAATTAAAATCAAAAC
1 AAAAAAAGCAAAAAGAAAAAATCAAAATCAAAAC
32639865 AAAAAGAAG-AAAAAG-AAAAATCAAAATCAA
1 AAAAA-AAGCAAAAAGAAAAAATCAAAATCAA
32639895 GGTCAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 14 0.50
34 11 0.39
35 3 0.11
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (34 bp):
AAAAAAAGCAAAAAGAAAAAATCAAAATCAAAAC
Found at i:32640837 original size:6 final size:7
Alignment explanation
Indices: 32640805--32640842 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
32640795 CAAAAAAATG
32640805 TGAAAAA
1 TGAAAAA
32640812 TGAAAAA
1 TGAAAAA
32640819 -GAGAAAA
1 TGA-AAAA
32640826 TGAAAAA
1 TGAAAAA
*
32640833 TAAAAAA
1 TGAAAAA
32640840 TGA
1 TGA
32640843 TGGAGAGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.07
7 23 0.85
8 2 0.07
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (7 bp):
TGAAAAA
Found at i:32642654 original size:100 final size:100
Alignment explanation
Indices: 32642428--32643399 Score: 1465
Period size: 100 Copynumber: 9.8 Consensus size: 100
32642418 GAAGACGGCA
* * * * * * * * *
32642428 AATCTCACTTCCCTGGCGATACAGTGGAACATATTAAAGCCACATTGGTGAATCATCCTTCCTCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
**
32642493 ACATTGCAAAT-AAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
*
32642527 AATCTTACTCCCCAGGCGATGCGGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
32642592 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* *
32642627 AATATTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGC-TCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * *
32642691 AAATTACAGTTAAAAAGATTAAAGCTACAACAGTG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* * *
32642726 AATCTTATTCCCCAGGCGATGCGGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
*
32642791 ACATTGCAATTAAAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* * *
32642826 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCATATTGGTGAATCTTGC-TCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
*
32642890 ACATTGCAGTTAAAAAGATTAAAGCTACAACAACG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* * *
32642925 AATCTTACTCCCCAGGCGATGCGGTGCAACAGATTAAAGCTACATCGGTGAATCTTGCTTCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
*
32642990 GCATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
*
32643025 AATCTTACTCCCTAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGC-TCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
*
32643089 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGTG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* * *
32643124 AATCTTATTCCCCAGGTGATGCGGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* *
32643189 ACATTGCAGTTAAAAAAATTAAAGCTACAACAGTG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* *
32643224 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCAGTGAATCTTGC-T-CCCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
*
32643287 ACATTGCAGTTAAAAAGATTAAAGCTACAACGGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
* * * * *
32643322 AATCTTACTTCCCAGACGGTGCAGTCGAACAGATTGAAA-CCACAAT-GGTGAATCTTGCTTCCT
1 AATCTTACTCCCCAGGCGATGCAGTGGAACAGATT-AAAGCCAC-ATCGGTGAATCTTGCTTCCC
*
32643385 CGACATTACAGTTAA
64 CGACATTGCAGTTAA
32643400 GCTTATTAAA
Statistics
Matches: 799, Mismatches: 66, Indels: 15
0.91 0.08 0.02
Matches are distributed among these distances:
98 81 0.10
99 348 0.44
100 370 0.46
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (100 bp):
AATCTTACTCCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
Found at i:32642789 original size:199 final size:199
Alignment explanation
Indices: 32642428--32643399 Score: 1531
Period size: 199 Copynumber: 4.9 Consensus size: 199
32642418 GAAGACGGCA
* * * * * * * *
32642428 AATCTCACTTCCCTGGCGATACAGTGGAACATATTAAAGCCACATTGGTGAATCATCCTTCCTCG
1 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGC-TCCCCG
** *
32642493 ACATTGCAAAT-AAAAGATTAAAGCTACAACAGCGAATCTTACTCCCCAGGCGATGCGGTGGAAC
65 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTCCCCAGGCGATGCGGTGGAAC
32642557 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
130 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAA
32642622 CAGCG
195 CAGCG
*
32642627 AATATTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
1 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
* * *
32642692 AATTACAGTTAAAAAGATTAAAGCTACAACAGTGAATCTTATTCCCCAGGCGATGCGGTGGAACA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTCCCCAGGCGATGCGGTGGAACA
* *
32642757 TATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTAAAGCTACAAC
131 GATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAAC
32642822 AGCG
196 AGCG
* *
32642826 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCATATTGGTGAATCTTGCTCCCCGA
1 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
* * *
32642891 CATTGCAGTTAAAAAGATTAAAGCTACAACAACGAATCTTACTCCCCAGGCGATGCGGTGCAACA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTCCCCAGGCGATGCGGTGGAACA
* *
32642956 GATTAAAGCTACATCGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAGATTAAAGCTACAAC
131 GATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAAC
32643021 AGCG
196 AGCG
* *
32643025 AATCTTACTCCCTAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
1 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
* *
32643090 CATTGCAGTTAAAAAGATTAAAGCTACAACAGTGAATCTTATTCCCCAGGTGATGCGGTGGAACA
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTCCCCAGGCGATGCGGTGGAACA
*
32643155 GATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAAATTAAAGCTACAAC
131 GATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAAC
*
32643220 AGTG
196 AGCG
*
32643224 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCAGTGAATCTTGCT-CCCGA
1 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
* * * * *
32643288 CATTGCAGTTAAAAAGATTAAAGCTACAACGGCGAATCTTACTT-CCCAGACGGTGCAGTCGAAC
66 CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTA-TTCCCCAGGCGATGCGGTGGAAC
* *
32643352 AGATTGAAA-CCACAAT-GGTGAATCTTGCTTCCTCGACATTACAGTTAA
130 AGATT-AAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAA
32643400 GCTTATTAAA
Statistics
Matches: 714, Mismatches: 55, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
198 110 0.15
199 604 0.85
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (199 bp):
AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCACATCGGTGAATCTTGCTCCCCGA
CATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTATTCCCCAGGCGATGCGGTGGAACA
GATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAAC
AGCG
Found at i:32643375 original size:50 final size:50
Alignment explanation
Indices: 32642428--32643383 Score: 386
Period size: 50 Copynumber: 19.2 Consensus size: 50
32642418 GAAGACGGCA
* * * * * * *
32642428 AATCTCACTTCCCTGGCGATACAGTGGAACATATTAAAGCCACATTGGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * * * ** *
32642478 AATCATCCTTCCTC-GAC-ATTGCAAAT--AAAAGATTAAAGCTACAACAGCG
1 AATCTTACTTCC-CAGACGA-TGC-AGTCGAACAGATTAAAGCCACAATGGTG
* * * *
32642527 AATCTTACTCCCCAGGCGATGCGGTGGAACAGATTAAAGCCAC-ATCGGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* * ** * * ** *
32642577 AATCTTGCTTCCCCGAC-ATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * * *
32642627 AATATTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCAC-ATCGGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* * * * ** * * **
32642677 AATCTTGC-TCCCCGA-AATTACAGTTAAAAAGATTAAAGCTACAACAGTG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * *
32642726 AATCTTA-TTCCCCAGGCGATGCGGTGGAACATATTAAAGCCAC-ATCGGTG
1 AATCTTACTT-CCCAGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* * * ** * * ** *
32642776 AATCTTGCTTCCCCGAC-ATTGCAATTAAAAAGATTAAAGCTACAACAGCG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * * * *
32642826 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCATATTGGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAATGGTG
* * ** * * ****
32642876 AATCTTGC-TCCCCGAC-ATTGCAGTTAAAAAGATTAAAGCTACAACAACG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * *
32642925 AATCTTACTCCCCAGGCGATGCGGT-GCAACAGATTAAAGCTAC-ATCGGTG
1 AATCTTACTTCCCAGACGATGCAGTCG-AACAGATTAAAGCCACAAT-GGTG
* * * ** * * ** *
32642975 AATCTTGCTTCCCCGGC-ATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* *
32643025 AATCTTAC-TCCCTAGGCGATGCAGTGGAACAGATTAAAGCCAC-ATCGGTG
1 AATCTTACTTCCC-AGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* * ** * * **
32643075 AATCTTGC-TCCCCGAC-ATTGCAGTTAAAAAGATTAAAGCTACAACAGTG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
** * *
32643124 AATCTTA-TTCCCCAGGTGATGCGGTGGAACAGATTAAAGCCAC-ATCGGTG
1 AATCTTACTT-CCCAGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* * ** * * * **
32643174 AATCTTGCTTCCCCGAC-ATTGCAGTTAAAAAAATTAAAGCTACAACAGTG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
* * * * *
32643224 AATCTTACTCCCCAGGCGATGCAGTGGAACATATTAAAGCCAC-ATCAGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAAT-GGTG
* ** * * * *
32643274 AATCTTGC-TCCC-GAC-ATTGCAGTTAAAAAGATTAAAGCTACAACGGCG
1 AATCTTACTTCCCAGACGA-TGCAGTCGAACAGATTAAAGCCACAATGGTG
*
32643322 AATCTTACTTCCCAGACGGTGCAGTCGAACAGATTGAAA-CCACAATGGTG
1 AATCTTACTTCCCAGACGATGCAGTCGAACAGATT-AAAGCCACAATGGTG
*
32643372 AATCTTGCTTCC
1 AATCTTACTTCC
32643384 TCGACATTAC
Statistics
Matches: 646, Mismatches: 210, Indels: 100
0.68 0.22 0.10
Matches are distributed among these distances:
47 1 0.00
48 35 0.05
49 150 0.23
50 439 0.68
51 21 0.03
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (50 bp):
AATCTTACTTCCCAGACGATGCAGTCGAACAGATTAAAGCCACAATGGTG
Found at i:32646468 original size:40 final size:40
Alignment explanation
Indices: 32646438--32646645 Score: 238
Period size: 40 Copynumber: 5.2 Consensus size: 40
32646428 GGACTAAGAT
* *
32646438 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
32646478 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
32646518 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
32646558 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * * *
32646598 CCGAAGGCATT-GTGTGAGTTACTAAAACTGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
32646637 CCGAAGGCA
1 CCGAAGGCA
32646646 CTTGAACGAG
Statistics
Matches: 154, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 30 0.19
40 124 0.81
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:32646522 original size:80 final size:80
Alignment explanation
Indices: 32646385--32646645 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
32646375 TTGAATGCTG
* * * * * **
32646385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
32646448 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
32646465 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
** *
32646530 GTGCGAGTTGTTGAA
66 GTGCGAGTTACTAAA
* * * * *
32646545 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
32646609 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* * *
32646624 ACTGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
32646646 CTTGAACGAG
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 31 0.21
80 114 0.75
81 6 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:32654396 original size:40 final size:40
Alignment explanation
Indices: 32654366--32654573 Score: 247
Period size: 40 Copynumber: 5.2 Consensus size: 40
32654356 GGACTAAGAT
* *
32654366 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
32654406 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
32654446 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
32654486 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
32654526 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
32654565 CCGAAGGCA
1 CCGAAGGCA
32654574 CTTGAACGAG
Statistics
Matches: 155, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 31 0.20
40 124 0.80
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:32654450 original size:80 final size:80
Alignment explanation
Indices: 32654313--32654573 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
32654303 TTGAATGCTG
* * * * * **
32654313 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
32654376 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
32654393 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
** *
32654458 GTGCGAGTTGTTGAA
66 GTGCGAGTTACTAAA
* * * * *
32654473 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
32654537 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
32654552 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCA
32654574 CTTGAACGAG
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
79 32 0.21
80 114 0.75
81 6 0.04
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:32654595 original size:79 final size:80
Alignment explanation
Indices: 32654366--32654610 Score: 203
Period size: 80 Copynumber: 3.1 Consensus size: 80
32654356 GGACTAAGAT
* * * * * ** * *
32654366 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
*
32654430 AAATCCGGGTTAAGTC
65 GAATCCGGGTTAAGTC
** * * * ** ** *
32654446 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTG
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTG
*
32654511 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* *
32654526 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCACTT-GAACGAGGAGCT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA-TTCGAACGAGGAGCT
* *
32654589 -ATATCC-GGTTAAATT
65 GA-ATCCGGGTTAAGTC
32654604 CCGAAGG
1 CCGAAGG
32654611 TACGTGATTT
Statistics
Matches: 138, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
78 14 0.10
79 42 0.30
80 82 0.59
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTG
AATCCGGGTTAAGTC
Found at i:32661065 original size:41 final size:41
Alignment explanation
Indices: 32661020--32661121 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
32661010 GCTTAGAGCT
*
32661020 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACAAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
* * * * *
32661061 TAGCAGGCTTAATGCCGGTGAAATATTTTAGACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
32661102 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
32661122 TACTGAATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.06
41 51 0.94
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAGACAAAATGTC
Found at i:32666779 original size:28 final size:28
Alignment explanation
Indices: 32666743--32666916 Score: 260
Period size: 28 Copynumber: 6.2 Consensus size: 28
32666733 CAGTGATAGT
*
32666743 ACAGTGTGGGCTTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
32666771 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* *
32666799 ACAGTGTGGGCCTTGGCCCAATACAATA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* * *
32666827 ATAGTGTGGGCCTCAGCCTAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
32666855 ACAGTGTGGGCCTTAGCCCAATACAG-A
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* *
32666882 ATCAATGTAGGCCTTAGCCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
32666911 ACAGTG
1 ACAGTG
32666917 CAGTGCAATA
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
27 2 0.02
28 126 0.97
29 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:32667053 original size:26 final size:26
Alignment explanation
Indices: 32667024--32667084 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
32667014 TGAATATTGC
*
32667024 AGCAAAGCTACCAGTAATAGCATCGT
1 AGCAAAGCTACCAATAATAGCATCGT
* * * *
32667050 AGCAGAGCTTCCAATATTAGTATCGT
1 AGCAAAGCTACCAATAATAGCATCGT
32667076 AGCAAAGCT
1 AGCAAAGCT
32667085 GCTAGTAACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (26 bp):
AGCAAAGCTACCAATAATAGCATCGT
Found at i:32667904 original size:27 final size:26
Alignment explanation
Indices: 32667332--32667894 Score: 586
Period size: 27 Copynumber: 20.9 Consensus size: 26
32667322 GGTTATAACA
32667332 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * *
32667359 ATCATTTTATCCTATAGGGTTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
32667386 GTCATTTTACCCTATAGAGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
32667413 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
** * *
32667440 GTCATTTTACTTTATAGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTCG
32667466 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
32667493 GTCATTTTACCCTATGGGGTTATTTCA
1 GTCATTTTACCCTATGGGG-TATTTCG
* *
32667520 ATCATTTTACTCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
* * *
32667547 ATCATTTTACCCTATAGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTCG
* **
32667573 GTCATCTTACTTTATGGGGTTATTTCG
1 GTCATTTTACCCTATGGGG-TATTTCG
* * *
32667600 GTCATCTTACCTTATGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
** *
32667627 GTCATTTTATGCTATAGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
32667654 GTCATTTTACCCTATGGGTGTATTTCA
1 GTCATTTTACCCTATGGG-GTATTTCG
* *
32667681 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * **
32667708 GCCATTTTACCTTATGAGGGTATTTTA
1 GTCATTTTACCCTATG-GGGTATTTCG
*
32667735 GCCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
32667762 GTCATTTTACCTTATGAGGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCG
* *
32667789 GCCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * *
32667816 ATCATTTTACCCTATGGGATTATTTCA
1 GTCATTTTACCCTATGGG-GTATTTCG
* *
32667843 GTCATGTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
32667870 GTCATTTTACCCTATGGAGGTATTT
1 GTCATTTTACCCTATGG-GGTATTT
32667895 TAGTCGTTTT
Statistics
Matches: 450, Mismatches: 71, Indels: 30
0.82 0.13 0.05
Matches are distributed among these distances:
26 60 0.13
27 375 0.83
28 15 0.03
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:32667953 original size:27 final size:27
Alignment explanation
Indices: 32667331--32667962 Score: 491
Period size: 27 Copynumber: 23.4 Consensus size: 27
32667321 GGGTTATAAC
*
32667331 AGTCATTTTACCCTATGGGGGTA-TTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* * * *
32667357 CGATCATTTTATCCTATAGGGTTATTTC
1 AG-TCATTTTACCCTATAGGGGTATTTT
* *
32667385 GGTCATTTTACCCTATAGAGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* *
32667412 GGTCATTTTACCCTAT-GAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGTATTTT
* **
32667439 GGTCATTTTACTTTATA-GGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* * *
32667465 GGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTT
* *
32667492 GGTCATTTTACCCTAT-GGGGTTATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTT
* *
32667519 AATCATTTTACTCTAT-GAGGGTA-TTT
1 AGTCATTTTACCCTATAG-GGGTATTTT
*
32667545 CGATCATTTTACCCTATA-GGGTATTTT
1 AG-TCATTTTACCCTATAGGGGTATTTT
* * ** *
32667572 GGTCATCTTACTTTAT-GGGGTTATTTC
1 AGTCATTTTACCCTATAGGGG-TATTTT
* * * * *
32667599 GGTCATCTTACCTTATGGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTT
**
32667626 AGTCATTTTATGCTATAGGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* *
32667653 GGTCATTTTACCCTAT-GGGTGTATTTC
1 AGTCATTTTACCCTATAGGG-GTATTTT
* *
32667680 AATCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* * *
32667707 GGCCATTTTACCTTAT-GAGGGTATTTT
1 AGTCATTTTACCCTATAG-GGGTATTTT
* * *
32667734 AGCCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTT
* * *
32667761 GGTCATTTTACCTTAT-GAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGTATTTT
* *
32667788 AGCCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
* *
32667815 -GATCATTTTACCCTAT-GGGATTATTTC
1 AG-TCATTTTACCCTATAGGG-GTATTTT
* * *
32667842 AGTCATGTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTT
32667869 AGTCATTTTACCCTAT-GGAGGTATTTT
1 AGTCATTTTACCCTATAGG-GGTATTTT
* * * * * ***
32667896 AGTCGTTTTCATCTTTTAGGGCTAAAAT
1 AGTCATTTT-ACCCTATAGGGGTATTTT
* *
32667924 AGTTATTTTACCCTTTAGGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTT
32667951 AGTCATTTTACC
1 AGTCATTTTACC
32667963 TATTTTAGGG
Statistics
Matches: 496, Mismatches: 84, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
26 60 0.12
27 400 0.81
28 34 0.07
29 2 0.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTATTTT
Found at i:32671071 original size:40 final size:40
Alignment explanation
Indices: 32670973--32671235 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
32670963 TCCTCGTTCA
* * * * *
32670973 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
32671012 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32671052 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
32671092 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
32671132 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
32671172 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
32671212 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
32671236 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:32683099 original size:40 final size:40
Alignment explanation
Indices: 32683039--32683427 Score: 598
Period size: 40 Copynumber: 9.7 Consensus size: 40
32683029 TGAGCATTGG
32683039 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
32683079 AATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
32683119 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
32683159 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
32683199 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * **
32683239 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAC
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
32683279 GATATATCCGGGCTAAGACCCGAAGGCAATTAGGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * **
32683319 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAC
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * * *
32683359 GATATATCTGGGCTAAGACCCGAAGGCAATTAGGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
32683399 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
32683428 GTGTGTTTGC
Statistics
Matches: 316, Mismatches: 33, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 316 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:32685267 original size:12 final size:12
Alignment explanation
Indices: 32685250--32685280 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32685240 GCCGTGTCTC
32685250 GCACACGGCCAA
1 GCACACGGCCAA
*
32685262 GCACACGGGCAA
1 GCACACGGCCAA
32685274 GCACACG
1 GCACACG
32685281 CCCATGTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.39, G:0.29, T:0.00
Consensus pattern (12 bp):
GCACACGGCCAA
Found at i:32685834 original size:5 final size:6
Alignment explanation
Indices: 32685819--32685843 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32685809 AAATTTTGAA
32685819 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
32685844 CAAACAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Done.