Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 114 of 213
Found at i:32687725 original size:21 final size:20
Alignment explanation
Indices: 32687687--32687749 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
32687677 ATTCAATTTC
32687687 TCAATCC-AAT-ATA-CATT
1 TCAATCCAAATAATATCATT
32687704 TCAATACCACAATAAT-TCATT
1 TCAAT-CCA-AATAATATCATT
*
32687725 T-AATTCAAATAATATCATT
1 TCAATCCAAATAATATCATT
32687744 TGCAAT
1 T-CAAT
32687750 TTCCATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
17 5 0.14
18 8 0.22
19 8 0.22
20 6 0.16
21 10 0.27
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TCAATCCAAATAATATCATT
Found at i:32688860 original size:9 final size:10
Alignment explanation
Indices: 32688836--32688860 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32688826 TCCCATAATT
32688836 ATTTTTTACA
1 ATTTTTTACA
32688846 ATTTTTTACA
1 ATTTTTTACA
32688856 ATTTT
1 ATTTT
32688861 CCAAAGTCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTACA
Found at i:32689206 original size:23 final size:22
Alignment explanation
Indices: 32689163--32689206 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
32689153 TTCTAAGTCG
32689163 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
32689186 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
32689207 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:32689315 original size:45 final size:45
Alignment explanation
Indices: 32689251--32689339 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
32689241 AACAGATACT
* *
32689251 CGGTGGATTCAGAACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
*
32689296 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGT
32689340 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGAACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:32689408 original size:51 final size:49
Alignment explanation
Indices: 32689350--32689536 Score: 223
Period size: 51 Copynumber: 3.7 Consensus size: 49
32689340 TCAGTTCACA
*
32689350 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATCCG-TACACG
* * * * *
32689401 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCTGGTACACA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC-CGTACACG
* * *
32689452 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCTGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TCC-GTACACG
*
32689502 TAGTAGCCTACACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
32689537 CACTTTCACT
Statistics
Matches: 114, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.34
51 70 0.61
52 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATCCGTACACG
Found at i:32689528 original size:101 final size:101
Alignment explanation
Indices: 32689346--32689532 Score: 306
Period size: 101 Copynumber: 1.8 Consensus size: 101
32689336 ATGTTCAGTT
* *
32689346 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTA
32689411 CACATAGTACTACACACGTGATCGAAACTATCTGGTA
65 CACATAGTACTACACACGTGATCGAAACTATCTGGTA
*
32689448 CACATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCTG-TACACGTAGTAGCCT
1 CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCC-GATACACGTAGTAGCCT
32689511 ACACATAGTACTACACACGTGA
64 ACACATAGTACTACACACGTGA
32689533 CCATCACTTT
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
100 4 0.05
101 39 0.49
102 37 0.46
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTAC
ACATAGTACTACACACGTGATCGAAACTATCTGGTA
Found at i:32701570 original size:29 final size:29
Alignment explanation
Indices: 32701528--32701588 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
32701518 ATAAAAGTCG
32701528 TTTTTTATAAATTTACCGAAATGGGCCGAT
1 TTTTTTATAAATTTACCGAAATGGGCC-AT
* *
32701558 TTTTTTAT-TATTTACCGGAATGGGCCAT
1 TTTTTTATAAATTTACCGAAATGGGCCAT
32701586 TTT
1 TTT
32701589 CCCCGAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 5 0.17
29 16 0.55
30 8 0.28
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.46
Consensus pattern (29 bp):
TTTTTTATAAATTTACCGAAATGGGCCAT
Found at i:32711398 original size:124 final size:124
Alignment explanation
Indices: 32711208--32711462 Score: 379
Period size: 124 Copynumber: 2.1 Consensus size: 124
32711198 AAATAGTGGG
** * ** *
32711208 AAATCGCTTCTACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGTGGTCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGATT
* *
32711273 TCGCTACAG-TGGTCATGTAAGAAATAATTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACG-TTTCTGAGAAAATAGTATA
32711332 AAATCGCTGATACCAGGATGCT-ATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGAT
1 AAATCGCTGATACCAGGATGCTAAT-TGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGAT
* * *
32711396 TTCACTACAGTTGGTCATGTAGGAAATAATTTTTTTTGACGTTTCTGAGAAAATAGTGTC
65 TTCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGAAAATAGTATA
32711456 AAATCGC
1 AAATCGC
32711463 GCCCTCGTGG
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
123 2 0.02
124 87 0.74
125 29 0.25
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTAATTGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACACGATT
TCACTACAGTTGGTCATGTAAGAAATAATTTTTTTTGACGTTTCTGAGAAAATAGTATA
Found at i:32714774 original size:29 final size:28
Alignment explanation
Indices: 32714733--32715693 Score: 693
Period size: 28 Copynumber: 35.6 Consensus size: 28
32714723 AATCAGGGTA
* *
32714733 AGGGTTTTCAATTAAATTAGGTTAGAGTT
1 AGGGTTTTTAATTAAATTAAGTTAG-GTT
* *
32714762 AGGGATTTTAATTAAGA-TAGGTTAGGGTT
1 AGGGTTTTTAATTAA-ATTAAGTTA-GGTT
* * *
32714791 AGGG-TTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
*
32714820 AGGGTTTTTAACT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
**
32714843 AGGGTTTTTAATTAAATTTGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
* * *
32714872 AGGGATTTTAATTAAAATAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
* * * *
32714901 AGGG-CTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
*
32714930 AGGGTTTTTTAATTAAATTAAATTAGGTT
1 AGGG-TTTTTAATTAAATTAAGTTAGGTT
*
32714959 AGGG--TTT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32714982 AGGGTTTTTAATTAAAATAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
*
32715011 AGGGTTTTTAACT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715034 AGGGATTTTAATT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715057 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715085 AGGGTTTTTAATTAAATTAAATTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715113 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715141 AGGGATTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715169 AGGGTTTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715197 AGGG--TTT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715220 AGGG-TTTTAATTTAAATTAGGTTAGGGTT
1 AGGGTTTTTAA-TTAAATTAAGTTA-GGTT
* * *
32715249 AGGG-TTTTCATGTAAAATAGGTTAGGGTT
1 AGGGTTTTTAAT-TAAATTAAGTTA-GGTT
* *
32715278 AGGGTTAGGGTTT--TT-AACTAAATTAGGTT
1 AGGGTT----TTTAATTAAATTAAGTTAGGTT
* *
32715307 AGGGTTTTTAATTAAATTAAATTAGTTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
32715335 AGGGTTTTTAATT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715358 AGGGTTTTTAATTAAGTTAAGTTA-G--
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715383 A--GTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
* * **
32715410 AGGGTTAGGGTTTTCATGTAAAATGGGTTAGGGTT
1 AGGG-T----TTTTAAT-TAAATTAAGTTA-GGTT
*
32715445 AGGGTTTTTAACT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715468 AGGGTTTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
32715496 AGGG-TTTTAATT--A--AA-TTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715518 AGGGTTTTTAATTAAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715546 AGGG--TTT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715569 AGGGTTTTTAATTAAATTAGGTTAGGGTA
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
32715598 AGGGTTTTTAATTAAATTAAGTTAGGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
*
32715626 AGGG---TT--TT-AATTAAGTTAAGTT
1 AGGGTTTTTAATTAAATTAAGTTAGGTT
* *
32715648 AGGGTTTTTAACTAAATTAGGTTAGGGTT
1 AGGGTTTTTAATTAAATTAAGTTA-GGTT
*
32715677 AGGGTTTTTAATCAAAT
1 AGGGTTTTTAATTAAAT
32715694 AATGTCAAAA
Statistics
Matches: 782, Mismatches: 69, Indels: 162
0.77 0.07 0.16
Matches are distributed among these distances:
22 28 0.04
23 168 0.21
24 20 0.03
25 22 0.03
26 10 0.01
27 30 0.04
28 226 0.29
29 212 0.27
30 30 0.04
31 6 0.01
32 1 0.00
34 10 0.01
35 19 0.02
ACGTcount: A:0.32, C:0.01, G:0.24, T:0.43
Consensus pattern (28 bp):
AGGGTTTTTAATTAAATTAAGTTAGGTT
Found at i:32714894 original size:23 final size:23
Alignment explanation
Indices: 32714816--32715409 Score: 263
Period size: 23 Copynumber: 22.4 Consensus size: 23
32714806 AATAGGTTAG
*
32714816 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32714839 GGTTAGGGTTTTTAATTAAATTTGGTTA
1 GGTTAGGGTTTTTAATTAAA-----TTA
* *
32714867 GGGTTAGGGATTTTAATTAAAATA
1 -GGTTAGGGTTTTTAATTAAATTA
*
32714891 GGTTAGGGTTAGGGCTTTCATGTAAAATAGGTTA
1 GGTTAGGGTT-----TTTAAT-T-AA--A--TTA
32714925 GGGTTAGGGTTTTTTAATTAAATTAAATTA
1 -GGTTAGGG-TTTTTAATTAA-----ATTA
*
32714955 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
32714978 AGTTAGGGTTTTTAATTAAAATAGGTTA
1 GGTTAGGGTTTTTAATT--AA-A--TTA
*
32715006 GGGTTAGGGTTTTTAACTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
*
32715030 GGTTAGGGATTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715053 GGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
32715081 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
32715109 AGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
32715137 GGTTAGGGATTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
32715165 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
32715193 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
32715216 AGTTAGGG-TTTTAATTTAAATTA
1 GGTTAGGGTTTTTAA-TTAAATTA
* *
32715239 GGTTAGGGTTAGGGTTTTCATGTAAAATA
1 GGTTAGGG-T----TTTTAAT-TAAATTA
* * * *
32715268 GGTTAGGGTTAGGGTTAGGGTTTTTAACTA
1 GGTTAGGGTT---TTTA----ATTAAATTA
**
32715298 AATTAGGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAG-----GGTTTTT-----AATTAAATTA
*
32715331 GTTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
*
32715354 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
32715377 AGTTAGAGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715400 GGTTAGGGTT
1 GGTTAGGGTT
32715410 AGGGTTAGGG
Statistics
Matches: 466, Mismatches: 47, Indels: 116
0.74 0.07 0.18
Matches are distributed among these distances:
22 6 0.01
23 165 0.35
24 8 0.02
25 4 0.01
26 4 0.01
27 6 0.01
28 156 0.33
29 64 0.14
30 15 0.03
31 6 0.01
32 5 0.01
33 10 0.02
34 2 0.00
35 12 0.03
36 2 0.00
37 1 0.00
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.44
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:32715281 original size:35 final size:35
Alignment explanation
Indices: 32715239--32715312 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
32715229 ATTTAAATTA
**
32715239 GGTTAGGGTTAGGGTTTTCATGTAAAATAGGTTAG
1 GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
* *
32715274 GGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAG
1 GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
32715309 GGTT
1 GGTT
32715313 TTTAATTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.03, G:0.34, T:0.39
Consensus pattern (35 bp):
GGTTAGGGTTAGGGTTTTCAACTAAAATAGGTTAG
Found at i:32715468 original size:23 final size:23
Alignment explanation
Indices: 32715441--32715676 Score: 215
Period size: 23 Copynumber: 9.4 Consensus size: 23
32715431 AATGGGTTAG
*
32715441 GGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715464 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
32715492 GGTTAGGG-TTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715514 GGTTAGGGTTTTTAATTAAATTAAATTA
1 GGTTAGGG--TTT--TT-AATTAAATTA
*
32715542 GGTTAGGGTTTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
*
32715565 AGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715588 GGTTAGGGTAAGGGTTTTTAATTAAATTAAGTTA
1 GG-T----T-AGGGTTTTTAATT--A--AA-TTA
*
32715622 GGTTAGGG-TTTTAATTAAGTTA
1 GGTTAGGGTTTTTAATTAAATTA
* *
32715644 AGTTAGGGTTTTTAACTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
32715667 GGTTAGGGTT
1 GGTTAGGGTT
32715677 AGGGTTTTTA
Statistics
Matches: 180, Mismatches: 10, Indels: 46
0.76 0.04 0.19
Matches are distributed among these distances:
22 28 0.16
23 63 0.35
24 3 0.02
25 8 0.04
26 3 0.02
27 12 0.07
28 40 0.22
29 14 0.08
31 1 0.01
33 3 0.02
34 5 0.03
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.45
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:32715473 original size:35 final size:35
Alignment explanation
Indices: 32715378--32715473 Score: 105
Period size: 29 Copynumber: 2.9 Consensus size: 35
32715368 ATTAAGTTAA
* *
32715378 GTTAGAGTTTTTAATTAAATTAGGTTAGGGTTAGG
1 GTTAGGGTTTTTAACTAAATTAGGTTAGGGTTAGG
* **
32715413 GTTAGGGTTTTCATGTAAA--A---T-GGGTTAGG
1 GTTAGGGTTTTTAACTAAATTAGGTTAGGGTTAGG
32715442 GTTAGGGTTTTTAACTAAATTAGGTTAGGGTT
1 GTTAGGGTTTTTAACTAAATTAGGTTAGGGTT
32715474 TTTAATTAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
29 24 0.50
30 1 0.02
31 1 0.02
33 1 0.02
34 1 0.02
35 20 0.42
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (35 bp):
GTTAGGGTTTTTAACTAAATTAGGTTAGGGTTAGG
Found at i:32715684 original size:51 final size:51
Alignment explanation
Indices: 32714832--32715676 Score: 646
Period size: 51 Copynumber: 15.8 Consensus size: 51
32714822 GGTTTTTAAC
* *
32714832 TAAATTAGGTTAGGGTTTTTAATTAAATTTGGTTAGGGTTAGGGATTTTAATTAAAA
1 TAAATTAGGTTAGGGTTTTTAATTAAA-----TTA-GGTTAGGGTTTTTAATTAAAT
** * **
32714889 TAGGTTAGGGTTAGGGCTTTCATGTAAAATAGGTTAGGGTTAGGGTTTTTTAATTAAAT
1 TAAATTA-GGTTAGGG-TTT--T-T-AATTAAATTA-GGTTAGGG-TTTTTAATTAAAT
* * *
32714948 TAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTTAGGGTTTTTAATTAAAA
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
** * *
32714999 TAGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGGG--ATT--TT-AAT
1 TAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
32715046 TAAATTAGGTTAGGGATTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAAT
1 TAAATTAGGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAAT
* *
32715102 TAAATTAAGTTAGGGATTTTAATTAAATTAAATTAGGTTAGGGATTTTAATTAAAT
1 TAAATTAGGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAAT
*
32715158 TAAATTAGGTTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTTTAATTAAGT
1 TAAATTAGGTTAGGG--TTT--TT-AATTAAATTAGGTTAGGGTTTTTAATTAAAT
*
32715214 T--A--A-GTTAGGG-TTTTAATTTAAATTAGGTTAGGGTTAGGGTTTTCATGTAAAATAGGT
1 TAAATTAGGTTAGGGTTTTTAA-TTAAATTAGGTTAGGG-T----TTTTAAT-T--AA-A--T
** *
32715271 TAGGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGGGTTTTTAATTAAAT
1 TA-AATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
* *
32715324 TAAATTAGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAGT
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
* * * **
32715375 T--A--A-GTTAGAGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTAGGGTTTTCAT
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT---TTTA---ATTAAAT
*
32715427 GTAAAATGGGTTAGGGTTAGGGTTTTTAACTAAATTAGGTTAGGGTTTTTAATTAAAT
1 -T-AAA----TTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
32715485 TAAATTAGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
* *
32715535 TAAATTAGGTTAGGGTTTTTAATTAAGTTAAGTTAGGGTTTTTAATTAAAT
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
** * * ***** *
32715586 TAGGTTAGGGTAAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTAAT
1 TAAATTA-GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
* * *
32715637 TAAGTTAAGTTAGGGTTTTTAACTAAATTAGGTTAGGGTT
1 TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
32715677 AGGGTTTTTA
Statistics
Matches: 658, Mismatches: 71, Indels: 124
0.77 0.08 0.15
Matches are distributed among these distances:
45 2 0.00
46 56 0.09
47 9 0.01
48 7 0.01
49 4 0.01
50 77 0.12
51 154 0.23
52 72 0.11
53 14 0.02
54 4 0.01
55 4 0.01
56 116 0.18
57 11 0.02
58 33 0.05
59 25 0.04
61 4 0.01
62 3 0.00
63 5 0.01
64 52 0.08
65 6 0.01
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.44
Consensus pattern (51 bp):
TAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAAT
Found at i:32717856 original size:14 final size:15
Alignment explanation
Indices: 32717839--32717872 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
32717829 AATAAATATC
32717839 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
32717853 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
32717868 TAAAA
1 TAAAA
32717873 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:32718099 original size:22 final size:22
Alignment explanation
Indices: 32718069--32718110 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
32718059 ATTTGGAGAT
*
32718069 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
32718091 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
32718111 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:32718118 original size:30 final size:30
Alignment explanation
Indices: 32718082--32718140 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
32718072 TTGAAGGAAA
*
32718082 TTGAGAGGATTTTGGAAGGAATTTGAGAGT
1 TTGAGAGAATTTTGGAAGGAATTTGAGAGT
32718112 TTGAGAGAATTTTGGAAGGAATTTGAGAG
1 TTGAGAGAATTTTGGAAGGAATTTGAGAG
32718141 AATTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (30 bp):
TTGAGAGAATTTTGGAAGGAATTTGAGAGT
Found at i:32718131 original size:52 final size:51
Alignment explanation
Indices: 32718060--32718162 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
32718050 TTAATATGGA
* * *
32718060 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAA-TTGAGAG
* *
32718111 TTTGAGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAACGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
32718163 AATTTTTGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 4 0.09
52 37 0.82
53 4 0.09
ACGTcount: A:0.33, C:0.01, G:0.32, T:0.34
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAACGGAATTGAGAG
Found at i:32718136 original size:22 final size:22
Alignment explanation
Indices: 32718111--32718181 Score: 108
Period size: 22 Copynumber: 3.2 Consensus size: 22
32718101 AATTTGAGAG
*
32718111 TTTGAGAGAATTTTGGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
32718133 TTTGAGAGAATTTTTGAACGGAA
1 TTTGAGAGAATTTTTGAA-GGAA
32718156 -TTGAGAGAATTTTTGAAGGAA
1 TTTGAGAGAATTTTTGAAGGAA
*
32718177 ATTGA
1 TTTGA
32718182 TATTGAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 4 0.09
22 38 0.83
23 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.28, T:0.34
Consensus pattern (22 bp):
TTTGAGAGAATTTTTGAAGGAA
Found at i:32724409 original size:23 final size:25
Alignment explanation
Indices: 32724377--32724439 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
32724367 TTTGCCCTCA
32724377 TCTCTGCCCTCTGCTGGTTCTTTG-
1 TCTCTGCCCTCTGCTGGTTCTTTGT
*
32724401 T-TCTGCCCTTTGCTGGTTCTTTGTT
1 TCTCTGCCCTCTGCTGGTTCTTTG-T
32724426 TCTCTGCCCTCTGC
1 TCTCTGCCCTCTGC
32724440 CGGTGAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 21 0.62
24 1 0.03
25 1 0.03
26 11 0.32
ACGTcount: A:0.00, C:0.33, G:0.19, T:0.48
Consensus pattern (25 bp):
TCTCTGCCCTCTGCTGGTTCTTTGT
Found at i:32724556 original size:41 final size:41
Alignment explanation
Indices: 32724499--32724583 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
32724489 TTGTCTGGGA
*
32724499 TTGATTTTCAATTTCCCTGCCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
32724540 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
1 TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
32724581 TTG
1 TTG
32724584 GCCTTGGAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.08, C:0.31, G:0.14, T:0.47
Consensus pattern (41 bp):
TTGATTTTCAATTTCCCTACCCTCTGCCCTTTGCTGGTTCT
Found at i:32727139 original size:13 final size:13
Alignment explanation
Indices: 32727121--32727160 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
32727111 AAACACTCAA
32727121 ATTTCTCAAAAGC
1 ATTTCTCAAAAGC
32727134 ATTTCTCAAAAGC
1 ATTTCTCAAAAGC
*
32727147 ACTTCTCAAAAGC
1 ATTTCTCAAAAGC
32727160 A
1 A
32727161 ATGAAGAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (13 bp):
ATTTCTCAAAAGC
Found at i:32734052 original size:102 final size:101
Alignment explanation
Indices: 32733872--32734215 Score: 415
Period size: 102 Copynumber: 3.4 Consensus size: 101
32733862 TATCGATGAA
* * *
32733872 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* *
32733937 TAAATGAATGCTACAATGTGTACCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGA-AAGCTTTGGT
* * *
32733974 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGATCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* *
32734039 TAAGTGAAGGCTACTATGTATACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCG-AAAGCTTTGGT
* * * *** * *
32734076 CACGTGTGTAGTACTATGTGAAGGCTATTATGTGAACCG-TAAAACTTGATCACGTGCGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
* * * * *
32734140 TATGTGAAGGCTACTACT-TGAACCGTAAAAC-TTGAT
66 TAAGTGAAGGCTAC-AATGTGTACCG-AAAGCTTTGGT
*
32734176 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
32734216 ATGATAAAAG
Statistics
Matches: 208, Mismatches: 31, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
100 39 0.19
101 42 0.20
102 126 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGATCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAAAGCTTTGGT
Found at i:32734142 original size:50 final size:50
Alignment explanation
Indices: 32733872--32734205 Score: 307
Period size: 51 Copynumber: 6.6 Consensus size: 50
32733862 TATCGATGAA
* * * * *** *
32733872 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
* ** * * * * *
32733923 CACATGTGTAGTACTAAATGAATGCTACAATGTGTACCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTA-AAAC-TTGAT
* * ** * ***
32733974 CATGTGTGTAGTACTGTGTGAAGGCTACTGCGTGAATCGATAAATGATGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAAACTTGAT
* * *
32734025 CACATGTGTAGTACTAAGTGAAGGCTACTATGT-ATACCG-AAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGA-ACCGTAAAA-C-TTGAT
*
32734076 CACGTGTGTAGTACTATGTGAAGGCTATTATGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTAAAACTTGAT
*
32734126 CACGTGCGTAGTACTATGTGAAGGCTACTACT-TGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTA-TGTGAACCGTAAAACTTGAT
32734176 CACGTGTGTAGTACTATGTGAAGGCTACTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTA
32734206 CGTGTATCGA
Statistics
Matches: 229, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
49 4 0.02
50 82 0.36
51 135 0.59
52 7 0.03
53 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTATGTGAACCGTAAAACTTGAT
Found at i:32737918 original size:43 final size:43
Alignment explanation
Indices: 32737870--32737956 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
32737860 AGGGTAAATC
* * * *
32737870 CAACAACCCATGTTTATCTTTTCATCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
*
32737913 CAACAACCCAAGATTATCTTGTCCTATTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
32737956 C
1 C
32737957 GAGGATAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.25, C:0.22, G:0.03, T:0.49
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTTGTCATATTTTTAAATTCTTTTTT
Found at i:32740041 original size:18 final size:17
Alignment explanation
Indices: 32740018--32740051 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32740008 TTCATTCAAT
32740018 AACATAAACATATCATAA
1 AACATAAACATA-CATAA
*
32740036 AACATACACATACATA
1 AACATAAACATACATA
32740052 TCATCTCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (17 bp):
AACATAAACATACATAA
Found at i:32740328 original size:55 final size:55
Alignment explanation
Indices: 32740269--32740377 Score: 146
Period size: 55 Copynumber: 2.0 Consensus size: 55
32740259 GTCCTCACCG
* * *
32740269 ATGTAACTCTTTAAGTAGGTTCACACGGCCATGTCACACGCCCGTGTGCCAGGCC
1 ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCC
* * ** *
32740324 ATGTAACTCTCTGAGTAGGGTCTCACGGCCATGTTGCAAGTCCGTGTGCCAGGC
1 ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGC
32740378 TGTGCAACTC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (55 bp):
ATGTAACTCTCTAAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCC
Found at i:32740387 original size:55 final size:55
Alignment explanation
Indices: 32740273--32740394 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
32740263 TCACCGATGT
* * * * *
32740273 AACTCTTTAAGTAGGTTCACACGGCCATGTCACACGCCCGTGTGCCAGGCCATGT
1 AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
* ** * **
32740328 AACTCTCTGAGTAGGGTCTCACGGCCATGTTGCAAGTCCGTGTGCCAGGCTGTGC
1 AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
32740383 AACTCTCTGAGT
1 AACTCTCTGAGT
32740395 TGCCCCACAC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.20, C:0.29, G:0.26, T:0.25
Consensus pattern (55 bp):
AACTCTCTGAGTAGGGTCACACGGCCATGTCACAAGCCCGTGTGCCAGGCCATGC
Found at i:32742642 original size:9 final size:9
Alignment explanation
Indices: 32742628--32742653 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32742618 TTTTCATAAT
32742628 CTTTTAGCC
1 CTTTTAGCC
32742637 CTTTTAGCC
1 CTTTTAGCC
32742646 CTTTTAGC
1 CTTTTAGC
32742654 TAATAGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.31, G:0.12, T:0.46
Consensus pattern (9 bp):
CTTTTAGCC
Found at i:32744926 original size:40 final size:40
Alignment explanation
Indices: 32744859--32745129 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
32744849 ATTACCACAA
* ** *
32744859 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32744899 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32744939 GCACAATTGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32744979 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32745019 GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
32745059 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
32745099 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
32745130 AAATTCAAAT
Statistics
Matches: 211, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 207 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:32744977 original size:80 final size:80
Alignment explanation
Indices: 32744859--32745129 Score: 470
Period size: 80 Copynumber: 3.4 Consensus size: 80
32744849 ATTACCACAA
* * ** * *
32744859 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32744924 CGGATATATCAACTT
66 CGGATATATCAACTT
* *
32744939 GCACAATTGCCTGCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32745004 CGGATATATCAACTT
66 CGGATATATCAACTT
32745019 GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
32745084 CGGATATATCAACTT
66 CGGATATATCAACTT
32745099 GCACAATTGCCTTCGGGACTTAGCCCGGATA
1 GCACAATTGCCTTCGGGACTTAGCCCGGATA
32745130 AAATTCAAAT
Statistics
Matches: 183, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 183 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAATTGCCTTCGGGACTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTT
Found at i:32751790 original size:21 final size:21
Alignment explanation
Indices: 32751766--32751812 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
32751756 GAAAGAAAAA
32751766 ACAAACACTTTCTTAAAGTAG
1 ACAAACACTTTCTTAAAGTAG
32751787 ACAAACACTTTCTTAAAGTAG
1 ACAAACACTTTCTTAAAGTAG
*
32751808 CCAAA
1 ACAAA
32751813 GCCCTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.26
Consensus pattern (21 bp):
ACAAACACTTTCTTAAAGTAG
Found at i:32751820 original size:21 final size:21
Alignment explanation
Indices: 32751766--32751821 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
32751756 GAAAGAAAAA
*
32751766 ACAAACACTTTCTTAAAGTAG
1 ACAAACACCTTCTTAAAGTAG
*
32751787 ACAAACACTTTCTTAAAGTAG
1 ACAAACACCTTCTTAAAGTAG
*
32751808 CCAAAGC-CCTTCTT
1 ACAAA-CACCTTCTT
32751822 TTTCAATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.29
Consensus pattern (21 bp):
ACAAACACCTTCTTAAAGTAG
Found at i:32761417 original size:21 final size:21
Alignment explanation
Indices: 32761391--32761446 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
32761381 AACAACAGTG
* *
32761391 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTATA
*
32761412 GCGGTGAGATTGGATACTATA
1 GCGGTGAGATTAGATACTATA
*
32761433 GGGGTGAGATTAGA
1 GCGGTGAGATTAGA
32761447 AATAATGGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:32761725 original size:35 final size:34
Alignment explanation
Indices: 32761614--32761732 Score: 97
Period size: 35 Copynumber: 3.5 Consensus size: 34
32761604 ATAATTAAAA
32761614 TATTAAAATTATA--TACAATAAAATTAAAATAT
1 TATTAAAATTATATTTACAATAAAATTAAAATAT
* * * *
32761646 T-TTTAAATTATATTCATAATAACATGTCAAAATAT
1 TATTAAAATTATATTTACAATAAAAT-T-AAAATAT
32761681 T-TTACAAATTATATTTA-AATAAAATAATAAAATAT
1 TATTA-AAATTATATTTACAATAAAAT--TAAAATAT
*
32761716 ATATT-AAATTGTATTTA
1 -TATTAAAATTATATTTA
32761733 TAGTAAATTT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
31 10 0.14
32 1 0.01
33 8 0.11
34 1 0.01
35 35 0.50
36 13 0.19
37 2 0.03
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (34 bp):
TATTAAAATTATATTTACAATAAAATTAAAATAT
Found at i:32761783 original size:17 final size:18
Alignment explanation
Indices: 32761750--32761783 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32761740 TTTATAAATA
*
32761750 AAAATTATAATTCTATTG
1 AAAATTATAATTATATTG
32761768 AAAATTA-AATTATATT
1 AAAATTATAATTATATT
32761784 AAATAATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AAAATTATAATTATATTG
Found at i:32766720 original size:24 final size:22
Alignment explanation
Indices: 32766698--32766745 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
32766688 ATAATATATG
*
32766698 TAAAGAAAATGGAAATAACATA
1 TAAAAAAAATGGAAATAACATA
*
32766720 TAAAAAAAATGGAAA-AGCATA
1 TAAAAAAAATGGAAATAACATA
32766741 TAAAA
1 TAAAA
32766746 TCTAAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.67, C:0.04, G:0.12, T:0.17
Consensus pattern (22 bp):
TAAAAAAAATGGAAATAACATA
Found at i:32769479 original size:26 final size:26
Alignment explanation
Indices: 32769448--32769520 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
32769438 ATATATGTGT
*
32769448 GAAAATCTGTATGTA-TATAATATAAA
1 GAAAAT-TGTATGTATTATAAAATAAA
*
32769474 GAAAA-TGTATGAATTATAAAATAAA
1 GAAAATTGTATGTATTATAAAATAAA
*
32769499 -AAAATGTATATGTATTATAAAA
1 GAAAAT-TGTATGTATTATAAAA
32769521 CGTATGTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 11 0.28
25 10 0.25
26 19 0.47
ACGTcount: A:0.55, C:0.01, G:0.11, T:0.33
Consensus pattern (26 bp):
GAAAATTGTATGTATTATAAAATAAA
Found at i:32769482 original size:24 final size:24
Alignment explanation
Indices: 32769455--32769507 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
32769445 TGTGAAAATC
* *
32769455 TGTATGTA-TATAATATAAAGAAAA
1 TGTATGAATTATAAAATAAA-AAAA
32769479 TGTATGAATTATAAAATAAAAAAA
1 TGTATGAATTATAAAATAAAAAAA
32769503 TGTAT
1 TGTAT
32769508 ATGTATTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (24 bp):
TGTATGAATTATAAAATAAAAAAA
Found at i:32771352 original size:50 final size:50
Alignment explanation
Indices: 32771290--32771752 Score: 305
Period size: 50 Copynumber: 9.3 Consensus size: 50
32771280 GATCTGTAAT
* *
32771290 CTTCAATTTGTTCAACTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* ** * * *** * *
32771340 CTTCAATCTGTTCCATTGCACCGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * * * *
32771390 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
*** * * * *** * *
32771440 CTTCAATCTGTTCTGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * * *
32771490 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * * * * * *** * *
32771540 CTCCAATCTGTTCCACTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * * * *
32771590 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCCGCCATCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * *** * * * *** * *
32771640 CTCCAATCTATTCTGCTGCACTGCTAAGGAAGTAAGATCCGCCGTTGTGG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
* * * * ***
32771690 CTTCAATCTTTTTAATTGCAATATCAGGGAAACCAGATCTATCGTCGTAG
1 CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
*
32771740 CTTTAATCTGTTC
1 CTTCAATCTGTTC
32771753 CGCTGCGTTG
Statistics
Matches: 285, Mismatches: 128, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
50 285 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
CTTCAATCTGTTCAATTGCAATGTTAGGGAAACCAGATCCGCCGTCGTAG
Found at i:32771466 original size:100 final size:100
Alignment explanation
Indices: 32771306--32771803 Score: 825
Period size: 100 Copynumber: 5.0 Consensus size: 100
32771296 TTTGTTCAAC
* * ** *
32771306 TGCAATGTTAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCATTGCACCGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
32771371 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* *
32771406 TGCAATATCAGGGAAACCAGATCTGCCGTCGTAGCTTCAATCTGTTCTGCTGCACTGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
32771471 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* *
32771506 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTCCAATCTGTTCCACTGCACTGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
32771571 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
* * * *
32771606 TGCAATATCAGGGAAACCAGATCCGCCATCGTAGCTCCAATCTATTCTGCTGCACTGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
32771671 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
*** * **
32771706 TGCAATATCAGGGAAACCAGATCTATCGTCGTAGCTTTAATCTGTTCCGCTGCGTTGCTAAGGAA
1 TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
32771771 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTA
66 GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTA
32771804 CTTTTCAACC
Statistics
Matches: 373, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 373 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (100 bp):
TGCAATATCAGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTGTTCCGCTGCACTGCTAAGGAA
GTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAAT
Found at i:32779849 original size:20 final size:20
Alignment explanation
Indices: 32779824--32779863 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32779814 TAAAGGTTTT
*
32779824 TAATGCATATGATGTGATGC
1 TAATGCATATGATGCGATGC
32779844 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
32779864 ATGAGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (20 bp):
TAATGCATATGATGCGATGC
Found at i:32783746 original size:25 final size:24
Alignment explanation
Indices: 32783714--32783762 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
32783704 TATAAATATA
32783714 ATATATAAATAAACTATGAGAAAAT
1 ATATATAAATAAA-TATGAGAAAAT
* *
32783739 ATATATAAATATATATGCGAAAAT
1 ATATATAAATAAATATGAGAAAAT
32783763 CTGTATGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (24 bp):
ATATATAAATAAATATGAGAAAAT
Found at i:32783825 original size:27 final size:25
Alignment explanation
Indices: 32783764--32783830 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
32783754 TGCGAAAATC
* *
32783764 TGTATGTA-TATAATATAAAGAAAA
1 TGTATGTATTATAAAATAAAAAAAA
*
32783788 TGTATGAATTATAAAATAAAAAAAA
1 TGTATGTATTATAAAATAAAAAAAA
32783813 TGTATATGTATTATAAAA
1 TG--TATGTATTATAAAA
32783831 CGTATGTATG
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 7 0.19
25 16 0.44
27 13 0.36
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (25 bp):
TGTATGTATTATAAAATAAAAAAAA
Found at i:32787855 original size:39 final size:39
Alignment explanation
Indices: 32787744--32787857 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 39
32787734 TTTTGGACAA
* *
32787744 AAAACGCCACTAAAAATCGAGCATTAGCGGCGCTTTACGT
1 AAAATGCCACTAAAAATCGAGCATTAGCGGCG-TTTACGG
* * *
32787784 AAAATGCCGCTAAAGATCGAGCATTAGCGGCGTTTCCAGG
1 AAAATGCCACTAAAAATCGAGCATTAGCGGCGTTTAC-GG
*
32787824 AAAGA-GCCACTAAAAAT-TAGCATTAGCGGCGTTT
1 AAA-ATGCCACTAAAAATCGAGCATTAGCGGCGTTT
32787858 TTTGGAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
39 20 0.31
40 43 0.67
41 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (39 bp):
AAAATGCCACTAAAAATCGAGCATTAGCGGCGTTTACGG
Found at i:32787959 original size:41 final size:41
Alignment explanation
Indices: 32787902--32788141 Score: 365
Period size: 41 Copynumber: 5.9 Consensus size: 41
32787892 AAAGTACCTT
*
32787902 TCAGATCTTTAGCGGCGTTTTT-AAAAAGGCGCTGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAA-GCGCCGCTAATGC
* *
32787943 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
32787984 TCAGATCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
32788025 TCAGATCTTTAGCGGCATTTTTGAGAAAGCGCTGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
32788066 TCAGATCTTTAGTGGTGTTTTTAAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
32788107 TCAGATATTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
32788142 ATAAACATTT
Statistics
Matches: 182, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
41 178 0.98
42 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (41 bp):
TCAGATCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:32788556 original size:14 final size:14
Alignment explanation
Indices: 32788526--32788578 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
32788516 GGGTTGTGAT
* *
32788526 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
*
32788540 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
32788554 TTAAGGGTTAGAGA
1 TTAAGGGTTAGGGG
*
32788568 TTAAGAGTTAG
1 TTAAGGGTTAG
32788579 AGATTTAAGG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.26, C:0.00, G:0.40, T:0.34
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:32788579 original size:14 final size:14
Alignment explanation
Indices: 32788554--32788583 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
32788544 GGGTTAGGGG
*
32788554 TTAAGGGTTAGAGA
1 TTAAGAGTTAGAGA
32788568 TTAAGAGTTAGAGA
1 TTAAGAGTTAGAGA
32788582 TT
1 TT
32788584 TAAGGTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (14 bp):
TTAAGAGTTAGAGA
Found at i:32788782 original size:22 final size:22
Alignment explanation
Indices: 32788757--32788808 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
32788747 TATTAAATAA
* *
32788757 GGTTTAGAGGTTAGTGGTTTGG
1 GGTTTAGAGGTTAGTGATTTAG
*
32788779 GGTTAAGA-GTTAGTGATTTAG
1 GGTTTAGAGGTTAGTGATTTAG
32788800 GGTTTAGAG
1 GGTTTAGAG
32788809 ATTCAGGGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (22 bp):
GGTTTAGAGGTTAGTGATTTAG
Found at i:32789680 original size:7 final size:7
Alignment explanation
Indices: 32789668--32789703 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
32789658 AAAGAGGGGC
32789668 TAAGGGT
1 TAAGGGT
32789675 TAAGGGT
1 TAAGGGT
32789682 TAAGGGT
1 TAAGGGT
*
32789689 TAGGGGT
1 TAAGGGT
*
32789696 TTAGGGT
1 TAAGGGT
32789703 T
1 T
32789704 TATGTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (7 bp):
TAAGGGT
Found at i:32789704 original size:7 final size:7
Alignment explanation
Indices: 32789670--32789778 Score: 51
Period size: 7 Copynumber: 15.4 Consensus size: 7
32789660 AGAGGGGCTA
*
32789670 AGGGTTA
1 AGGGTTT
*
32789677 AGGGTTA
1 AGGGTTT
32789684 AGGG-TT
1 AGGGTTT
32789690 AGGGGTTT
1 A-GGGTTT
32789698 AGGGTTT
1 AGGGTTT
* *
32789705 ATGTTTT
1 AGGGTTT
* *
32789712 ATGATTT
1 AGGGTTT
32789719 AGGGTTTT
1 AGGG-TTT
** *
32789727 AAAG-AT
1 AGGGTTT
32789733 AGTGGTTT
1 AG-GGTTT
32789741 AGGGTTT
1 AGGGTTT
32789748 AGGGTTT
1 AGGGTTT
* *
32789755 ATGTTTT
1 AGGGTTT
***
32789762 ATAATTT
1 AGGGTTT
32789769 AGGGTTT
1 AGGGTTT
32789776 AGG
1 AGG
32789779 AGATAGGGGT
Statistics
Matches: 78, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
6 4 0.05
7 63 0.81
8 11 0.14
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (7 bp):
AGGGTTT
Found at i:32789783 original size:50 final size:50
Alignment explanation
Indices: 32789685--32789799 Score: 160
Period size: 50 Copynumber: 2.3 Consensus size: 50
32789675 TAAGGGTTAA
* *
32789685 GGGTTAGGGGTTTAGGGTTTATGTTTTATGATTTAGGGTTTTAAAGATAG
1 GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTAAAGATAG
* * *
32789735 TGGTTTAGGGTTTAGGGTTTATGTTTTATAATTTAGGG-TTTAGGAGATAG
1 GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTA-AAGATAG
*
32789785 GGGTTAAAGGTTTAG
1 GGGTTAAGGGTTTAG
32789800 ATTAATCAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
49 4 0.07
50 52 0.93
ACGTcount: A:0.23, C:0.00, G:0.34, T:0.43
Consensus pattern (50 bp):
GGGTTAAGGGTTTAGGGTTTATGTTTTATAATTTAGGGTTTTAAAGATAG
Found at i:32790667 original size:23 final size:21
Alignment explanation
Indices: 32790625--32790668 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
32790615 CCCTTCCCTC
*
32790625 CAAAACCCAAATTCCTTCAAA
1 CAAAACCCAAACTCCTTCAAA
32790646 CAAAACCCAAACCCTCCTTCAAA
1 CAAAACCCAAA--CTCCTTCAAA
32790669 TTATGCTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 11 0.55
23 9 0.45
ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16
Consensus pattern (21 bp):
CAAAACCCAAACTCCTTCAAA
Found at i:32791595 original size:43 final size:43
Alignment explanation
Indices: 32791542--32791852 Score: 398
Period size: 43 Copynumber: 7.3 Consensus size: 43
32791532 TATATGTTTT
* * * * *
32791542 TAGCGACGTTTGTGGGAAAAGTGCCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
* * * * *
32791585 TAGCGGCGTTTGTGGAAAAAACGCGGCTAAAAGTCATGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
32791628 TAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAA-GTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCT-AAAGGTCATGATCTA
* * * *
32791671 TAACGTCGTTTGTGGGATAAGCGCCGCTAAAGGTTC-TGACCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGATCTA
*
32791714 TAGCGGCGTTTGT-GTAAAAGCGCCGCTAAAGGTTC-TGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGATCTA
*
32791756 TAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGTCCA-GATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGT-CATGATCTA
*
32791799 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
32791842 TAGCGGCGTTT
1 TAGCGGCGTTT
32791853 ATTTCTAAAA
Statistics
Matches: 235, Mismatches: 26, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
42 45 0.19
43 185 0.79
44 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGATCTA
Found at i:32791797 original size:128 final size:129
Alignment explanation
Indices: 32791548--32791852 Score: 404
Period size: 128 Copynumber: 2.4 Consensus size: 129
32791538 TTTTTAGCGA
* * * * *
32791548 CGTTTGTGGGAAAAGTGCCGCTAAAGATCTTGAGCTATAGCGGCGTTTGTGGAAAAAACGCGGCT
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGCT
*
32791613 AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGT
66 AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGG
* * *
32791677 CGTTTGTGGGATAAGCGCCGCTAAAGGTTC-TGACCTATAGCGGCGTTTGT-GTAAAAGCGCCGC
1 CGTTTGTGGGAAAAGCGCCGCTAAAGG-TCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGC
* * * *
32791740 TAAAGGTTC-TGATCTATAGCGGCGTTTGTGGGAGAAGCGCCGCT-AAAGGTCCA-GATCTATAG
65 TAAAAG-TCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAA-GT-CATGATCTATAA
32791802 CGG
127 CGG
* *
32791805 CGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGATCTATAGCGGCGTTT
1 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTT
32791853 ATTTCTAAAA
Statistics
Matches: 156, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
127 5 0.03
128 102 0.65
129 47 0.30
130 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (129 bp):
CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGACCTATAGCGGCGTTTGTGGAAAAAACGCCGCT
AAAAGTCATGACCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTGAAAGTCATGATCTATAACGG
Found at i:32792135 original size:19 final size:19
Alignment explanation
Indices: 32792113--32792152 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
32792103 TTGAATTGTC
*
32792113 AAAA-TACATTTGAATAACA
1 AAAACTACATTT-AAGAACA
32792132 AAAACTACATTTAAGAACA
1 AAAACTACATTTAAGAACA
32792151 AA
1 AA
32792153 GTTAGACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAACTACATTTAAGAACA
Found at i:32806884 original size:17 final size:17
Alignment explanation
Indices: 32806862--32806898 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
32806852 ATTCATAAAG
32806862 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
32806879 TATGTAAAATTGAATGA
1 TATGTAAAATTGAATGA
32806896 TAT
1 TAT
32806899 TGATAGATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
TATGTAAAATTGAATGA
Found at i:32808392 original size:88 final size:88
Alignment explanation
Indices: 32808267--32808464 Score: 238
Period size: 88 Copynumber: 2.2 Consensus size: 88
32808257 GACCCAGAGT
* *
32808267 GAAACATGTGTCAAATGGGCCTAAAACCCGCTTAGAATGTCAGTCCCAAGTATAGAGAGGACCAC
1 GAAACATGTGTCAAGTGGGCCTAAAACCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
*
32808332 GTACACTACAGGCGACCCAAGG-C
66 GTACACTACAGGCAACCC-AGGAC
* * * * *
32808355 GAAACATGTGTCCAGTGGGCCTAAAGCCCG-TTCAGAATGTCAGCCCCAGGTGTAGAGAGGACTA
1 GAAACATGTGTCAAGTGGGCCTAAAACCCGCTT-AGAATGTCAGCCCCAAGTATAGAGAGGACCA
* *
32808419 TGTACACTATAGGCAACCCAGGAC
65 CGTACACTACAGGCAACCCAGGAC
* * * *
32808443 AAAACACGTGTCTAGTAGGCCT
1 GAAACATGTGTCAAGTGGGCCT
32808465 GGAGCCTACG
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 5 0.05
88 89 0.95
ACGTcount: A:0.32, C:0.25, G:0.25, T:0.18
Consensus pattern (88 bp):
GAAACATGTGTCAAGTGGGCCTAAAACCCGCTTAGAATGTCAGCCCCAAGTATAGAGAGGACCAC
GTACACTACAGGCAACCCAGGAC
Found at i:32810396 original size:21 final size:21
Alignment explanation
Indices: 32810370--32810421 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
32810360 TTATTATTAA
32810370 GTCTCGAGACAACATGAACAT
1 GTCTCGAGACAACATGAACAT
32810391 GTCTCGAGACAACATGAACAT
1 GTCTCGAGACAACATGAACAT
*
32810412 GTCTCAAGAC
1 GTCTCGAGAC
32810422 CATAAGAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (21 bp):
GTCTCGAGACAACATGAACAT
Found at i:32811405 original size:26 final size:26
Alignment explanation
Indices: 32811351--32811405 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
32811341 GAGGATTTAG
*
32811351 TTATTATTATTTGATATTAGATAGTT
1 TTATTATTATTTGATATTAGATAATT
*
32811377 TTATTATTATTTGATTTTAG-TAATAT
1 TTATTATTATTTGATATTAGATAAT-T
32811403 TTA
1 TTA
32811406 CACAATTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.60
Consensus pattern (26 bp):
TTATTATTATTTGATATTAGATAATT
Found at i:32813167 original size:26 final size:27
Alignment explanation
Indices: 32813131--32813197 Score: 93
Period size: 29 Copynumber: 2.5 Consensus size: 27
32813121 AAAAATAATT
32813131 AAAATATTATAAATTTT-TTATTTACC
1 AAAATATTATAAATTTTATTATTTACC
*
32813157 AAAATATTATAATTATTTTATTATTTATC
1 AAAATATTATAA--ATTTTATTATTTACC
32813186 AAAATA-TATAAA
1 AAAATATTATAAA
32813198 AAAATAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 13 0.35
28 10 0.27
29 14 0.38
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
AAAATATTATAAATTTTATTATTTACC
Found at i:32813385 original size:18 final size:18
Alignment explanation
Indices: 32813355--32813411 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
32813345 GGGGGGGGGG
32813355 AGGAGAGGGAAAGAAAGGA
1 AGGAGA-GGAAAGAAAGGA
32813374 AGGAGAGGAAAGAAA-GA
1 AGGAGAGGAAAGAAAGGA
**
32813391 AAAAGAAGGAAAGAAAAGGA
1 AGGAG-AGGAAAG-AAAGGA
32813411 A
1 A
32813412 AGAAGAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 5 0.15
18 16 0.48
19 9 0.27
20 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (18 bp):
AGGAGAGGAAAGAAAGGA
Found at i:32813397 original size:10 final size:10
Alignment explanation
Indices: 32813386--32813495 Score: 53
Period size: 10 Copynumber: 10.5 Consensus size: 10
32813376 GAGAGGAAAG
32813386 AAAGAAA-AA
1 AAAGAAAGAA
*
32813395 GAAGGAAAGAA
1 -AAAGAAAGAA
*
32813406 AAGGAAAGAA
1 AAAGAAAGAA
* *
32813416 GAAGAAGAGGA
1 AAAGAA-AGAA
*
32813427 AATGAGAAGAAA
1 AAAGA-AAG-AA
32813439 AAAGAAAGAA
1 AAAGAAAGAA
*
32813449 AAAGAAGGAA
1 AAAGAAAGAA
*
32813459 AGAA-AAGGAA
1 A-AAGAAAGAA
*
32813469 AGGAGAAGAGAA
1 A-AAGAA-AGAA
*
32813481 AAAAAAAGAA
1 AAAGAAAGAA
*
32813491 GAAGA
1 AAAGA
32813496 GGGAAGGAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
10 48 0.62
11 20 0.26
12 10 0.13
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (10 bp):
AAAGAAAGAA
Found at i:32813426 original size:16 final size:16
Alignment explanation
Indices: 32813401--32813462 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
32813391 AAAAGAAGGA
*
32813401 AAGAAAAGGAAAGAAG
1 AAGAAGAGGAAAGAAG
32813417 AAGAAGAGGAAATG-AG
1 AAGAAGAGGAAA-GAAG
32813433 AAGAA-A--AAAGAAAG
1 AAGAAGAGGAAAG-AAG
*
32813447 AAAAAGAAGGAAAGAA
1 AAGAAG-AGGAAAGAA
32813463 AAGGAAAGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
12 1 0.03
13 3 0.08
14 6 0.16
15 1 0.03
16 19 0.51
17 3 0.08
18 4 0.11
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (16 bp):
AAGAAGAGGAAAGAAG
Found at i:32813480 original size:18 final size:18
Alignment explanation
Indices: 32813384--32813496 Score: 70
Period size: 18 Copynumber: 6.1 Consensus size: 18
32813374 AGGAGAGGAA
*
32813384 AGAAAGAAAAAGAAGGAA-
1 AGAAAAAAAAAGAA-GAAG
32813402 AGAAAAGGAAAGAAGAAGAAG
1 AGAAAA--AAA-AAGAAGAAG
** * *
32813423 AGGAAATGAGAAGAA-AAA
1 A-GAAAAAAAAAGAAGAAG
*
32813441 AGAAAGAAAAAGAAGGAA-
1 AGAAAAAAAAAGAA-GAAG
** *
32813459 AGAAAAGGAAAGGAGAAG
1 AGAAAAAAAAAGAAGAAG
32813477 AGAAAAAAAAAGAAGAAG
1 AGAAAAAAAAAGAAGAAG
32813495 AG
1 AG
32813497 GGAAGGAAGG
Statistics
Matches: 72, Mismatches: 15, Indels: 16
0.70 0.15 0.16
Matches are distributed among these distances:
17 13 0.18
18 35 0.49
19 7 0.10
20 7 0.10
21 6 0.08
22 4 0.06
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (18 bp):
AGAAAAAAAAAGAAGAAG
Found at i:32813503 original size:31 final size:30
Alignment explanation
Indices: 32813441--32813523 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 30
32813431 AGAAGAAAAA
* *
32813441 AGAA-AGAAAAAGAAGGAAAGAAAAGGAAAGG
1 AGAAGAGAAAAAAAAAG-AAGAAAAGGAAA-G
* *
32813472 AGAAGAGAAAAAAAAAGAAGAAGAGGGAAG
1 AGAAGAGAAAAAAAAAGAAGAAAAGGAAAG
*
32813502 -GAAG-GAAAAAAAAAGAAAAAAA
1 AGAAGAGAAAAAAAAAGAAGAAAA
32813524 AGGTAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
28 16 0.36
29 4 0.09
30 1 0.02
31 14 0.31
32 10 0.22
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (30 bp):
AGAAGAGAAAAAAAAAGAAGAAAAGGAAAG
Found at i:32813503 original size:36 final size:35
Alignment explanation
Indices: 32813400--32813523 Score: 106
Period size: 36 Copynumber: 3.4 Consensus size: 35
32813390 AAAAAGAAGG
*
32813400 AAAGAAAAGGAAAGAAGAAGAAGAGGAAATGAGAAGAAA
1 AAAGAAAA--AAA-AAGAAGAAGAGGAAAGGA-AAGAAA
* * *
32813439 AAAGAAAGAAAAAGAAGGAA-AGAAAAGGAAAGGAGA
1 AAAGAAAAAAAAAGAA-GAAGAGGAAAGGAAA-GAAA
* * *
32813475 AGAGAAAAAAAAAGAAGAAGAGGGAAGGAAGGAAA
1 AAAGAAAAAAAAAGAAGAAGAGGAAAGGAAAGAAA
*
32813510 AAAAAAGAAAAAAA
1 AAAGAA-AAAAAAA
32813524 AGGTAATTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
35 12 0.17
36 44 0.64
37 6 0.09
39 7 0.10
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (35 bp):
AAAGAAAAAAAAAGAAGAAGAGGAAAGGAAAGAAA
Found at i:32814287 original size:27 final size:27
Alignment explanation
Indices: 32814257--32814312 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
32814247 AAAGAGGGTG
*
32814257 ATGGAGGGGAATAAAAAAGCGGCACCA
1 ATGGAGAGGAATAAAAAAGCGGCACCA
*
32814284 ATGGAGAGGAATAAAAAGGCGGCACCA
1 ATGGAGAGGAATAAAAAAGCGGCACCA
32814311 AT
1 AT
32814313 ATTGGCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.45, C:0.14, G:0.32, T:0.09
Consensus pattern (27 bp):
ATGGAGAGGAATAAAAAAGCGGCACCA
Found at i:32819334 original size:18 final size:18
Alignment explanation
Indices: 32819311--32819345 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32819301 CCCAATGATC
*
32819311 GCCACCACCTTCTTCTTT
1 GCCACCACATTCTTCTTT
32819329 GCCACCACATTCTTCTT
1 GCCACCACATTCTTCTT
32819346 CACCCCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.43, G:0.06, T:0.37
Consensus pattern (18 bp):
GCCACCACATTCTTCTTT
Found at i:32820141 original size:3 final size:3
Alignment explanation
Indices: 32820133--32820161 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
32820123 ATCTTAAACT
32820133 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
32820162 TAATACTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:32820259 original size:22 final size:23
Alignment explanation
Indices: 32820214--32820262 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
32820204 ATAACTAACC
32820214 TAAAACAAAAAATATTACAAAATA
1 TAAAACAAAAAATA-TACAAAATA
32820238 TAAAA-AAAAAATA-ACAACAATA
1 TAAAACAAAAAATATACAA-AATA
32820260 TAA
1 TAA
32820263 TCAATTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.17
22 7 0.29
23 8 0.33
24 5 0.21
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.18
Consensus pattern (23 bp):
TAAAACAAAAAATATACAAAATA
Found at i:32820305 original size:13 final size:13
Alignment explanation
Indices: 32820287--32820317 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32820277 AAAAATACCT
32820287 TCTTTTTCTCTTC
1 TCTTTTTCTCTTC
32820300 TCTTTTTCTCTTC
1 TCTTTTTCTCTTC
32820313 T-TTTT
1 TCTTTT
32820318 CGCAACACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
TCTTTTTCTCTTC
Found at i:32820542 original size:27 final size:29
Alignment explanation
Indices: 32820509--32820579 Score: 94
Period size: 30 Copynumber: 2.5 Consensus size: 29
32820499 TTTTGTTTTT
32820509 TTATATATTTTGGTAAATAATAAAAA-TAA
1 TTATATATTTTGGTAAATAA-AAAAAGTAA
*
32820538 TTATAATATTTTGGTAAATAAAAAAAGTTA
1 TTAT-ATATTTTGGTAAATAAAAAAAGTAA
32820568 -TA-ATATTTTGGT
1 TTATATATTTTGGT
32820580 TATTTTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
27 10 0.26
29 11 0.28
30 18 0.46
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (29 bp):
TTATATATTTTGGTAAATAAAAAAAGTAA
Found at i:32820548 original size:30 final size:27
Alignment explanation
Indices: 32820509--32820579 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
32820499 TTTTGTTTTT
32820509 TTAT-ATATTTTGGTAAATAATAAAAATAA
1 TTATAATATTTTGGTAAAT-A-AAAAA-AA
*
32820538 TTATAATATTTTGGTAAATAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAA
32820565 TTATAATATTTTGGT
1 TTATAATATTTTGGT
32820580 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 16 0.40
28 5 0.12
29 5 0.12
30 14 0.35
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (27 bp):
TTATAATATTTTGGTAAATAAAAAAAA
Found at i:32824847 original size:9 final size:9
Alignment explanation
Indices: 32824833--32824858 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32824823 ATTAAAAAAA
32824833 TCGAATAAT
1 TCGAATAAT
32824842 TCGAATAAT
1 TCGAATAAT
32824851 TCGAATAA
1 TCGAATAA
32824859 CAAATTTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (9 bp):
TCGAATAAT
Found at i:32824959 original size:19 final size:19
Alignment explanation
Indices: 32824937--32825008 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
32824927 AAAAATACAA
*
32824937 AAAAATTTAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
32824956 AAAAAATTCAAAATACTTTT
1 -AAAAATTCAAAATAATTTT
*
32824976 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
32824995 ATAAATTCTAAAAT
1 AAAAATTC-AAAAT
32825009 TTTATATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.07
19 19 0.43
20 22 0.50
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:32824999 original size:20 final size:19
Alignment explanation
Indices: 32824938--32825014 Score: 79
Period size: 19 Copynumber: 4.1 Consensus size: 19
32824928 AAAATACAAA
* *
32824938 AAAATTTAAAATAATTTTAA
1 AAAATTCAAAAT-ATTTTAT
32824958 AAAATTCAAAATACTTTT-T
1 AAAATTCAAAATA-TTTTAT
32824977 AAAATTCAAAATA-TTTAT
1 AAAATTCAAAATATTTTAT
*
32824995 ATAAATTCTAAA-ATTTTAT
1 A-AAATTCAAAATATTTTAT
32825014 A
1 A
32825015 TTTTTAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
17 3 0.06
18 3 0.06
19 29 0.58
20 15 0.30
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATATTTTAT
Found at i:32829314 original size:24 final size:24
Alignment explanation
Indices: 32829262--32829420 Score: 103
Period size: 25 Copynumber: 6.4 Consensus size: 24
32829252 GTACATGTAT
* * *
32829262 GCTCATACGAGCTCTGAATCGGTAT
1 GCTCATACGAACTGT-AATCGGTAA
*
32829287 GCTCTTACGAACTGTAATCGGTAA
1 GCTCATACGAACTGTAATCGGTAA
32829311 GCTCATAC-AAGCTGAGTAAT-GGTAA
1 GCTCATACGAA-CT--GTAATCGGTAA
* *
32829336 GCTCATGCGAGCTG-AATAACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
* *
32829361 GCTCATACGAGCT-AAATGACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
* *
32829386 GCTCATACGAGCT-AAATGACGGTAA
1 GCTCATACGAACTGTAAT--CGGTAA
32829411 GCTCATACGA
1 GCTCATACGA
32829421 GGTGAAATTG
Statistics
Matches: 117, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
22 3 0.03
23 3 0.03
24 17 0.15
25 88 0.75
26 6 0.05
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (24 bp):
GCTCATACGAACTGTAATCGGTAA
Found at i:32829315 original size:49 final size:49
Alignment explanation
Indices: 32829262--32829421 Score: 153
Period size: 50 Copynumber: 3.2 Consensus size: 49
32829252 GTACATGTAT
* * *
32829262 GCTCATACGAGCTCTG-AATCGGTATGCTCTTACGAACTGTAAT-CGGTAA
1 GCTCATACGAGCTCAGTAAT-GGTAAGCTCATACGAACTG-AATACGGTAA
* * * *
32829311 GCTCATACAAGCTGAGTAATGGTAAGCTCATGCGAGCTGAATAACGGTAA
1 GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAAT-ACGGTAA
* * * * * *
32829361 GCTCATACGAGCTAAATGACGGTAAGCTCATACGAGCTAAATGACGGTAA
1 GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAAT-ACGGTAA
32829411 GCTCATACGAG
1 GCTCATACGAG
32829422 GTGAAATTGG
Statistics
Matches: 93, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
48 3 0.03
49 28 0.30
50 62 0.67
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (49 bp):
GCTCATACGAGCTCAGTAATGGTAAGCTCATACGAACTGAATACGGTAA
Found at i:32829419 original size:50 final size:50
Alignment explanation
Indices: 32829305--32829421 Score: 162
Period size: 50 Copynumber: 2.3 Consensus size: 50
32829295 GAACTGTAAT
* * * * * *
32829305 CGGTAAGCTCATACAAGCTGAGTAATGGTAAGCTCATGCGAGCTGAATAA
1 CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
* *
32829355 CGGTAAGCTCATACGAGCTAAATGACGGTAAGCTCATACGAGCTAAATGA
1 CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
32829405 CGGTAAGCTCATACGAG
1 CGGTAAGCTCATACGAG
32829422 GTGAAATTGG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (50 bp):
CGGTAAGCTCATACGAGCTAAATAACGGTAAGCTCATACGAGCTAAATAA
Found at i:32839062 original size:12 final size:13
Alignment explanation
Indices: 32839036--32839060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32839026 GAATTAGACT
32839036 TAAAATTTTTAAA
1 TAAAATTTTTAAA
32839049 TAAAATTTTTAA
1 TAAAATTTTTAA
32839061 TAGGTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAAATTTTTAAA
Found at i:32844689 original size:28 final size:28
Alignment explanation
Indices: 32844652--32844727 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
32844642 TGGTTATACA
*
32844652 TATATTATATATATGAATGGCTTTATTT
1 TATATAATATATATGAATGGCTTTATTT
* *
32844680 TATATAATATATATGCATGACTTTATTT
1 TATATAATATATATGAATGGCTTTATTT
* *
32844708 CATATAATATATATTAATGG
1 TATATAATATATATGAATGG
32844728 ATTTTGGTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (28 bp):
TATATAATATATATGAATGGCTTTATTT
Found at i:32849862 original size:14 final size:15
Alignment explanation
Indices: 32849845--32849875 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32849835 TTGGAAACAC
32849845 TTTT-AGAAATACTT
1 TTTTCAGAAATACTT
32849859 TTTTCAGAAATACTT
1 TTTTCAGAAATACTT
32849874 TT
1 TT
32849876 GTCGATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTTCAGAAATACTT
Found at i:32853110 original size:27 final size:27
Alignment explanation
Indices: 32853069--32853417 Score: 466
Period size: 27 Copynumber: 12.9 Consensus size: 27
32853059 TTAACTTTAT
*
32853069 CGAAATACCCTCGATGGATAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
*
32853096 CGAAACACTCC-CGATGGGTAAAATTAC
1 CGAAATAC-CCTCGATGGGTAAAATTAC
32853123 CGAAATACCCTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
32853150 TGAAATACCCTTGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
** *
32853177 TAAAATACCCTTGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
** *
32853204 TAAAATACCCTCGATAGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * * *
32853231 CAAAACAGCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
32853258 CGAAATACCCTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
32853285 CGAAATACCTTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* * *
32853312 TGAAATACCCTCGATAGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
32853339 CGAAATACCTTCGATGGGTAAAATTAC
1 CGAAATACCCTCGATGGGTAAAATTAC
* *
32853366 TGAAATACCCTCGATGGGTAAAATTAT
1 CGAAATACCCTCGATGGGTAAAATTAC
*
32853393 CGAAATACCTTCGATGGGTAAAATT
1 CGAAATACCCTCGATGGGTAAAATT
32853418 GACTGTTATG
Statistics
Matches: 287, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 283 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (27 bp):
CGAAATACCCTCGATGGGTAAAATTAC
Found at i:32868163 original size:39 final size:39
Alignment explanation
Indices: 32868109--32868185 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
32868099 TTATTCTAAT
32868109 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
1 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
32868148 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGT
1 GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGT
32868186 TAAGAAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (39 bp):
GTTTACAGCATGTTAGTAGAGTCACATGAAAATTTCGTA
Found at i:32869662 original size:50 final size:50
Alignment explanation
Indices: 32869555--32869745 Score: 220
Period size: 50 Copynumber: 3.7 Consensus size: 50
32869545 GGGGATAAGA
* **
32869555 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGG
32869611 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * **
32869661 TCCCCCGTAAGACCATGTCTGGGACATGGCATAGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * *
32869711 TCCAATGTAAGACCATATCTGGGATATGGCATTGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG
32869746 TAGTACAGGA
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
50 82 0.68
52 1 0.01
53 3 0.02
56 35 0.29
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:32869781 original size:49 final size:49
Alignment explanation
Indices: 32869617--32869796 Score: 175
Period size: 50 Copynumber: 3.6 Consensus size: 49
32869607 GAGGTCCCAC
* * ** ***
32869617 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAGGAGAACTCCAAT
* * *
32869667 GTAAGACCATGTCTGGGACATGGCATAGGCACCGATATGAGAACTCCAAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAGGAGAACTCCAAT
* * * *
32869717 GTAAGACCATATCTGGGATATGGCATTGGTA-GTACAGGA-AACATCCTAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAGGAGAAC-TCCAAT
*
32869766 GTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
32869797 TGTTATTATC
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
48 4 0.04
49 36 0.33
50 70 0.64
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACGACAGGAGAACTCCAAT
Found at i:32870023 original size:20 final size:20
Alignment explanation
Indices: 32869998--32870046 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
32869988 TGAGTTATTT
32869998 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
32870018 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
32870038 AAG-AAGCAA
1 AAGTAAGCAA
32870047 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:32874728 original size:10 final size:10
Alignment explanation
Indices: 32874698--32874731 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
32874688 ATTCAGCATA
32874698 AAATTGAAAAT
1 AAATT-AAAAT
32874709 AAACTTAAAAT
1 AAA-TTAAAAT
32874720 AAATTAAAAT
1 AAATTAAAAT
32874730 AA
1 AA
32874732 GAGTTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.41
11 11 0.50
12 2 0.09
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (10 bp):
AAATTAAAAT
Found at i:32878936 original size:24 final size:24
Alignment explanation
Indices: 32878904--32878950 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
32878894 TTGGACTAGC
32878904 ATGTAGATACTTCATTCTACTTGT
1 ATGTAGATACTTCATTCTACTTGT
32878928 ATGTAGATACTTCATTCTACTTG
1 ATGTAGATACTTCATTCTACTTG
32878951 ATGAGTGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (24 bp):
ATGTAGATACTTCATTCTACTTGT
Found at i:32885340 original size:6 final size:6
Alignment explanation
Indices: 32885326--32885365 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
32885316 AAACATAAAC
*
32885326 AAATT- AAATTA AAATTA AAATTA AAA-TC AAATTA AAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
32885366 TAAACAAAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 9 0.29
6 22 0.71
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (6 bp):
AAATTA
Found at i:32885342 original size:11 final size:11
Alignment explanation
Indices: 32885326--32885365 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
32885316 AAACATAAAC
32885326 AAATTAAATTA
1 AAATTAAATTA
32885337 AAATTAAAATTA
1 AAATT-AAATTA
*
32885349 AAATCAAATTA
1 AAATTAAATTA
32885360 AAATTA
1 AAATTA
32885366 TAAACAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATTAAATTA
Found at i:32885348 original size:17 final size:17
Alignment explanation
Indices: 32885326--32885411 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
32885316 AAACATAAAC
*
32885326 AAATTAAATTAAAATTA
1 AAATTAAAATAAAATTA
*
32885343 AAATTAAAATCAAATTA
1 AAATTAAAATAAAATTA
* *
32885360 AAATTATAAACAAAGATAA
1 AAATTA-AAATAAA-ATTA
*
32885379 AAATGAAAAATAGAAA-TA
1 AAAT-TAAAATA-AAATTA
*
32885397 AAACTAAAACTAAAA
1 AAATTAAAA-TAAAA
32885412 CTAGAAATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
17 28 0.52
18 11 0.20
19 12 0.22
20 3 0.06
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (17 bp):
AAATTAAAATAAAATTA
Found at i:32892068 original size:36 final size:36
Alignment explanation
Indices: 32892016--32892120 Score: 140
Period size: 36 Copynumber: 2.9 Consensus size: 36
32892006 AGTAAACTCT
* *
32892016 ATTCAGTTCAGTAGCCTTCCAGATCTATTCTGACTA
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
* * * * *
32892052 ATTCAGTCCAGCAGCCTTTCAGATCTATTTTAATTG
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
32892088 ATTCAGTTCAGCAGCCTTTC-GATCTATTCTGAC
1 ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGAC
32892121 CGATGCACTC
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 10 0.17
36 48 0.83
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (36 bp):
ATTCAGTTCAGCAGCCTTTCAGATCTATTCTGACTA
Found at i:32893531 original size:16 final size:16
Alignment explanation
Indices: 32893510--32893540 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32893500 TTCGAAAAAG
32893510 AATTTATACCTCCATC
1 AATTTATACCTCCATC
32893526 AATTTATACCTCCAT
1 AATTTATACCTCCAT
32893541 TCTCAGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (16 bp):
AATTTATACCTCCATC
Found at i:32898290 original size:14 final size:14
Alignment explanation
Indices: 32898271--32898301 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32898261 AATTACATTT
32898271 CATATAAACTTCCA
1 CATATAAACTTCCA
32898285 CATATAAACTTCCA
1 CATATAAACTTCCA
32898299 CAT
1 CAT
32898302 CATCCTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
CATATAAACTTCCA
Found at i:32900111 original size:80 final size:80
Alignment explanation
Indices: 32899978--32900140 Score: 326
Period size: 80 Copynumber: 2.0 Consensus size: 80
32899968 TCAAGAAGAA
32899978 TTAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATT
1 TTAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATT
32900043 TTCTGAGCAAACCCT
66 TTCTGAGCAAACCCT
32900058 TTAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATT
1 TTAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATT
32900123 TTCTGAGCAAACCCT
66 TTCTGAGCAAACCCT
32900138 TTA
1 TTA
32900141 ATGGATAGAG
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (80 bp):
TTAGGTGGTATAATGATTTATGATCTTTTAATTTTGAAGTTATGCTGAAAACATTCTTGTTGATT
TTCTGAGCAAACCCT
Found at i:32903518 original size:63 final size:63
Alignment explanation
Indices: 32903441--32903569 Score: 179
Period size: 63 Copynumber: 2.0 Consensus size: 63
32903431 AATATCTCTC
* * * * *
32903441 ACACGGCTTGGACACATGCTCGTGTCTCTAGCCCATGTGACC-CTATTTCCAAAACAATGAGTT
1 ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTG-CCTCTAATTCCAAAACAATGAGTT
* *
32903504 ACACGACTTGGACACACGCCCTTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAGTGAGTT
1 ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAATGAGTT
32903567 ACA
1 ACA
32903570 AGGCCTAACA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 2 0.03
63 56 0.97
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (63 bp):
ACACGACTTGGACACACGCCCGTGTCTCTACCCCATGTGCCTCTAATTCCAAAACAATGAGTT
Found at i:32904806 original size:16 final size:17
Alignment explanation
Indices: 32904785--32904820 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
32904775 AGAGTGGAAA
*
32904785 AAAATTGGAAGGGT-GG
1 AAAATTGAAAGGGTAGG
32904801 AAAATTGAAAGGGTAGG
1 AAAATTGAAAGGGTAGG
32904818 AAA
1 AAA
32904821 CTAGAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.17
Consensus pattern (17 bp):
AAAATTGAAAGGGTAGG
Found at i:32905014 original size:22 final size:22
Alignment explanation
Indices: 32904989--32905031 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32904979 CATATACCTC
32904989 TCTCTCATT-TTTTCTCTTCTCA
1 TCTCTC-TTATTTTCTCTTCTCA
*
32905011 TCTCTCTTATTTTCTTTTCTC
1 TCTCTCTTATTTTCTCTTCTC
32905032 TCACTTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (22 bp):
TCTCTCTTATTTTCTCTTCTCA
Found at i:32907385 original size:24 final size:24
Alignment explanation
Indices: 32907346--32907394 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
32907336 CTAGCATGAC
* *
32907346 ATTTTTTATTTCATCTTTTATTTT
1 ATTTTTTATTTCATCTATCATTTT
32907370 ATTTATTTATTT-ATCTATCATTTT
1 ATTT-TTTATTTCATCTATCATTTT
32907394 A
1 A
32907395 ATATTATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.69
Consensus pattern (24 bp):
ATTTTTTATTTCATCTATCATTTT
Found at i:32908681 original size:31 final size:32
Alignment explanation
Indices: 32908621--32908681 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
32908611 TTGGTGCAAT
* *
32908621 TATACATACGAAACTTTGATTGTGGTTCAAATG
1 TATACATA-GAAACTTTAATTGTGATTCAAATG
*
32908654 TATACAT-GAAACTTTAATTTTGATTCAA
1 TATACATAGAAACTTTAATTGTGATTCAA
32908682 TCATACACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 18 0.72
33 7 0.28
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.39
Consensus pattern (32 bp):
TATACATAGAAACTTTAATTGTGATTCAAATG
Found at i:32909107 original size:18 final size:18
Alignment explanation
Indices: 32909084--32909121 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32909074 AAAAATTTTT
*
32909084 TTATAAAGGTTATATATA
1 TTATAAAAGTTATATATA
*
32909102 TTATAAAATTTATATATA
1 TTATAAAAGTTATATATA
32909120 TT
1 TT
32909122 GACTTCATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
TTATAAAAGTTATATATA
Found at i:32914558 original size:40 final size:40
Alignment explanation
Indices: 32914514--32914871 Score: 270
Period size: 40 Copynumber: 8.9 Consensus size: 40
32914504 AGATGCATAA
* *
32914514 CAGGGGCACCAAAGTGCAATCAAGAGCA-TGAATGTGCGA-T
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAG-ATGTGC-ATT
* *
32914554 CAGGGGCGCCAAAGTGCAAACAAGGGCACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * *
32914594 TAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* *** * * *
32914634 CAGGGGTATTGAAGTACAAACAAGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * * *
32914674 CAAGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
32914714 CAGGGGTACCGAAGTACAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
32914754 CAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * * *
32914794 CAGGGGTACCGAAGTACAAATAGGGGAACAGATGTGCATT
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
* * * * * *
32914834 TAGGGGTACCGAAGTACAAACAAGGGCACTGATGTGCA
1 CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCA
32914872 AATAAGGGCA
Statistics
Matches: 282, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
39 1 0.00
40 280 0.99
41 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.16
Consensus pattern (40 bp):
CAGGGGCACCAAAGTGCAAACAAGAGCACAGATGTGCATT
Found at i:32914654 original size:80 final size:80
Alignment explanation
Indices: 32914565--32914871 Score: 425
Period size: 80 Copynumber: 3.8 Consensus size: 80
32914555 AGGGGCGCCA
* * * * * *
32914565 AAGTGCAAACAAGGGCACAGATGTGCATTTAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTGCAAACAGGGGCACAAATGTG
**
32914630 CATTCAGGGGTATTG
66 CATTCAGGGGTACCG
* *
32914645 AAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCGAAGTGCAAACAGGGGCACAAATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTGCAAACAGGGGCACAAATGTG
32914710 CATTCAGGGGTACCG
66 CATTCAGGGGTACCG
* *
32914725 AAGTACAAACAGGGGCACAAATGTGCATTCAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTGCAAACAGGGGCACAAATGTG
32914790 CATTCAGGGGTACCG
66 CATTCAGGGGTACCG
* * * * * * * **
32914805 AAGTACAAATAGGGGAACAGATGTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACTGATGTG
1 AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTGCAAACAGGGGCACAAATGTG
32914870 CA
66 CA
32914872 AATAAGGGCA
Statistics
Matches: 206, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 206 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.17
Consensus pattern (80 bp):
AAGTACAAACAAGGGCACAAATGTGCATTCAGGGGTACCGAAGTGCAAACAGGGGCACAAATGTG
CATTCAGGGGTACCG
Found at i:32914734 original size:120 final size:120
Alignment explanation
Indices: 32914565--32914871 Score: 461
Period size: 120 Copynumber: 2.6 Consensus size: 120
32914555 AGGGGCGCCA
* * * *
32914565 AAGTGCAAACAAGGGCACAGATGTGCATTTAGGGGCACCAAAGTGCAAACAGGGGCACAGATGTG
1 AAGTGCAAACAGGGGCACAGATGTGCATTTAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
* *
32914630 CATTCAGGGGTATTGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTATCG
66 CATTCAGGGGTATCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTACCG
* * *
32914685 AAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAAATGTG
1 AAGTGCAAACAGGGGCACAGATGTGCATTTAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
* * *
32914750 CATTCAGGGGTATCGAAGTGCAAACAGGGGCACAAATGTGCATTCAGGGGTACCG
66 CATTCAGGGGTATCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTACCG
* * * * *
32914805 AAGTACAAATAGGGGAACAGATGTGCATTTAGGGGTACCGAAGTACAAACAAGGGCACTGATGTG
1 AAGTGCAAACAGGGGCACAGATGTGCATTTAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
32914870 CA
66 CA
32914872 AATAAGGGCA
Statistics
Matches: 167, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 167 1.00
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.17
Consensus pattern (120 bp):
AAGTGCAAACAGGGGCACAGATGTGCATTTAGGGGTACCGAAGTACAAACAGGGGCACAGATGTG
CATTCAGGGGTATCGAAGTACAAACAAGGGCACAAATGTGCATTCAAGGGTACCG
Found at i:32919614 original size:38 final size:37
Alignment explanation
Indices: 32919539--32919619 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 37
32919529 AAGTATAAAA
* *
32919539 ATAAAATTAAACTTAAAATATTAAAATTAAAAGAAATT
1 ATAAAATTAAACTTAAAATA-TAAAACTAAAAAAAATT
32919577 ATAAAATTAGAA-TTAAAATA-AAAACTAAAACTAAAATT
1 ATAAAATTA-AACTTAAAATATAAAACTAAAA--AAAATT
32919615 A-AAAA
1 ATAAAA
32919620 GTGGCTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
36 9 0.24
37 4 0.11
38 23 0.61
39 2 0.05
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (37 bp):
ATAAAATTAAACTTAAAATATAAAACTAAAAAAAATT
Found at i:32919905 original size:25 final size:24
Alignment explanation
Indices: 32919863--32919910 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
32919853 TGGGTCATTC
32919863 TCCAAAATATTATCGTATGTAATT
1 TCCAAAATATTATCGTATGTAATT
* *
32919887 TCCAAAACTTTTATTGTATGTAAT
1 TCCAAAA-TATTATCGTATGTAAT
32919911 AGGCAATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (24 bp):
TCCAAAATATTATCGTATGTAATT
Found at i:32920428 original size:24 final size:24
Alignment explanation
Indices: 32920401--32920446 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32920391 TCAAAGAAAT
*
32920401 TTGAGTCGTATTTTGAGTTGTGTA
1 TTGAGTCGTATTTAGAGTTGTGTA
* *
32920425 TTGAGTTGTCTTTAGAGTTGTG
1 TTGAGTCGTATTTAGAGTTGTG
32920447 CTTGTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.04, G:0.30, T:0.50
Consensus pattern (24 bp):
TTGAGTCGTATTTAGAGTTGTGTA
Found at i:32924539 original size:34 final size:34
Alignment explanation
Indices: 32924475--32924635 Score: 168
Period size: 34 Copynumber: 4.7 Consensus size: 34
32924465 AGCATGACAT
* * *
32924475 TTGCTACTGAATTGAAT-TGATATAACCATATTAA
1 TTGCTACTGTATTG-ATCTGTTATAAGCATATTAA
* *
32924509 GTGCTACTGTATTGATCTGTCATAAGCATATTAA
1 TTGCTACTGTATTGATCTGTTATAAGCATATTAA
* *
32924543 TTAG-TACTGTATTGATCTATTATGAGCATATTAA
1 TT-GCTACTGTATTGATCTGTTATAAGCATATTAA
* *
32924577 TTGTTA-TCGTATTGATCTGTTATAAGAATATTAA
1 TTGCTACT-GTATTGATCTGTTATAAGCATATTAA
*
32924611 TTGCTACCT-TAATGATCTGTTATAA
1 TTGCTA-CTGTATTGATCTGTTATAA
32924636 ACATGTCATA
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
33 4 0.04
34 101 0.94
35 1 0.01
36 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.42
Consensus pattern (34 bp):
TTGCTACTGTATTGATCTGTTATAAGCATATTAA
Found at i:32924832 original size:44 final size:44
Alignment explanation
Indices: 32924746--32924870 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 44
32924736 TATCTGCAAA
* * * * * *
32924746 TTTGTTTTGTATCCACAGCCGGAGGTAGATTTTATTTGCGAGAT
1 TTTGTTGTCTATCCATAGCCAGAGGTAGATTTTATCTACGAGAT
* *
32924790 TTT-TCTGTCTATCCATAGCCAGAGGCAGATTCTATCTACGAGAT
1 TTTGT-TGTCTATCCATAGCCAGAGGTAGATTTTATCTACGAGAT
* **
32924834 TTTGTTGTGTATCCATAGTTAGAGGTAGATTTTATCT
1 TTTGTTGTCTATCCATAGCCAGAGGTAGATTTTATCT
32924871 GCAAGGTTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
43 1 0.02
44 64 0.97
45 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (44 bp):
TTTGTTGTCTATCCATAGCCAGAGGTAGATTTTATCTACGAGAT
Found at i:32932186 original size:116 final size:117
Alignment explanation
Indices: 32932030--32932265 Score: 393
Period size: 116 Copynumber: 2.0 Consensus size: 117
32932020 CACCTAATTC
* *
32932030 CATGCATAAAAATCAAGCCCATTATGTGCTTATCCACAACATAAACACCTAATTCAAACACCTAC
1 CATGCATAAAAACCAAGCCCATTATGTGCTTATCCACAACATAAACACCTAATTCAAACACCTAA
32932095 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
66 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
* * *
32932147 CATGCATAAAAACCAA-TCCATTGTGTGCTTATCCACAACATAAACACTTAATTCAAACACCTAA
1 CATGCATAAAAACCAAGCCCATTATGTGCTTATCCACAACATAAACACCTAATTCAAACACCTAA
* * *
32932211 CTAATCATACCGTATTTATCACTTTCAATCCATTACAAGCATACCATAACAA
66 CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
32932263 CAT
1 CAT
32932266 ACATTTCAAT
Statistics
Matches: 111, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
116 96 0.86
117 15 0.14
ACGTcount: A:0.41, C:0.28, G:0.06, T:0.26
Consensus pattern (117 bp):
CATGCATAAAAACCAAGCCCATTATGTGCTTATCCACAACATAAACACCTAATTCAAACACCTAA
CAAATCATACCGCATTTATCACTTTCAAGCCATTACAAGCATACCATAACAA
Found at i:32935331 original size:29 final size:29
Alignment explanation
Indices: 32935279--32935384 Score: 90
Period size: 29 Copynumber: 3.6 Consensus size: 29
32935269 CAATTTTCGT
** ** *
32935279 AAAAGGAAACCTTTGTGGCTATCTTTGTA
1 AAAAGGAAGTCTTTGTGGAAATCTATGTA
* *
32935308 AAAAGGATGTCTTTGTGGAAATCTATGTT
1 AAAAGGAAGTCTTTGTGGAAATCTATGTA
* *
32935337 TAAAGGAAGTCTTTATGGCAATATCTAT-TA
1 AAAAGGAAGTCTTTGTGG-AA-ATCTATGTA
32935367 AAAAGGAAG-CATTTGTGG
1 AAAAGGAAGTC-TTTGTGG
32935385 CGATTTCTGT
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
29 38 0.62
30 17 0.28
31 6 0.10
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (29 bp):
AAAAGGAAGTCTTTGTGGAAATCTATGTA
Found at i:32961993 original size:16 final size:16
Alignment explanation
Indices: 32961970--32962012 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
32961960 AAACAAAATT
32961970 AAAATAAAATTACATA
1 AAAATAAAATTACATA
* *
32961986 ATAAT-AAATTCCATA
1 AAAATAAAATTACATA
32962001 AAAATTAAAATT
1 AAAA-TAAAATT
32962013 TTTTGACCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 12 0.55
16 5 0.23
17 5 0.23
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATAAAATTACATA
Found at i:32970259 original size:18 final size:17
Alignment explanation
Indices: 32970236--32970271 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32970226 CAATAAAAAG
*
32970236 AACTAAAAATAAAACTAA
1 AACTAAAAAGAAAA-TAA
32970254 AACTAAAAAGAAAATAA
1 AACTAAAAAGAAAATAA
32970271 A
1 A
32970272 TAAACTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.75, C:0.08, G:0.03, T:0.14
Consensus pattern (17 bp):
AACTAAAAAGAAAATAA
Found at i:32977647 original size:18 final size:18
Alignment explanation
Indices: 32977621--32977655 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32977611 GGGAGAAGAG
32977621 GAGGCTGATGATGATGAC
1 GAGGCTGATGATGATGAC
*
32977639 GAGGGTGATGATGATGA
1 GAGGCTGATGATGATGA
32977656 TGATGAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.43, T:0.23
Consensus pattern (18 bp):
GAGGCTGATGATGATGAC
Found at i:32979445 original size:22 final size:22
Alignment explanation
Indices: 32979402--32979459 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
32979392 GTGGTTTACA
* *
32979402 GTTTAAGGGTT-GGGGTTTAAG
1 GTTTAAGTGTTAGGGGTTAAAG
32979423 GTTTAAGTGTTAGGGGTTAAAG
1 GTTTAAGTGTTAGGGGTTAAAG
32979445 GTTTATAGT-TTAGGG
1 GTTTA-AGTGTTAGGG
32979460 TTTAGGGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 10 0.30
22 20 0.61
23 3 0.09
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (22 bp):
GTTTAAGTGTTAGGGGTTAAAG
Found at i:32979455 original size:29 final size:29
Alignment explanation
Indices: 32979415--32979486 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
32979405 TAAGGGTTGG
*
32979415 GGTTTAAGGTTTA-AGTGTTAGGGGTTAAA
1 GGTTTAAGGTTTAGGGT-TTAGGGGTTAAA
*
32979444 GGTTTATA-GTTTAGGGTTTAGGGGTT-AG
1 GGTTTA-AGGTTTAGGGTTTAGGGGTTAAA
32979472 GGTTTAAGGTTTAGG
1 GGTTTAAGGTTTAGG
32979487 TGGTAGAGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 1 0.03
28 14 0.37
29 20 0.53
30 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (29 bp):
GGTTTAAGGTTTAGGGTTTAGGGGTTAAA
Found at i:32979476 original size:21 final size:21
Alignment explanation
Indices: 32979452--32979544 Score: 66
Period size: 21 Copynumber: 4.4 Consensus size: 21
32979442 AAGGTTTATA
32979452 GTTTAGGGTTTAGGGGTTAGG
1 GTTTAGGGTTTAGGGGTTAGG
*
32979473 GTTTAAGGTTTAGGTGG-TAGAG
1 GTTTAGGGTTTAGG-GGTTAG-G
* *
32979495 GTTAAGGG-AT-GGGGTTTAGG
1 GTTTAGGGTTTAGGGG-TTAGG
* ** * *
32979515 GGTTATTGTTTAGGGTTTAAG
1 GTTTAGGGTTTAGGGGTTAGG
32979536 GTTTAGGGT
1 GTTTAGGGT
32979545 CTTGGGTTTT
Statistics
Matches: 52, Mismatches: 14, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
19 2 0.04
20 7 0.13
21 31 0.60
22 12 0.23
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGTTAGG
Found at i:32979553 original size:14 final size:14
Alignment explanation
Indices: 32979238--32979544 Score: 92
Period size: 14 Copynumber: 21.9 Consensus size: 14
32979228 TCTATAATTC
**
32979238 AAGGTTTAGGGGAT
1 AAGGTTTAGGGTTT
32979252 ATAGG-TTAGGGGTTT
1 A-AGGTTTA-GGGTTT
* *
32979267 AAGGATTATGGTTT
1 AAGGTTTAGGGTTT
* *
32979281 AAGGGTTGGGGTTT
1 AAGGTTTAGGGTTT
*
32979295 AAGGTTTAGGTGTTG
1 AAGGTTTAGG-GTTT
*
32979310 AAGGTTAAGGG-TT
1 AAGGTTTAGGGTTT
* *
32979323 AGGGGTTTAGGTTTT
1 A-AGGTTTAGGGTTT
***
32979338 ATA-GTTTATAATTT
1 A-AGGTTTAGGGTTT
* * * *
32979352 ATGTTTTATGATTT
1 AAGGTTTAGGGTTT
*
32979366 AAGGTTTAGGG--G
1 AAGGTTTAGGGTTT
* * *
32979378 AGGGATTATGGTTT
1 AAGGTTTAGGGTTT
** **
32979392 GTGGTTTACAGTTT
1 AAGGTTTAGGGTTT
* *
32979406 AAGGGTTGGGGTTT
1 AAGGTTTAGGGTTT
*
32979420 AAGGTTTA-AGTGTT
1 AAGGTTTAGGGT-TT
* * *
32979434 AGGGGTTAAAGGTTT
1 A-AGGTTTAGGGTTT
32979449 ATA-GTTTAGGGTTT
1 A-AGGTTTAGGGTTT
* *
32979463 AGGGGTTAGGGTTT
1 AAGGTTTAGGGTTT
*
32979477 AAGGTTTA-GGTGGT
1 AAGGTTTAGGGT-TT
* *
32979491 AGAGGTTAAGGG-AT
1 A-AGGTTTAGGGTTT
** *
32979505 GGGGTTTAGGGGTT
1 AAGGTTTAGGGTTT
**
32979519 ATTGTTTAGGGTTT
1 AAGGTTTAGGGTTT
32979533 AAGGTTTAGGGT
1 AAGGTTTAGGGT
32979545 CTTGGGTTTT
Statistics
Matches: 207, Mismatches: 69, Indels: 34
0.67 0.22 0.11
Matches are distributed among these distances:
12 8 0.04
13 15 0.07
14 140 0.68
15 40 0.19
16 4 0.02
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
AAGGTTTAGGGTTT
Done.