Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 115 of 213
Found at i:32980459 original size:31 final size:32
Alignment explanation
Indices: 32980398--32980460 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
32980388 TCTTTTCCCC
*
32980398 TTATTTTATGCCTTTTGGTTCAATTCTTCCCTA
1 TTATTTTATGCCTTTTAGTT-AATTCTTCCCTA
* *
32980431 TTATTTTCTGCCTTTTAGTT-TTTCTTCCCT
1 TTATTTTATGCCTTTTAGTTAATTCTTCCCT
32980461 TGATTAGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 9 0.33
33 18 0.67
ACGTcount: A:0.11, C:0.22, G:0.08, T:0.59
Consensus pattern (32 bp):
TTATTTTATGCCTTTTAGTTAATTCTTCCCTA
Found at i:32981938 original size:28 final size:28
Alignment explanation
Indices: 32981907--32982072 Score: 133
Period size: 29 Copynumber: 5.6 Consensus size: 28
32981897 GGTTTAATGC
32981907 GAATAAATTATCAATTTTTGATTTAATT
1 GAATAAATTATCAATTTTTGATTTAATT
* *
32981935 GAATAAATTATGTTTGATTAGTTTATTCGGTTTAATGT
1 GAATAAATTA----TCA--A-TTT-TT-GATTTAAT-T
32981973 GAATAAATTATCAATTTTTGATTTAATT
1 GAATAAATTATCAATTTTTGATTTAATT
* *
32982001 GAATAAA-T-T--ATGTTTGATTTTAAGT
1 GAATAAATTATCAATTTTTGA-TTTAATT
*
32982026 GAATAAATTATCAATTTTTTATTTTAATT
1 GAATAAATTATCAATTTTTGA-TTTAATT
* *
32982055 TAATAAATTATCGATTTT
1 GAATAAATTATCAATTTT
32982073 ATATTTGATT
Statistics
Matches: 112, Mismatches: 11, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
24 7 0.06
25 13 0.12
26 2 0.02
27 2 0.02
28 18 0.16
29 36 0.32
30 2 0.02
31 3 0.03
32 3 0.03
34 3 0.03
35 3 0.03
36 2 0.02
37 7 0.06
38 11 0.10
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (28 bp):
GAATAAATTATCAATTTTTGATTTAATT
Found at i:32981941 original size:66 final size:66
Alignment explanation
Indices: 32981858--32982019 Score: 299
Period size: 66 Copynumber: 2.5 Consensus size: 66
32981848 ATTTTATATA
*
32981858 TTTGA-TTAATTGGATAAATTATGTTTGATTAGTTTATTCGGTTTAATGCGAATAAATTATCAAT
1 TTTGATTTAATTGAATAAATTATGTTTGATTAGTTTATTCGGTTTAATGCGAATAAATTATCAAT
32981922 T
66 T
*
32981923 TTTGATTTAATTGAATAAATTATGTTTGATTAGTTTATTCGGTTTAATGTGAATAAATTATCAAT
1 TTTGATTTAATTGAATAAATTATGTTTGATTAGTTTATTCGGTTTAATGCGAATAAATTATCAAT
32981988 T
66 T
32981989 TTTGATTTAATTGAATAAATTATGTTTGATT
1 TTTGATTTAATTGAATAAATTATGTTTGATT
32982020 TTAAGTGAAT
Statistics
Matches: 94, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
65 5 0.05
66 89 0.95
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (66 bp):
TTTGATTTAATTGAATAAATTATGTTTGATTAGTTTATTCGGTTTAATGCGAATAAATTATCAAT
T
Found at i:32982016 original size:24 final size:25
Alignment explanation
Indices: 32981989--32982036 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32981979 ATTATCAATT
*
32981989 TTTGA-TTTAATTGAATAAATTATG
1 TTTGATTTTAAGTGAATAAATTATG
32982013 TTTGATTTTAAGTGAATAAATTAT
1 TTTGATTTTAAGTGAATAAATTAT
32982037 CAATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (25 bp):
TTTGATTTTAAGTGAATAAATTATG
Found at i:32986072 original size:44 final size:43
Alignment explanation
Indices: 32985997--32986164 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
32985987 ACTTTTAGGC
*
32985997 GCATTTGTGA-ATAAAGCG-TCGCTAAAGGTCATGTTATTTAGCA
1 GCATTTGTGATA-AAAGCGCT-GCTAAAGGTCATGTTCTTTAGCA
*
32986040 GCATTTGTGATAAAAAGCGCTGCCAAAGGTCATGTTCTTTAGCA
1 GCATTTGTGAT-AAAAGCGCTGCTAAAGGTCATGTTCTTTAGCA
** * * * * *
32986084 GCGGTTGTTATTAAAGTGCCGCTAAAGGTCATGTTCTTTAGCG
1 GCATTTGTGATAAAAGCGCTGCTAAAGGTCATGTTCTTTAGCA
* * *
32986127 GCAATTGTGATAAAAGCGCTACTAAAAGTCATGTTCTT
1 GCATTTGTGATAAAAGCGCTGCTAAAGGTCATGTTCTT
32986165 GAGCGTCGTT
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
43 67 0.64
44 35 0.34
45 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
GCATTTGTGATAAAAGCGCTGCTAAAGGTCATGTTCTTTAGCA
Found at i:32986183 original size:43 final size:41
Alignment explanation
Indices: 32986009--32986193 Score: 149
Period size: 43 Copynumber: 4.3 Consensus size: 41
32985999 ATTTGTGAAT
*
32986009 AAAGCG-TCGCTAAAGGTCATGTTATTTAGCAGC-ATTTGTGATAA
1 AAAGCGCT-GCTAAAGGTCATGTTCTTTAGC-GCGA-TTGT-AT-A
* * *
32986053 AAAGCGCTGCCAAAGGTCATGTTCTTTAGCAGCGGTTGTTATT
1 AAAGCGCTGCTAAAGGTCATGTTCTTTAGC-GCGATTG-TATA
* * *
32986096 AAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCAATTGTGATA
1 AAAGCGCTGCTAAAGGTCATGTTCTTTAGC-GCGATTGT-ATA
* * * *
32986139 AAAGCGCTACTAAAAGTCATGTTCTTGAGCGTCGTTTGCTATA
1 AAAGCGCTGCTAAAGGTCATGTTCTTTAGCG-CGATTG-TATA
*
32986182 AAAGCGCCGCTA
1 AAAGCGCTGCTA
32986194 TGAGTTTAGA
Statistics
Matches: 115, Mismatches: 20, Indels: 13
0.78 0.14 0.09
Matches are distributed among these distances:
42 2 0.02
43 76 0.66
44 35 0.30
45 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (41 bp):
AAAGCGCTGCTAAAGGTCATGTTCTTTAGCGCGATTGTATA
Found at i:32999064 original size:45 final size:45
Alignment explanation
Indices: 32998988--32999130 Score: 128
Period size: 45 Copynumber: 3.2 Consensus size: 45
32998978 ATGTTATTGT
* * * *
32998988 AAACAAGATTAAAACGAGTAACATCAAAGCTGAAAAACGA-TAT-G
1 AAACATGAGTAAAACGAGTAAGACCAAAGCTGAAAAAC-ATTATGG
* *
32999032 ACAATATGAGTAAAACGAGTAAGACCATAGCTGAAAAACATTATGG
1 A-AACATGAGTAAAACGAGTAAGACCAAAGCTGAAAAACATTATGG
* * * * * * *
32999078 AAACATGATTAAAACAAGTAAGACTACAGTTGAAAGACGTTATGG
1 AAACATGAGTAAAACGAGTAAGACCAAAGCTGAAAAACATTATGG
*
32999123 CAACATGA
1 AAACATGA
32999131 ATTAAAATAA
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
44 2 0.02
45 77 0.95
46 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.19
Consensus pattern (45 bp):
AAACATGAGTAAAACGAGTAAGACCAAAGCTGAAAAACATTATGG
Found at i:32999149 original size:46 final size:45
Alignment explanation
Indices: 32999037--32999160 Score: 158
Period size: 45 Copynumber: 2.7 Consensus size: 45
32999027 ATATGACAAT
* * * * *
32999037 ATGAGTAAAACGAGTAAGACCATAGCTGAAAAACATTATGGAAAC
1 ATGATTAAAACAAGTAAGACTATAGTTGAAAGACATTATGGAAAC
* * *
32999082 ATGATTAAAACAAGTAAGACTACAGTTGAAAGACGTTATGGCAAC
1 ATGATTAAAACAAGTAAGACTATAGTTGAAAGACATTATGGAAAC
*
32999127 ATGAATTAAAATAAGTAAGACTATAGTTGAAAGA
1 ATG-ATTAAAACAAGTAAGACTATAGTTGAAAGA
32999161 TGCTAAGGCA
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 40 0.59
46 28 0.41
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (45 bp):
ATGATTAAAACAAGTAAGACTATAGTTGAAAGACATTATGGAAAC
Found at i:32999176 original size:46 final size:46
Alignment explanation
Indices: 32999079--32999176 Score: 135
Period size: 46 Copynumber: 2.2 Consensus size: 46
32999069 ACATTATGGA
* *
32999079 AACATG-ATTAAAACAAGTAAGACTACAGTTGAAAGACGTTATGGC
1 AACATGAATTAAAACAAGTAAGACTACAGTTGAAAGACGCTAAGGC
* * *
32999124 AACATGAATTAAAATAAGTAAGACTATAGTTGAAAGATGCTAAGGC
1 AACATGAATTAAAACAAGTAAGACTACAGTTGAAAGACGCTAAGGC
*
32999170 ATCATGA
1 AACATGA
32999177 CGAAATTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 6 0.13
46 40 0.87
ACGTcount: A:0.46, C:0.11, G:0.19, T:0.23
Consensus pattern (46 bp):
AACATGAATTAAAACAAGTAAGACTACAGTTGAAAGACGCTAAGGC
Found at i:33005817 original size:45 final size:46
Alignment explanation
Indices: 33005736--33006053 Score: 328
Period size: 45 Copynumber: 7.0 Consensus size: 46
33005726 TGTTATCATA
* * *
33005736 AACATG-ATTAAAATGGGTAAGACTATAGCTGAAAGACACTATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* * * * *
33005781 AATATG-GTTAAAACGAGTAAGACCATAGTTGGAAGACGCTATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* *
33005826 AACATG-ATTAAAATGAGTAAGACCATAGCTAAAAGACGTTATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* *
33005871 AACAAGAATTAAAATGAGTAAGACCATAGCTGAAAGACGTTATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* *
33005917 AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGATGCTATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* *** * * * * *
33005963 ATCAT-AAAGGAAGTTAGTAAGACCATGGTTGAAAGACGCAATGGC
1 AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
* *
33006008 ATCATTGTAATTAGAACT-A-T--GACCATAGCTGAAAGACGCTATGGC
1 AACA-TG-AATTA-AAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
33006053 A
1 A
33006054 TCCTTTGACA
Statistics
Matches: 229, Mismatches: 39, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
45 137 0.60
46 85 0.37
47 1 0.00
48 3 0.01
49 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (46 bp):
AACATGAATTAAAATGAGTAAGACCATAGCTGAAAGACGCTATGGC
Found at i:33005982 original size:91 final size:92
Alignment explanation
Indices: 33005736--33006055 Score: 318
Period size: 91 Copynumber: 3.5 Consensus size: 92
33005726 TGTTATCATA
* * * * * * * *
33005736 AACATG-ATTAAAATGGGTAAGACTATAGCTGAAAGACACTATGGCAAT-ATG-GTTAAAACGAG
1 AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGACGCTATGGC-ATCAAGAATGAAAATGAG
*
33005798 TAAGACCATAGTTGGAAGACGCTATGGC
65 TAAGACCATAGTTGAAAGACGCTATGGC
* * *
33005826 AACATG-ATTAAAATGAGTAAGACCATAGCTAAAAGACGTTATGGCAACAAGAATTAAAATGAGT
1 AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGACGCTATGGCATCAAGAATGAAAATGAGT
* *
33005890 AAGACCATAGCTGAAAGACGTTATGGC
66 AAGACCATAGTTGAAAGACGCTATGGC
* * * *
33005917 AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGATGCTATGGCATCATA-AA-GGAAGTTAG
1 AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGACGCTATGGCATCA-AGAATGAAAATGAG
* *
33005980 TAAGACCATGGTTGAAAGACGCAATGGC
65 TAAGACCATAGTTGAAAGACGCTATGGC
* * *
33006008 ATCATTGTAATTAGAACT-A-T--GACCATAGCTGAAAGACGCTATGGCATC
1 AACA-TG-AATTA-AAATGAGTAAGACCATAGCTAAAAGACGCTATGGCATC
33006056 CTTTGACAGT
Statistics
Matches: 196, Mismatches: 27, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
89 1 0.01
90 68 0.35
91 72 0.37
92 45 0.23
93 7 0.04
94 3 0.02
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (92 bp):
AACATGAATTAAAATGAGTAAGACCATAGCTAAAAGACGCTATGGCATCAAGAATGAAAATGAGT
AAGACCATAGTTGAAAGACGCTATGGC
Found at i:33006054 original size:45 final size:43
Alignment explanation
Indices: 33005801--33006055 Score: 135
Period size: 46 Copynumber: 5.7 Consensus size: 43
33005791 AAACGAGTAA
* * * *
33005801 GACCATAGTTGGAAGACGCTATGGCAACA-TG-ATTAAAATGAGT
1 GACCATAGCTGAAAGACGCTATGGCATCATTGAATTAGAAT-A-T
* * * * *
33005844 AAGACCATAGCTAAAAGACGTTATGGCAACA-AGAATTAAAATGAGT
1 --GACCATAGCTGAAAGACGCTATGGCATCATTGAATTAGAAT-A-T
* * *
33005890 AAGACCATAGCTGAAAGACGTTATGGCAACA-TGAATTAAAATGAGT
1 --GACCATAGCTGAAAGACGCTATGGCATCATTGAATTAGAAT-A-T
* * * *
33005936 AAGACCATAGCTAAAAGATGCTATGGCATCATAAAGGAAGTTAG--TAA
1 --GACCATAGCTGAAAGACGCTATGGCATCAT---TGAA-TTAGAATAT
* * *
33005983 GACCATGGTTGAAAGACGCAATGGCATCATTGTAATTAGAACTAT
1 GACCATAGCTGAAAGACGCTATGGCATCATTG-AATTAGAA-TAT
33006028 GACCATAGCTGAAAGACGCTATGGCATC
1 GACCATAGCTGAAAGACGCTATGGCATC
33006056 CTTTGACAGT
Statistics
Matches: 176, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
42 5 0.03
43 2 0.01
45 78 0.44
46 83 0.47
48 1 0.01
49 1 0.01
50 3 0.02
51 3 0.02
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (43 bp):
GACCATAGCTGAAAGACGCTATGGCATCATTGAATTAGAATAT
Found at i:33008738 original size:25 final size:24
Alignment explanation
Indices: 33008697--33008752 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
33008687 ATTAATTTAG
* *
33008697 ACATTTTTATTTTATTTTATTTTT
1 ACATTTTTATTTTATTTAATCTTT
* *
33008721 ATATTTTTGTTTTAATTTAATCTTT
1 ACATTTTTATTTT-ATTTAATCTTT
33008746 ACATTTT
1 ACATTTT
33008753 ACTTTTTCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (24 bp):
ACATTTTTATTTTATTTAATCTTT
Found at i:33013351 original size:67 final size:64
Alignment explanation
Indices: 33013279--33013409 Score: 165
Period size: 65 Copynumber: 2.0 Consensus size: 64
33013269 ATTTTTCATT
* *
33013279 TTTCA-TTGTAGAAATAATATTTATCTAATACATTTTAATTTTTAAAAAATAATGTTTTAAATAA
1 TTTCATTTGTAGAAATAATA--TATATAATACATTTTAA-TTTT-AAAAATAAAGTTTTAAATAA
33013343 TGA
62 TGA
* * *
33013346 TTTCATTTTTTAGAAATAATATATATAATACTTTTTAATTTTAAAAGTAAAGTTTTAAATAATG
1 TTTCA-TTTGTAGAAATAATATATATAATACATTTTAATTTTAAAAATAAAGTTTTAAATAATG
33013410 TAAAAGCATA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
65 20 0.35
66 4 0.07
67 20 0.35
69 13 0.23
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (64 bp):
TTTCATTTGTAGAAATAATATATATAATACATTTTAATTTTAAAAATAAAGTTTTAAATAATGA
Found at i:33016841 original size:21 final size:21
Alignment explanation
Indices: 33016817--33016888 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
33016807 CTATAGCATC
33016817 TTTTAGCTATGGTCTTACTCA
1 TTTTAGCTATGGTCTTACTCA
** * *
33016838 TTTTAATTCATGTTGCCATAACGTC-
1 TTTTAGCT-ATG--GTC-TTAC-TCA
33016863 TTTTAGCTATGGTCTTACTCA
1 TTTTAGCTATGGTCTTACTCA
33016884 TTTTA
1 TTTTA
33016889 ATTCATGTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 2 0.05
21 14 0.38
22 5 0.14
24 5 0.14
25 9 0.24
26 2 0.05
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (21 bp):
TTTTAGCTATGGTCTTACTCA
Found at i:33016933 original size:45 final size:45
Alignment explanation
Indices: 33016815--33017031 Score: 319
Period size: 45 Copynumber: 4.8 Consensus size: 45
33016805 TGCTATAGCA
*
33016815 TCTTTTAGCTATGGTCTTACTCATTTTAATTCATGTTGCCATAACG
1 TCTTTCAGCTATGGTCTTACTCATTTTAA-TCATGTTGCCATAACG
* *
33016861 TCTTTTAGCTATGGTCTTACTCATTTTAATTCATGTTGCCATAACA
1 TCTTTCAGCTATGGTCTTACTCATTTTAA-TCATGTTGCCATAACG
* *
33016907 T-TTTCAACTATGGTCTTACTCATTTTAATCATGTTGCCATAGCG
1 TCTTTCAGCTATGGTCTTACTCATTTTAATCATGTTGCCATAACG
* * **
33016951 TCTTCCAGCTATGGTCTTACTCATTTTAATCATATTGCCATAGTG
1 TCTTTCAGCTATGGTCTTACTCATTTTAATCATGTTGCCATAACG
*
33016996 TCTTTCAGCTATGGTCTTACCCATTTTAATCATGTT
1 TCTTTCAGCTATGGTCTTACTCATTTTAATCATGTT
33017032 TACGATAACA
Statistics
Matches: 158, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
44 15 0.09
45 97 0.61
46 46 0.29
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.45
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCATTTTAATCATGTTGCCATAACG
Found at i:33026020 original size:11 final size:10
Alignment explanation
Indices: 33026000--33026027 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
33025990 CATTTTCCCA
33026000 TTTTTCTTTT
1 TTTTTCTTTT
33026010 TTTTTCTTTT
1 TTTTTCTTTT
33026020 TTTTTCTT
1 TTTTTCTT
33026028 GTTACCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:33026774 original size:44 final size:45
Alignment explanation
Indices: 33026715--33026802 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 45
33026705 GAAGTATGAT
* *
33026715 TTGCTATTCTCAGTCTGCCCCACTGCTA-CTTCAGGGGGATAAGAC
1 TTGCTATTCTCAGTCTGCCCCACTGCAACCTT-AGGGAGATAAGAC
* *
33026760 TTGCT-TTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGA
1 TTGCTATTCTCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGA
33026803 TCTGATGCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 30 0.79
45 8 0.21
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (45 bp):
TTGCTATTCTCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGAC
Found at i:33027089 original size:44 final size:44
Alignment explanation
Indices: 33027040--33027707 Score: 196
Period size: 44 Copynumber: 15.2 Consensus size: 44
33027030 TACCTGGGGA
* *
33027040 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
33027084 AGATAAGA-TCTGTTA-TTTTCAACCTACTCCACTATTGCTTAGGG
1 AGATAAGATTC-G-TAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
33027128 AGATAGGACTAGT-GACTTAAATCTGCTTCC-CTACTACCT-GGG
1 AGATAAGATTCGTAGTCTTCAATCTGC-TCCACTACTGCTTAGGG
*** ** *
33027170 AAAGATAAGATTCACCGTCTTCAATCTGCTTAACTACTGCATAGGG
1 --AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * *
33027216 AGATAAGA-TCTGTAATATTTAACCTACTCCAC-ACTGCTTAGGG
1 AGATAAGATTC-GTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
33027259 AGATAAGACTTAC--AATCTTCAACCTATTCCACTGCTG-TCCAAGG
1 AGATAAGA-TT-CGTAGTCTTCAATCTGCTCCACTACTGCT-TAGGG
* * ** * * * * *
33027303 AGATAGGACTAAT-GGCTTAAATCTGTTTCC-CTACTAG-ATGGGG
1 AGATAAGATTCGTAGTCTTCAATCTG-CTCCACTACT-GCTTAGGG
** * *
33027346 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGA
1 -AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * *
33027391 AGATAAGA-TCTGTAATCTTCAACCTATTCTACTGCTG-TCTAGGG
1 AGATAAGATTC-GTAGTCTTCAATCTGCTCCACTACTGCT-TAGGG
* * * * * * * * * *
33027435 AAATAGGACTAGT-GACTTAAATTTGCTTCC-CTACTACCTGGGG
1 AGATAAGATTCGTAGTCTTCAATCTGC-TCCACTACTGCTTAGGG
** *
33027478 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 -AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * *
33027523 AGATAAGA-TCTGTAATTTTCAACCTACTCCA-TCACTGCTTAGGG
1 AGATAAGATTC-GTAGTCTTCAATCTGCTCCACT-ACTGCTTAGGG
* * * ** *
33027567 AGATAAGGCTTAC--AATCTTCAACCTATTCCACTGCTG-TCTAGGG
1 AGATAA-GATT-CGTAGTCTTCAATCTGCTCCACTACTGCT-TAGGG
* * * * * * * *
33027611 AGATAGGACTAGT-GGCTTAAATCTGCTTCC-CTACTACCTGAGGA
1 AGATAAGATTCGTAGTCTTCAATCTGC-TCCACTACT-GCTTAGGG
* * * *
33027655 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTTGGG
1 AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
33027699 AGATAAGAT
1 AGATAAGAT
33027708 CTGTAATTTT
Statistics
Matches: 437, Mismatches: 141, Indels: 92
0.65 0.21 0.14
Matches are distributed among these distances:
42 3 0.01
43 101 0.23
44 251 0.57
45 76 0.17
46 5 0.01
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
AGATAAGATTCGTAGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:33027175 original size:132 final size:131
Alignment explanation
Indices: 33026994--33027268 Score: 408
Period size: 132 Copynumber: 2.1 Consensus size: 131
33026984 TGCTGTCCAA
* * * **
33026994 GGAGATAGGACCAGTGGCTTAAATCTACTTCCCTACTACCTGGGGAAGATAAGATTCGTCGTCTT
1 GGAGATAGGACTAGTGACTTAAATCTACTTCCCTACTACCTGGGAAAGATAAGATTCACCGTCTT
* * * * *
33027059 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTTAT-TTTCAACCTACTCCACTATTGCT
66 CAATCTGCTCAACTACTGCATAGGGAGATAAGATCTGTAATATTT-AACCTACTCCAC-ACTGCT
33027123 TAG
129 TAG
*
33027126 GGAGATAGGACTAGTGACTTAAATCTGCTTCCCTACTACCTGGGAAAGATAAGATTCACCGTCTT
1 GGAGATAGGACTAGTGACTTAAATCTACTTCCCTACTACCTGGGAAAGATAAGATTCACCGTCTT
*
33027191 CAATCTGCTTAACTACTGCATAGGGAGATAAGATCTGTAATATTTAACCTACTCCACACTGCTTA
66 CAATCTGCTCAACTACTGCATAGGGAGATAAGATCTGTAATATTTAACCTACTCCACACTGCTTA
33027256 G
131 G
*
33027257 GGAGATAAGACT
1 GGAGATAGGACT
33027269 TACAATCTTC
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
131 19 0.15
132 107 0.83
133 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (131 bp):
GGAGATAGGACTAGTGACTTAAATCTACTTCCCTACTACCTGGGAAAGATAAGATTCACCGTCTT
CAATCTGCTCAACTACTGCATAGGGAGATAAGATCTGTAATATTTAACCTACTCCACACTGCTTA
G
Found at i:33027307 original size:175 final size:176
Alignment explanation
Indices: 33027066--33027416 Score: 458
Period size: 175 Copynumber: 2.0 Consensus size: 176
33027056 CTTCGATCTG
* * * * *
33027066 CTCCACTACTGCTTAGGGAGATAAGATCTGTTATTTTCAACCTACTCCACTATTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTGCTCAAGGAGA
* *
33027131 TAGGACTAGTGACTTAAATCTGCTTCCCTACTACCTGGGAAAGATAAGATTCACCGTCTTCAATC
66 TAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGAAAGATAAGATTCACCGTCTTCAATC
* * *
33027196 TGCTTAACTACTGCATAGGGAGATAAGATCTGTAATATTTAACCTA
131 TGCTCAACTACTGCATAGGAAGATAAGATCTGTAATATTCAACCTA
* *
33027242 CTCCAC-ACTGCTTAGGGAGATAAGA-CT-TACAATCTTCAACCTATTCCACTGCTG-TCCAAGG
1 CTCCACTACTGCTTAGGGAGATAAGATCTGT--AATCTTCAACCTACTCCACTACTGCT-CAAGG
* * * * * *
33027303 AGATAGGACTAATGGCTTAAATCTGTTTCCCTACTAGATGGGGAAGATAAGATTCGCCGTCTTCG
63 AGATAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGAAAGATAAGATTCACCGTCTTCA
* * *
33027368 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA
128 ATCTGCTCAACTACTGCATAGGAAGATAAGATCTGTAATATTCAACCTA
33027417 TTCTACTGCT
Statistics
Matches: 151, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
173 1 0.01
174 3 0.02
175 141 0.93
176 6 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (176 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTACTCCACTACTGCTCAAGGAGA
TAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGAAAGATAAGATTCACCGTCTTCAATC
TGCTCAACTACTGCATAGGAAGATAAGATCTGTAATATTCAACCTA
Found at i:33027408 original size:132 final size:132
Alignment explanation
Indices: 33027242--33027553 Score: 468
Period size: 132 Copynumber: 2.4 Consensus size: 132
33027232 ATTTAACCTA
33027242 CTCCAC-ACTGCTTAGGGAGATAAGA-CT-TACAATCTTCAACCTATTCCACTGCTGTCCAAGGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTGCTGTCCAAGGA
* * * *
33027304 GATAGGACTAATGGCTTAAATCTGTTTCCCTACTAGATGGGGAAGATAAGATTCGCCGTCTTCGA
64 AATAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGGAAGATAAGATTCGCCGTCTTCGA
33027369 TCTG
129 TCTG
* * * *
33027373 CTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTATTCTACTGCTGTCTAGGGAAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTGCTGTCCAAGGAAA
* * *
33027438 TAGGACTAGTGACTTAAATTTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATC
66 TAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGGAAGATAAGATTCGCCGTCTTCGATC
33027503 TG
131 TG
* *
33027505 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCA
33027554 TCACTGCTTA
Statistics
Matches: 163, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
131 6 0.04
132 154 0.94
133 2 0.01
134 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTGCTGTCCAAGGAAA
TAGGACTAATGACTTAAATCTGCTTCCCTACTACATGGGGAAGATAAGATTCGCCGTCTTCGATC
TG
Found at i:33027443 original size:307 final size:306
Alignment explanation
Indices: 33026880--33028365 Score: 1551
Period size: 307 Copynumber: 4.8 Consensus size: 306
33026870 AGATTCGTCA
* * *
33026880 TCTTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATTGTAATTTTCAACCTACTCCACTACTG
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTGTAATTTTCAACCTACTCCACTACTG
* * *
33026945 CTTAGGGAGATAAGGCTTACAATCTTCAACCTATTACACTGCTGTCCAAGGAGATAGGACCAGTG
66 CTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACTAGTG
* * *
33027010 GCTTAAATCTACTTCCCTACTACCTGGGGAAGATAAGATTCGTCGTCTTCGATCTGCTCCACTAC
131 GCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTAC
* * ** * *
33027075 TGCTTAGGGAGATAAGATCTGTTATTTTCAACCTACTCCACTATTG-CTTAGGGAGATAGGACTA
196 TGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTC-CAGGGAGATAAGACTA
33027139 GTGACTTAAATCTGCTTCCCTACTACCTGGGAAAGATAAGATTCACCG
260 GTGACTTAAATCTGCTTCCCTACTACCTGGG-AAGATAAGATTCACCG
** *
33027187 TCTTCAATCTGCTTAACTACTGCATAGGGAGATAAGATCTGTAATATTT-AACCTACTCCAC-AC
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TGTAAT-TTTCAACCTACTCCACTAC
*
33027250 TGCTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACTAA
64 TGCTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACTAG
* ** *
33027315 TGGCTTAAATCTGTTTCCCTACTAGATGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
129 TGGCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
* * * * * *
33027380 ACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTATTCTACTGCTGTCTAGGGAAATAGGACT
194 ACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTCCAGGGAGATAAGACT
* *
33027445 AGTGACTTAAATTTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCG
259 AGTGACTTAAATCTGCTTCCCTACTACCT-GGGAAGATAAGATTCACCG
*
33027494 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCA-TCAC
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-TGTAATTTTCAACCTACTCCACT-AC
* * *
33027558 TGCTTAGGGAGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAG
64 TGCTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACTAG
* *
33027623 TGGCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACT
129 TGGCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
* *
33027688 ACTGCTTTGGGAGATAAGATCTGTAATTTTCGACCTATTCCACTGCTGTCCAGGGAGATAAGACT
194 ACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTCCAGGGAGATAAGACT
* ** * * * * * * * **
33027753 -GTTATCTTCTACCT-ATTCCACTGCTGCCCAGGG-AGATAGGACT-AGTG
259 AGTGA-CTTAAATCTGCTTCC-CTACT-ACCTGGGAAGATAAGATTCACCG
* * * * * * ** * ** * *
33027800 GCTTTAATCTACTTCC-CTACTACCTGGGGAAGATAAGATTCGCCATCTTCAATATGCTTCACTA
1 TCTTCAATCTGC-TCCACTACTGCTTAGGG-AGATAAGATT-GTAATTTTCAACCTACTCCACTA
* * * * *
33027864 CTGCTTAGGGAGATAAGA-TCTGCAATTTTCGACCTATTTCACTGCTGTCCAGGGAGATAGGACT
63 CTGCTTAGGGAGATAAGACT-TACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACT
* * * * * *
33027928 AGTGGCTTAAATCTGCTTCCGTATTACCT-AGGAAGATAAGATTCACCATTTTTGATCTGCTCCA
127 AGTGGCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCA
* * *
33027992 CTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTATTCCACAGCTGTCCAGGGAGATAAGA
192 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTCCAGGGAGATAAGA
* * * * * * * * * **
33028057 CTGGT-ATCTTCAACCT-ATTCCACTGCTGTCCAGGG-AGATAGGACT-AGTGG
257 CTAGTGA-CTTAAATCTGCTTCC-CTACT-ACCTGGGAAGATAAGATTCA-CCG
* * * * * * * *
33028107 T-TTAAATCTGCTTCC-CTACTACTTGGGGAAGATAAGATT-CACTATCTTCGATCTGCTCCACT
1 TCTTCAATCTGC-TCCACTACTGCTTAGGG-AGATAAGATTGTA--ATTTTCAACCTACTCCACT
* * ** *
33028169 ACTACTTAGGGAGATAAGATCTGT--AATTTTTGACCTATTCCACT-ATCGTCC-AGGCAGATAG
62 ACTGCTTAGGGAGATAAGA-CT-TACAATCTTCAACCTATTCCACTGCT-GTCCAAGG-AGATAG
* * * * *
33028230 GACTAGTGGCTTAAATCAGCTTCCCTACTACCTTG-GGAAGATAAGATTTGTCGTATTTGATCTG
123 GACTAGTGGCTTAAATCTGCTTCCCTACTACC-TGAGGAAGATAAGATTCGCCGTCTTCGATCTG
* * * * *
33028294 CTCCACTATTACTTAGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGA
187 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTCCAGGGAGA
*
33028359 TAGGACT
252 TAAGACT
33028366 GGTATCTTCG
Statistics
Matches: 1029, Mismatches: 125, Indels: 50
0.85 0.10 0.04
Matches are distributed among these distances:
304 1 0.00
305 3 0.00
306 282 0.27
307 522 0.51
308 216 0.21
309 5 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (306 bp):
TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATTGTAATTTTCAACCTACTCCACTACTG
CTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGTCCAAGGAGATAGGACTAGTG
GCTTAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTAC
TGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGTCCAGGGAGATAAGACTAG
TGACTTAAATCTGCTTCCCTACTACCTGGGAAGATAAGATTCACCG
Found at i:33027498 original size:88 final size:87
Alignment explanation
Indices: 33027388--33027851 Score: 244
Period size: 88 Copynumber: 5.3 Consensus size: 87
33027378 CTACTGCTTA
*** * *
33027388 GGAAGATAAGATCTGTAATCTTCAACCTATTCTACTGCTGTCTAGGGAAATAGGACTAGTGACTT
1 GGAAGATAAGAT-TGCCGTCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGACTT
*
33027453 AAATTTGCTTCCCTACTACCTGG
65 AAATCTGCTTCCCTACTACCTGG
* * ** * * *
33027476 GGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG-CTTAGGGAGATAAGATCT-GTAAT
1 GGAAGATAAGATT-GCCGTCTTCAACCTATTCCACTGCTGTC-TAGGGAGATAGGA-CTAGTGA-
* * * * * * * *
33027539 TTTCAACCTAC-TCCATCACTGCTTAG
62 CTTAAATCTGCTTCCCT-ACTACCTGG
* * ** *
33027565 GG-AGATAAGGCTTACAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTT
1 GGAAGATAA-GATTGCCGTCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGACTT
*
33027629 AAATCTGCTTCCCTACTACCTGA
65 AAATCTGCTTCCCTACTACCTGG
* * * ** * * * *
33027652 GGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTG-CTTTGGGAGATAAGATCT-GTAAT
1 GGAAGATAAGA-TTGCCGTCTTCAACCTATTCCACTGCTGTC-TAGGGAGATAGGA-CTAGTGA-
* ** * * * * *
33027715 TTTCGACCT-ATTCCACTGCTGTCC-AG
62 CTTAAATCTGCTTCC-CTACT-ACCTGG
* *** * * * * *
33027741 GG-AGATAAGACTGTTATCTTCTACCTATTCCACTGCTGCCCAGGGAGATAGGACTAGTGGCTTT
1 GGAAGATAAGATTGCCGTCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGACTTA
*
33027805 AATCTACTTCCCTACTACCTGG
66 AATCTGCTTCCCTACTACCTGG
*
33027827 GGAAGATAAGATTCGCCATCTTCAA
1 GGAAGATAAGATT-GCCGTCTTCAA
33027852 TATGCTTCAC
Statistics
Matches: 264, Mismatches: 90, Indels: 44
0.66 0.23 0.11
Matches are distributed among these distances:
85 2 0.01
86 14 0.05
87 65 0.25
88 148 0.56
89 33 0.12
90 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (87 bp):
GGAAGATAAGATTGCCGTCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGACTTA
AATCTGCTTCCCTACTACCTGG
Found at i:33027641 original size:176 final size:174
Alignment explanation
Indices: 33027391--33027927 Score: 756
Period size: 175 Copynumber: 3.1 Consensus size: 174
33027381 CTGCTTAGGA
* * *
33027391 AGATAAGATCTGTAATCTTCAACCTATTCTACTGCTGTCTAGGGAAATAGGACTAGTGACTTAAA
1 AGATAAGA-CTGTAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAA
*
33027456 TTTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
65 TCTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
*
33027521 GGAGATAAGATCTGTAATTTTCAACCTACTCCATCACTGCT-T-AGGG
130 GGAGATAAGATCTGTAATTTTCGACCTA-TCC--CACTGCTGTCAGGG
*
33027567 AGATAAGGCT-TACAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAA
1 AGATAAGACTGT--AATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAA
* * * *
33027631 ATCTGCTTCCCTACTACCTGAGGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTT
64 ATCTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
33027696 GGGAGATAAGATCTGTAATTTTCGACCTATTCCACTGCTGTCCAGGG
129 GGGAGATAAGATCTGTAATTTTCGACCTATCCCACTGCTGT-CAGGG
* * * * *
33027743 AGATAAGACTGTTATCTTCTACCTATTCCACTGCTGCCCAGGGAGATAGGACTAGTGGCTTTAAT
1 AGATAAGACTGTAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAAT
* * * * *
33027808 CTACTTCCCTACTACCTGGGGAAGATAAGATTCGCCATCTTCAATATGCTTCACTACTGCTTAGG
66 CTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
* **
33027873 GAGATAAGATCTGCAATTTTCGACCTATTTCACTGCTGTCCAGGG
131 GAGATAAGATCTGTAATTTTCGACCTATCCCACTGCTGT-CAGGG
*
33027918 AGATAGGACT
1 AGATAAGACT
33027928 AGTGGCTTAA
Statistics
Matches: 326, Mismatches: 29, Indels: 13
0.89 0.08 0.04
Matches are distributed among these distances:
173 7 0.02
174 2 0.01
175 160 0.49
176 156 0.48
177 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (174 bp):
AGATAAGACTGTAATCTTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAAT
CTGCTTCCCTACTACCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
GAGATAAGATCTGTAATTTTCGACCTATCCCACTGCTGTCAGGG
Found at i:33027775 original size:43 final size:43
Alignment explanation
Indices: 33027696--33027795 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
33027686 CTACTGCTTT
* *
33027696 GGGAGATAAGATCTGTAATTTTCGACCTATTCCACTGCTGTCCA
1 GGGAGATAAGA-CTGTAATCTTCGACCTATTCCACTGCTGCCCA
* *
33027740 GGGAGATAAGACTGTTATCTTCTACCTATTCCACTGCTGCCCA
1 GGGAGATAAGACTGTAATCTTCGACCTATTCCACTGCTGCCCA
*
33027783 GGGAGATAGGACT
1 GGGAGATAAGACT
33027796 AGTGGCTTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 40 0.78
44 11 0.22
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (43 bp):
GGGAGATAAGACTGTAATCTTCGACCTATTCCACTGCTGCCCA
Found at i:33027831 original size:483 final size:476
Alignment explanation
Indices: 33027101--33028212 Score: 1480
Period size: 483 Copynumber: 2.3 Consensus size: 476
33027091 ATCTGTTATT
* ** *
33027101 TTCAACCTACTCCACTATTG-CTTAGGGAGATAGGACTAGTGACTTAAATCTGCTTCCCTACTAC
1 TTCAACCTATTCCACTGCTGTC-TAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTAC
* * * ** *
33027165 CTGGGAAAGATAAGATTCACCGTCTTCAATCTGCTTAACTACTGCATAGGGAGATAAGATCTGTA
65 CTGGG-AAGATAAGATTTAACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
* *
33027230 ATATTTAACCTACTCCACACTGCTTAGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCT
129 AT-TTTGACCTA-TTC-CACTGCTTAGGGAGATAAGACTTA-AATCTTCAACCTATTCCACTGCT
* ** *
33027295 GTCCAAGGAGATAGGACTAATGGCTTAAATCTGTTTCCCTACTAGATGGGGAAGATAAGATTCGC
190 GCCCAAGGAGATAGGACTAATGGCTTAAATCTACTTCCCTACTACATGGGGAAGATAAGATTCGC
* * * *
33027360 CGTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATCTTCAACCTA-TTCTACT
255 CATCTTCAATATGCTCCACTACTGCTTAGGAAGATAAGATCTGCAATCTTCAACCTATTTC-ACT
* * *
33027424 GCTGTCTAGGGAAATAGGACTAGTGACTTAAATTTGCTTCCCTACTACCTGGGGAAGATAAGATT
319 GCTGTCCAGGGAAATAGGACTAGTGACTTAAATCTGCTTCCCTACTACCT-AGGAAGATAAGATT
* * *
33027489 CGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCA
383 CACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCA
* *
33027554 TCA-CTG-CTTAGGGAGATAAGGCTTACAATC
448 -CAGCTGTC-CAGGGAGATAAGAC-TACAATC
33027584 TTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACC
** *
33027649 TGAGGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAA
66 TG-GGAAGATAAGATTTAACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
* *
33027714 TTTTCGACCTATTCCACTGCTGTCCAGGGAGATAAGACTGT-TATCTTCTACCTATTCCACTGCT
130 TTTT-GACCTATTCCACTGCT-T--AGGGAGATAAGACT-TAAATCTTCAACCTATTCCACTGCT
* * * *
33027778 GCCCAGGGAGATAGGACTAGTGGCTTTAATCTACTTCCCTACTACCTGGGGAAGATAAGATTCGC
190 GCCCAAGGAGATAGGACTAATGGCTTAAATCTACTTCCCTACTACATGGGGAAGATAAGATTCGC
* * * *
33027843 CATCTTCAATATGCTTCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTATTTCACTG
255 CATCTTCAATATGCTCCACTACTGCTTAGGAAGATAAGATCTGCAATCTTCAACCTATTTCACTG
* * * *
33027908 CTGTCCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCGTATTACCTAGGAAGATAAGATTCA
320 CTGTCCAGGGAAATAGGACTAGTGACTTAAATCTGCTTCCCTACTACCTAGGAAGATAAGATTCA
* * * *
33027973 CCATTTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTATTCCACA
385 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACA
***
33028038 GCTGTCCAGGGAGATAAGACTGGTATC
450 GCTGTCCAGGGAGATAAGACTACAATC
* * *
33028065 TTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGTTTAAATCTGCTTCCCTACTACT
1 TTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACC
* * *
33028130 TGGGGAAGATAAGA-TTCACTATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTA
66 T-GGGAAGATAAGATTTAAC-GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTA
33028194 ATTTTTGACCTATTCCACT
129 A-TTTTGACCTATTCCACT
33028213 ATCGTCCAGG
Statistics
Matches: 557, Mismatches: 59, Indels: 28
0.86 0.09 0.04
Matches are distributed among these distances:
480 3 0.01
481 142 0.25
482 97 0.17
483 294 0.53
484 20 0.04
485 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (476 bp):
TTCAACCTATTCCACTGCTGTCTAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTACC
TGGGAAGATAAGATTTAACGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
TTTGACCTATTCCACTGCTTAGGGAGATAAGACTTAAATCTTCAACCTATTCCACTGCTGCCCAA
GGAGATAGGACTAATGGCTTAAATCTACTTCCCTACTACATGGGGAAGATAAGATTCGCCATCTT
CAATATGCTCCACTACTGCTTAGGAAGATAAGATCTGCAATCTTCAACCTATTTCACTGCTGTCC
AGGGAAATAGGACTAGTGACTTAAATCTGCTTCCCTACTACCTAGGAAGATAAGATTCACCATCT
TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACAGCTGTC
CAGGGAGATAAGACTACAATC
Found at i:33028011 original size:175 final size:176
Alignment explanation
Indices: 33027870--33028233 Score: 475
Period size: 175 Copynumber: 2.1 Consensus size: 176
33027860 ACTACTGCTT
* * *
33027870 AGGGAGATAAGATCTGCAATTTTCGACCTATTTCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
1 AGGGAGATAAGA-CTGCAATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
* * * * *
33027935 TAAATCTGCTTCCGTATTACCT-AGGAAGATAAGATTCACCATTTTTGATCTGCTCCACTACTGC
65 TAAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTAC
* *
33027999 TTAGGGAGATAAGA-TCTGCAATTTTCGACCTATTCCACAGCTGTCC
130 TTAGGGAGATAAGATTCTGCAATCTTCGACATATTCCACAGCTGTCC
** *
33028045 AGGGAGATAAGACTGGTATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGTTT
1 AGGGAGATAAGACTGCAATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCTT
* * *
33028110 AAATCTGCTTCCCTACTACTTGGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTACT
66 AAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACT
* * * * *
33028175 TAGGGAGATAAGA-TCTGTAATTTTTGACCTATTCCACTATC-GTCC
131 TAGGGAGATAAGATTCTGCAATCTTCGACATATTCCAC-AGCTGTCC
* *
33028220 AGGCAGATAGGACT
1 AGGGAGATAAGACT
33028234 AGTGGCTTAA
Statistics
Matches: 168, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
174 65 0.39
175 101 0.60
176 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (176 bp):
AGGGAGATAAGACTGCAATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCTT
AAATCTGCTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACT
TAGGGAGATAAGATTCTGCAATCTTCGACATATTCCACAGCTGTCC
Found at i:33028029 original size:131 final size:132
Alignment explanation
Indices: 33027739--33028058 Score: 455
Period size: 131 Copynumber: 2.4 Consensus size: 132
33027729 ACTGCTGTCC
** * * *
33027739 AGGGAGATAAGA-CTGTTATCTTCTACCTATTCCACTGCTGCCCAGGGAGATAGGACTAGTGGCT
1 AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
* * * *
33027803 TTAATCTACTTCCCTACTACCTGGGGAAGATAAGATTCGCCATCTTCAATATGCTTCACTACTGC
66 TAAATCTACTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCAATATGCTCCACTACTGC
33027868 TT
131 TT
*
33027870 AGGGAGATAAGATCTGCAATTTTCGACCTATTTCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
1 AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
* * * * ** *
33027935 TAAATCTGCTTCCGTATTACCT-AGGAAGATAAGATTCACCATTTTTGATCTGCTCCACTACTGC
66 TAAATCTACTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCAATATGCTCCACTACTGC
33027999 TT
131 TT
* *
33028001 AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACAGCTGTCCAGGGAGATAAGACT
1 AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACTGCTGTCCAGGGAGATAGGACT
33028059 GGTATCTTCA
Statistics
Matches: 168, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
131 104 0.62
132 64 0.38
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (132 bp):
AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGCT
TAAATCTACTTCCCTACTACCTGAGGAAGATAAGATTCACCATCTTCAATATGCTCCACTACTGC
TT
Found at i:33028036 original size:44 final size:44
Alignment explanation
Indices: 33027988--33028213 Score: 103
Period size: 44 Copynumber: 5.2 Consensus size: 44
33027978 TTTGATCTGC
33027988 TCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTAT
* ** * *
33028032 TCCAC-AGCTG-TCCAGGGAGATAAGA-CTGGTATCTTCAACCTAT
1 TCCACTA-CTGCT-TAGGGAGATAAGATCTGCAATTTTCGACCTAT
* * * * ** * *
33028075 TCCACTGCTG-TCCAGGGAGATAGGA-CT--AGTGGTTTAAATCTGCT
1 TCCACTACTGCT-TAGGGAGATAAGATCTGCAAT--TTTCGACCT-AT
* * * * **
33028119 TCC-CTACTACTTGGGGAAGATAAGAT-T-CACTATCTTCGATCTGC
1 TCCACTACTGCTTAGGG-AGATAAGATCTGCA--ATTTTCGACCTAT
* * *
33028163 TCCACTACTACTTAGGGAGATAAGATCTGTAATTTTTGACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTAT
33028207 TCCACTA
1 TCCACTA
33028214 TCGTCCAGGC
Statistics
Matches: 136, Mismatches: 31, Indels: 30
0.69 0.16 0.15
Matches are distributed among these distances:
41 1 0.01
43 53 0.39
44 60 0.44
45 20 0.15
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCGACCTAT
Found at i:33028085 original size:43 final size:43
Alignment explanation
Indices: 33028001--33028101 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
33027991 ACTACTGCTT
* *
33028001 AGGGAGATAAGATCTGCAATTTTCGACCTATTCCACAGCTGTCC
1 AGGGAGATAAGA-CTGCAATCTTCAACCTATTCCACAGCTGTCC
** *
33028045 AGGGAGATAAGACTGGTATCTTCAACCTATTCCACTGCTGTCC
1 AGGGAGATAAGACTGCAATCTTCAACCTATTCCACAGCTGTCC
*
33028088 AGGGAGATAGGACT
1 AGGGAGATAAGACT
33028102 AGTGGTTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 39 0.76
44 12 0.24
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (43 bp):
AGGGAGATAAGACTGCAATCTTCAACCTATTCCACAGCTGTCC
Found at i:33028384 original size:132 final size:132
Alignment explanation
Indices: 33028045--33028384 Score: 438
Period size: 132 Copynumber: 2.6 Consensus size: 132
33028035 ACAGCTGTCC
** * * *
33028045 AGGGAGATAAGA-CTGGTATCTTCAACCTATTCCACTGCTGTCCAGGGAGATAGGACTAGTGGT-
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTAGT-GTC
33028108 TTAAATCTGCTTCCCTACTACTTGGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTA
65 TTAAATCTGCTTCCCTACTACTTGGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTA
33028173 CTT
130 CTT
* * * * * *
33028176 AGGGAGATAAGATCTGTAATTTTTGACCTATTCCACTATCGTCCAGGCAGATAGGACTAGTGGCT
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTAGTGTCT
* ** *
33028241 TAAATCAGCTTCCCTACTACCTT-GGGAAGATAAGATTTGTCGTAT-TT-GATCTGCTCCACTAT
66 TAAATCTGCTTCCCTACTA-CTTGGGGAAGATAAGA-TTCAC-TATCTTCGATCTGCTCCACTAC
33028303 TACTT
128 TACTT
* *
33028308 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTGGTATCT
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTAGTGTCT
**
33028373 TCGATCTGCTTC
66 TAAATCTGCTTC
33028385 ACCGTCAGTA
Statistics
Matches: 179, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
131 13 0.07
132 155 0.87
133 8 0.04
134 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (132 bp):
AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTAGTGTCT
TAAATCTGCTTCCCTACTACTTGGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTAC
TT
Found at i:33028427 original size:132 final size:131
Alignment explanation
Indices: 33028045--33028427 Score: 317
Period size: 132 Copynumber: 2.9 Consensus size: 131
33028035 ACAGCTGTCC
** * * * * * *
33028045 AGGGAGATAAGA-CTGGTATCTTCAACCTATTCCACT-GCTGTCCAGGGAGATAGGACTAGTGGT
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTATC-GTCCAGGCAGATAGGACTAGTAGC
* * * * ** * * *
33028108 TTAAATCTGCTTCCCTACTACTTGGGGAAGATAAGAT-TCACTATCTTCGATCTGCTCCACTACT
65 TTAAATCAGCTTCCCTACTACCT-AGGAAGACAAGATCTGTC-ATATTCAACCTGCTCCACTACT
33028172 ACTT
128 ACTT
* * *
33028176 AGGGAGATAAGATCTGTAATTTTTGACCTATTCCACTATCGTCCAGGCAGATAGGACTAGTGGCT
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTATCGTCCAGGCAGATAGGACTAGTAGCT
* * * * ** * *
33028241 TAAATCAGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTATTTGATCTGCTCCACTATTAC
66 TAAATCAGCTTCCCTACTACC-TAGGAAGACAAGATCTGTCATATTCAACCTGCTCCACTACTAC
33028306 TT
130 TT
* * * * *
33028308 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTGTTGTCCAGGGAGATAGGACTGGTATCT
1 AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTATCGTCCAGGCAGATAGGACTAGTAGCT
** * * * *
33028373 TCGATCTGCTTCACCGTCAGTA-C-AGGAAGGCAAGATCTGTTATATTCAACCTGCT
66 TAAATCAGCTTC-CC-T-ACTACCTAGGAAGACAAGATCTGTCATATTCAACCTGCT
33028428 TCGCTGCAAC
Statistics
Matches: 208, Mismatches: 37, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
131 12 0.06
132 185 0.89
133 6 0.03
134 2 0.01
135 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (131 bp):
AGGGAGATAAGATCTGCAATTTTTAACCTATTCCACTATCGTCCAGGCAGATAGGACTAGTAGCT
TAAATCAGCTTCCCTACTACCTAGGAAGACAAGATCTGTCATATTCAACCTGCTCCACTACTACT
T
Found at i:33029849 original size:46 final size:44
Alignment explanation
Indices: 33029799--33029936 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 44
33029789 TTTTTTAAAA
* *
33029799 TTTTTTTTGGATTCAAAGTGCCTTTTGCAGGTTTTCACTTTGGTCT
1 TTTTTTTTGGAATCAAAGTGCCATTTGC-GGTTTTCAC-TTGGTCT
* *
33029845 TTTTTTTAGGAATCAAAGTGCCCTTTGCGGGTTTTCACCTTGGTCT
1 TTTTTTTTGGAATCAAAGTGCCATTTGC-GGTTTTCA-CTTGGTCT
*
33029891 TTTTTTTTAGGAATCAAAGCGCCATTTGCGAGTTTTCAACTTGGTC
1 TTTTTTTT-GGAATCAAAGTGCCATTTGCG-GTTTTC-ACTTGGTC
33029937 CCTTTTCCTT
Statistics
Matches: 81, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
46 48 0.59
47 32 0.40
48 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (44 bp):
TTTTTTTTGGAATCAAAGTGCCATTTGCGGTTTTCACTTGGTCT
Found at i:33029895 original size:47 final size:46
Alignment explanation
Indices: 33029799--33029936 Score: 188
Period size: 47 Copynumber: 3.0 Consensus size: 46
33029789 TTTTTTAAAA
* * * *
33029799 TTTTTTTT-GGATTCAAAGTGCCTTTTGCAGGTTTTCACTTTGGTC
1 TTTTTTTTAGGAATCAAAGTGCCATTTGCGGGTTTTCACCTTGGTC
*
33029844 TTTTTTTTAGGAATCAAAGTGCCCTTTGCGGGTTTTCACCTTGGTC
1 TTTTTTTTAGGAATCAAAGTGCCATTTGCGGGTTTTCACCTTGGTC
* * *
33029890 TTTTTTTTTAGGAATCAAAGCGCCATTTGCGAGTTTTCAACTTGGTC
1 -TTTTTTTTAGGAATCAAAGTGCCATTTGCGGGTTTTCACCTTGGTC
33029937 CCTTTTCCTT
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 8 0.10
46 33 0.40
47 42 0.51
ACGTcount: A:0.17, C:0.17, G:0.20, T:0.46
Consensus pattern (46 bp):
TTTTTTTTAGGAATCAAAGTGCCATTTGCGGGTTTTCACCTTGGTC
Found at i:33030790 original size:22 final size:22
Alignment explanation
Indices: 33030762--33030803 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
33030752 TTAACCTCTC
*
33030762 CTTTTTTCTTTTC-TTTTCATCT
1 CTTTTTT-TTATCATTTTCATCT
33030784 CTTTTTTTTATCATTTTCAT
1 CTTTTTTTTATCATTTTCAT
33030804 TTTTTCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (22 bp):
CTTTTTTTTATCATTTTCATCT
Found at i:33030821 original size:14 final size:15
Alignment explanation
Indices: 33030788--33030823 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
33030778 TCATCTCTTT
33030788 TTTTTATCATTTTCA
1 TTTTTATCATTTTCA
*
33030803 TTTTT-TCATTTTGA
1 TTTTTATCATTTTCA
33030817 TTTTTAT
1 TTTTTAT
33030824 TTTTATCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.17, C:0.08, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTTATCATTTTCA
Found at i:33030846 original size:26 final size:26
Alignment explanation
Indices: 33030817--33030880 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 26
33030807 TTCATTTTGA
*
33030817 TTTTTATTTTTATCTAGATTTTTCCTT
1 TTTTTATTTTT-TCTAGATTTTTCATT
* *
33030844 TTTTTATTTTTTCTTGATTTTTGA-T
1 TTTTTATTTTTTCTAGATTTTTCATT
*
33030869 TTTTGATTTTTT
1 TTTTTATTTTTT
33030881 TTAATTGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 12 0.36
26 10 0.30
27 11 0.33
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.75
Consensus pattern (26 bp):
TTTTTATTTTTTCTAGATTTTTCATT
Found at i:33032592 original size:30 final size:30
Alignment explanation
Indices: 33032558--33032654 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
33032548 AGCTCACTCC
*
33032558 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGTTAAACCT
* * * * *
33032588 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGTTAAACCT
* *
33032618 CAGCTCAACTTTAGCTCACGAGTTAAAACT
1 TAGCTCAACTTTAGCTCACGAGTTAAACCT
33032648 TAGCTCA
1 TAGCTCA
33032655 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGTTAAACCT
Found at i:33038668 original size:45 final size:46
Alignment explanation
Indices: 33038555--33038750 Score: 177
Period size: 46 Copynumber: 4.3 Consensus size: 46
33038545 CTTACTTCCG
* * * *
33038555 TCATGATGCCATAGCATCTTTCAACTATGGTCTTACTTATTTTAAT
1 TCATGTTGCCATAACGTCTTTCAACTATGGTCTTACTTGTTTTAAT
* *
33038601 TCCTGTTGCCATAACGTCTTTCAACTATAGTCTTACTTGTTTTAA-
1 TCATGTTGCCATAACGTCTTTCAACTATGGTCTTACTTGTTTTAAT
* * * * *
33038646 TCATGTTGCCATAATGTTTTTCAGCTATGGTCTTACTCG-TTT-AC
1 TCATGTTGCCATAACGTCTTTCAACTATGGTCTTACTTGTTTTAAT
* * ** * *
33038690 TCATATTGTCATGTCGTCTTTCAGCTATGGTCTTA-TTCGTTTGAA-
1 TCATGTTGCCATAACGTCTTTCAACTATGGTCTTACTT-GTTTTAAT
*
33038735 TCATGTTTGCAATAAC
1 TCATG-TTGCCATAAC
33038751 ATATATATAT
Statistics
Matches: 120, Mismatches: 25, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
43 2 0.02
44 33 0.28
45 39 0.32
46 46 0.38
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.44
Consensus pattern (46 bp):
TCATGTTGCCATAACGTCTTTCAACTATGGTCTTACTTGTTTTAAT
Found at i:33038715 original size:44 final size:45
Alignment explanation
Indices: 33038571--33038738 Score: 153
Period size: 44 Copynumber: 3.7 Consensus size: 45
33038561 TGCCATAGCA
* ** * *
33038571 TCTTTCAACTATGGTCTTACTTATTTTAATTCCTGTTGCCATAA-CG
1 TCTTTCAGCTATGGTCTTAC-TCGTTTAA-TCATATTGCCATAATCG
* * * *
33038617 TCTTTCAACTATAGTCTTACTTGTTTTAATCATGTTGCCATAAT-G
1 TCTTTCAGCTATGGTCTTACTCG-TTTAATCATATTGCCATAATCG
* * * *
33038662 TTTTTCAGCTATGGTCTTACTCGTTTACTCATATTGTCAT-GTCG
1 TCTTTCAGCTATGGTCTTACTCGTTTAATCATATTGCCATAATCG
*
33038706 TCTTTCAGCTATGGTCTTATTCGTTTGAATCAT
1 TCTTTCAGCTATGGTCTTACTCGTTT-AATCAT
33038739 GTTTGCAATA
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 39 0.38
45 39 0.38
46 24 0.23
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCGTTTAATCATATTGCCATAATCG
Found at i:33045653 original size:16 final size:16
Alignment explanation
Indices: 33045632--33045670 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33045622 AGGGCTAGAA
33045632 TATGCCCAAGAAAGAG
1 TATGCCCAAGAAAGAG
* *
33045648 TATGCCTAAGGAAGAG
1 TATGCCCAAGAAAGAG
*
33045664 TACGCCC
1 TATGCCC
33045671 GAGAGTTTTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15
Consensus pattern (16 bp):
TATGCCCAAGAAAGAG
Found at i:33051955 original size:18 final size:18
Alignment explanation
Indices: 33051931--33051980 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
33051921 AGATTCGATG
* *
33051931 CAAAAAAAAAAGAAGGAA
1 CAAAAAAAAAAAAAAGAA
33051949 -AAAAAAATAAAAAAAGAA
1 CAAAAAAA-AAAAAAAGAA
33051967 CAAAAATAAAAAAA
1 CAAAAA-AAAAAAA
33051981 CAAAAAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.26
18 8 0.30
19 10 0.37
20 2 0.07
ACGTcount: A:0.84, C:0.04, G:0.08, T:0.04
Consensus pattern (18 bp):
CAAAAAAAAAAAAAAGAA
Found at i:33051962 original size:8 final size:8
Alignment explanation
Indices: 33051949--33051988 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
33051939 AAAGAAGGAA
33051949 AAAAAAAT
1 AAAAAAAT
*
33051957 AAAAAAAG
1 AAAAAAAT
33051965 AACAAAAAT
1 AA-AAAAAT
*
33051974 AAAAAAAC
1 AAAAAAAT
33051982 AAAAAAA
1 AAAAAAA
33051989 CCTCTACCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.88, C:0.05, G:0.03, T:0.05
Consensus pattern (8 bp):
AAAAAAAT
Found at i:33051972 original size:22 final size:23
Alignment explanation
Indices: 33051932--33051987 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
33051922 GATTCGATGC
**
33051932 AAAAAAAAAAGAAGGAAAA-AAA
1 AAAAAAAAAAGAACAAAAATAAA
*
33051954 AATAAAAAAAGAACAAAAATAAA
1 AAAAAAAAAAGAACAAAAATAAA
33051977 AAAACAAAAAA
1 AAAA-AAAAAA
33051988 ACCTCTACCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 16 0.57
23 6 0.21
24 6 0.21
ACGTcount: A:0.86, C:0.04, G:0.07, T:0.04
Consensus pattern (23 bp):
AAAAAAAAAAGAACAAAAATAAA
Found at i:33051988 original size:17 final size:17
Alignment explanation
Indices: 33051948--33051988 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
33051938 AAAAGAAGGA
*
33051948 AAAAAAAATAAAAAAAG
1 AAAAAAAATAAAAAAAC
*
33051965 AACAAAAATAAAAAAAC
1 AAAAAAAATAAAAAAAC
33051982 AAAAAAA
1 AAAAAAA
33051989 CCTCTACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.88, C:0.05, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAAAATAAAAAAAC
Found at i:33052507 original size:14 final size:14
Alignment explanation
Indices: 33052488--33052532 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
33052478 TGAAAAAATG
33052488 TGAAAAAATGAAAA
1 TGAAAAAATGAAAA
33052502 TG-AAAAATGAAAAA
1 TGAAAAAATG-AAAA
*
33052516 TGGAAAAAATAAAAA
1 T-GAAAAAATGAAAA
33052531 TG
1 TG
33052533 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 7 0.26
14 8 0.30
15 6 0.22
16 6 0.22
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (14 bp):
TGAAAAAATGAAAA
Found at i:33052521 original size:15 final size:16
Alignment explanation
Indices: 33052481--33052534 Score: 71
Period size: 16 Copynumber: 3.6 Consensus size: 16
33052471 GATGATGTGA
33052481 AAAAATGTGAAAAAATG
1 AAAAATG-GAAAAAATG
33052498 -AAAAT-G-AAAAATG
1 AAAAATGGAAAAAATG
33052511 AAAAATGGAAAAAAT-
1 AAAAATGGAAAAAATG
33052526 AAAAATGGA
1 AAAAATGGA
33052535 GAGGCTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
13 7 0.21
14 6 0.18
15 10 0.29
16 11 0.32
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (16 bp):
AAAAATGGAAAAAATG
Found at i:33052529 original size:6 final size:7
Alignment explanation
Indices: 33052491--33052532 Score: 52
Period size: 6 Copynumber: 6.0 Consensus size: 7
33052481 AAAAATGTGA
33052491 AAAAATG
1 AAAAATG
33052498 -AAAATG
1 AAAAATG
33052504 AAAAATG
1 AAAAATG
33052511 AAAAATGG
1 AAAAAT-G
33052519 AAAAAAT-
1 -AAAAATG
33052526 AAAAATG
1 AAAAATG
33052533 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 12 0.39
7 12 0.39
8 1 0.03
9 6 0.19
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:33053951 original size:88 final size:88
Alignment explanation
Indices: 33053797--33054124 Score: 478
Period size: 88 Copynumber: 3.7 Consensus size: 88
33053787 CAGAGCAGAC
* * * * * *
33053797 TGAAAATGGCAGATCTTGCCATCCTGTACTGACAGCGAAGCAGATCGAAGATATCAACCTTGTCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAACGAAGCAGATCGAAGATACCAGCCTTATCT
33053862 CCTTGGGCAGTAGTGGAGTAGGT
66 CCTTGGGCAGTAGTGGAGTAGGT
* * *
33053885 TGAAAAT-GACAGATCTTGCCTTCTTGTATTAACAACGAAGCAGATCGAAGATACCAGCCTTATC
1 TGAAAATAG-CAGATCTTGCCTTCCTGTACTGACAACGAAGCAGATCGAAGATACCAGCCTTATC
33053949 TCCTTGGGCAGTAGTGGAGTAGGT
65 TCCTTGGGCAGTAGTGGAGTAGGT
* * * *
33053973 GGAAAATAGCAGATCTTGCCTTCCTGTACTGACAGCGAGGCAGATCGAAGATACCAGCCTTGTCT
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAACGAAGCAGATCGAAGATACCAGCCTTATCT
*
33054038 CCTTGGGCAGTAGTGGACTAGGT
66 CCTTGGGCAGTAGTGGAGTAGGT
* * * *
33054061 TGAAAATAGCAGATCTTGCCTTCCTGTACTGGCAACGAAGCAGATCAAAGACACCAGTCTTATC
1 TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAACGAAGCAGATCGAAGATACCAGCCTTATC
33054125 ATCTTGACGT
Statistics
Matches: 214, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 1 0.00
88 212 0.99
89 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (88 bp):
TGAAAATAGCAGATCTTGCCTTCCTGTACTGACAACGAAGCAGATCGAAGATACCAGCCTTATCT
CCTTGGGCAGTAGTGGAGTAGGT
Found at i:33054621 original size:267 final size:266
Alignment explanation
Indices: 33054146--33054982 Score: 1244
Period size: 267 Copynumber: 3.1 Consensus size: 266
33054136 GCAATGGAAT
33054146 AGATTGAAGCCACAACGACAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCACGA
1 AGATTGAAGCCACAACGACAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCACGA
* * * *
33054211 TAGTGGGTCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAATGGATTGAAACTGTG
66 TAGCGGATCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAGTGGATTGAAGCTGTG
* * *
33054276 GGCAGCGAATCTTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACAGTGGATCTTAC
131 GGCAGCGAATCCTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
*
33054341 TTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCCGACATTGCA
196 TT-CCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACAGCAGATCTGGTTTCCCCGACATTGCA
33054406 ATTAAAA
260 ATTAAAA
* *
33054413 AGATTGAAGCCACAACGGCAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCGCGA
1 AGATTGAAGCCACAACGACAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCACGA
* * * *
33054478 TGGCGGATCTTATCTTCCTGGTATTAAGGCTTGGATTAGATGAAGTGGAGTGGATTGAAGCTGTG
66 TAGCGGATCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAGTGGATTGAAGCTGTG
* *
33054543 GGCAGCGGATCCTATCTCTTTAGCATCACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
131 GGCAGCGAATCCTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
* * *
33054608 TTCCGTGGCGGTGTAGTGGAACAGATTAAAGCTACGACAACAGATCTGGTTTCCCCAACATTGCA
196 TTCC-TGGCGGTGTAGTGGAACAGATTGAAGCTACGACAGCAGATCTGGTTTCCCCGACATTGCA
33054673 ATTAAAA
260 ATTAAAA
* * * * * * **
33054680 AAATTGAAGCCGCAACGGCGGATCTTATTTTCCTAGAGTCGCAGCGGAATAGATTGAAGCCACGA
1 AGATTGAAGCCACAACGACAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCACGA
* ** * * * *
33054745 TTGCAAATCTTATCTCCCTGGCGTTAAGGCTTTGATTAGCTAAAGTGGAGTGGATTGCAGCTGTG
66 TAGCGGATCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAGTGGATTGAAGCTGTG
*
33054810 GGTAGCGAATCCTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
131 GGCAGCGAATCCTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
* * *
33054875 TTTCCTGGTGGTGTAGTGGAACAGATTGAAG-TCACGACAGCGGATCTGGTTTCCCTGACATTGC
196 -TTCCTGGCGGTGTAGTGGAACAGATTGAAGCT-ACGACAGCAGATCTGGTTTCCCCGACATTGC
* *
33054939 GATTTAAA
259 AATTAAAA
* * *
33054947 AGATTGAAGCCACAACGACGGATCTTACTTCCCTGG
1 AGATTGAAGCCACAACGACAGATCTTATTTTCCTGG
33054983 TAGTGTAATG
Statistics
Matches: 513, Mismatches: 54, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
266 3 0.01
267 506 0.99
268 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (266 bp):
AGATTGAAGCCACAACGACAGATCTTATTTTCCTGGCGTCGCAGCGGAGCAGATTGAAGCCACGA
TAGCGGATCTTATCTCCCTGGTGTTAAGGCTTGGATTAGCTGAAGTGGAGTGGATTGAAGCTGTG
GGCAGCGAATCCTATCTCTTTAGCATTACAGTGGAAAAGATTGAAGCCACAACGGCGGATCTTAC
TTCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACAGCAGATCTGGTTTCCCCGACATTGCAA
TTAAAA
Found at i:33054901 original size:50 final size:50
Alignment explanation
Indices: 33054839--33055006 Score: 151
Period size: 50 Copynumber: 3.4 Consensus size: 50
33054829 TTAGCATTAC
*
33054839 AGTGGAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTGGTGGTGT
1 AGTGGAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTGGTAGTGT
* * * * ** ** *
33054889 AGTGGAACAGATTGAAGTCACGACAGCGGATC-TGGTTTCCCTGACATTG-
1 AGTGGAAAAGATTGAAGCCACAACGGCGGATCTTACTTT-CCTGGTAGTGT
* ** * *
33054938 CGATTTAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGGTAGTGT
1 AG-TGGAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTGGTAGTGT
* *
33054989 AATGGAACAGATTGAAGC
1 AGTGGAAAAGATTGAAGC
33055007 TATGACGGTG
Statistics
Matches: 85, Mismatches: 29, Indels: 8
0.70 0.24 0.07
Matches are distributed among these distances:
49 5 0.06
50 77 0.91
51 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (50 bp):
AGTGGAAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTGGTAGTGT
Found at i:33054969 original size:100 final size:100
Alignment explanation
Indices: 33054844--33055078 Score: 346
Period size: 100 Copynumber: 2.4 Consensus size: 100
33054834 ATTACAGTGG
* * *
33054844 AAAAGATTGAAGCCACAACGGCGGATCTTACTTTCCTGGTGGTGTAGTGGAACAGATTGAAG-TC
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGTAGTGTAATGGAACAGATTGAAGCT-
* * * *
33054908 ACGACAGCGGATCTGGTTTCCCTGACATTGCGATTT
65 ACGACAGCGGATCTGGTTCCCCCGACATTGCAATTA
*
33054944 AAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGGTAGTGTAATGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGTAGTGTAATGGAACAGATTGAAGCTA
* * * *
33055009 TGACGGTGGATCTGGTTCCCCCGTCATTGCAATTA
66 CGACAGCGGATCTGGTTCCCCCGACATTGCAATTA
33055044 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCC
1 AAAAGATTGAAGCCACAACGGCGGATCTTACTTCC
33055079 TTAGCGGTGC
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
100 120 0.99
101 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (100 bp):
AAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGGTAGTGTAATGGAACAGATTGAAGCTA
CGACAGCGGATCTGGTTCCCCCGACATTGCAATTA
Found at i:33055070 original size:50 final size:50
Alignment explanation
Indices: 33054897--33055071 Score: 136
Period size: 50 Copynumber: 3.5 Consensus size: 50
33054887 GTAGTGGAAC
* * * * * * * *
33054897 AGATTGAAGTCACGACAGCGGATCTGGTTTCCCTGACATTGCGATTTAAA
1 AGATTGAAGCCACAACGGCGGATCTGGTTCCCCCGTCATTGCAATTAAAA
* ** ** * * ** *
33054947 AGATTGAAGCCACAACGACGGATCTTACTTCCCTGGT-AGTGTAATGGAAC
1 AGATTGAAGCCACAACGGCGGATC-TGGTTCCCCCGTCATTGCAATTAAAA
* ** *
33054997 AGATTGAAGCTATGACGGTGGATCTGGTTCCCCCGTCATTGCAATTAAAA
1 AGATTGAAGCCACAACGGCGGATCTGGTTCCCCCGTCATTGCAATTAAAA
33055047 AGATTGAAGCCACAACGGCGGATCT
1 AGATTGAAGCCACAACGGCGGATCT
33055072 TACTTCCTTA
Statistics
Matches: 89, Mismatches: 34, Indels: 4
0.70 0.27 0.03
Matches are distributed among these distances:
49 8 0.09
50 75 0.84
51 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGCGGATCTGGTTCCCCCGTCATTGCAATTAAAA
Found at i:33056331 original size:3 final size:3
Alignment explanation
Indices: 33056325--33056383 Score: 68
Period size: 3 Copynumber: 19.7 Consensus size: 3
33056315 GTTATCTTTG
*
33056325 TTA TTA -TA TTA TATA TTA CTA TTA TTA TTA -TA TTAA TTA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
*
33056370 TTT TTA TTA TTA TT
1 TTA TTA TTA TTA TT
33056384 CTAATACATA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 4 0.08
3 38 0.79
4 6 0.12
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:33056355 original size:24 final size:24
Alignment explanation
Indices: 33056325--33056379 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
33056315 GTTATCTTTG
33056325 TTATTATATT-ATATATTACTATTA
1 TTATTATATTAAT-TATTACTATTA
* *
33056349 TTATTATATTAATTATTATTATTT
1 TTATTATATTAATTATTACTATTA
33056373 TTATTAT
1 TTATTAT
33056380 TATTCTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 26 0.93
25 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TTATTATATTAATTATTACTATTA
Found at i:33070036 original size:16 final size:16
Alignment explanation
Indices: 33070017--33070047 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33070007 TATATTATTA
*
33070017 TTGTGTTTATTTTCTT
1 TTGTGATTATTTTCTT
33070033 TTGTGATTATTTTCT
1 TTGTGATTATTTTCT
33070048 GCAAGGCATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.13, T:0.71
Consensus pattern (16 bp):
TTGTGATTATTTTCTT
Found at i:33082776 original size:26 final size:26
Alignment explanation
Indices: 33082746--33082813 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
33082736 GTTCCGACCT
33082746 ACAGCTCGTGTGAGCAGACCCATTTC
1 ACAGCTCGTGTGAGCAGACCCATTTC
*
33082772 ACAGCTCGTGTGAGCAGGCCCATTTC
1 ACAGCTCGTGTGAGCAGACCCATTTC
*
33082798 ACATCTCGTGTGAGCA
1 ACAGCTCGTGTGAGCA
33082814 TACTCTTTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (26 bp):
ACAGCTCGTGTGAGCAGACCCATTTC
Found at i:33082823 original size:26 final size:26
Alignment explanation
Indices: 33082750--33082832 Score: 103
Period size: 26 Copynumber: 3.2 Consensus size: 26
33082740 CGACCTACAG
*
33082750 CTCGTGTGAGCAGACCCATTTCACAG
1 CTCGTGTGAGCAGACCCATTTCACAA
* *
33082776 CTCGTGTGAGCAGGCCCATTTCACAT
1 CTCGTGTGAGCAGACCCATTTCACAA
* * * *
33082802 CTCGTGTGAGCATACTCTTTTCGCAA
1 CTCGTGTGAGCAGACCCATTTCACAA
33082828 CTCGT
1 CTCGT
33082833 ATGAATATAT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAA
Found at i:33095745 original size:25 final size:25
Alignment explanation
Indices: 33095717--33095787 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
33095707 AGGCTTCCCT
*
33095717 GATGACTCGCCCCAAAGGCTTTACA
1 GATGACTCGCCACAAAGGCTTTACA
*
33095742 GATGACTCACCACAAAGGCTTTACA
1 GATGACTCGCCACAAAGGCTTTACA
* *
33095767 GATGACTTGCCACAAGGGCTT
1 GATGACTCGCCACAAAGGCTT
33095788 CCCAAATGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (25 bp):
GATGACTCGCCACAAAGGCTTTACA
Found at i:33095850 original size:25 final size:25
Alignment explanation
Indices: 33095816--33095877 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
33095806 AGATGTCTTG
*
33095816 CCATAAAGGCTTTATATATGACTCA
1 CCATAAAGGCTTTATAGATGACTCA
*
33095841 CCATAAAGGCTTTATAGATGACTCT
1 CCATAAAGGCTTTATAGATGACTCA
*
33095866 CCACAAAGGCTT
1 CCATAAAGGCTT
33095878 CCTAGATGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
CCATAAAGGCTTTATAGATGACTCA
Found at i:33095894 original size:25 final size:25
Alignment explanation
Indices: 33095805--33095897 Score: 89
Period size: 25 Copynumber: 3.7 Consensus size: 25
33095795 GATTCACCAC
* *
33095805 TAGATGTCTTGCCATAAAGGCTTTA
1 TAGATGACTTGCCACAAAGGCTTTA
* ** *
33095830 TATATGACTCACCATAAAGGCTTTA
1 TAGATGACTTGCCACAAAGGCTTTA
**
33095855 TAGATGACTCT-CCACAAAGGCTTCC
1 TAGATGACT-TGCCACAAAGGCTTTA
*
33095880 TAGATGTCTTGCCACAAA
1 TAGATGACTTGCCACAAA
33095898 ATCTTCCCAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 1 0.02
25 55 0.98
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (25 bp):
TAGATGACTTGCCACAAAGGCTTTA
Found at i:33096972 original size:15 final size:17
Alignment explanation
Indices: 33096942--33096977 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
33096932 TTTGAAAAAT
33096942 AAATTTTTCATTTTTA-
1 AAATTTTTCATTTTTAG
33096958 AAATTTTTCA-TTTTAG
1 AAATTTTTCATTTTTAG
33096974 AAAT
1 AAAT
33096978 AATATATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.56
Consensus pattern (17 bp):
AAATTTTTCATTTTTAG
Found at i:33097004 original size:33 final size:32
Alignment explanation
Indices: 33096961--33097078 Score: 109
Period size: 33 Copynumber: 3.6 Consensus size: 32
33096951 ATTTTTAAAA
*
33096961 TTTTTCATTTTAGAAATAATATATATCTAATAC
1 TTTTTAATTTTAGAAATAATATATAT-TAATAC
* *
33096994 TTTTTAATTTTA-AAA-AATGA-AGTTTTAAATAAT
1 TTTTTAATTTTAGAAATAAT-ATA-TATT-AAT-AC
*
33097027 TTTTTCATTTTTAGAAATAATATATA-TAATAC
1 TTTTT-AATTTTAGAAATAATATATATTAATAC
*
33097059 TTTTTAATTTTAAAAATAAT
1 TTTTTAATTTTAGAAATAAT
33097079 GTTTTAAAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
31 18 0.26
32 15 0.22
33 20 0.29
34 7 0.10
35 5 0.07
36 4 0.06
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (32 bp):
TTTTTAATTTTAGAAATAATATATATTAATAC
Found at i:33097058 original size:65 final size:64
Alignment explanation
Indices: 33096961--33097086 Score: 202
Period size: 67 Copynumber: 1.9 Consensus size: 64
33096951 ATTTTTAAAA
33096961 TTTTTCATTTTAGAAATAATATATATCTAATACTTTTTAATTTTAAAAAATGAA-GTTTTAAATA
1 TTTTTCATTTTAGAAATAATATATA-CTAATACTTTTTAATTTT-AAAAAT-AATGTTTTAAATA
33097025 AT
63 AT
33097027 TTTTTCATTTTTAGAAATAATATATA-TAATACTTTTTAATTTTAAAAATAATGTTTTAAA
1 TTTTTCA-TTTTAGAAATAATATATACTAATACTTTTTAATTTTAAAAATAATGTTTTAAA
33097087 ACTTGTAAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
63 2 0.03
64 14 0.24
65 17 0.29
66 7 0.12
67 18 0.31
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (64 bp):
TTTTTCATTTTAGAAATAATATATACTAATACTTTTTAATTTTAAAAATAATGTTTTAAATAAT
Found at i:33097708 original size:20 final size:19
Alignment explanation
Indices: 33097682--33097733 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 19
33097672 AACAATGAAT
33097682 CTGTTCACCAAGAGATACAA
1 CTGTTCA-CAAGAGATACAA
*
33097702 TTGTTCA-AA-AGATACAA
1 CTGTTCACAAGAGATACAA
*
33097719 CTGCTCATCAAGAGA
1 CTGTTCA-CAAGAGA
33097734 CGGGACTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 13 0.50
18 2 0.08
19 2 0.08
20 9 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23
Consensus pattern (19 bp):
CTGTTCACAAGAGATACAA
Found at i:33098155 original size:15 final size:15
Alignment explanation
Indices: 33098133--33098170 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
33098123 AAATACTAAT
*
33098133 AATAATAACAATAA-
1 AATAATAAAAATAAC
33098147 AAGTAATAAAAATAAC
1 AA-TAATAAAAATAAC
33098163 AATAATAA
1 AATAATAA
33098171 TACTAAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 17 0.81
16 2 0.10
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (15 bp):
AATAATAAAAATAAC
Found at i:33107124 original size:20 final size:20
Alignment explanation
Indices: 33107101--33107142 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
33107091 ATAAATTGGA
33107101 ATTAAAAATGATTAATTTGC
1 ATTAAAAATGATTAATTTGC
*
33107121 ATTAAAAATGGTTAATTTGC
1 ATTAAAAATGATTAATTTGC
33107141 AT
1 AT
33107143 GTTTTGTGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.40
Consensus pattern (20 bp):
ATTAAAAATGATTAATTTGC
Found at i:33109833 original size:39 final size:41
Alignment explanation
Indices: 33109732--33109915 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 41
33109722 TTGAATGATG
* *
33109732 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
33109772 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
33109812 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* * *
33109851 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
33109891 ACCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33109916 AACGAGTATC
Statistics
Matches: 125, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
39 48 0.38
40 64 0.51
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:33109868 original size:79 final size:80
Alignment explanation
Indices: 33109732--33109915 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
33109722 TTGAATGATG
* *
33109732 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
33109796 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
33109811 TTCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
*
33109874 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* * *
33109891 ACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
33109916 AACGAGTATC
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 70 0.78
80 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:33109922 original size:79 final size:78
Alignment explanation
Indices: 33109785--33109948 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 78
33109775 GGACTAAGAT
* * **
33109785 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT-TACTA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTAT-CTA
*
33109849 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* * *
33109864 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCGAAGGCATTTGAACGAGTATCTA
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAGCCCGAAGGCATTTGAACGAGTATCTA
* *
33109928 TATCCGGTTAAATT
65 AATCCGGTTAAATC
33109942 CCGAAGG
1 CCGAAGG
33109949 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
78 16 0.22
79 56 0.77
80 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTATCTAA
ATCCGGTTAAATC
Found at i:33113280 original size:39 final size:40
Alignment explanation
Indices: 33113235--33113406 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
33113225 GCTCCTCGTT
* * *
33113235 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
33113275 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
33113314 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
33113354 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
33113394 CAAATGCCTTCGG
1 CAAATGCCTTCGG
33113407 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:33113335 original size:40 final size:39
Alignment explanation
Indices: 33113237--33113459 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
33113227 TCCTCGTTCA
* * * *
33113237 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33113276 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33113315 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33113355 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33113395 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33113436 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33113460 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33113419 original size:80 final size:79
Alignment explanation
Indices: 33113235--33113459 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
33113225 GCTCCTCGTT
* * * * *
33113235 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
33113299 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
33113314 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
33113379 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
33113394 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
33113458 GA
63 GA
33113460 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:33113468 original size:41 final size:41
Alignment explanation
Indices: 33113391--33113468 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33113381 TTTGTATCTC
* * *
33113391 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33113432 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33113469 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33121273 original size:40 final size:40
Alignment explanation
Indices: 33121173--33121342 Score: 218
Period size: 40 Copynumber: 4.3 Consensus size: 40
33121163 GCTCCTCGTT
* * *
33121173 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
33121213 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
33121252 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
33121292 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
33121332 CAAATGCCTTC
1 CAAATGCCTTC
33121343 CGATCTTAGT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:33121357 original size:80 final size:79
Alignment explanation
Indices: 33121173--33121397 Score: 213
Period size: 80 Copynumber: 2.8 Consensus size: 79
33121163 GCTCCTCGTT
* * * * * * *
33121173 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGCGACTTAACCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
33121237 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
33121252 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGCGACTTAACCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
33121317 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
** * * * *
33121332 CAAATGCCTTC-CGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGCGA-CTTAACCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
33121396 GA
63 GA
33121398 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 38 0.31
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGCGACTTAACCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:33123116 original size:105 final size:108
Alignment explanation
Indices: 33122929--33123121 Score: 311
Period size: 105 Copynumber: 1.8 Consensus size: 108
33122919 GGCTGTCACA
* * *
33122929 CAATGTTTTACGTTTGGTAATTCGAGGAAACGTGCCCTAATGTGTTGGGTTTCGATTTTTCTCGT
1 CAATGTTCTACGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGA-TTTTCTCGT
33122994 TCAACCAAATAGCCAAATATCCTTCCAAAAATTTCAAAATAAGG
65 TCAACCAAATAGCCAAATATCCTTCCAAAAATTTCAAAATAAGG
*
33123038 CAATGTTCTGCGTTTGGAAATTCGAGG-AACGTGCCCTAATGTGCT-GGTTTCGA-TTTCTCGTT
1 CAATGTTCTACGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCTCGTT
*
33123100 TAACCAAATAGCCAAATATCCT
66 CAACCAAATAGCCAAATATCCT
33123122 CTTAAATTTT
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
105 30 0.38
107 8 0.10
108 17 0.22
109 24 0.30
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (108 bp):
CAATGTTCTACGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCTCGTT
CAACCAAATAGCCAAATATCCTTCCAAAAATTTCAAAATAAGG
Found at i:33124731 original size:49 final size:48
Alignment explanation
Indices: 33124603--33124744 Score: 185
Period size: 49 Copynumber: 2.9 Consensus size: 48
33124593 GTACATGCAT
* * *
33124603 GCTCATACGAGCTATGAATCGGTATGCTCTCACGAGCTGTAAATCGGTAA
1 GCTCATACGAGCTA-GAATCAGTATGCTCTCACGAGCTG-CAATCAGTAA
* * *
33124653 GCTCATACAAGGTTAGAATTAGTATGCTCTCACGAGCTGCAATCAGTAA
1 GCTCATACGA-GCTAGAATCAGTATGCTCTCACGAGCTGCAATCAGTAA
*
33124702 GCTCATACGAGCTGAGAATCAGTAAGCTCTCACGAGCTGCAAT
1 GCTCATACGAGCT-AGAATCAGTATGCTCTCACGAGCTGCAAT
33124745 TGGTAATCCC
Statistics
Matches: 80, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
48 2 0.03
49 44 0.55
50 31 0.39
51 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (48 bp):
GCTCATACGAGCTAGAATCAGTATGCTCTCACGAGCTGCAATCAGTAA
Found at i:33124740 original size:25 final size:25
Alignment explanation
Indices: 33124609--33124740 Score: 112
Period size: 25 Copynumber: 5.3 Consensus size: 25
33124599 GCATGCTCAT
* *
33124609 ACGAGCT-ATGAATCGGTATGCTCTC
1 ACGAGCTGA-GAATCAGTAAGCTCTC
*
33124634 ACGAGCTGTA-AATCGGTAAGCTCAT-
1 ACGAGCTG-AGAATCAGTAAGCTC-TC
* * * * *
33124659 ACAAGGTTAGAATTAGTATGCTCTC
1 ACGAGCTGAGAATCAGTAAGCTCTC
*
33124684 ACGAGCTG-CAATCAGTAAGCTCAT-
1 ACGAGCTGAGAATCAGTAAGCTC-TC
33124708 ACGAGCTGAGAATCAGTAAGCTCTC
1 ACGAGCTGAGAATCAGTAAGCTCTC
33124733 ACGAGCTG
1 ACGAGCTG
33124741 CAATTGGTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
24 22 0.26
25 61 0.72
26 1 0.01
27 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.24
Consensus pattern (25 bp):
ACGAGCTGAGAATCAGTAAGCTCTC
Found at i:33128521 original size:31 final size:31
Alignment explanation
Indices: 33128425--33128521 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 31
33128415 GTGAGTAATA
* * *
33128425 GTGGTGGAATGTGTTATATGTGGAAGCATTT
1 GTGGTGAAATATGTTATATGTGGAAGCCTTT
*** * *
33128456 GTGGTTGTTCTTTGTT-TCATGT--AAGCCTTA
1 GTGG-TGAAATATGTTAT-ATGTGGAAGCCTTT
33128486 GTGGTGAAATATGTTATATGTGGAAGCCTTT
1 GTGGTGAAATATGTTATATGTGGAAGCCTTT
33128517 GTGGT
1 GTGGT
33128522 TATTCCCTAT
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
29 11 0.22
30 11 0.22
31 17 0.34
32 11 0.22
ACGTcount: A:0.20, C:0.07, G:0.31, T:0.42
Consensus pattern (31 bp):
GTGGTGAAATATGTTATATGTGGAAGCCTTT
Found at i:33128538 original size:61 final size:61
Alignment explanation
Indices: 33128423--33128538 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 61
33128413 ATGTGAGTAA
* * * ** * *
33128423 TAGTGGTGGAATGTGTTATATGTGGAAGCATTTGTGGTTGTTCTTTGTTTCATGTAAGCCT
1 TAGTGGTGAAATATGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGTAAGCCT
*
33128484 TAGTGGTGAAATATGTTATATGTGGAAGCCTTTGTGGTTATTCCCTATTACATGT
1 TAGTGGTGAAATATGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGT
33128539 GAACCTTTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 47 1.00
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.43
Consensus pattern (61 bp):
TAGTGGTGAAATATGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGTAAGCCT
Found at i:33128556 original size:61 final size:61
Alignment explanation
Indices: 33128436--33128556 Score: 138
Period size: 61 Copynumber: 2.0 Consensus size: 61
33128426 TGGTGGAATG
* ** * * * *
33128436 TGTTATATGTGGAAGCATTTGTGGTTGTTCTTTGTTTCATGTAAGCCTTAGTGGTGAAATA
1 TGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGTAAGCCTTAGTAGAGAAATA
*
33128497 TGTTATATGTGGAAGCCTTTGTGGTTATTCCCTATTACATGTGAA-CCTTTA-TAGAGAAAT
1 TGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGT-AAGCC-TTAGTAGAGAAAT
33128557 CATTAAGGAG
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
61 45 0.90
62 5 0.10
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.42
Consensus pattern (61 bp):
TGTTATATGTGGAAGCATTTGTGGTTATTCCCTATTACATGTAAGCCTTAGTAGAGAAATA
Found at i:33128648 original size:30 final size:30
Alignment explanation
Indices: 33128609--33128665 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
33128599 TCTAGACCCC
*
33128609 TTTGGGGCTATCTAATGATGTGTGGATGCT
1 TTTGGGGCTATCTAATGATGTATGGATGCT
* *
33128639 TTTGTGGCTATCTAATGGTGTATGGAT
1 TTTGGGGCTATCTAATGATGTATGGAT
33128666 ACCTCTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.18, C:0.09, G:0.32, T:0.42
Consensus pattern (30 bp):
TTTGGGGCTATCTAATGATGTATGGATGCT
Found at i:33128677 original size:30 final size:30
Alignment explanation
Indices: 33128614--33128682 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
33128604 ACCCCTTTGG
* * * * *
33128614 GGCTATCTAATGATGTGTGGATGCTTTTGT
1 GGCTATCTAATGATGTATGGATACCTCTAT
*
33128644 GGCTATCTAATGGTGTATGGATACCTCTAT
1 GGCTATCTAATGATGTATGGATACCTCTAT
33128674 GGCTATCTA
1 GGCTATCTA
33128683 TGTAAAGTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.20, C:0.14, G:0.26, T:0.39
Consensus pattern (30 bp):
GGCTATCTAATGATGTATGGATACCTCTAT
Found at i:33132443 original size:60 final size:61
Alignment explanation
Indices: 33132352--33132498 Score: 210
Period size: 61 Copynumber: 2.5 Consensus size: 61
33132342 GCTAAATCTA
* * *
33132352 TTATATAT-G-AGCCATTGTGGTTGTTCTCTGTTTCATGTGAGCC-TAGTAGCAAAATGTG
1 TTATATATGGAAGCCTTTGTGGTTGTTCTCTGTTTCATGCGAGCCTTAGTAGCAAAATATG
* * *
33132410 TTATATATGGAAGCCTTTGTGGTTGTTTTCTGTTTCATGCGAGCCTTAGTGGCAGAATATG
1 TTATATATGGAAGCCTTTGTGGTTGTTCTCTGTTTCATGCGAGCCTTAGTAGCAAAATATG
*
33132471 TTATATATGGAAGCCTTTGTGGCTGTTC
1 TTATATATGGAAGCCTTTGTGGTTGTTC
33132499 CCTATTACAT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
58 8 0.10
59 1 0.01
60 31 0.40
61 38 0.49
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (61 bp):
TTATATATGGAAGCCTTTGTGGTTGTTCTCTGTTTCATGCGAGCCTTAGTAGCAAAATATG
Found at i:33133436 original size:26 final size:26
Alignment explanation
Indices: 33133377--33133436 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
33133367 TTTTCTTTTC
** *
33133377 TTTTTCTTTTCATTTTTAGTTTAGGT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
*
33133403 TTTCTCTTTT-ATTTTTAGAGTAGAT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
33133428 TTTATTCTT
1 TTT-TTCTT
33133437 GTAGTTTTCT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.15, C:0.08, G:0.10, T:0.67
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAGAGTAGAT
Found at i:33135099 original size:19 final size:19
Alignment explanation
Indices: 33135075--33135112 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33135065 TTATCATACT
33135075 TTTATTTTTAAGAATTTAA
1 TTTATTTTTAAGAATTTAA
33135094 TTTATTTTTAAGAATTTAA
1 TTTATTTTTAAGAATTTAA
33135113 CTCCTCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTATTTTTAAGAATTTAA
Found at i:33146204 original size:9 final size:9
Alignment explanation
Indices: 33146187--33146223 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
33146177 TGAGTTTTCG
33146187 AATTCGAAT
1 AATTCGAAT
*
33146196 AACTCGAAT
1 AATTCGAAT
33146205 AATTCGAAT
1 AATTCGAAT
33146214 AATTCGAAT
1 AATTCGAAT
33146223 A
1 A
33146224 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:33165195 original size:37 final size:35
Alignment explanation
Indices: 33165154--33165260 Score: 89
Period size: 32 Copynumber: 3.1 Consensus size: 35
33165144 TAATAATATT
33165154 TTAATACTTCAATATTAAATTTAATTTAATACTTATC
1 TTAATACTT-AATATT-AATTTAATTTAATACTTATC
* ** *
33165191 TTAATAGTATTTTATTAATTTAATATTAA-AGTTA--
1 TTAATACT-TAATATTAATTTAAT-TTAATACTTATC
*
33165225 TT-AT-CTTAATATTTAATTTAATTTAATATTTATC
1 TTAATACTTAATA-TTAATTTAATTTAATACTTATC
33165259 TT
1 TT
33165261 GTACATAAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
31 7 0.12
32 15 0.27
33 2 0.04
34 4 0.07
36 12 0.21
37 15 0.27
38 1 0.02
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (35 bp):
TTAATACTTAATATTAATTTAATTTAATACTTATC
Found at i:33165227 original size:20 final size:19
Alignment explanation
Indices: 33165202--33165254 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
33165192 TAATAGTATT
33165202 TTATTAATTTAATATTAAA
1 TTATTAATTTAATATTAAA
*
33165221 GTTATT-ATCTTAATATTTAA
1 -TTATTAAT-TTAATATTAAA
33165241 -T-TTAATTTAATATT
1 TTATTAATTTAATATT
33165255 TATCTTGTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 10 0.33
18 3 0.10
19 2 0.07
20 15 0.50
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTATTAATTTAATATTAAA
Found at i:33169210 original size:26 final size:26
Alignment explanation
Indices: 33169174--33169225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33169164 ATTGCCAGAA
*
33169174 GGTTTTGATC-TTCAAATAAAATAGTT
1 GGTTTTGATCTTTC-AAGAAAATAGTT
33169200 GGTTTTGATCTTTCAAGAAAATAGTT
1 GGTTTTGATCTTTCAAGAAAATAGTT
33169226 TTTCTCTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.42
Consensus pattern (26 bp):
GGTTTTGATCTTTCAAGAAAATAGTT
Found at i:33176439 original size:51 final size:50
Alignment explanation
Indices: 33176355--33176480 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 50
33176345 CGGATATCCG
* * * *
33176355 GTGGCCTGCACATAGTACCAC-CTTTGTTGCCAAAGCTACCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTTG-TACCAAAACTACC-TATTCACAAA
** * *
33176406 GTGGGTTTCACATAGTACCACACTTATG-ACCAAAACTATCTATTCTCAAA
1 GTGGCCTTCACATAGTACCACACTT-TGTACCAAAACTACCTATTCACAAA
33176456 GTGGCCTTCACATAGTACCACACTT
1 GTGGCCTTCACATAGTACCACACTT
33176481 GAGCCACTAG
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
50 31 0.49
51 27 0.43
52 3 0.05
53 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (50 bp):
GTGGCCTTCACATAGTACCACACTTTGTACCAAAACTACCTATTCACAAA
Found at i:33180025 original size:50 final size:50
Alignment explanation
Indices: 33179913--33180038 Score: 177
Period size: 50 Copynumber: 2.5 Consensus size: 50
33179903 GGATATCCGA
*
33179913 TGGCCTGCACATAGTACCAC-CTTTGTTGCCAAAGCTACCTTCTTCACAAAG
1 TGGCCTTCACATAGTACCACAC-TTGTTGCCAAAGCTA-CTTCTTCACAAAG
*
33179964 TGGCCTTCACATAGTACCACACTTG-TGACCAAAGCTA-TGTCTTCTCAAAG
1 TGGCCTTCACATAGTACCACACTTGTTG-CCAAAGCTACT-TCTTCACAAAG
33180014 TGGCCTTCACATAGTACCACACTTG
1 TGGCCTTCACATAGTACCACACTTG
33180039 AGCCATTAGT
Statistics
Matches: 70, Mismatches: 2, Indels: 7
0.89 0.03 0.09
Matches are distributed among these distances:
49 1 0.01
50 37 0.53
51 31 0.44
52 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (50 bp):
TGGCCTTCACATAGTACCACACTTGTTGCCAAAGCTACTTCTTCACAAAG
Found at i:33184801 original size:40 final size:40
Alignment explanation
Indices: 33184726--33184837 Score: 111
Period size: 40 Copynumber: 2.8 Consensus size: 40
33184716 ATAAACGCCA
* * *
33184726 CTAAAAATCAAGCATTAGCGGCGCTTTTATAAAAACACAT
1 CTAAAAGTCAAGCATTAGCGGCGCTTTTAGAAAAACACAG
* * * *
33184766 CTAAAGGTCAAGCATTAGCGGCGCCTTTT-GGAAAACGCCG
1 CTAAAAGTCAAGCATTAGCGGCG-CTTTTAGAAAAACACAG
* * *
33184806 CTAAAAGT-AAGCAATAGCGGCGTTTTTTGAAA
1 CTAAAAGTCAAGCATTAGCGGCGCTTTTAGAAA
33184838 GGCGCCGCAA
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
38 4 0.07
39 16 0.27
40 34 0.58
41 5 0.08
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
CTAAAAGTCAAGCATTAGCGGCGCTTTTAGAAAAACACAG
Found at i:33184834 original size:39 final size:40
Alignment explanation
Indices: 33184720--33184851 Score: 99
Period size: 40 Copynumber: 3.3 Consensus size: 40
33184710 TGGATAATAA
* * * * *
33184720 ACGCCACTAAAAATCAAGCATTAGCGGCG-CTTTTATAAAA
1 ACGCCGCTAAAAGTCAAGCAATAGCGGCGCCTTTT-GAAAG
* ** * *
33184760 ACACATCTAAAGGTCAAGCATTAGCGGCGCCTTTTGGAAA-
1 ACGCCGCTAAAAGTCAAGCAATAGCGGCGCCTTTT-GAAAG
**
33184800 ACGCCGCTAAAAGT-AAGCAATAGCGGCGTTTTTTGAAAG
1 ACGCCGCTAAAAGTCAAGCAATAGCGGCGCCTTTTGAAAG
* *
33184839 GCGCCGCAAAAAG
1 ACGCCGCTAAAAG
33184852 CCTAAGCCCA
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
38 4 0.05
39 28 0.38
40 34 0.46
41 8 0.11
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (40 bp):
ACGCCGCTAAAAGTCAAGCAATAGCGGCGCCTTTTGAAAG
Found at i:33184941 original size:41 final size:41
Alignment explanation
Indices: 33184886--33185019 Score: 216
Period size: 41 Copynumber: 3.3 Consensus size: 41
33184876 TGAGTTTTTG
* * *
33184886 GGGCATTTAACGGCGTTTTTGAAAAAGCGCCGCTAATGCTT
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
33184927 GGGCCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
33184968 GGGCCTTTAGCGGCGTTTTT-AGAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGA-AAAAGCGCCGCTAATGCTC
33185009 GGGCCTTTAGC
1 GGGCCTTTAGC
33185020 CACTAATGCT
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 1 0.01
41 86 0.99
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:33185063 original size:63 final size:63
Alignment explanation
Indices: 33184959--33185082 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 63
33184949 GAAAGCGCCG
33184959 CTAATGCTCGGGCCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCCA
1 CTAATGCTCGGGCCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCCA
* *
33185022 CTAATGCTCGGGCCTTTAGTGGCGTTTTT-GAAAAAGTGCCGCTAATGCTCGGGCCTTTAGC
1 CTAATGCTCGGGCCTTTAGCGGCGTTTTTAG-AAAAGCGCCGCTAATGCTCGGGCCTTTAGC
33185083 GACGTTTTTG
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
62 1 0.02
63 57 0.98
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.29
Consensus pattern (63 bp):
CTAATGCTCGGGCCTTTAGCGGCGTTTTTAGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCCA
Found at i:33185079 original size:41 final size:41
Alignment explanation
Indices: 33185017--33185149 Score: 205
Period size: 41 Copynumber: 3.2 Consensus size: 41
33185007 TCGGGCCTTT
* *
33185017 AGCCACTAATGCTCGGGCCTTTAGTGGCGTTTTTGAAAAAG
1 AGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAG
* *
33185058 TGCCGCTAATGCTCGGGCCTTTAGCGACGTTTTTGAAAAAG
1 AGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAG
*
33185099 AGCCGCTAATACTCGGGCCTTTAGCGGCGTTTTTGAAAAAG
1 AGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAG
33185140 CA-CCGCTAAT
1 -AGCCGCTAAT
33185150 AATAATAAAT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 83 0.99
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (41 bp):
AGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAG
Found at i:33185098 original size:104 final size:104
Alignment explanation
Indices: 33184918--33185123 Score: 333
Period size: 104 Copynumber: 2.0 Consensus size: 104
33184908 AAAAGCGCCG
* * *
33184918 CTAATGCTTGGGCCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCG
1 CTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGACG
* *
33184983 TTTTTAGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCCA
66 TTTTTAGAAAAGAGCCGCTAATACTCGGGCCTTTAGCCA
* *
33185022 CTAATGCTCGGGCCTTTAGTGGCGTTTTTGAAAAAGTGCCGCTAATGCTCGGGCCTTTAGCGACG
1 CTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGACG
33185087 TTTTT-GAAAAAGAGCCGCTAATACTCGGGCCTTTAGC
66 TTTTTAG-AAAAGAGCCGCTAATACTCGGGCCTTTAGC
33185124 GGCGTTTTTG
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
103 1 0.01
104 93 0.99
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (104 bp):
CTAATGCTCGGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGACG
TTTTTAGAAAAGAGCCGCTAATACTCGGGCCTTTAGCCA
Found at i:33185649 original size:14 final size:14
Alignment explanation
Indices: 33185630--33185663 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
33185620 GTTTATGGGT
33185630 TTAGGGGTTAA-ATG
1 TTAGGGGTTAAGA-G
33185644 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
33185658 TTAGGG
1 TTAGGG
33185664 ATTTAAGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:33185874 original size:21 final size:22
Alignment explanation
Indices: 33185839--33185956 Score: 82
Period size: 21 Copynumber: 5.4 Consensus size: 22
33185829 ATTTTAAGGT
*
33185839 TTAGGGA-TTATGGTTTAGGGG
1 TTAGGGATTTAAGGTTTAGGGG
33185860 TT-GGGATTTAAGGTTTAGGGG
1 TTAGGGATTTAAGGTTTAGGGG
* * *
33185881 TTAGGGGTTTAAGGGTTAAGCGCG
1 TTAGGGATTTAA-GGTTTAG-GGG
* * * *
33185905 TTAGGGGTTAAAAG-TTAGGGA
1 TTAGGGATTTAAGGTTTAGGGG
* * *
33185926 TTATGGA-TTAAGGATTTAAGGT
1 TTAGGGATTTAAGG-TTTAGGGG
33185948 TTAGGGATT
1 TTAGGGATT
33185957 CAAGAGTCGG
Statistics
Matches: 74, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
20 8 0.11
21 23 0.31
22 22 0.30
23 8 0.11
24 13 0.18
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.36
Consensus pattern (22 bp):
TTAGGGATTTAAGGTTTAGGGG
Found at i:33188439 original size:118 final size:118
Alignment explanation
Indices: 33188316--33188550 Score: 470
Period size: 118 Copynumber: 2.0 Consensus size: 118
33188306 CACCTATGGC
33188316 CTGTTGTAGATGTTTTTTCTGTTTAAGACGAGATTAACAAGTTATTTCTCCTTCTAGTATTAGAG
1 CTGTTGTAGATGTTTTTTCTGTTTAAGACGAGATTAACAAGTTATTTCTCCTTCTAGTATTAGAG
33188381 ATTGTATGGGGTGGTGAGATGTGCTTGGTAACTTTAGATTTGAGATAACTTTT
66 ATTGTATGGGGTGGTGAGATGTGCTTGGTAACTTTAGATTTGAGATAACTTTT
33188434 CTGTTGTAGATGTTTTTTCTGTTTAAGACGAGATTAACAAGTTATTTCTCCTTCTAGTATTAGAG
1 CTGTTGTAGATGTTTTTTCTGTTTAAGACGAGATTAACAAGTTATTTCTCCTTCTAGTATTAGAG
33188499 ATTGTATGGGGTGGTGAGATGTGCTTGGTAACTTTAGATTTGAGATAACTTT
66 ATTGTATGGGGTGGTGAGATGTGCTTGGTAACTTTAGATTTGAGATAACTTT
33188551 ACCAGTCTTA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.43
Consensus pattern (118 bp):
CTGTTGTAGATGTTTTTTCTGTTTAAGACGAGATTAACAAGTTATTTCTCCTTCTAGTATTAGAG
ATTGTATGGGGTGGTGAGATGTGCTTGGTAACTTTAGATTTGAGATAACTTTT
Found at i:33190310 original size:43 final size:41
Alignment explanation
Indices: 33190263--33190574 Score: 327
Period size: 43 Copynumber: 7.3 Consensus size: 41
33190253 GAACCGTACT
*
33190263 TTTAGCGACGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTG-T-AAAGCGCCGCTAAAGATCATGTTC
* *
33190306 TTTAGGGGCGTTTGTTGGTAAAGTGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTG-T-GTAAAGCGCCGCTAAAGATCATGTTC
*
33190349 TTTAGCGGCGTTTGTGTGTAAAGCGCCGCTAAAAATCATGTTC
1 TTTAGCGGCG-TT-TGTGTAAAGCGCCGCTAAAGATCATGTTC
* * * *
33190392 TTTAACGACGATTTTTGTAAAGCGCCGCTAAAAATCATGTTC
1 TTTAGCGGCG-TTTGTGTAAAGCGCCGCTAAAGATCATGTTC
* * * * *
33190434 TTTAACGACGATTTTTGTAAAGCGCCGCTAAAGGTAATGTTC
1 TTTAGCGGCG-TTTGTGTAAAGCGCCGCTAAAGATCATGTTC
* * *
33190476 TTTAGCGGTGTTTGTGGGTAAAGCGCCGCTAAAGTTCTTGTTC
1 TTTAGCGGCGTTTGT--GTAAAGCGCCGCTAAAGATCATGTTC
* * * * *
33190519 TTTAGCGGTGTTTGTGGGTAAAGTGCCACTAAAGAACATGATC
1 TTTAGCGGCGTTTGT--GTAAAGCGCCGCTAAAGATCATGTTC
33190562 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
33190575 TTTCACATAA
Statistics
Matches: 236, Mismatches: 27, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
41 4 0.02
42 74 0.31
43 150 0.64
44 5 0.02
45 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTGTGTAAAGCGCCGCTAAAGATCATGTTC
Found at i:33190489 original size:127 final size:128
Alignment explanation
Indices: 33190282--33190522 Score: 351
Period size: 127 Copynumber: 1.9 Consensus size: 128
33190272 GTTTGTGATA
* ** * * *
33190282 AAAGCGCCGCTAAAGATCATGTTCTTTAGGGGCGTTTGTTGGTAAAGTGCCGCTAAAGATCATGT
1 AAAGCGCCGCTAAAAATCATGTTCTTTAACGACGTTTGTTGGTAAAGCGCCGCTAAAGATAATGT
*
33190347 TCTTTAGCGGCGTTTGTGTGTAAAGCGCCGCTAAAAATCATGTTCTTTAACGACGATTTTTGT
66 TCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAATCATGTTCTTTAACGACGATTTTTGT
*
33190410 AAAGCGCCGCTAAAAATCATGTTCTTTAACGACGATTT-TT-GTAAAGCGCCGCTAAAGGTAATG
1 AAAGCGCCGCTAAAAATCATGTTCTTTAACGACG-TTTGTTGGTAAAGCGCCGCTAAAGATAATG
* ** *
33190473 TTCTTTAGCGGTGTTTGTGGGTAAAGCGCCGCTAAAGTTCTTGTTCTTTA
65 TTCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAATCATGTTCTTTA
33190523 GCGGTGTTTG
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
127 65 0.65
128 32 0.32
129 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (128 bp):
AAAGCGCCGCTAAAAATCATGTTCTTTAACGACGTTTGTTGGTAAAGCGCCGCTAAAGATAATGT
TCTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAAAAATCATGTTCTTTAACGACGATTTTTGT
Found at i:33203091 original size:24 final size:24
Alignment explanation
Indices: 33203059--33203105 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
33203049 AAAACAAAAG
33203059 CTAAGGTGAGTAATTACTAAATAA
1 CTAAGGTGAGTAATTACTAAATAA
33203083 CTAAGGTGAGTAATTACTAAATA
1 CTAAGGTGAGTAATTACTAAATA
33203106 TTTATCCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (24 bp):
CTAAGGTGAGTAATTACTAAATAA
Found at i:33205245 original size:92 final size:90
Alignment explanation
Indices: 33205134--33205317 Score: 305
Period size: 92 Copynumber: 2.0 Consensus size: 90
33205124 TATGATACAT
33205134 TAGGTCAAATTAGTAATAATACCGAAAGAAATTTATTACCTTACATAACCTAGGATTAATGTGAT
1 TAGGTCAAATTAGTAATAATACCGAAAGAAATTTATTACCTTACATAACCTAGGATTAATGTGAT
*
33205199 TAAATTGTTTTAGTATATAAATATCAC
66 TAAATTGTTTCA--ATATAAATATCAC
* * *
33205226 TAGGTCAAATTAGTAATAATATCGAAAGAAATTTATTACCTTGCATAACGTAGGATTAATGTGAT
1 TAGGTCAAATTAGTAATAATACCGAAAGAAATTTATTACCTTACATAACCTAGGATTAATGTGAT
*
33205291 TAAATTGTTTCAATATATATATCAC
66 TAAATTGTTTCAATATAAATATCAC
33205316 TA
1 TA
33205318 TTACCTCACT
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
90 14 0.16
92 73 0.84
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.36
Consensus pattern (90 bp):
TAGGTCAAATTAGTAATAATACCGAAAGAAATTTATTACCTTACATAACCTAGGATTAATGTGAT
TAAATTGTTTCAATATAAATATCAC
Found at i:33208200 original size:23 final size:21
Alignment explanation
Indices: 33208152--33208199 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
33208142 TGCAATTGAG
33208152 GCACACGCCTGTGTGGAAGAA
1 GCACACGCCTGTGTGGAAGAA
*
33208173 GCACACGTCTGTGTGGAAGAA
1 GCACACGCCTGTGTGGAAGAA
33208194 GCACAC
1 GCACAC
33208200 AACCGTATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.31, T:0.15
Consensus pattern (21 bp):
GCACACGCCTGTGTGGAAGAA
Found at i:33208210 original size:21 final size:21
Alignment explanation
Indices: 33208165--33208210 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
33208155 CACGCCTGTG
** * *
33208165 TGGAAGAAGCACACGTCTGTG
1 TGGAAGAAGCACACAACCGTA
33208186 TGGAAGAAGCACACAACCGTA
1 TGGAAGAAGCACACAACCGTA
33208207 TGGA
1 TGGA
33208211 GGAGATACAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.30, T:0.15
Consensus pattern (21 bp):
TGGAAGAAGCACACAACCGTA
Found at i:33208527 original size:12 final size:12
Alignment explanation
Indices: 33208510--33208538 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
33208500 CACACGCCCA
33208510 TGTGGCCACCTG
1 TGTGGCCACCTG
33208522 TGTGGCCACCTG
1 TGTGGCCACCTG
33208534 TGTGG
1 TGTGG
33208539 TCACGAAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.28, G:0.38, T:0.28
Consensus pattern (12 bp):
TGTGGCCACCTG
Found at i:33215883 original size:14 final size:13
Alignment explanation
Indices: 33215839--33215891 Score: 54
Period size: 15 Copynumber: 3.8 Consensus size: 13
33215829 TAAATCTAGC
33215839 AATCTAAAATTCAAA
1 AATCT-AAATTC-AA
33215854 AATCT-AATTCAA
1 AATCTAAATTCAA
*
33215866 AATCTAAAGTTGAA
1 AATCTAAA-TTCAA
33215880 AATCCTAAATTC
1 AAT-CTAAATTC
33215892 TAAGAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 7 0.21
13 7 0.21
14 9 0.27
15 10 0.30
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (13 bp):
AATCTAAATTCAA
Found at i:33216122 original size:36 final size:38
Alignment explanation
Indices: 33216057--33216136 Score: 146
Period size: 36 Copynumber: 2.2 Consensus size: 38
33216047 TAACTTCTAA
33216057 AAACTTAACATTTACATAAAAAAAATTAAAATAAAAAC
1 AAACTTAACATTTACATAAAAAAAATTAAAATAAAAAC
33216095 AAACTT-ACATTTACAT-AAAAAAATTAAAATAAAAAC
1 AAACTTAACATTTACATAAAAAAAATTAAAATAAAAAC
33216131 AAACTT
1 AAACTT
33216137 TTTTCTAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.62
37 10 0.24
38 6 0.14
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (38 bp):
AAACTTAACATTTACATAAAAAAAATTAAAATAAAAAC
Found at i:33216555 original size:19 final size:18
Alignment explanation
Indices: 33216510--33216555 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
33216500 AAAATCAATC
33216510 AAATAAATTAAATAAAAGA
1 AAATAAA-TAAATAAAAGA
**
33216529 AACCAAATAAGATAAAAGA
1 AAATAAATAA-ATAAAAGA
33216548 AAATAAAT
1 AAATAAAT
33216556 TTGTGAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.17
Consensus pattern (18 bp):
AAATAAATAAATAAAAGA
Found at i:33219838 original size:21 final size:21
Alignment explanation
Indices: 33219811--33219860 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
33219801 GTCCACGCCC
*
33219811 AAAATA-AATTAA-AATAAAT
1 AAAATATAATTAATAAAAAAT
33219830 AAAATATAATTAATAAAAAAT
1 AAAATATAATTAATAAAAAAT
33219851 AAAATA-AATT
1 AAAATATAATT
33219861 GGGTTACCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 6 0.21
20 10 0.36
21 12 0.43
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATATAATTAATAAAAAAT
Found at i:33220848 original size:16 final size:16
Alignment explanation
Indices: 33220823--33220866 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
33220813 ATTTAGTTAA
* *
33220823 TTTCTCTTGAGTATAT
1 TTTCTTTTGAATATAT
33220839 TTTCTTTTGAATATAT
1 TTTCTTTTGAATATAT
33220855 TTT-TTTT-AATAT
1 TTTCTTTTGAATAT
33220867 GATCATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 5 0.19
15 4 0.15
16 17 0.65
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.64
Consensus pattern (16 bp):
TTTCTTTTGAATATAT
Found at i:33224815 original size:23 final size:23
Alignment explanation
Indices: 33224797--33224841 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
33224787 AGCTAATTTT
33224797 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
33224820 TTCTAAATATTATCACTAAATA
1 TTCTAAATATTATCACTAAATA
33224842 TTATCACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:33224817 original size:13 final size:13
Alignment explanation
Indices: 33224799--33224877 Score: 98
Period size: 13 Copynumber: 6.5 Consensus size: 13
33224789 CTAATTTTTT
33224799 CTAAATATTATCA
1 CTAAATATTATCA
*
33224812 CTAAATA--AT-T
1 CTAAATATTATCA
33224822 CTAAATATTATCA
1 CTAAATATTATCA
33224835 CTAAATATTATCA
1 CTAAATATTATCA
*
33224848 CTAAATA--AT-T
1 CTAAATATTATCA
33224858 CTAAATATTATCA
1 CTAAATATTATCA
33224871 CTAAATA
1 CTAAATA
33224878 ATTCAAAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
10 14 0.25
11 4 0.07
12 4 0.07
13 34 0.61
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:33224839 original size:36 final size:36
Alignment explanation
Indices: 33224799--33224877 Score: 158
Period size: 36 Copynumber: 2.2 Consensus size: 36
33224789 CTAATTTTTT
33224799 CTAAATATTATCACTAAATAATTCTAAATATTATCA
1 CTAAATATTATCACTAAATAATTCTAAATATTATCA
33224835 CTAAATATTATCACTAAATAATTCTAAATATTATCA
1 CTAAATATTATCACTAAATAATTCTAAATATTATCA
33224871 CTAAATA
1 CTAAATA
33224878 ATTCAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (36 bp):
CTAAATATTATCACTAAATAATTCTAAATATTATCA
Found at i:33224861 original size:23 final size:23
Alignment explanation
Indices: 33224835--33224886 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
33224825 AATATTATCA
33224835 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
33224858 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
33224881 CAAAAT
1 CTAAAT
33224887 TTAAAAATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:33232736 original size:13 final size:13
Alignment explanation
Indices: 33232712--33232745 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
33232702 CAAAAAGGTT
*
33232712 GAAAGTAAAAAAAG
1 GAAAG-AAAAAAAA
33232726 GAAAGAAAAAAAA
1 GAAAGAAAAAAAA
33232739 GAAAGAA
1 GAAAGAA
33232746 TTTATTAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (13 bp):
GAAAGAAAAAAAA
Done.