Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 128 of 213
Found at i:37277380 original size:79 final size:82
Alignment explanation
Indices: 37277244--37277428 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
37277234 TTGAATGATG
* *
37277244 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
*
37277308 TGTACGAGATACTA-AT
66 TGTACGAGATACTATAA
* * * **
37277324 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
* *
37277386 TTGTGCGAGTTACTATAA
65 TTGTACGAGATACTATAA
*
37277404 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
37277429 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.61
80 34 0.38
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTACGAGATACTATAA
Found at i:37277442 original size:40 final size:40
Alignment explanation
Indices: 37277244--37277435 Score: 203
Period size: 40 Copynumber: 4.8 Consensus size: 40
37277234 TTGAATGATG
* * * * *
37277244 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
* * *
37277284 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
*
37277324 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
* * *
37277363 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
37277404 T-CGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
37277436 AGCTATATCC
Statistics
Matches: 128, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 34 0.27
40 84 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:37277450 original size:79 final size:79
Alignment explanation
Indices: 37277297--37277461 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
37277287 GGACTAAGAT
* * **
37277297 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
37277362 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
37277376 CCGAAGGCAATTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
37277439 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
37277455 CCGAAGG
1 CCGAAGG
37277462 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 46 0.63
80 27 0.37
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:37284256 original size:37 final size:37
Alignment explanation
Indices: 37284206--37284284 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37284196 TTATTATGAA
* *
37284206 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37284243 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37284280 GTCTT
1 GTCTT
37284285 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37284481 original size:47 final size:47
Alignment explanation
Indices: 37284403--37284939 Score: 923
Period size: 47 Copynumber: 11.4 Consensus size: 47
37284393 CCCTTCGAGA
* * * * * *
37284403 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37284450 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37284497 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37284544 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37284591 CTTATCACATAT-TACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37284637 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
37284684 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37284731 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37284780 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37284827 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37284874 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37284921 CTTATCACATATATACACT
1 CTTATCACATATATACACT
37284940 GTCTTGGCTG
Statistics
Matches: 467, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 46 0.10
47 375 0.80
49 46 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37284600 original size:22 final size:22
Alignment explanation
Indices: 37284572--37284646 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
37284562 TTTCACATTC
37284572 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** *** *
37284594 ATCACATATTACACTTTCACATT
1 ATCACATCGGCCA-TTAGGCCTT
37284617 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
37284640 ATCACAT
1 ATCACAT
37284647 ATATACACTT
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 16 0.46
23 10 0.29
24 9 0.26
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.31
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:37288798 original size:40 final size:40
Alignment explanation
Indices: 37288768--37288977 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
37288758 GGACTAAGAT
* * * **
37288768 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
37288808 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
37288848 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
37288888 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
37288928 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
37288967 CCGAAGGCATT
1 CCGAAGGCATT
37288978 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:37294436 original size:47 final size:44
Alignment explanation
Indices: 37294380--37294541 Score: 148
Period size: 47 Copynumber: 3.5 Consensus size: 44
37294370 CTATAAAAAG
*
37294380 TATAAAAATATGTGTGTATATATATACATATTTTAAAATTATTAAA
1 TATAAAAA-ATGTATGTATATATATA-ATATTTTAAAATTATTAAA
* * *
37294426 TATAACAAATATATATGTATATATATAA-ATTATAAAATATATTTATA
1 TATAA-AAA-ATGTATGTATATATATAATATTTTAAAAT-TA-TTAAA
* * ** *
37294473 TGTTACAAGAATGTATGTATGCATAT-ATATTTTAAAATTATAAAA
1 T-ATA-AAAAATGTATGTATATATATAATATTTTAAAATTATTAAA
*
37294518 TATAAAAAACGTATGTATATATAT
1 TATAAAAAATGTATGTATATATAT
37294542 GGATCATAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
43 16 0.17
44 2 0.02
45 13 0.14
46 11 0.12
47 46 0.49
48 4 0.04
49 1 0.01
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (44 bp):
TATAAAAAATGTATGTATATATATAATATTTTAAAATTATTAAA
Found at i:37294603 original size:21 final size:21
Alignment explanation
Indices: 37294563--37294603 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37294553 CACGTGTATG
* *
37294563 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
37294584 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
37294604 TTTGGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:37296260 original size:115 final size:115
Alignment explanation
Indices: 37296054--37296289 Score: 305
Period size: 115 Copynumber: 2.1 Consensus size: 115
37296044 CTCCTTCCAA
* * **
37296054 TCCACTGTGTCTTGTTGCTGCAATCCACTCCACTGCACTTCAGAGAGATATGACTTGTAGTTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* * * *
37296119 ATGCAGTCTGCTGTAACTTTAAGGGGATGAGATTTGTGGTTTTAGTCTAC
66 ATGCAGTCTGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
* *
37296169 TCCACTGTGTCTCGTTGCTTCAATCCACTCTACTACACTTCAGAGAGATATGACTTGTAACTTCA
1 TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
* * * * *
37296234 AT-C-TTCTTTGCAGCAACTTCAGGGGGACGAGATTTTTGGTTTTAGTGTGC
66 ATGCAGTC--TGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
37296284 TCCACT
1 TCCACT
37296290 ACAACATCAG
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
113 2 0.02
114 1 0.01
115 101 0.97
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (115 bp):
TCCACTGTGTCTCGTTGCTGCAATCCACTCCACTACACTTCAGAGAGATATGACTTGTAACTTCA
ATGCAGTCTGCAGCAACTTCAAGGGGACGAGATTTGTGGTTTTAGTCTAC
Found at i:37296631 original size:225 final size:225
Alignment explanation
Indices: 37296381--37296820 Score: 711
Period size: 225 Copynumber: 2.0 Consensus size: 225
37296371 AGTCTACTCT
* *
37296381 ACTGCAACTTCAGGGAGATAAGACTTGCATATTCAACCTGTCCCACTACAACTTCA-GAGGGATA
1 ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATG-GGGATA
* *
37296445 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAATGTTTGATATGATCTACTCT
65 AGGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCT
* ** * * *
37296510 ATTGCATTTTCAGAGAGATGAGATTTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGT
130 ACTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGG
37296575 GAAATAAGATTTGCTATCTTTAATTTGCTCC
195 GAAATAAGATTTGCTATCTTTAATTTGCTCC
* * * * *
37296606 ACTGCAACTTTAGGGAGATAAGACTTATATCTTCAACTTGCCCCACTTCAACTTCATGGGGATAA
1 ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATGGGGATAA
* *
37296671 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTTAGAGAGATAAAGTTTGATATGATCTACGCTA
66 GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
37296736 CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
131 CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
37296801 AAATAAGATTTGCTATCTTT
196 AAATAAGATTTGCTATCTTT
37296821 CATCTGCTTT
Statistics
Matches: 197, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
225 196 0.99
226 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.35
Consensus pattern (225 bp):
ACTGCAACTTCAGGGAGATAAGACTTACATATTCAACCTGCCCCACTACAACTTCATGGGGATAA
GGTTTGCTACTTCAACCTGCTCTACTGCAACTTCAAAGAGATAAAGTTTGATATGATCTACGCTA
CTGCAACTTCAGAGAAATGAGATCTGTTATTTATAGCTTTAATCTGTTTCACTGCAACTTCAGGG
AAATAAGATTTGCTATCTTTAATTTGCTCC
Found at i:37296714 original size:44 final size:44
Alignment explanation
Indices: 37296377--37296720 Score: 155
Period size: 44 Copynumber: 7.7 Consensus size: 44
37296367 CTTTAGTCTA
* **
37296377 CTCTACTGCAACTTCAGGGAGATAAGACTTGCATA-TTCAACCTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGC-TACTTCAACCTG
* * *
37296421 -TCCCACTACAACTTCAGAGGGATAAGGTTTGCTACTTCAACCTG
1 CT-CTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* * * * * *
37296465 CTCTACTGCAACTTCAAAGAGATAATGTTTGATA--T-GATCTA
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
* ** * ** * *
37296506 CTCTATTGCATTTTCAGAGAGATGAGATTTGTTATTTATAGCTTTAATCTG
1 CTCTACTGCAACTTCAGAGAGAT-A-A---GGT-TTGCTA-CTTCAACCTG
* * * * * **
37296557 -TTTCACTGCAACTTCAGTGAAATAAGATTTGCTATCTTTAATTTG
1 CTCT-ACTGCAACTTCAGAGAGATAAGGTTTGCTA-CTTCAACCTG
* * * ** * *
37296602 CTCCACTGCAACTTTAGGGAGATAAGACTT-ATATCTTCAACTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTA-CTTCAACCTG
* * * *
37296646 CCCCACTTCAACTTCATG-GGGATAAGGTTTGCTACTTCAACCTG
1 CTCTACTGCAACTTCA-GAGAGATAAGGTTTGCTACTTCAACCTG
* *
37296690 CTCTACTGCAACTTTAGAGAGATAAAGTTTG
1 CTCTACTGCAACTTCAGAGAGATAAGGTTTG
37296721 ATATGATCTA
Statistics
Matches: 224, Mismatches: 58, Indels: 36
0.70 0.18 0.11
Matches are distributed among these distances:
41 22 0.10
42 2 0.01
43 5 0.02
44 124 0.55
45 39 0.17
46 4 0.02
47 5 0.02
49 1 0.00
50 4 0.02
51 18 0.08
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (44 bp):
CTCTACTGCAACTTCAGAGAGATAAGGTTTGCTACTTCAACCTG
Found at i:37298416 original size:79 final size:80
Alignment explanation
Indices: 37298305--37298488 Score: 268
Period size: 79 Copynumber: 2.3 Consensus size: 80
37298295 GCTCCTCGTT
* * *
37298305 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGT-ATCTCGCACAAATGCCTTCGGG-CTTAACCC
*
37298368 GGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCA
*
37298385 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGG
*
37298448 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
37298463 CAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37298489 CATCATTCAA
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
78 38 0.40
79 42 0.44
80 15 0.16
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGGCTTAACCCGG
AATTAGTAACTCGCA
Found at i:37298422 original size:39 final size:40
Alignment explanation
Indices: 37298305--37298488 Score: 268
Period size: 39 Copynumber: 4.7 Consensus size: 40
37298295 GCTCCTCGTT
* * *
37298305 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
37298345 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37298385 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37298424 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37298463 CAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37298489 CATCATTCAA
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 76 0.57
40 56 0.42
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37306294 original size:39 final size:40
Alignment explanation
Indices: 37306172--37306394 Score: 339
Period size: 39 Copynumber: 5.7 Consensus size: 40
37306162 GCTCCTCGTT
* *
37306172 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
37306212 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37306252 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37306291 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37306330 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
37306369 CAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37306395 CATCATTCAA
Statistics
Matches: 172, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
39 114 0.66
40 56 0.33
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:37308109 original size:44 final size:44
Alignment explanation
Indices: 37308041--37308288 Score: 259
Period size: 44 Copynumber: 5.6 Consensus size: 44
37308031 ATTCAATATT
37308041 CTTCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTG
1 CTTCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTG
* * *
37308085 CTTCACTGTCAGTACAGGAAGGCAAGATCTGTTAG-CTTC-AGTCTG
1 CTTCGCTGTCAGTACAGGAAGGCAAG-GCTGGT-GTCTTCGA-TCTG
* **
37308130 CTTTGCTGTCAGTACAAAAAGGCAAGGCTGGTGTCTTCGATCTG
1 CTTCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTG
* ** * *
37308174 CTTCACTGTCAGTACAGGAAGGCAAGATTTGTTATCTTC-AGTCTG
1 CTTCGCTGTCAGTACAGGAAGGCAAG-GCTGGTGTCTTCGA-TCTG
* * * * * *
37308219 CTTCGCTGTCAATACAGAAAGACATGGCTGGTATCTTCGATCTA
1 CTTCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTG
* *
37308263 CTTCGCTATCAATACAGGAAGGCAAG
1 CTTCGCTGTCAGTACAGGAAGGCAAG
37308289 ATCTGTTATC
Statistics
Matches: 166, Mismatches: 30, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
43 1 0.01
44 95 0.57
45 69 0.42
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (44 bp):
CTTCGCTGTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATCTG
Found at i:37308152 original size:89 final size:89
Alignment explanation
Indices: 37308001--37308302 Score: 417
Period size: 89 Copynumber: 3.4 Consensus size: 89
37307991 GTCACATTCG
* * * * * * *
37308001 CTGTCAGTAC-GGAAAGACGAGATCTGTTATATTCAATATTCTTCGCTGTCAGTACAGGAAGGCA
1 CTGTCAGTACAGG-AAGGCAAGATCTGTTATCTTCAGTCTGCTTCGCTGTCAGTACAGAAAGGCA
37308065 AGGCTGGTGTCTTCGATCTGCTTCA
65 AGGCTGGTGTCTTCGATCTGCTTCA
* * *
37308090 CTGTCAGTACAGGAAGGCAAGATCTGTTAGCTTCAGTCTGCTTTGCTGTCAGTACAAAAAGGCAA
1 CTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTCGCTGTCAGTACAGAAAGGCAA
37308155 GGCTGGTGTCTTCGATCTGCTTCA
66 GGCTGGTGTCTTCGATCTGCTTCA
* * * *
37308179 CTGTCAGTACAGGAAGGCAAGATTTGTTATCTTCAGTCTGCTTCGCTGTCAATACAGAAAGACAT
1 CTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTCGCTGTCAGTACAGAAAGGCAA
* * *
37308244 GGCTGGTATCTTCGATCTACTTCG
66 GGCTGGTGTCTTCGATCTGCTTCA
* *
37308268 CTATCAATACAGGAAGGCAAGATCTGTTATCTTCA
1 CTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCA
37308303 CTGATCTGTT
Statistics
Matches: 189, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
89 187 0.99
90 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (89 bp):
CTGTCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTCGCTGTCAGTACAGAAAGGCAA
GGCTGGTGTCTTCGATCTGCTTCA
Found at i:37313481 original size:70 final size:71
Alignment explanation
Indices: 37313367--37313579 Score: 297
Period size: 72 Copynumber: 3.0 Consensus size: 71
37313357 CTCAGATTTA
* * *
37313367 AAAAAATGGATCATGCCCAGTAAGTTAGGACACGATAT-TCTCTTAATTCCCGAGATCGTTTAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCT-TCTTAATTCCAGAGATCGTTTAAA
37313431 ACTTGAG
65 ACTTGAG
*
37313438 AAAAAA-GGATCATGCCCAGTAAGTTAGGACACGGTCTCTTCTTAATTCCAGAGATCGTTTTAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCG-TTTAAA
* *
37313502 CCTAT-AA
65 ACT-TGAG
* * *
37313509 AAAAAAGGGATCATGCCCAGTAAATTAGGACATGATCTCTTCTTAATTCCTGAGATCGTTTAAAA
1 AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTAAAA
37313574 CTTGAG
66 CTTGAG
37313580 TTTGAAAAGA
Statistics
Matches: 126, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
70 47 0.37
71 31 0.25
72 48 0.38
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (71 bp):
AAAAAAGGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTAAAA
CTTGAG
Found at i:37313540 original size:72 final size:71
Alignment explanation
Indices: 37313366--37313578 Score: 281
Period size: 70 Copynumber: 3.0 Consensus size: 71
37313356 TCTCAGATTT
* * *
37313366 AAAAAAATGGATCATGCCCAGTAAGTTAGGACACGATAT-TCTCTTAATTCCCGAGATCG-TTTA
1 AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCT-TCTTAATTCCAGAGATCGTTTTA
*
37313429 AAACTTG
65 AACCTTG
* *
37313436 AGAAAAAAGGATCATGCCCAGTAAGTTAGGACACGGTCTCTTCTTAATTCCAGAGATCGTTTTAA
1 AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTAA
37313501 ACCTAT-
66 ACCT-TG
* * *
37313507 AAAAAAAAGGGATCATGCCCAGTAAATTAGGACATGATCTCTTCTTAATTCCTGAGATCG-TTTA
1 AAAAAAAA-GGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTA
*
37313571 AAACTTG
65 AACCTTG
37313578 A
1 A
37313579 GTTTGAAAAG
Statistics
Matches: 126, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
70 53 0.42
71 25 0.20
72 48 0.38
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (71 bp):
AAAAAAAAGGATCATGCCCAGTAAGTTAGGACACGATCTCTTCTTAATTCCAGAGATCGTTTTAA
ACCTTG
Found at i:37314192 original size:21 final size:21
Alignment explanation
Indices: 37314152--37314192 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37314142 CATGTGTATG
* *
37314152 TGTATATATATATTAGAAAAA
1 TGTATATATATATAACAAAAA
*
37314173 TGTATGTATATATAACAAAA
1 TGTATATATATATAACAAAA
37314193 TTTTGAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (21 bp):
TGTATATATATATAACAAAAA
Found at i:37323342 original size:27 final size:26
Alignment explanation
Indices: 37323311--37324039 Score: 719
Period size: 27 Copynumber: 27.3 Consensus size: 26
37323301 AGAGGTCGAT
** *
37323311 AAATGACTAAAATACCCTCGTAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
*
37323338 AAATGACTGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
37323364 AAATGACCAAAATATCCTCATCGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37323391 GAATGACTGAAATACACCCATTGGGTA
1 AAATGACCGAAATAC-CCCATAGGGTA
* * *
37323418 GACTGACCGAAATATCCCCCACAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
* *
37323446 AAATGACCGAAATACCCCCACAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
37323473 CAATGA-CGAAAATACCCCTACTA-GGTA
1 AAATGACCG-AAATACCCC-A-TAGGGTA
*
37323500 GAAAT-ACCAAAATACCCCCATAGGGTA
1 -AAATGACCGAAATA-CCCCATAGGGTA
* *
37323527 GAATGACCGAAATACCCTATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
37323553 AATTGACCGAAATATCCCATAGGATA
1 AAATGACCGAAATACCCCATAGGGTA
*
37323579 AAATGACTGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37323606 AAATTACTGAAATATACCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37323633 AAATGACCAAAATACCCTATAGAGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * * *
37323659 GAATGACCAAAATATCTCTATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
37323686 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
* * * *
37323713 AAATAATCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
*
37323740 AAATGACAGAAATA-CCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
37323765 AAATGACCAAAATATGCCCCGTAGGGTA
1 AAATGACCGAAATA--CCCCATAGGGTA
*
37323793 AAATAACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* * *
37323820 GAATGACCGAAATACCCCTTAAGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* *
37323846 AAATGACTGAAATACCCCCATAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
* *
37323873 AAATGACCGAAATAACCCTATAGGATA
1 AAATGACCGAAAT-ACCCCATAGGGTA
*
37323900 AAATGACCGAAATACCCTATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
*
37323926 GAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
*
37323953 AAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* *
37323980 AAATAACCGAAATACCCCCATACGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
*
37324007 AAATGACCGAAATACCCCATGGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
37324033 AAATGAC
1 AAATGAC
37324040 TATTATACCC
Statistics
Matches: 588, Mismatches: 90, Indels: 49
0.81 0.12 0.07
Matches are distributed among these distances:
25 20 0.03
26 169 0.29
27 342 0.58
28 56 0.10
29 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (26 bp):
AAATGACCGAAATACCCCATAGGGTA
Found at i:37323376 original size:53 final size:53
Alignment explanation
Indices: 37323311--37324039 Score: 724
Period size: 53 Copynumber: 13.6 Consensus size: 53
37323301 AGAGGTCGAT
** * *
37323311 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * * *
37323364 AAATGACCAAAATATCCTCATCGGGTAGAATGACTGAAATACACCCATTGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTA
* * * * * *
37323418 GACTGACCGAAATATCCCCCACAGGGTAAAATGACCGAAATACCCCCACAAGGTA
1 AAATGACCGAAATA-CCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* *
37323473 CAATGA-CGAAAATACCC-CTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTA
1 AAATGACCG-AAATACCCTC-A-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTA
* * * *
37323527 GAATGACCGAAATACCCT-ATAGGGTAAATTGACCGAAATATCCCATAGGATA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * *
37323579 AAATGACTGAAATACCCCCATAGGGTAAAATTACTGAAATATACCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * * *
37323633 AAATGACCAAAATACCCT-ATAGAGTAGAATGACCAAAATATCTCTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * *
37323686 AAATGACTGAAATACCC-CTATAGGGTAAAATAATCAAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTC-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTA
* * *
37323740 AAATGACAGAAATA-CC-CATAGGGTAAAATGACCAAAATATGCCCCGTAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA--CCCCATAGGGTA
* * * * *
37323793 AAATAACCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* * * * *
37323846 AAATGACTGAAATACCCCCATAAGGTAAAATGACCGAAATAACCCTATAGGATA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAAT-ACCCCATAGGGTA
*
37323900 AAATGACCGAAATACCCT-ATAGGGTAGAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCC-ATAGGGTA
* * *
37323953 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGGTA
1 AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
*
37324007 AAATGACCGAAATACCC-CATGGGGTAAAATGAC
1 AAATGACCGAAATACCCTCATAGGGTAAAATGAC
37324040 TATTATACCC
Statistics
Matches: 566, Mismatches: 86, Indels: 48
0.81 0.12 0.07
Matches are distributed among these distances:
52 54 0.10
53 239 0.42
54 202 0.36
55 70 0.12
56 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (53 bp):
AAATGACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
Found at i:37323664 original size:80 final size:79
Alignment explanation
Indices: 37323311--37324039 Score: 729
Period size: 80 Copynumber: 9.1 Consensus size: 79
37323301 AGAGGTCGAT
** * * *
37323311 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAATACCCCATAGGGTAAAATGACCAAAA
1 AAATGACCGAAATACCCT-ATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
* *
37323376 TATCCTCATCGGGTA
65 TATCCCCATAGGGTA
* * * * * * *
37323391 GAATGACTGAAATACACCCATTGGGTAGACTGACCGAAATATCCCCCACAGGGTAAAATGACCGA
1 AAATGACCGAAATAC-CCTATAGGGTAAAATGACCGAAATA--CCCCATAGGGTAAAATGACCGA
* * *
37323456 AATACCCCCACAAGGTA
63 AATATCCCCATAGGGTA
* * *
37323473 CAATGA-CGAAAATACCCCTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTAGAATGACC
1 AAATGACCG-AAATA-CCCTA-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTAAAATGACC
*
37323535 GAAATA-CCCTATAGGGTA
61 GAAATATCCCCATAGGGTA
* * * * *
37323553 AATTGACCGAAATATCCC-ATAGGATAAAATGACTGAAATACCCCCATAGGGTAAAATTACTGAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAA
*
37323617 ATATACCCATAGGGTA
64 ATATCCCCATAGGGTA
* * * * * * *
37323633 AAATGACCAAAATACCCTATAGAGTAGAATGACCAAAATATCTCTATAGGGTAAAATGACTGAAA
1 AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAAA
37323698 TA-CCCCTATAGGGTA
65 TATCCCC-ATAGGGTA
* * * * *
37323713 AAATAATCAAAATACCCTTATAGGGTAAAATGACAGAAATA-CCCATAGGGTAAAATGACCAAAA
1 AAATGACCGAAATACCC-TATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
*
37323777 TATGCCCCGTAGGGTA
65 TAT-CCCCATAGGGTA
* * * * * *
37323793 AAATAACCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTAAAATGACTGAAA
1 AAATGACCGAAATA-CCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
* *
37323858 TACCCCCATAAGGTA
65 TATCCCCATAGGGTA
* * *
37323873 AAATGACCGAAATAACCCTATAGGATAAAATGACCGAAATACCCTATAGGGTAGAATGACCGAAA
1 AAATGACCGAAAT-ACCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAA
37323938 TA-CCCCTATAGGGTA
65 TATCCCC-ATAGGGTA
* *
37323953 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGGTAAAATGACCGAA
1 AAATGACCGAAATACCC-TATAGGGTAAAATGACCGAAATA-CCCCATAGGGTAAAATGACCGAA
*
37324018 ATA-CCCCATGGGGTA
64 ATATCCCCATAGGGTA
37324033 AAATGAC
1 AAATGAC
37324040 TATTATACCC
Statistics
Matches: 538, Mismatches: 89, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
78 6 0.01
79 70 0.13
80 296 0.55
81 105 0.20
82 57 0.11
83 4 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (79 bp):
AAATGACCGAAATACCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACCGAAAT
ATCCCCATAGGGTA
Found at i:37324080 original size:107 final size:106
Alignment explanation
Indices: 37323311--37324039 Score: 643
Period size: 107 Copynumber: 6.8 Consensus size: 106
37323301 AGAGGTCGAT
** ** * * * *
37323311 AAATGACTAAAATACCCTCGTAGGGTAAAATGACTGAAAT-ACCCCATAGGGTAAAATGACCAAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * * * *
37323375 ATATCCTCATCGGGTAGAATGACTGAAATACACCCATTGGGTA
66 ATA-CCCCATAGGGTAAAATGACCGAAATAC-CCCATAGGGTA
* * ** * * * * *
37323418 GACTGACCGAAATATCCCCCACAGGGTAAAATGACCGAAATACCCCCACAAGG-TACAATGA-CG
1 AAATGACCGAAATA-CCCTTATAGGGTAAAATAACCGAAATAACCCCA-TAGGATAAAATGACCG
*
37323481 AAAATACCCCTACTA-GGTAGAAAT-ACCAAAATACCCCCATAGGGTA
64 -AAATACCCC-A-TAGGGTA-AAATGACCGAAATA-CCCCATAGGGTA
* * * * *
37323527 GAATGACCGAAATACCC-TATAGGGTAAATTGACCGAAAT-ATCCCATAGGATAAAATGACTGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * *
37323590 ATACCCCCATAGGGTAAAATTACTGAAATATACCCATAGGGTA
66 ATA-CCCCATAGGGTAAAATGACCGAAATA-CCCCATAGGGTA
* * * * * * * * * *
37323633 AAATGACCAAAATACCC-TATAGAGTAGAATGACCAAAATATCTCTATAGGGTAAAATGACTGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* * * *
37323697 ATACCCCTATAGGGTAAAATAATCAAAATACCCTTATAGGGTA
66 ATACCCC-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTA
* * * * * * *
37323740 AAATGACAGAAATACCC--ATAGGGTAAAATGACCAAAATATGCCCCGTAGGGTAAAATAACCGA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATA-ACCCCATAGGATAAAATGACCGA
* * *
37323803 AATACCCCCATAGGGTAGAATGACCGAAATACCCCTTAAGGTA
65 AATA-CCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
* ** * * *
37323846 AAATGACTGAAATACCCCCATAAGGTAAAATGACCGAAATAACCCTATAGGATAAAATGACCGAA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
* *
37323911 ATACCCTATAGGGTAGAATGACCGAAATACCCCTATAGGGTA
66 ATACCCCATAGGGTAAAATGACCGAAATACCCC-ATAGGGTA
*
37323953 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATACCCCCATACGG-TAAAATGACCGA
1 AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATA-GGATAAAATGACCGA
*
37324017 AATACCCCATGGGGTAAAATGAC
65 AATACCCCATAGGGTAAAATGAC
37324040 TATTATACCC
Statistics
Matches: 514, Mismatches: 86, Indels: 44
0.80 0.13 0.07
Matches are distributed among these distances:
105 9 0.02
106 149 0.29
107 241 0.47
108 55 0.11
109 52 0.10
110 8 0.02
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (106 bp):
AAATGACCGAAATACCCTTATAGGGTAAAATAACCGAAATAACCCCATAGGATAAAATGACCGAA
ATACCCCATAGGGTAAAATGACCGAAATACCCCATAGGGTA
Found at i:37326210 original size:18 final size:18
Alignment explanation
Indices: 37326189--37326229 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
37326179 TTTTGTTTTC
* *
37326189 TTTCATTATTTTTTTCCT
1 TTTCAATATATTTTTCCT
*
37326207 TTTCAATATATTTTTCTT
1 TTTCAATATATTTTTCCT
37326225 TTTCA
1 TTTCA
37326230 CATGCTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTCAATATATTTTTCCT
Found at i:37328610 original size:30 final size:30
Alignment explanation
Indices: 37328571--37328649 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
37328561 ATAAAATAGC
*
37328571 ATCAAGCTCAATGAGCTAAGATT-GAGTTGA
1 ATCAAGCTCAATGAGCTAA-ATTCGAGCTGA
* *
37328601 ATTAAGCTCAATGAACTGAAATTCGAGCTGA
1 ATCAAGCTCAATGAGCT-AAATTCGAGCTGA
* *
37328632 ATCAAGCTCCATAAGCTA
1 ATCAAGCTCAATGAGCTA
37328650 GGATCTAGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 19 0.47
31 21 0.52
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (30 bp):
ATCAAGCTCAATGAGCTAAATTCGAGCTGA
Found at i:37328639 original size:31 final size:30
Alignment explanation
Indices: 37328571--37328640 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
37328561 ATAAAATAGC
* *
37328571 ATCAAGCTCAATGAGCTAAGATTGAGTTGA
1 ATCAAGCTCAATGAACTAAGATTGAGCTGA
*
37328601 ATTAAGCTCAATGAACTGAA-ATTCGAGCTGA
1 ATCAAGCTCAATGAACT-AAGATT-GAGCTGA
37328632 ATCAAGCTC
1 ATCAAGCTC
37328641 CATAAGCTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 18 0.53
31 16 0.47
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (30 bp):
ATCAAGCTCAATGAACTAAGATTGAGCTGA
Found at i:37330606 original size:27 final size:27
Alignment explanation
Indices: 37330570--37331015 Score: 394
Period size: 27 Copynumber: 16.8 Consensus size: 27
37330560 TGAGGTCAAT
* * * *
37330570 AAATGACCAAAACACCCCCGTAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
37330597 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* ** * *
37330624 GAATGATTGAAATACCCTAATAGGGGA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
37330651 GAATGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * *
37330678 AAATGACCTAAATACCC-CTATATGTTA
1 AAATGACCGAAATACCCTC-ATAGGGTA
*
37330705 GAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * * *
37330732 GAATGACTGAAATACCCTCGTAAGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
37330759 AATTGACTGAAATACCCT-ATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* *
37330785 AATTGACCGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
**
37330812 AAATGACTAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
37330839 AAATGATCGAAATACCC-CAATAGGGTA
1 AAATGACCGAAATACCCTC-ATAGGGTA
* *
37330866 GAATGACCGAAATAATCC-CATAGGGT-
1 AAATGACCGAAAT-ACCCTCATAGGGTA
*
37330892 AAAT----GAAATACTAC-CATAGGGT-
1 AAATGACCGAAATAC-CCTCATAGGGTA
*
37330914 AAATGACTGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* **
37330941 AAATAACAAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * * * *
37330968 AAATGATCAAAATACCCCCATACGGTC
1 AAATGACCGAAATACCCTCATAGGGTA
* *
37330995 AAATGTCTGAAATACCC-CATA
1 AAATGACCGAAATACCCTCATA
37331016 TTCATTGGAT
Statistics
Matches: 350, Mismatches: 57, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.00
22 18 0.05
25 1 0.00
26 46 0.13
27 279 0.80
28 5 0.01
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.21
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCATAGGGTA
Found at i:37330908 original size:22 final size:22
Alignment explanation
Indices: 37330874--37330919 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
37330864 TAGAATGACC
*
37330874 GAAATAATCCCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
*
37330896 GAAATACTACCATAGGGTAAAT
1 GAAATAATACCATAGGGTAAAT
37330918 GA
1 GA
37330920 CTGAAATACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.22
Consensus pattern (22 bp):
GAAATAATACCATAGGGTAAAT
Found at i:37330954 original size:75 final size:76
Alignment explanation
Indices: 37330830--37330969 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 76
37330820 AAAATACCCT
* * ** *
37330830 CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAGAATGACCGAAATAATCC-CATAGGGTAA
1 CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAAAATAACAAAAAT-ACCCTCATAGGGTAA
37330894 ATGAAATACTAC
65 ATGAAATACTAC
37330906 CATAGGGT-AAATGA-CTGAAATACCCTC-ATAGGGTAAAATAACAAAAATACCCTCATAGGGTA
1 CATAGGGTAAAATGATC-GAAATACCC-CAATAGGGTAAAATAACAAAAATACCCTCATAGGGTA
37330968 AA
64 AA
37330970 ATGATCAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
74 4 0.07
75 43 0.77
76 9 0.16
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (76 bp):
CATAGGGTAAAATGATCGAAATACCCCAATAGGGTAAAATAACAAAAATACCCTCATAGGGTAAA
TGAAATACTAC
Found at i:37330981 original size:102 final size:104
Alignment explanation
Indices: 37330804--37330999 Score: 265
Period size: 102 Copynumber: 1.9 Consensus size: 104
37330794 AAATACCCTT
* * *
37330804 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCAATAGGGTAGAA
1 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAACAAAATACCCCAATAGGGTAAAA
* * *
37330869 TGACCGAAATAATCCCATAGGGT-AAATGAAATACTACC
66 TGACCAAAATAACCCCATACGGTCAAATGAAATACTACC
*
37330907 ATAGGGT-AAATGACTGAAATACCCTCATAGGGTAAAAT-AACAAAAATACCCTC-ATAGGGTAA
1 ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAAC-AAAATACCC-CAATAGGGTAA
* *
37330969 AATGATCAAAATACCCCCATACGGTCAAATG
64 AATGACCAAAATAACCCCATACGGTCAAATG
37331000 TCTGAAATAC
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 2 0.02
102 66 0.81
103 13 0.16
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.20
Consensus pattern (104 bp):
ATAGGGTAAAATGACTAAAATACCCTCATAGGGTAAAATGAACAAAATACCCCAATAGGGTAAAA
TGACCAAAATAACCCCATACGGTCAAATGAAATACTACC
Found at i:37346802 original size:42 final size:42
Alignment explanation
Indices: 37346743--37346829 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
37346733 TAGGTTTTCA
37346743 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
1 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
37346785 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
1 TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
37346827 TTT
1 TTT
37346830 ATTGTTTCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.16, C:0.16, G:0.09, T:0.59
Consensus pattern (42 bp):
TTTGTTTTTGCTTTTTTATTGTTTCTATACGCATTCTAACAC
Found at i:37353493 original size:27 final size:27
Alignment explanation
Indices: 37353463--37353640 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37353453 ATATTGAGTC
* * * *
37353463 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37353490 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37353517 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37353545 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37353572 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37353599 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37353626 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37353641 GTACAATTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37353602 original size:82 final size:81
Alignment explanation
Indices: 37353484--37353639 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37353474 TGCTATATAA
* *
37353484 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37353549 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37353566 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37353630 CACTTAGTGC
65 CACTTAGTGC
37353640 TGTACAATTC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37353652 original size:82 final size:83
Alignment explanation
Indices: 37353463--37353652 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 83
37353453 ATATTGAGTC
* * * * *
37353463 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
37353527 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
37353545 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
37353606 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
37353626 CGCACACTTAGTGCTGTACAATTCAAT
1 CGCACACTTAGTGCTGTACAATTCAAT
37353653 CCCGCGCACT
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 69 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:37358342 original size:39 final size:40
Alignment explanation
Indices: 37358138--37358360 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
37358128 TTGAATGCTG
* * * * * *
37358138 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
37358178 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
37358218 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
37358258 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
37358298 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
37358337 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37358361 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:37358380 original size:79 final size:80
Alignment explanation
Indices: 37358213--37358395 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
37358203 GTGCGAGATA
* * *
37358213 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
37358278 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
37358293 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
37358357 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
37358372 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
37358396 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:37363712 original size:39 final size:40
Alignment explanation
Indices: 37363507--37363730 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
37363497 ATTGAATGCT
* * * * * *
37363507 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATAT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAA
** * * *
37363547 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA
*
37363587 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
**
37363627 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
* *
37363667 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
* * *
37363706 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
37363731 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 119 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:37363750 original size:79 final size:80
Alignment explanation
Indices: 37363583--37363765 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
37363573 GTGCGAGATA
* * *
37363583 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
37363648 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
37363663 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
37363727 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
37363742 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
37363766 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:37367318 original size:21 final size:21
Alignment explanation
Indices: 37367292--37367354 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
37367282 TTGGTATTTG
37367292 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37367313 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37367334 GGTATTTGGTAC-AAATTGGTA
1 GG-AATTGGTACGAAA-TGGTA
37367355 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37367323 original size:11 final size:11
Alignment explanation
Indices: 37367303--37367335 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37367293 GAATTGGTAC
37367303 GAAATGGTATG
1 GAAATGGTATG
*
37367314 GAATTGGTAT-
1 GAAATGGTATG
37367324 GAAATGGTATG
1 GAAATGGTATG
37367335 G
1 G
37367336 TATTTGGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (11 bp):
GAAATGGTATG
Found at i:37368447 original size:10 final size:10
Alignment explanation
Indices: 37368432--37368473 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37368422 TTTGCAAGTT
37368432 TTGAGCTAAA
1 TTGAGCTAAA
* *
37368442 TTGAGCTGAT
1 TTGAGCTAAA
*
37368452 TTGAGCT-CA
1 TTGAGCTAAA
37368461 TTGAGCTAAA
1 TTGAGCTAAA
37368471 TTG
1 TTG
37368474 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37371467 original size:18 final size:19
Alignment explanation
Indices: 37371432--37371486 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
37371422 TCTCGCTCTC
*
37371432 TTTTCATTCTCTTTTTTTGAA
1 TTTTCATT-TC-TTTTTTCAA
*
37371453 TTTT-ATTTCTTTTTTCAT
1 TTTTCATTTCTTTTTTCAA
*
37371471 TTTTCTTTTCTTTTTT
1 TTTTCATTTCTTTTTT
37371487 ATTTTCGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 11 0.37
19 12 0.40
20 3 0.10
21 4 0.13
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (19 bp):
TTTTCATTTCTTTTTTCAA
Found at i:37371480 original size:19 final size:19
Alignment explanation
Indices: 37371458--37371506 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
37371448 TTGAATTTTA
37371458 TTTCTTTTTTCATTTT-TCT
1 TTTCTTTTTT-ATTTTCTCT
37371477 TTTCTTTTTTATTTTCGCTCT
1 TTTCTTTTTTATTTT--CTCT
37371498 TTTCTTTTT
1 TTTCTTTTT
37371507 CTCTCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.19
19 10 0.37
21 12 0.44
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTCTTTTTTATTTTCTCT
Found at i:37373864 original size:40 final size:39
Alignment explanation
Indices: 37373773--37373994 Score: 203
Period size: 40 Copynumber: 5.6 Consensus size: 39
37373763 TCCTCGTTCA
* * * * *
37373773 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
37373812 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
37373851 GAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * *
37373891 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * ** *
37373930 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
37373971 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37373995 CAGCATTCAA
Statistics
Matches: 152, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 70 0.46
40 74 0.49
41 8 0.05
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:37373874 original size:79 final size:79
Alignment explanation
Indices: 37373771--37373941 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
37373761 GCTCCTCGTT
* * * * *
37373771 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACCATGCCTTCGGGACGTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
37373836 TTTAACAACTCGCA
66 TTTAACAACTCGCA
* * * *
37373850 CGAATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACAATGCCCTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
** *
37373915 TTTAGTATCTCGCA
66 TTTAACAACTCGCA
*
37373929 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
37373942 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGCTTTAATAACTCACACAATGCCCTCGGGACGTAACCCGGA
TTTAACAACTCGCA
Found at i:37376872 original size:17 final size:17
Alignment explanation
Indices: 37376816--37376874 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
37376806 AACCGTATAC
37376816 AATTTTTTTT-TCTTTCA
1 AATTTTTTTTGT-TTTCA
*
37376833 AATTTTTTTTCTTTT--
1 AATTTTTTTTGTTTTCA
37376848 --TTTGTTTTTGTTTTCA
1 AATTT-TTTTTGTTTTCA
37376864 AATTTTTTTTG
1 AATTTTTTTTG
37376875 AACTCTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
13 3 0.09
14 9 0.26
17 19 0.54
18 4 0.11
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.75
Consensus pattern (17 bp):
AATTTTTTTTGTTTTCA
Found at i:37376887 original size:31 final size:30
Alignment explanation
Indices: 37376818--37376887 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
37376808 CCGTATACAA
*
37376818 TTTTTTTTTCTTTCAAATTTTTTTT--CTTT
1 TTTTTTTTTCTTTCAAATTTTTTTTAAC-TC
*
37376847 TTTTGTTTTTGTTTTCAAATTTTTTTTGAACTC
1 TTTT-TTTTT-CTTTCAAATTTTTTTT-AACTC
37376880 TTTTTTTT
1 TTTTTTTT
37376888 ACGTACCTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
29 4 0.12
30 5 0.15
31 15 0.44
32 4 0.12
33 5 0.15
34 1 0.03
ACGTcount: A:0.11, C:0.09, G:0.04, T:0.76
Consensus pattern (30 bp):
TTTTTTTTTCTTTCAAATTTTTTTTAACTC
Found at i:37377212 original size:21 final size:21
Alignment explanation
Indices: 37377186--37377248 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
37377176 TTGGTATTTG
37377186 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37377207 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
37377228 GGTATTTGGTAC-AAATTGGTA
1 GG-AATTGGTACGAAA-TGGTA
37377249 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.32, C:0.03, G:0.32, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:37377217 original size:11 final size:11
Alignment explanation
Indices: 37377197--37377229 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
37377187 GAATTGGTAC
37377197 GAAATGGTATG
1 GAAATGGTATG
*
37377208 GAATTGGTAT-
1 GAAATGGTATG
37377218 GAAATGGTATG
1 GAAATGGTATG
37377229 G
1 G
37377230 TATTTGGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (11 bp):
GAAATGGTATG
Found at i:37378342 original size:10 final size:10
Alignment explanation
Indices: 37378327--37378368 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
37378317 TTTGCAAGTT
37378327 TTGAGCTAAA
1 TTGAGCTAAA
* *
37378337 TTGAGCTGAT
1 TTGAGCTAAA
*
37378347 TTGAGCT-CA
1 TTGAGCTAAA
37378356 TTGAGCTAAA
1 TTGAGCTAAA
37378366 TTG
1 TTG
37378369 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:37382113 original size:52 final size:51
Alignment explanation
Indices: 37381984--37382115 Score: 142
Period size: 50 Copynumber: 2.6 Consensus size: 51
37381974 ATGTGTTTTG
* * * *
37381984 CATTTAATAAAGTCATGCATTATGTAACTCTCATGCTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGCTAATTAAGTTTGCAT
* * * * *
37382035 CA-CAAATTATA-ACATGCATTATGTAACTCCCATGTTAATTAAATTTTGCCT
1 CATTAAATTA-AGTCATGCATTATGTAACTCCCATGCTAATT-AAGTTTGCAT
*
37382086 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
37382116 ATTTGTTCAT
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
50 29 0.45
51 14 0.22
52 22 0.34
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGCTAATTAAGTTTGCAT
Found at i:37382770 original size:18 final size:18
Alignment explanation
Indices: 37382733--37382771 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37382723 ATTGAAAAGA
*
37382733 AAACTCAAAGAGAATTTT
1 AAACTCAAAGAGAATGTT
37382751 AAACTCAAAAGAGAA-GTT
1 AAACTC-AAAGAGAATGTT
37382769 AAA
1 AAA
37382772 TAATAATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.10, G:0.13, T:0.21
Consensus pattern (18 bp):
AAACTCAAAGAGAATGTT
Found at i:37384034 original size:36 final size:36
Alignment explanation
Indices: 37383976--37384045 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
37383966 GAGGTTCAAG
* * *
37383976 GAAGCCATTACGGGTCTCATTGATCGAGTTTGGGGA
1 GAAGCCATTACGGGGCTCATTGATCAAGCTTGGGGA
* * *
37384012 GAAGCTATTATGGGGCTTATTGATCAAGCTTGGG
1 GAAGCCATTACGGGGCTCATTGATCAAGCTTGGG
37384046 CATGCACTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.14, G:0.33, T:0.30
Consensus pattern (36 bp):
GAAGCCATTACGGGGCTCATTGATCAAGCTTGGGGA
Found at i:37387563 original size:40 final size:40
Alignment explanation
Indices: 37387511--37388022 Score: 812
Period size: 40 Copynumber: 12.8 Consensus size: 40
37387501 ATAACCACAA
* * * * *
37387511 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
* *
37387551 GCACGAATGCCTTCGGGTCTTAGCTCGGATATATCAACTT-
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA-TTC
* *
37387591 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAGTTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
*
37387631 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAGTTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
*
37387671 GCACAAATGCCTTCGGGTCTTATCCCGGATATATCAACTT-
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA-TTC
* *
37387711 GCACAATTGCCTTCAGGTCTTAGCCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
* *
37387751 GCACAAATGCCTTCGAGTCTTAACCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
* * *
37387791 ACACAAATGCCTTCAGGTCTTAACCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
37387831 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
*
37387871 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
*
37387911 GCACAAATGCCTTCGGGTCTTAACCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
37387951 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
37387991 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
37388023 CATTCAAATG
Statistics
Matches: 439, Mismatches: 29, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
39 4 0.01
40 432 0.98
41 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAATTC
Found at i:37393584 original size:17 final size:18
Alignment explanation
Indices: 37393562--37393609 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
37393552 TCTTTCTGAG
37393562 TTCATTTATCTTT-CTTT
1 TTCATTTATCTTTACTTT
*
37393579 TTCATTTACCTTTACTTT
1 TTCATTTATCTTTACTTT
*
37393597 TTCATTTTTCTTT
1 TTCATTTATCTTT
37393610 TCTTGATCAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (18 bp):
TTCATTTATCTTTACTTT
Found at i:37393598 original size:18 final size:17
Alignment explanation
Indices: 37393562--37393603 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
37393552 TCTTTCTGAG
*
37393562 TTCATTTATCTTTCTTT
1 TTCATTTACCTTTCTTT
37393579 TTCATTTACCTTTACTTT
1 TTCATTTACCTTT-CTTT
37393597 TTCATTT
1 TTCATTT
37393604 TTCTTTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCATTTACCTTTCTTT
Found at i:37408190 original size:35 final size:35
Alignment explanation
Indices: 37408128--37408196 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 35
37408118 TTAATTAATC
* *
37408128 AGCTTTGACAATTGAAGTCCCCAAACAGTCATTGG
1 AGCTTTGACAATTAAAGTCCCCAAACAGCCATTGG
* * * *
37408163 AGCTTTGTCAATTAAAGTTCTCGAACAGCCATTG
1 AGCTTTGACAATTAAAGTCCCCAAACAGCCATTG
37408197 AGGTGGACTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (35 bp):
AGCTTTGACAATTAAAGTCCCCAAACAGCCATTGG
Found at i:37410626 original size:18 final size:18
Alignment explanation
Indices: 37410603--37410637 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37410593 TCACTTTCTT
*
37410603 TTTCTTTATCATTTTTTC
1 TTTCTTGATCATTTTTTC
37410621 TTTCTTGATCATTTTTT
1 TTTCTTGATCATTTTTT
37410638 TCCCTTACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.14, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTCTTGATCATTTTTTC
Found at i:37416928 original size:27 final size:27
Alignment explanation
Indices: 37416887--37417134 Score: 331
Period size: 27 Copynumber: 9.2 Consensus size: 27
37416877 ACTTGATGGC
* *
37416887 TAAAATTATCAAAATACCCTCAAAAGG
1 TAAAATTACCAAAATACCCTCAAAGGG
*
37416914 TAAAATTACCGAAATACCCTCGAAA-GG
1 TAAAATTACCAAAATACCCTC-AAAGGG
* **
37416941 TAAAAGTACC-AAATACCCTTGAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
* *
37416967 TAAAATTATCGAAATACCCTCAAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
*
37416994 TAAAATTATCAAAATACCCTCAAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
37417021 TAAAATTACCAAAATACCCAT-AAAGGG
1 TAAAATTACCAAAATACCC-TCAAAGGG
*
37417048 TAAAATTACCAAAATACCCTCGAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
* * *
37417075 AAAAATTACCGAAATACCCTGAAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
*
37417102 TAAAATTACCAAAATACCCCCAAAGGG
1 TAAAATTACCAAAATACCCTCAAAGGG
37417129 TAAAAT
1 TAAAAT
37417135 AACTGTTATA
Statistics
Matches: 196, Mismatches: 20, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
25 2 0.01
26 20 0.10
27 170 0.87
28 4 0.02
ACGTcount: A:0.48, C:0.20, G:0.13, T:0.19
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCAAAGGG
Found at i:37421278 original size:25 final size:25
Alignment explanation
Indices: 37421236--37421294 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
37421226 TTGGGTTGTG
*
37421236 TGCTGACGCAAGAAGGTAAGGTGAT
1 TGCTGATGCAAGAAGGTAAGGTGAT
* *
37421261 TGCTGATGCAGGAGGGTAAGGTGAT
1 TGCTGATGCAAGAAGGTAAGGTGAT
*
37421286 TGCTTATGC
1 TGCTGATGC
37421295 GTCTCGTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.25, C:0.12, G:0.37, T:0.25
Consensus pattern (25 bp):
TGCTGATGCAAGAAGGTAAGGTGAT
Found at i:37424313 original size:197 final size:196
Alignment explanation
Indices: 37423973--37424335 Score: 618
Period size: 197 Copynumber: 1.8 Consensus size: 196
37423963 ATTGTATTTG
37423973 CAATGTACTTACTTAATTCTAAATAGCTCTGATACCAAATGATGCGATCTCGTATTCAATGGTTG
1 CAATGTACTTACTTAATTCTAAATAGCTCTGATACCAAATGATGCGATCTCGTATTCAATGGTTG
* * * *
37424038 AATTGAGTCGCTTGTGTTTCCGATGGTAAAATTAAGTAGTAAGGGTTTCGTTTAACGAAAGGCTG
66 AATCGAGTCGCTTGTGTTCCCGATGGTAAAATTAAGTAGTAAGGGTTTCGTTTAACAAAAGGCTA
*
37424103 ATTTCAAAGAAAGATAGGATTAACAAAGAAAACGTATTTTTAAAGTTCAACCCTGGGAGTGATAA
131 ATTTCAAAGAAAGATAGGAATAACAAAGAAAACGTATTTTTAAAGTTCAACCCTGGGAGTGATAA
37424168 A
196 A
* * * *
37424169 CAATAGTACTTACTTCATTTTAACTAGCTCTGATACCAAATGATGCGATCTCGTATTCGATGGTT
1 CAAT-GTACTTACTTAATTCTAAATAGCTCTGATACCAAATGATGCGATCTCGTATTCAATGGTT
*
37424234 GGATCGAGTCGCTTGTGTTCCCGATGGTAAAATTAAGTAGTAAGGGTTTCGTTTAACAAAAGGCT
65 GAATCGAGTCGCTTGTGTTCCCGATGGTAAAATTAAGTAGTAAGGGTTTCGTTTAACAAAAGGCT
*
37424299 AATTTCAGAGAAAGATAGGAATAACAAAGAAAACGTA
130 AATTTCAAAGAAAGATAGGAATAACAAAGAAAACGTA
37424336 AAGTTGATAA
Statistics
Matches: 155, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
196 4 0.03
197 151 0.97
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (196 bp):
CAATGTACTTACTTAATTCTAAATAGCTCTGATACCAAATGATGCGATCTCGTATTCAATGGTTG
AATCGAGTCGCTTGTGTTCCCGATGGTAAAATTAAGTAGTAAGGGTTTCGTTTAACAAAAGGCTA
ATTTCAAAGAAAGATAGGAATAACAAAGAAAACGTATTTTTAAAGTTCAACCCTGGGAGTGATAA
A
Found at i:37426487 original size:51 final size:52
Alignment explanation
Indices: 37426406--37426505 Score: 166
Period size: 51 Copynumber: 1.9 Consensus size: 52
37426396 GCTTTGATTC
*
37426406 ATGTTTATTAAGTGTGTCCTAATTCAGACAGCATCAATGCATGT-TTAATTT
1 ATGTTTATTAAGTGTGTCCTAATTCAGACAGCATCAAAGCATGTGTTAATTT
* *
37426457 ATGTTTATTAAGTGTGTCTTAATTCGGACAGCATCAAAGCATGTGTTAA
1 ATGTTTATTAAGTGTGTCCTAATTCAGACAGCATCAAAGCATGTGTTAA
37426506 GTCATATTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 41 0.91
52 4 0.09
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (52 bp):
ATGTTTATTAAGTGTGTCCTAATTCAGACAGCATCAAAGCATGTGTTAATTT
Found at i:37430940 original size:26 final size:26
Alignment explanation
Indices: 37430911--37430965 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
37430901 TATGACTTGA
37430911 ATGAATACATGAATTTGGTTTGATGG
1 ATGAATACATGAATTTGGTTTGATGG
37430937 ATGAATACATGAATTTGGTTTGATGG
1 ATGAATACATGAATTTGGTTTGATGG
37430963 ATG
1 ATG
37430966 GAGCTTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (26 bp):
ATGAATACATGAATTTGGTTTGATGG
Found at i:37431282 original size:39 final size:37
Alignment explanation
Indices: 37431232--37431358 Score: 137
Period size: 39 Copynumber: 3.3 Consensus size: 37
37431222 CGGAATTTAA
* * * * *
37431232 ACATACTTAAAACATGTATCAAAGATGTCCTAAACTATG
1 ACATAATTAAAACAT-TATTAATGATGTTC-AAATTATG
* *
37431271 ACATAATTAAAACCCTTATTAATGTTGTTCAAATTATG
1 ACATAATTAAAA-CATTATTAATGATGTTCAAATTATG
*
37431309 ACATAATTAAAAACACATATTAATGATGTTCAAATTATG
1 ACATAATT-AAAACA-TTATTAATGATGTTCAAATTATG
37431348 ACATAATTAAA
1 ACATAATTAAA
37431359 GACTCAGACT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
38 19 0.25
39 54 0.72
40 2 0.03
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.33
Consensus pattern (37 bp):
ACATAATTAAAACATTATTAATGATGTTCAAATTATG
Found at i:37431314 original size:38 final size:38
Alignment explanation
Indices: 37431267--37431358 Score: 148
Period size: 39 Copynumber: 2.4 Consensus size: 38
37431257 TGTCCTAAAC
* * *
37431267 TATGACATAATTAAAACCCTTATTAATGTTGTTCAAAT
1 TATGACATAATTAAAACACATATTAATGATGTTCAAAT
37431305 TATGACATAATTAAAAACACATATTAATGATGTTCAAAT
1 TATGACATAATT-AAAACACATATTAATGATGTTCAAAT
37431344 TATGACATAATTAAA
1 TATGACATAATTAAA
37431359 GACTCAGACT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
38 15 0.30
39 35 0.70
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.36
Consensus pattern (38 bp):
TATGACATAATTAAAACACATATTAATGATGTTCAAAT
Found at i:37434235 original size:14 final size:13
Alignment explanation
Indices: 37434216--37434249 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
37434206 TGCTGATTTC
37434216 TTTTTTTCACAAAT
1 TTTTTTTCAC-AAT
37434230 TTTTTTTCACAAT
1 TTTTTTTCACAAT
37434243 TTTTTTT
1 TTTTTTT
37434250 AGATTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTTTCACAAT
Found at i:37444808 original size:13 final size:13
Alignment explanation
Indices: 37444790--37444814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37444780 TAATGGTATA
37444790 TTGAATCCATGAC
1 TTGAATCCATGAC
37444803 TTGAATCCATGA
1 TTGAATCCATGA
37444815 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:37446299 original size:47 final size:47
Alignment explanation
Indices: 37446246--37446587 Score: 495
Period size: 47 Copynumber: 7.2 Consensus size: 47
37446236 AATTCTAAAT
37446246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37446293 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
37446342 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
37446389 TGCGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
37446438 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
37446485 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
37446532 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
37446579 TGTGATAAG
1 TGTGATAAG
37446588 TCCCGAAGGG
Statistics
Matches: 265, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
47 177 0.67
49 88 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:37446410 original size:96 final size:96
Alignment explanation
Indices: 37446246--37446587 Score: 517
Period size: 96 Copynumber: 3.6 Consensus size: 96
37446236 AATTCTAAAT
* *
37446246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
37446311 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * *
37446342 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGCGATAAGGCCTAATAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
37446407 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
37446438 TGTGATAAGGCTTAATGGCCAATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
37446503 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * * * * * **
37446532 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
37446588 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
94 52 0.23
96 175 0.77
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:37446490 original size:143 final size:143
Alignment explanation
Indices: 37446249--37446587 Score: 506
Period size: 143 Copynumber: 2.4 Consensus size: 143
37446239 TCTAAATTGT
37446249 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
* *
37446313 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
66 AATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
37446378 AAGTGTATATGTGC
130 AAGTGTATATATGC
* *
37446392 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGC
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGC
*
37446457 CAATGTGATGAATGTGAAAGTG-TATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
65 CAATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGA
*
37446521 AAGTGTATATATGT
130 AAGTGTATATATGC
* * * * * *
37446535 GACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-ATGTGATAAG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAG
37446588 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 123 0.69
145 45 0.25
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCC
AATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGC
Found at i:37446761 original size:37 final size:37
Alignment explanation
Indices: 37446705--37446783 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37446695 TCGAGCTCTA
* * *
37446705 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37446742 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37446779 AAGAC
1 AAGAC
37446784 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37448901 original size:119 final size:120
Alignment explanation
Indices: 37448717--37448934 Score: 291
Period size: 119 Copynumber: 1.8 Consensus size: 120
37448707 GCTCCTCGTT
**
37448717 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37448782 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
* * **
37448837 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
37448899 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
37448935 GCCCGGACAT
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.04
119 58 0.68
120 24 0.28
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
Found at i:37448941 original size:40 final size:40
Alignment explanation
Indices: 37448717--37448941 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
37448707 GCTCCTCGTT
* *
37448717 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37448757 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
37448797 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37448837 CAAATGCCTTCGGG-CTTAGCCCAGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37448876 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37448917 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37448942 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 118 0.72
41 12 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37456784 original size:39 final size:40
Alignment explanation
Indices: 37456627--37456798 Score: 276
Period size: 40 Copynumber: 4.3 Consensus size: 40
37456617 GCTCCTCGTT
* *
37456627 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
37456667 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37456707 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37456747 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37456786 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37456799 ATCTTAGTCC
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 35 0.28
40 89 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37456811 original size:79 final size:80
Alignment explanation
Indices: 37456627--37456838 Score: 279
Period size: 80 Copynumber: 2.7 Consensus size: 80
37456617 GCTCCTCGTT
*
37456627 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
37456691 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* *
37456707 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
37456771 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * *
37456786 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGG
37456839 AANNNNNNNN
Statistics
Matches: 118, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 3 0.03
79 56 0.47
80 57 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:37468566 original size:118 final size:119
Alignment explanation
Indices: 37468383--37468604 Score: 299
Period size: 118 Copynumber: 1.9 Consensus size: 119
37468373 GCTCCTCGTT
*
37468383 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37468448 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
* * **
37468502 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
37468564 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
37468605 GACATCATTC
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 64 0.71
119 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
Found at i:37468606 original size:40 final size:40
Alignment explanation
Indices: 37468383--37468606 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
37468373 GCTCCTCGTT
* *
37468383 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37468423 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37468463 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37468502 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37468541 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37468582 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37468607 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 9 0.05
39 54 0.33
40 89 0.54
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37476472 original size:119 final size:120
Alignment explanation
Indices: 37476288--37476512 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
37476278 GCTCCTCGTT
*
37476288 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
37476353 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
37476408 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
37476470 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
37476513 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37476512 original size:40 final size:40
Alignment explanation
Indices: 37476288--37476512 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
37476278 GCTCCTCGTT
* *
37476288 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37476328 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37476368 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
37476408 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
37476447 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37476488 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37476513 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37486407 original size:14 final size:15
Alignment explanation
Indices: 37486388--37486417 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
37486378 TGGTGGCTGG
37486388 TTCGGTTC-ACTAGA
1 TTCGGTTCAACTAGA
37486402 TTCGGTTCAACTAGA
1 TTCGGTTCAACTAGA
37486417 T
1 T
37486418 CCTTTTTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (15 bp):
TTCGGTTCAACTAGA
Found at i:37496603 original size:62 final size:62
Alignment explanation
Indices: 37496479--37496603 Score: 135
Period size: 62 Copynumber: 2.0 Consensus size: 62
37496469 GTTTCTAGGT
* * * * * * ** *
37496479 CGTGTAACTCACTGTTTGTGGTTTCAGACCACACGGTCAAGGACACGGGTATGTGTCTAGGC
1 CGTGTAACTAACTATTTGTGGTATAAAACCACACGGTCAAGGACACGAGTATGTACCCAGGC
* *
37496541 CGTGTAACTAACTATTTGTGGTATAAAACCACAC-GTCCAGGTACACGAGTGTGTACCCAGGC
1 CGTGTAACTAACTATTTGTGGTATAAAACCACACGGTCAAGG-ACACGAGTATGTACCCAGGC
37496603 C
1 C
37496604 ATGTGAGTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
61 6 0.12
62 45 0.88
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (62 bp):
CGTGTAACTAACTATTTGTGGTATAAAACCACACGGTCAAGGACACGAGTATGTACCCAGGC
Found at i:37502530 original size:27 final size:27
Alignment explanation
Indices: 37502511--37502610 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
37502501 ATATATTAAG
*
37502511 TCCGCACACTCAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAATCAA
37502538 -CTCGCACACTTAGTGCTATATAATCAA
1 TC-CGCACACTTAGTGCTATATAATCAA
* * *
37502565 ACTCGCACACTTAGTGCTATACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA--TCAA
*
37502595 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
37502611 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 24 0.37
28 22 0.34
29 14 0.22
30 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TCCGCACACTTAGTGCTATATAATCAA
Found at i:37502576 original size:28 final size:28
Alignment explanation
Indices: 37502513--37502610 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
37502503 ATATTAAGTC
*
37502513 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37502540 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
37502568 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37502597 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37502611 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 22 0.34
28 24 0.37
29 19 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37503082 original size:14 final size:14
Alignment explanation
Indices: 37503063--37503090 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37503053 TGGGCATACT
37503063 TATGTATATATATA
1 TATGTATATATATA
37503077 TATGTATATATATA
1 TATGTATATATATA
37503091 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:37506382 original size:32 final size:31
Alignment explanation
Indices: 37506336--37506412 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 31
37506326 TTTGAAGTGT
* ** * *
37506336 CTTTGGTGCGAACACTTGGATTTGGACTGTC
1 CTTTGGTGTGAACACCAGGAATTGGACGGTC
37506367 CTTTGGGTGTGAACACCAGGAATTGGACGGTC
1 CTTT-GGTGTGAACACCAGGAATTGGACGGTC
*
37506399 CATTGGTGTGAACA
1 CTTTGGTGTGAACA
37506413 AAAGTAGCTG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (31 bp):
CTTTGGTGTGAACACCAGGAATTGGACGGTC
Found at i:37510403 original size:32 final size:32
Alignment explanation
Indices: 37510367--37510446 Score: 144
Period size: 32 Copynumber: 2.5 Consensus size: 32
37510357 TTCACTTCCT
*
37510367 AGTGTTCACACCCAAAGGACCGTCTAAGTCCA
1 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
37510399 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
1 AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
37510431 AGTGTTCACA-CCAAAG
1 AGTGTTCACACCCAAAG
37510447 ACTCTTCAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 6 0.13
32 41 0.87
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (32 bp):
AGTGTTCACACCCAAAGGACCGTCCAAGTCCA
Found at i:37522551 original size:63 final size:59
Alignment explanation
Indices: 37522467--37522608 Score: 151
Period size: 63 Copynumber: 2.3 Consensus size: 59
37522457 AATCTAACTT
* * * * *
37522467 AGACAAGTATTAATGTGGTACA-AACTAAGACACCATTAATAGACTTAGAACAACTAAACAATC
1 AGACATGTAATAATGTTGTACACAA-TAAGACACAATTAAAAGACTT--AACAA--AAACAATC
* * * *
37522530 AGACATGTAATAATGTTGTACACAATAGGACACAATTAAAAGACTTAACTAAAATATTC
1 AGACATGTAATAATGTTGTACACAATAAGACACAATTAAAAGACTTAACAAAAACAATC
37522589 AGACATGTAATAATGTTGTA
1 AGACATGTAATAATGTTGTA
37522609 TGAAATCAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
59 26 0.38
61 4 0.06
63 37 0.54
64 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.26
Consensus pattern (59 bp):
AGACATGTAATAATGTTGTACACAATAAGACACAATTAAAAGACTTAACAAAAACAATC
Found at i:37529828 original size:40 final size:40
Alignment explanation
Indices: 37529735--37529959 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
37529725 GCTCCTCGTT
* * * *
37529735 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
37529775 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
37529814 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37529854 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
37529894 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
37529935 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37529960 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
39 39 0.25
40 105 0.66
41 15 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37529968 original size:41 final size:41
Alignment explanation
Indices: 37529891--37529968 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37529881 TTTGTATCTC
* * *
37529891 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37529932 GCACAAA-GCCTTCAGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37529969 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37532931 original size:38 final size:39
Alignment explanation
Indices: 37532802--37532945 Score: 134
Period size: 39 Copynumber: 3.7 Consensus size: 39
37532792 TAAAGACATG
* * *
37532802 TATTAAAGATG-TCTAAACTAGGACATATTTAAAACAT--A
1 TATTAAAGATGTTC-AAATTATGACATAATTAAAA-ATCCA
* * * *
37532840 TATTTAAGATGTCCTAAACTATGACATAATTAAAAATCCT
1 TATTAAAGATGTTC-AAATTATGACATAATTAAAAATCCA
* *
37532880 TATTAAAGATGTTCAGATTATGACATAATTAAAACT-CA
1 TATTAAAGATGTTCAAATTATGACATAATTAAAAATCCA
* *
37532918 TATTAATGATGTTCAAATTATGATATAA
1 TATTAAAGATGTTCAAATTATGACATAA
37532946 GTACAGACTT
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
38 38 0.43
39 39 0.44
40 12 0.13
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (39 bp):
TATTAAAGATGTTCAAATTATGACATAATTAAAAATCCA
Found at i:37536925 original size:9 final size:9
Alignment explanation
Indices: 37536907--37536935 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
37536897 ATAATATATA
37536907 TTTT-TTAT
1 TTTTCTTAT
37536915 TTTTCTTAT
1 TTTTCTTAT
37536924 TTTTCTTAT
1 TTTTCTTAT
37536933 TTT
1 TTT
37536936 CACTTTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTCTTAT
Found at i:37540493 original size:39 final size:40
Alignment explanation
Indices: 37540422--37540604 Score: 198
Period size: 39 Copynumber: 4.7 Consensus size: 40
37540412 GCTACTCGTT
*
37540422 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
37540462 CAATTGCCTT-GGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37540501 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
37540540 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
37540581 CAAA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37540605 CATCATTCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.02
39 79 0.66
40 31 0.26
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37548485 original size:79 final size:82
Alignment explanation
Indices: 37548374--37548558 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37548364 GCTACTCGTT
* * *
37548374 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37548437 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37548454 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37548517 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37548534 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37548559 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37548558 original size:40 final size:40
Alignment explanation
Indices: 37548355--37548558 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37548345 CGGAATTTAA
** *
37548355 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37548395 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37548435 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37548474 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37548514 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37548554 CCGGA
1 CCGGA
37548559 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37567900 original size:40 final size:40
Alignment explanation
Indices: 37567863--37567995 Score: 187
Period size: 40 Copynumber: 3.3 Consensus size: 40
37567853 GCTACTCGTT
*
37567863 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
37567903 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
37567943 CAAATGCCTTCGGGACTTAACCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
37567983 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37567996 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
40 83 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37567975 original size:80 final size:81
Alignment explanation
Indices: 37567863--37568046 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 81
37567853 GCTACTCGTT
* * ** *
37567863 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
37567927 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
37567943 CAAATGCCTTCGGGACTTAACCCAGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCC-GAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37568007 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
*
37568024 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCG
37568047 GACATCATTC
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
79 4 0.05
80 74 0.84
81 10 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:37570603 original size:22 final size:23
Alignment explanation
Indices: 37570576--37570619 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
37570566 TAGGCCTTTC
37570576 TTATTCACAT-CTTAAATAAAGT
1 TTATTCACATGCTTAAATAAAGT
* *
37570598 TTATTCGCATGTTTAAATAAAG
1 TTATTCACATGCTTAAATAAAG
37570620 AACTTGTCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (23 bp):
TTATTCACATGCTTAAATAAAGT
Found at i:37582951 original size:38 final size:38
Alignment explanation
Indices: 37582883--37582986 Score: 115
Period size: 38 Copynumber: 2.7 Consensus size: 38
37582873 TTGAGTAAAA
37582883 AAATTTGGTATTC-TGTTAAATATTTT-GTTATACATTAG
1 AAATTTGGTA-TCAT-TTAAATATTTTGGTTATACATTAG
* * **
37582921 AGATTTGGTATCATTTACATATTTTGGTTATTTATTAG
1 AAATTTGGTATCATTTAAATATTTTGGTTATACATTAG
*
37582959 AAATTTTGGTATCA-TTAGATATTTTGGT
1 AAA-TTTGGTATCATTTAAATATTTTGGT
37582987 ATTTGGTATT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
37 12 0.21
38 35 0.61
39 10 0.18
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.51
Consensus pattern (38 bp):
AAATTTGGTATCATTTAAATATTTTGGTTATACATTAG
Found at i:37582977 original size:18 final size:18
Alignment explanation
Indices: 37582902--37582988 Score: 86
Period size: 18 Copynumber: 4.7 Consensus size: 18
37582892 ATTCTGTTAA
*
37582902 ATATTTTGTTATACATTAG
1 ATATTTTGGTAT-CATTAG
* *
37582921 AGA-TTTGGTATCATTTAC
1 ATATTTTGGTATCA-TTAG
*
37582939 ATATTTTGGTTATTTATTAG
1 ATATTTTGG-TA-TCATTAG
*
37582959 AAATTTTGGTATCATTAG
1 ATATTTTGGTATCATTAG
37582977 ATATTTTGGTAT
1 ATATTTTGGTAT
37582989 TTGGTATTTG
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
17 2 0.04
18 29 0.53
19 9 0.16
20 13 0.24
21 2 0.04
ACGTcount: A:0.29, C:0.05, G:0.15, T:0.52
Consensus pattern (18 bp):
ATATTTTGGTATCATTAG
Found at i:37585889 original size:25 final size:24
Alignment explanation
Indices: 37585860--37585918 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
37585850 TCAATTAGAA
*
37585860 TAAAATATTAATAATTCAAT-AAAT
1 TAAAAT-TTAATAATTAAATAAAAT
*
37585884 TGAAAATTAAATAATTAAATAAAAT
1 T-AAAATTTAATAATTAAATAAAAT
37585909 TAAAATTTAA
1 TAAAATTTAA
37585919 GAGGAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 20 0.67
25 10 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
TAAAATTTAATAATTAAATAAAAT
Found at i:37593922 original size:27 final size:27
Alignment explanation
Indices: 37593884--37593940 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
37593874 AAGTATGTTA
*
37593884 TAATTTGGACAGCATCAATGCAGGTTT
1 TAATTCGGACAGCATCAATGCAGGTTT
*
37593911 TAATTCGGACAGCATCAATGCATGTTT
1 TAATTCGGACAGCATCAATGCAGGTTT
37593938 TAA
1 TAA
37593941 GTCAGACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (27 bp):
TAATTCGGACAGCATCAATGCAGGTTT
Found at i:37596750 original size:20 final size:20
Alignment explanation
Indices: 37596727--37596920 Score: 117
Period size: 20 Copynumber: 9.7 Consensus size: 20
37596717 GTAAATTATA
* *
37596727 CCCTGTTTGTACTTCGGTAC
1 CCCTGATTGCACTTCGGTAC
* * *
37596747 CCCTAATTACACTTAC-GTGC
1 CCCTGATTGCACTT-CGGTAC
* **
37596767 CCCT-ATTTGTACTTCGCAAC
1 CCCTGA-TTGCACTTCGGTAC
* *
37596787 CCCTGATTACACTTAC-GTGC
1 CCCTGATTGCACTT-CGGTAC
* *
37596807 CCCTGTTTGTACTTCGGTAC
1 CCCTGATTGCACTTCGGTAC
* *
37596827 CCCTGATTACACTTAC-GTGC
1 CCCTGATTGCACTT-CGGTAC
* *
37596847 CCCTGTTTGTACTTCGGTAC
1 CCCTGATTGCACTTCGGTAC
** *
37596867 CCCTGATTGCACTTAAGTGC
1 CCCTGATTGCACTTCGGTAC
* * *
37596887 CCTTGCTTGTACTTCGGTAC
1 CCCTGATTGCACTTCGGTAC
*
37596907 GCCTGATTGCACTT
1 CCCTGATTGCACTT
37596921 GCGTGCCCCT
Statistics
Matches: 124, Mismatches: 42, Indels: 16
0.68 0.23 0.09
Matches are distributed among these distances:
19 4 0.03
20 116 0.94
21 4 0.03
ACGTcount: A:0.16, C:0.32, G:0.17, T:0.35
Consensus pattern (20 bp):
CCCTGATTGCACTTCGGTAC
Found at i:37596945 original size:40 final size:40
Alignment explanation
Indices: 37596727--37596934 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
37596717 GTAAATTATA
*
37596727 CCCTGTTTGTACTTCGGTACCCCTAATTACACTTACGTGC
1 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
* **
37596767 CCCTATTTGTACTTCGCAACCCCTGATTACACTTACGTGC
1 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
37596807 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
1 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
* *
37596847 CCCTGTTTGTACTTCGGTACCCCTGATTGCACTTAAGTGC
1 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
* * * * *
37596887 CCTTGCTTGTACTTCGGTACGCCTGATTGCACTTGCGTGC
1 CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
37596927 CCCTGTTT
1 CCCTGTTT
37596935 AAATTTCGGT
Statistics
Matches: 152, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 152 1.00
ACGTcount: A:0.15, C:0.32, G:0.18, T:0.35
Consensus pattern (40 bp):
CCCTGTTTGTACTTCGGTACCCCTGATTACACTTACGTGC
Found at i:37602089 original size:127 final size:127
Alignment explanation
Indices: 37601863--37602112 Score: 439
Period size: 127 Copynumber: 2.0 Consensus size: 127
37601853 CACTTGAAAA
* *
37601863 AAACATAGAAAAATTAGCTAAGTTAAAATTGAACAGAAAAAATTTAACCAAAATGCAAAATTAAA
1 AAACATAGAAAAATTAGCTAAGTTAAAATTGAACAGAAAAAATTTAAACAAAATGAAAAATTAAA
37601928 AAATTCACAAATAATGACTTTTAAAACTGTCCCCGACAACGGCGCCAAAAACTTGGAACAAC
66 AAATTCACAAATAATGACTTTTAAAACTGTCCCCGACAACGGCGCCAAAAACTTGGAACAAC
* *
37601990 AAACATTGAAAAATTAGCTAAGTTAAAATTGAACAGAAAAAATTTAAACAAAATGAAAAATTAAC
1 AAACATAGAAAAATTAGCTAAGTTAAAATTGAACAGAAAAAATTTAAACAAAATGAAAAATTAAA
*
37602055 AAATTCACAAATAGTGACTTTTAAAA-TAGTCCCCGACAACGGCGCCAAAAACTTGGAA
66 AAATTCACAAATAATGACTTTTAAAACT-GTCCCCGACAACGGCGCCAAAAACTTGGAA
37602113 TGACAGAAGT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
126 1 0.01
127 116 0.99
ACGTcount: A:0.51, C:0.16, G:0.12, T:0.21
Consensus pattern (127 bp):
AAACATAGAAAAATTAGCTAAGTTAAAATTGAACAGAAAAAATTTAAACAAAATGAAAAATTAAA
AAATTCACAAATAATGACTTTTAAAACTGTCCCCGACAACGGCGCCAAAAACTTGGAACAAC
Found at i:37604598 original size:23 final size:22
Alignment explanation
Indices: 37604555--37604598 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
37604545 TTCTAAGTCG
37604555 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
37604578 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
37604599 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:37604807 original size:51 final size:50
Alignment explanation
Indices: 37604745--37604927 Score: 242
Period size: 51 Copynumber: 3.6 Consensus size: 50
37604735 TCAGTTCACA
*
37604745 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCTGGTACACG
* * * * * * *
37604796 TAGTAGTCTGCACATAGTACTACACATGTGATCGAAACTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATCTGGTACACG
* *
37604847 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCTGGTACACG
37604897 TAGTAGCCTGCACATAGTACTACACATGTGA
1 TAGTAGCCTGCACATAGTACTACACATGTGA
37604928 TCATGACTTT
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 2 0.02
50 39 0.35
51 69 0.62
52 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCTGGTACACG
Found at i:37604921 original size:101 final size:101
Alignment explanation
Indices: 37604743--37604929 Score: 313
Period size: 101 Copynumber: 1.8 Consensus size: 101
37604733 GTTCAGTTCA
* *
37604743 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCTGATACACGTAGTAGTCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TACCATCTGATACACGTAGTAGCCTGCA
37604808 CATAGTACTACACATGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACATGTGATCGAAACTATCCGGTACG
* *
37604845 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCTGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCA-TCTGATACACGTAGTAGCCTGCA
37604909 CATAGTACTACACATGTGATC
65 CATAGTACTACACATGTGATC
37604930 ATGACTTTCA
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
100 4 0.05
101 42 0.52
102 34 0.43
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATACCATCTGATACACGTAGTAGCCTGCAC
ATAGTACTACACATGTGATCGAAACTATCCGGTACG
Found at i:37613010 original size:11 final size:11
Alignment explanation
Indices: 37612994--37613018 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37612984 ATTAACCTTT
37612994 AAAATTCATTA
1 AAAATTCATTA
37613005 AAAATTCATTA
1 AAAATTCATTA
37613016 AAA
1 AAA
37613019 CCTATCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAAATTCATTA
Found at i:37615306 original size:41 final size:43
Alignment explanation
Indices: 37615255--37615367 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
37615245 AACCGTTACT
* * * * *
37615255 CGGTGAAATCAGCACCTAGCAACCACCTT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACATAGCAACCACCTTCACAATCAAG-GAAA
37615297 CGG-GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGAAA
1 CGGTGGAATCAGCACATAGCAACCACC-TTCACAATCAAGGAAA
* *
37615339 CGGTGGAATCAGCACTTAGCAACTACCTT
1 CGGTGGAATCAGCACATAGCAACCACCTT
37615368 TAGAATAAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
40 2 0.03
41 20 0.34
42 13 0.22
43 22 0.37
44 2 0.03
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (43 bp):
CGGTGGAATCAGCACATAGCAACCACCTTCACAATCAAGGAAA
Found at i:37615428 original size:41 final size:41
Alignment explanation
Indices: 37615261--37615531 Score: 235
Period size: 41 Copynumber: 6.5 Consensus size: 41
37615251 TACTCGGTGA
* * *
37615261 AATCAGCACCTAGCAACCACCTTAT--ATTCAGTGATACGGGG
1 AATCAGCACTTAGCAACC-CCTTTTCGA-TCAGTGATTCGGGG
* * * **
37615302 AATCAGCACATAGCAACCCCTTTCACAATCAAG-GAAACGGTGG
1 AATCAGCACTTAGCAACCCCTTT-TCGATC-AGTGATTCGG-GG
* * * * * *
37615345 AATCAGCACTTAGCAACTACC-TTTAGAATAAATAATTTGGGG
1 AATCAGCACTTAGCAAC-CCCTTTTCG-ATCAGTGATTCGGGG
37615387 AATCAGCACTTAGCAACCCCTTTTCGATCAGTGATTCGGGG
1 AATCAGCACTTAGCAACCCCTTTTCGATCAGTGATTCGGGG
** * *
37615428 AATTTGCACTTAGCAACCCCTTTTTGATAAGTGATTCGGGG
1 AATCAGCACTTAGCAACCCCTTTTCGATCAGTGATTCGGGG
** * *
37615469 AATTTGCAATTAGCAACCCCTTTTTGATCAGTGATTCGGGG
1 AATCAGCACTTAGCAACCCCTTTTCGATCAGTGATTCGGGG
**
37615510 AATTTGCACTTAGCAACCCCTT
1 AATCAGCACTTAGCAACCCCTT
37615532 ACATTCAATG
Statistics
Matches: 193, Mismatches: 28, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
40 4 0.02
41 127 0.66
42 32 0.17
43 28 0.15
44 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
AATCAGCACTTAGCAACCCCTTTTCGATCAGTGATTCGGGG
Found at i:37618731 original size:20 final size:19
Alignment explanation
Indices: 37618692--37618732 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
37618682 CACTATACCC
* *
37618692 TTTTTTTACTAGACTCTTT
1 TTTTTTTACTAGAATATTT
37618711 TTTTCTTTACTAGAATATTT
1 TTTT-TTTACTAGAATATTT
37618731 TT
1 TT
37618733 CCCGCAGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.20, C:0.12, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTTTTACTAGAATATTT
Found at i:37622717 original size:2 final size:2
Alignment explanation
Indices: 37622710--37622736 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
37622700 CAACACTGGA
37622710 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
37622737 AGTTGCTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37636513 original size:10 final size:10
Alignment explanation
Indices: 37636498--37636525 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
37636488 ATGCCAAAAG
37636498 AAGAACAACA
1 AAGAACAACA
37636508 AAGAACAACA
1 AAGAACAACA
37636518 AAGAACAA
1 AAGAACAA
37636526 TAGAAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.18, G:0.11, T:0.00
Consensus pattern (10 bp):
AAGAACAACA
Found at i:37639978 original size:13 final size:13
Alignment explanation
Indices: 37639960--37639988 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
37639950 TGTCAACTTA
37639960 GAATACTAATTAT
1 GAATACTAATTAT
37639973 GAATACTAATTAT
1 GAATACTAATTAT
37639986 GAA
1 GAA
37639989 CTTCATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.34
Consensus pattern (13 bp):
GAATACTAATTAT
Found at i:37642682 original size:27 final size:27
Alignment explanation
Indices: 37642620--37642704 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 27
37642610 TTTAATAATT
**
37642620 TTTTAATTTTTAAAT-ATTTTTA-AAA
1 TTTTAATTTTTTTATGATTTTTATAAA
*
37642645 CTCTTTTATTTTTTTATGATTTTTATAAA
1 -T-TTTAATTTTTTTATGATTTTTATAAA
* *
37642674 TTTTAATTTTTTTA-GAATTATTATAAT
1 TTTTAATTTTTTTATG-ATTTTTATAAA
37642701 TTTT
1 TTTT
37642705 TACCATTTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
26 2 0.04
27 36 0.73
28 8 0.16
29 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTTAATTTTTTTATGATTTTTATAAA
Found at i:37642759 original size:34 final size:36
Alignment explanation
Indices: 37642691--37642761 Score: 101
Period size: 35 Copynumber: 2.0 Consensus size: 36
37642681 TTTTTTAGAA
* *
37642691 TTATTATAATTTTTTACCATTTTTAATATTTAATGTT
1 TTATTAT-ATTTTTTACCATTTATAATATATAATGTT
37642728 TTATTAT-TTTTTTACCATTTAT-ATATATAATGTT
1 TTATTATATTTTTTACCATTTATAATATATAATGTT
37642762 CTGAACCACA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
34 11 0.34
35 14 0.44
37 7 0.22
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (36 bp):
TTATTATATTTTTTACCATTTATAATATATAATGTT
Found at i:37644485 original size:21 final size:22
Alignment explanation
Indices: 37644461--37644511 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
37644451 TGAACAGTTA
37644461 ATAGAAATGCA-A-ACAACTGCT
1 ATAGAAAT-CATATACAACTGCT
*
37644482 ATAGAAATCATATAGAACTGCT
1 ATAGAAATCATATACAACTGCT
*
37644504 ATGGAAAT
1 ATAGAAAT
37644512 AAGTGATCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 2 0.08
21 9 0.35
22 15 0.58
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.24
Consensus pattern (22 bp):
ATAGAAATCATATACAACTGCT
Found at i:37646731 original size:22 final size:23
Alignment explanation
Indices: 37646693--37646749 Score: 55
Period size: 23 Copynumber: 2.5 Consensus size: 23
37646683 GGTTTGATAG
*
37646693 GCTAAA-TAGAAGAGATTTTATACA
1 GCTAAATTAG-AG-GATTATATACA
* *
37646717 -CTAATTTAGAGGATTATGTACA
1 GCTAAATTAGAGGATTATATACA
37646739 GCTAAATTAGA
1 GCTAAATTAGA
37646750 ATTCTTTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
22 9 0.33
23 15 0.56
24 3 0.11
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.32
Consensus pattern (23 bp):
GCTAAATTAGAGGATTATATACA
Found at i:37648902 original size:2 final size:2
Alignment explanation
Indices: 37648897--37648921 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37648887 ATATATATAC
37648897 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
37648922 TGGGTAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Done.