Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 133 of 213
Found at i:39042718 original size:61 final size:62
Alignment explanation
Indices: 39042629--39043019 Score: 318
Period size: 61 Copynumber: 6.4 Consensus size: 62
39042619 CCTTTATCAT
* * ** *
39042629 CAAATCAA-TTCAACAATATATATTCATATACGAATCAGA-TTCGGCAATGTATAATCATATA
1 CAAATCAATTTCAGCAATGTATAACCATATACAAATCA-ATTTCGGCAATGTATAATCATATA
* * ** * *
39042690 CAAATCAATTT-GGCAATGGATAACCATATATGAATCAAGTTCGGGAATGTATAATCATATA
1 CAAATCAATTTCAGCAATGTATAACCATATACAAATCAATTTCGGCAATGTATAATCATATA
* * * ** * *
39042751 CAAATTAA-TTCAGCAACT-TATATCCATATACAATTCAATTTCAACAATTTATAACCATATA
1 CAAATCAATTTCAGCAA-TGTATAACCATATACAAATCAATTTCGGCAATGTATAATCATATA
* * * **
39042812 CAAATTAATTTCAGCAAAGTATAATCATATACAAATCAA-TTCGGCAACT-TATCTTCATATA
1 CAAATCAATTTCAGCAATGTATAACCATATACAAATCAATTTCGGCAA-TGTATAATCATATA
* * *
39042873 CAAATCAATTTC-GACAATGTATAACCATATACAAATAAATTTCAGCAATGTATAATTATATA
1 CAAATCAATTTCAG-CAATGTATAACCATATACAAATCAATTTCGGCAATGTATAATCATATA
* *** * * ** *
39042935 CGAATCAA-TTC-GACAACT-TATCTTCATAAATAAATCAATTTCGATAATGTATAACCATATA
1 CAAATCAATTTCAG-CAA-TGTATAACCATATACAAATCAATTTCGGCAATGTATAATCATATA
* *
39042996 CAAATAAATTTCAACAATGTATAA
1 CAAATCAATTTCAGCAATGTATAA
39043020 AACAATCAAA
Statistics
Matches: 261, Mismatches: 55, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
60 4 0.02
61 195 0.75
62 62 0.24
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.32
Consensus pattern (62 bp):
CAAATCAATTTCAGCAATGTATAACCATATACAAATCAATTTCGGCAATGTATAATCATATA
Found at i:39042834 original size:92 final size:91
Alignment explanation
Indices: 39042629--39043019 Score: 446
Period size: 92 Copynumber: 4.3 Consensus size: 91
39042619 CCTTTATCAT
* * * * * **
39042629 CAAATCAA-TTCAACAATATATATTCATATACGAATCAGATTCGGCAA-TGTATAATCATATACA
1 CAAATAAATTTCAGCAATGTATAATCATATACAAATCA-ATTC-GCAACT-TATCTTCATATACA
* *
39042692 AATCAATTT-GGCAATGGATAACCATATA
63 AATCAATTTCGACAATGTATAACCATATA
** * * * * * * * *
39042720 TGAATCAAGTTCGGGAATGTATAATCATATACAAATTAATTCAGCAACTTATATCCATATACAAT
1 CAAATAAATTTCAGCAATGTATAATCATATACAAATCAATTC-GCAACTTATCTTCATATACAAA
* *
39042785 TCAATTTCAACAATTTATAACCATATA
65 TCAATTTCGACAATGTATAACCATATA
* *
39042812 CAAATTAATTTCAGCAAAGTATAATCATATACAAATCAATTCGGCAACTTATCTTCATATACAAA
1 CAAATAAATTTCAGCAATGTATAATCATATACAAATCAATTC-GCAACTTATCTTCATATACAAA
39042877 TCAATTTCGACAATGTATAACCATATA
65 TCAATTTCGACAATGTATAACCATATA
* * * *
39042904 CAAATAAATTTCAGCAATGTATAATTATATACGAATCAATTCGACAACTTATCTTCATAAATAAA
1 CAAATAAATTTCAGCAATGTATAATCATATACAAATCAATTCG-CAACTTATCTTCATATACAAA
*
39042969 TCAATTTCGATAATGTATAACCATATA
65 TCAATTTCGACAATGTATAACCATATA
*
39042996 CAAATAAATTTCAACAATGTATAA
1 CAAATAAATTTCAGCAATGTATAA
39043020 AACAATCAAA
Statistics
Matches: 257, Mismatches: 39, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
91 35 0.14
92 222 0.86
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.32
Consensus pattern (91 bp):
CAAATAAATTTCAGCAATGTATAATCATATACAAATCAATTCGCAACTTATCTTCATATACAAAT
CAATTTCGACAATGTATAACCATATA
Found at i:39056529 original size:21 final size:21
Alignment explanation
Indices: 39056505--39056548 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
39056495 GTCGTGTTGA
39056505 TATATAAAATCGGTTCTTTTC
1 TATATAAAATCGGTTCTTTTC
*
39056526 TATATAACATCGGTTCTTTTC
1 TATATAAAATCGGTTCTTTTC
39056547 TA
1 TA
39056549 GTTCATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.09, T:0.48
Consensus pattern (21 bp):
TATATAAAATCGGTTCTTTTC
Found at i:39061443 original size:26 final size:26
Alignment explanation
Indices: 39061410--39061465 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
39061400 TTTTTACATG
*
39061410 ATAA-AATTAGGGTTAAATTTTAGTT
1 ATAATAATTAGGGTTAAATTTCAGTT
39061435 ATAATAATTAGGGTTAAATTTCAGTT
1 ATAATAATTAGGGTTAAATTTCAGTT
39061461 ATAAT
1 ATAAT
39061466 CCCTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 4 0.14
26 25 0.86
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.43
Consensus pattern (26 bp):
ATAATAATTAGGGTTAAATTTCAGTT
Found at i:39074961 original size:18 final size:19
Alignment explanation
Indices: 39074938--39074978 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
39074928 TTTGAGAAAC
* *
39074938 TTTTG-AATTTGTATATGT
1 TTTTGAAATTTATATATAT
39074956 TTTTGAAATTTATATATAT
1 TTTTGAAATTTATATATAT
39074975 TTTT
1 TTTT
39074979 TATTTAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (19 bp):
TTTTGAAATTTATATATAT
Found at i:39077463 original size:6 final size:7
Alignment explanation
Indices: 39077446--39077473 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
39077436 ATTATTTTTA
39077446 AAAAAAT
1 AAAAAAT
39077453 AAAAAAT
1 AAAAAAT
39077460 AAAAAAT
1 AAAAAAT
39077467 AAAAAAT
1 AAAAAAT
39077474 TATATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:39079407 original size:14 final size:14
Alignment explanation
Indices: 39079369--39079410 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
39079359 TTTTGGTATT
*
39079369 TTTTA-TTATTTGT
1 TTTTATTTATTTGG
39079382 TTTTATTTTATTTGG
1 TTTTA-TTTATTTGG
39079397 TTTTATTTATTTGG
1 TTTTATTTATTTGG
39079411 GCTCTACATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 5 0.19
14 9 0.35
15 12 0.46
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (14 bp):
TTTTATTTATTTGG
Found at i:39080528 original size:360 final size:357
Alignment explanation
Indices: 39079865--39080590 Score: 1211
Period size: 360 Copynumber: 2.0 Consensus size: 357
39079855 TTTTTCCACC
* * * *
39079865 AAAAAACCACCATTTCCCTCCACTTTCACCAAATCACCACCACGACATCACCAAAACTTCCCTTT
1 AAAACACCACCATTTCCCGCCACTTTCACCAAATCACCACCACAACATCACCAAAACTTCCCTCT
39079930 CTTCCACACCTCACCATCATCGCACCACCGTCGTGCCGCCATCATAGCACTGCACCACCACCGCC
66 CTTCCACACCTCACCATCATCGCACCACCGTCGTGCCGCCATCATAGCACTGCACCACCACCGCC
* * * *
39079995 GTTAGTTACTATTTTCACCGATTTTCATTTTATTTTCATTTCTTTAGTCATAATTGAATTACTAA
131 GTTAGTCACCATTTTCACCGATTTTCATTTTATCTTCATTTCTTTAGTCATAATTGAACTACTAA
**
39080060 TCCTCCTCTCCTAATTTCATAGATTATTTCTATGTTCTAATATATTATTTTATTTTATTTGGATG
196 TCCTCCTCTCCTAATTTCATAGACCATTTCTATGTTCTAATATATTATTTTATTTTATTTGGATG
*
39080125 ATGAACTTCTCCTTAGATAAATCTCCTCCATCAAACAATTATTCTAGCTAATGCTGATCTCTCCA
261 ATGAACTTCTCCTTAGATAAATCTCCTCAATCAAACAATTATTCTAGCTAATGCTGATCTCTCCA
39080190 ACTTAATATTAGTAACATAAGTATCTATAGGG
326 ACTTAATATTAGTAACATAAGTATCTATAGGG
* *
39080222 AAAACACCACCATTTCCCGCCATTTTTACCAAATCACCACCACAACATCACCAAAACTTCCCTCT
1 AAAACACCACCATTTCCCGCCACTTTCACCAAATCACCACCACAACATCACCAAAACTTCCCTCT
* * *
39080287 CTTCCACACCTCACCATCGTTGCACCACCGTCGTGCCGCCATCGTAGCACTGCACCACCACCACC
66 CTTCCACACCTCACCATCATCGCACCACCGTCGTGCCGCCATCATAGCACTG---CACCACCACC
*
39080352 GCCGTTAGTCACCATTTTCACCGATTTTCATTTTCTCTTCATTTCTTTAGTCATAATTGAACTAC
128 GCCGTTAGTCACCATTTTCACCGATTTTCATTTTATCTTCATTTCTTTAGTCATAATTGAACTAC
* * *
39080417 TAATCCTTCTCTCCTAATTTCATAGACCATTTCTATGTTCTAATCTATTATTTTCTTTTATTTGG
193 TAATCCTCCTCTCCTAATTTCATAGACCATTTCTATGTTCTAATATATTATTTTATTTTATTTGG
* * *
39080482 ATGATGAACTTCTCCTTAGATAAATCTCCTCAATCGAACAATTATTCTAGCTATTGTTGATCTCT
258 ATGATGAACTTCTCCTTAGATAAATCTCCTCAATCAAACAATTATTCTAGCTAATGCTGATCTCT
39080547 CCAACTTAATATTAGTAACATAAGTATCTATAGGG
323 CCAACTTAATATTAGTAACATAAGTATCTATAGGG
39080582 AAAAC-CCAC
1 AAAACACCAC
39080591 ATCAATTTCT
Statistics
Matches: 343, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
357 108 0.31
359 4 0.01
360 231 0.67
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (357 bp):
AAAACACCACCATTTCCCGCCACTTTCACCAAATCACCACCACAACATCACCAAAACTTCCCTCT
CTTCCACACCTCACCATCATCGCACCACCGTCGTGCCGCCATCATAGCACTGCACCACCACCGCC
GTTAGTCACCATTTTCACCGATTTTCATTTTATCTTCATTTCTTTAGTCATAATTGAACTACTAA
TCCTCCTCTCCTAATTTCATAGACCATTTCTATGTTCTAATATATTATTTTATTTTATTTGGATG
ATGAACTTCTCCTTAGATAAATCTCCTCAATCAAACAATTATTCTAGCTAATGCTGATCTCTCCA
ACTTAATATTAGTAACATAAGTATCTATAGGG
Found at i:39081736 original size:13 final size:13
Alignment explanation
Indices: 39081718--39081743 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39081708 CGAAATCTTA
39081718 ATTATAATAATTT
1 ATTATAATAATTT
39081731 ATTATAATAATTT
1 ATTATAATAATTT
39081744 CGATAAACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:39083026 original size:63 final size:63
Alignment explanation
Indices: 39082927--39083079 Score: 189
Period size: 63 Copynumber: 2.4 Consensus size: 63
39082917 AGTTTTACTA
* * * *
39082927 CAATATTGAATGGCTTGGCCACAACATCATTAAGTGGCTTGTCCACAATGTGCAGTTTGTCAG
1 CAATATTGAGTGGCTTGGCCACAACGTCATTAAGTGGCTTGACCACAATGTGCAGCTTGTCAG
* * * * * * * * *
39082990 CGATATTGAGCGGCTTGGGCACAACGTTATTGAGTGGTTTGACCATAATGTGTAGCTTGTCTG
1 CAATATTGAGTGGCTTGGCCACAACGTCATTAAGTGGCTTGACCACAATGTGCAGCTTGTCAG
39083053 CAATATTGAGTGGCTTGGCCACAACGT
1 CAATATTGAGTGGCTTGGCCACAACGT
39083080 GGAGTGTTAT
Statistics
Matches: 74, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 74 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (63 bp):
CAATATTGAGTGGCTTGGCCACAACGTCATTAAGTGGCTTGACCACAATGTGCAGCTTGTCAG
Found at i:39086008 original size:37 final size:37
Alignment explanation
Indices: 39085924--39086009 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
39085914 AGTGATATTC
* * *
39085924 ACTGATTATACTGAATGGGCTCAAATGAGAAATATCT
1 ACTGATTATACTGAACGGGCTCAAAAGAGAAATATAT
* * ** *
39085961 AATGAATATACTGAACGTTCTCAAAAGAGAAATGTAT
1 ACTGATTATACTGAACGGGCTCAAAAGAGAAATATAT
39085998 ACTGATTATACT
1 ACTGATTATACT
39086010 AAAAATTGCT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (37 bp):
ACTGATTATACTGAACGGGCTCAAAAGAGAAATATAT
Found at i:39086083 original size:112 final size:112
Alignment explanation
Indices: 39085842--39086073 Score: 293
Period size: 112 Copynumber: 2.1 Consensus size: 112
39085832 ACAAGCGAGC
* * * * * * * * * * *
39085842 AATATCTATTGAATCTACTAAACGTGCTTAAAATAGCAATGTTTATTGATTATACTGAAAGTTGC
1 AATATCTAATGAATATACTGAACGTTCTCAAAAGAGAAATGTATACTGATTATACTAAAAATTGC
* * * * *
39085907 TCAAACTAGTGATATTCACTGATTATACTGAATGGGCTCAAATGAGA
66 TCAAACAAGCGATATCCACTGATTATACTAAATGGACTCAAATGAGA
39085954 AATATCTAATGAATATACTGAACGTTCTCAAAAGAGAAATGTATACTGATTATACTAAAAATTGC
1 AATATCTAATGAATATACTGAACGTTCTCAAAAGAGAAATGTATACTGATTATACTAAAAATTGC
* *
39086019 TCAAACAAGCGATATCCACTGATTATATTAAATGGACTCAAATGAGT
66 TCAAACAAGCGATATCCACTGATTATACTAAATGGACTCAAATGAGA
*
39086066 GATATCTA
1 AATATCTA
39086074 CTAATTATAC
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
112 101 1.00
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (112 bp):
AATATCTAATGAATATACTGAACGTTCTCAAAAGAGAAATGTATACTGATTATACTAAAAATTGC
TCAAACAAGCGATATCCACTGATTATACTAAATGGACTCAAATGAGA
Found at i:39094675 original size:16 final size:17
Alignment explanation
Indices: 39094638--39094678 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
39094628 TTTTTAATCT
39094638 TTTCTTTCTTTCTTTCAG
1 TTTCTTT-TTTCTTTCAG
39094656 --TCTTTTTT-TTTCAG
1 TTTCTTTTTTCTTTCAG
39094670 TTTCTTTTT
1 TTTCTTTTT
39094679 CAATCTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 6 0.29
15 3 0.14
16 12 0.57
ACGTcount: A:0.05, C:0.17, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTCTTTTTTCTTTCAG
Found at i:39106274 original size:15 final size:16
Alignment explanation
Indices: 39106254--39106294 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
39106244 TTGTAAATCG
39106254 TCTTTTCTTTCC-CTT
1 TCTTTTCTTTCCTCTT
*
39106269 TCTTTTTCTCTCCTCTT
1 TC-TTTTCTTTCCTCTT
39106286 T-TTTTCTTT
1 TCTTTTCTTT
39106295 TTCTTCTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (16 bp):
TCTTTTCTTTCCTCTT
Found at i:39109713 original size:27 final size:27
Alignment explanation
Indices: 39109680--39109886 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
39109670 TAAATTGTGC
*
39109680 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
39109707 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
39109735 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
39109762 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
39109790 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
39109817 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
39109845 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
39109872 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39109887 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:39109744 original size:55 final size:55
Alignment explanation
Indices: 39109680--39109886 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
39109670 TAAATTGTGC
39109680 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
39109735 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
39109790 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
39109845 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
39109887 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:39123318 original size:27 final size:27
Alignment explanation
Indices: 39123285--39123491 Score: 297
Period size: 27 Copynumber: 7.6 Consensus size: 27
39123275 TAAATTGTGC
**
39123285 AGCACTAAGTGTGCGAACTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
39123312 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
39123340 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
39123367 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
39123395 AGCACTAAGTGTGCGAGTTGACAATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
39123422 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
39123450 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
39123477 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39123492 GACTTAATAT
Statistics
Matches: 165, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
27 90 0.55
28 75 0.45
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:39123349 original size:55 final size:55
Alignment explanation
Indices: 39123285--39123491 Score: 342
Period size: 55 Copynumber: 3.8 Consensus size: 55
39123275 TAAATTGTGC
*
39123285 AGCACTAAGTGTGCGAACTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
39123340 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
39123395 AGCACTAAGTGTGCGAGTTGACAATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
39123450 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
39123492 GACTTAATAT
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 144 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:39129022 original size:19 final size:20
Alignment explanation
Indices: 39128985--39129022 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
39128975 CAGATAAATA
* *
39128985 ATGCAAGACATTAATTAAAG
1 ATGCAAGACATAAACTAAAG
39129005 ATGCAA-ACATAAACTAAA
1 ATGCAAGACATAAACTAAA
39129023 CTAAAACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (20 bp):
ATGCAAGACATAAACTAAAG
Found at i:39137240 original size:30 final size:30
Alignment explanation
Indices: 39137204--39137265 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
39137194 TGAATTATTT
*
39137204 TTAAAAATTTAAT-TGCTCTTTTTGTAATTA
1 TTAAAAATTTAATGT-CTCTTTTTGTAAATA
*
39137234 TTAAAAATTTGATGTCTCTTTTTGTAAATA
1 TTAAAAATTTAATGTCTCTTTTTGTAAATA
39137264 TT
1 TT
39137266 TTCAAAAAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.53
Consensus pattern (30 bp):
TTAAAAATTTAATGTCTCTTTTTGTAAATA
Found at i:39142138 original size:17 final size:18
Alignment explanation
Indices: 39142105--39142138 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
39142095 GTGTTTGTCT
*
39142105 TGAAAACATTGTTTGTTG
1 TGAAAACATTATTTGTTG
39142123 TGAAAAC-TTATTTGTT
1 TGAAAACATTATTTGTT
39142139 TCCGTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (18 bp):
TGAAAACATTATTTGTTG
Found at i:39142695 original size:27 final size:27
Alignment explanation
Indices: 39142665--39142724 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
39142655 AGCTGCCAGT
39142665 ACAGT-ATATGTGGCAGAGCCACCAGA-A
1 ACAGTAAT-TGTGGCAGAGCCACCA-ATA
39142692 ACAGTAATTGTGGCAGAGCCACCAATA
1 ACAGTAATTGTGGCAGAGCCACCAATA
39142719 ACAGTA
1 ACAGTA
39142725 CTTCTTCCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.03
27 28 0.90
28 2 0.06
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACAGTAATTGTGGCAGAGCCACCAATA
Found at i:39152888 original size:13 final size:13
Alignment explanation
Indices: 39152853--39152888 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
39152843 ATGCAAACGT
*
39152853 CAAAATTTCCTAA
1 CAAAATTTCTTAA
39152866 CAAAATTTCTTAA
1 CAAAATTTCTTAA
39152879 CAAAATTTCT
1 CAAAATTTCT
39152889 ATACGACCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.36
Consensus pattern (13 bp):
CAAAATTTCTTAA
Found at i:39157114 original size:11 final size:11
Alignment explanation
Indices: 39157098--39157122 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
39157088 TGTCAAAAAA
39157098 ATTATTTTAAT
1 ATTATTTTAAT
39157109 ATTATTTTAAT
1 ATTATTTTAAT
39157120 ATT
1 ATT
39157123 TACAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTTTAAT
Found at i:39166160 original size:15 final size:14
Alignment explanation
Indices: 39166126--39166156 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
39166116 TAGATTTTGT
39166126 TGATTTTTGAGTCA
1 TGATTTTTGAGTCA
39166140 TGATTTTTGAGTCA
1 TGATTTTTGAGTCA
39166154 TGA
1 TGA
39166157 ATTTAGCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.48
Consensus pattern (14 bp):
TGATTTTTGAGTCA
Found at i:39176056 original size:236 final size:236
Alignment explanation
Indices: 39175643--39176117 Score: 932
Period size: 236 Copynumber: 2.0 Consensus size: 236
39175633 GATTAAAATT
39175643 AAAATTTATTATATTATGAATTAATACACATAATTTGGACTGTCTTAGGCTGAAAAATTAATTCA
1 AAAATTTATTATATTATGAATTAATACACATAATTTGGACTGTCTTAGGCTGAAAAATTAATTCA
*
39175708 CCTTGGTGCTTCAAAATTGCTTCTCGGTTTTGCGCTTCTACCAGTGTCGGCGGAGCTGTTTTTTG
66 CCTTGGTGCTTCAAAATTGCTTCTCGGTTTTGCGCTTCTACCAGTGTCGGCGGAGCTGTTTTCTG
39175773 CCCTCTGTGCAAATCTGTCGAAAATAATCAAAATTAATTAAAATTGAACATGTTTATAATTTGAG
131 CCCTCTGTGCAAATCTGTCGAAAATAATCAAAATTAATTAAAATTGAACATGTTTATAATTTGAG
*
39175838 TGCAATATAATTATTTTATAATTATTATATATTTTTTGAAA
196 TGCAATATAATTATTTTATAATTATTATATATTTTTCGAAA
39175879 AAAATTTATTATATTATGAATTAATACACATAATTTGGACTGTCTTAGGCTGAAAAATTAATTCA
1 AAAATTTATTATATTATGAATTAATACACATAATTTGGACTGTCTTAGGCTGAAAAATTAATTCA
39175944 CCTTGGTGCTTCAAAATTGCTTCTCGGTTTTGCGCTTCTACCAGTGTCGGCGGAGCTGTTTTCTG
66 CCTTGGTGCTTCAAAATTGCTTCTCGGTTTTGCGCTTCTACCAGTGTCGGCGGAGCTGTTTTCTG
39176009 CCCTCTGTGCAAATCTGTCGAAAATAATCAAAATTAATTAAAATTGAACATGTTTATAATTTGAG
131 CCCTCTGTGCAAATCTGTCGAAAATAATCAAAATTAATTAAAATTGAACATGTTTATAATTTGAG
39176074 TGCAATATAATTATTTTATAATTATTATATATTTTTCGAAA
196 TGCAATATAATTATTTTATAATTATTATATATTTTTCGAAA
39176115 AAA
1 AAA
39176118 TTTTTACTGA
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
236 237 1.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (236 bp):
AAAATTTATTATATTATGAATTAATACACATAATTTGGACTGTCTTAGGCTGAAAAATTAATTCA
CCTTGGTGCTTCAAAATTGCTTCTCGGTTTTGCGCTTCTACCAGTGTCGGCGGAGCTGTTTTCTG
CCCTCTGTGCAAATCTGTCGAAAATAATCAAAATTAATTAAAATTGAACATGTTTATAATTTGAG
TGCAATATAATTATTTTATAATTATTATATATTTTTCGAAA
Found at i:39177532 original size:36 final size:36
Alignment explanation
Indices: 39177492--39177566 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
39177482 TTCTTTGGCA
*
39177492 TGGTTTAATATGGTCATTTTGGTATTTCGAATTTAG
1 TGGTTTAATATGGTCATTTTGGTATTTCAAATTTAG
39177528 TGGTTTAATATGGTCATTTTGGTATTTCAAATTTAG
1 TGGTTTAATATGGTCATTTTGGTATTTCAAATTTAG
39177564 TGG
1 TGG
39177567 ACATATATGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.49
Consensus pattern (36 bp):
TGGTTTAATATGGTCATTTTGGTATTTCAAATTTAG
Found at i:39177575 original size:36 final size:36
Alignment explanation
Indices: 39177497--39177576 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
39177487 TGGCATGGTT
* **
39177497 TAATATGGTCATTTTGGTATTTCGAATTTAGTGGTT
1 TAATATGGTCATTTTGGTATTTCAAATTTAGTGGCA
39177533 TAATATGGTCATTTTGGTATTTCAAATTTAGTGGACA
1 TAATATGGTCATTTTGGTATTTCAAATTTAGTGG-CA
39177570 T-ATATGG
1 TAATATGG
39177577 CTAATGGTAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
36 39 0.98
37 1 0.03
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.46
Consensus pattern (36 bp):
TAATATGGTCATTTTGGTATTTCAAATTTAGTGGCA
Found at i:39183544 original size:39 final size:38
Alignment explanation
Indices: 39183490--39183712 Score: 270
Period size: 39 Copynumber: 5.7 Consensus size: 38
39183480 TAGAAAACTG
*
39183490 TTGTACTTCGGTACCCCTGAAT-GCACTTACGTGAACCTA
1 TTGTACTTCGGTACCCCTG-ATCGCACTTACGTG-CCCTA
* *
39183529 TTGTACTTCGGTACCCCTGATCGCACTTACATGCCCCA
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCTA
* * *
39183567 GTTGTACTTCGATACCCCTGATCGCACTTAAGTGCCCTTG
1 -TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCC-TA
*
39183607 TTGTACTTCGGT-CCCTCTGATCACACTTACGTGCCCCTA
1 TTGTACTTCGGTACCC-CTGATCGCACTTACGTG-CCCTA
* *
39183646 TTGTACTTCAGTACCCCTGATCGCACTTACGTGCCCTTG
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCC-TA
* *
39183685 TTGTACTTCGCTACCCTTGATCGCACTT
1 TTGTACTTCGGTACCCCTGATCGCACTT
39183713 TCGTTTCGTG
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
38 11 0.07
39 142 0.89
40 6 0.04
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (38 bp):
TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCTA
Found at i:39183618 original size:78 final size:79
Alignment explanation
Indices: 39183489--39183712 Score: 298
Period size: 78 Copynumber: 2.9 Consensus size: 79
39183479 GTAGAAAACT
* * *
39183489 GTTGTACTTCGGTACCCCTGAAT-GCACTTACGTGAACC-TATTGTACTTCGGTACCCCTGATCG
1 GTTGTACTTCGATACCCCTG-ATCGCACTTACGTG-CCCTTGTTGTACTTCGGTACCCCTGATCG
39183552 CACTTACATGCCCC-A
64 CACTTACATGCCCCTA
* *
39183567 GTTGTACTTCGATACCCCTGATCGCACTTAAGTGCCCTTGTTGTACTTCGGT-CCCTCTGATCAC
1 GTTGTACTTCGATACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCGGTACCC-CTGATCGC
*
39183631 ACTTACGTGCCCCTA
65 ACTTACATGCCCCTA
* *
39183646 -TTGTACTTC-AGTACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCGCTACCCTTGATCGC
1 GTTGTACTTCGA-TACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCGGTACCCCTGATCGC
39183709 ACTT
65 ACTT
39183713 TCGTTTCGTG
Statistics
Matches: 130, Mismatches: 10, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
77 8 0.06
78 118 0.91
79 4 0.03
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (79 bp):
GTTGTACTTCGATACCCCTGATCGCACTTACGTGCCCTTGTTGTACTTCGGTACCCCTGATCGCA
CTTACATGCCCCTA
Found at i:39183694 original size:117 final size:117
Alignment explanation
Indices: 39183488--39183712 Score: 337
Period size: 117 Copynumber: 1.9 Consensus size: 117
39183478 AGTAGAAAAC
* *
39183488 TGTTGTACTTCGGTACCCCTGAATGCACTTACGTGAACCTATTGTACTTCGGTACCCCTGATCGC
1 TGTTGTACTTCGGTACCCCTGAATACACTTACGTGAACCTATTGTACTTCAGTACCCCTGATCGC
39183553 ACTTACATGCCCCAGTTGTACTTCGATACCCCTGATCGCACTTAAGTGCCCT
66 ACTTACATGCCCCAGTTGTACTTCGATACCCCTGATCGCACTTAAGTGCCCT
**
39183605 TGTTGTACTTCGGT-CCCTCTG-ATCACACTTACGTGCCCCTATTGTACTTCAGTACCCCTGATC
1 TGTTGTACTTCGGTACCC-CTGAAT-ACACTTACGTGAACCTATTGTACTTCAGTACCCCTGATC
* ** * *
39183668 GCACTTACGTGCCCTTGTTGTACTTCGCTACCCTTGATCGCACTT
64 GCACTTACATGCCCCAGTTGTACTTCGATACCCCTGATCGCACTT
39183713 TCGTTTCGTG
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
116 5 0.05
117 92 0.95
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.33
Consensus pattern (117 bp):
TGTTGTACTTCGGTACCCCTGAATACACTTACGTGAACCTATTGTACTTCAGTACCCCTGATCGC
ACTTACATGCCCCAGTTGTACTTCGATACCCCTGATCGCACTTAAGTGCCCT
Found at i:39184710 original size:18 final size:17
Alignment explanation
Indices: 39184679--39184712 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
39184669 GTGAGTTACA
39184679 TGGGCATGGACATGTGC
1 TGGGCATGGACATGTGC
*
39184696 TGGGACATGGTCATGTG
1 TGGG-CATGGACATGTG
39184713 TCCCTACTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.18, C:0.15, G:0.41, T:0.26
Consensus pattern (17 bp):
TGGGCATGGACATGTGC
Found at i:39188171 original size:70 final size:70
Alignment explanation
Indices: 39188086--39188298 Score: 257
Period size: 70 Copynumber: 3.0 Consensus size: 70
39188076 AGATCATTGG
* * * *
39188086 TGTGCCTAGCACTAGTCGAACGATTTGACAAATTATTACGCCCAGCGCTAGTAGGATAACCGACG
1 TGTGCCCATCACTAGTCGAACGAGTTGACAAATTATTACGCCCAGCGCTAGTAGGATAACTGACG
*
39188151 ATACT
66 ATAGT
* * * *
39188156 TGTGCCCATCACTAGTCGAATGAGTTGACAAATTATTACGCCCAGTGCTACTCA-GATAACTGGC
1 TGTGCCCATCACTAGTCGAACGAGTTGACAAATTATTACGCCCAGCGCTAGT-AGGATAACTGAC
*
39188220 AATAGT
65 GATAGT
* * * * * * *
39188226 TATGTCCATCACTAGTCAAACAAGTTAACAAATTATTGCGCCCAGCGCTAGTCGGATAACTGACG
1 TGTGCCCATCACTAGTCGAACGAGTTGACAAATTATTACGCCCAGCGCTAGTAGGATAACTGACG
39188291 ATAGT
66 ATAGT
39188296 TGT
1 TGT
39188299 CATCCGCAAT
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
70 117 0.99
71 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (70 bp):
TGTGCCCATCACTAGTCGAACGAGTTGACAAATTATTACGCCCAGCGCTAGTAGGATAACTGACG
ATAGT
Found at i:39195590 original size:42 final size:43
Alignment explanation
Indices: 39195542--39195633 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 43
39195532 AATATTATTA
**
39195542 TTTAATATTTACGCTTCAATTATAATATTATATTGAATTTTAG
1 TTTAATATTTACGAGTCAATTATAATATTATATTGAATTTTAG
* *
39195585 -TTAATATTTATGAGTCAATTATAATATTATATTGAATTTTTG
1 TTTAATATTTACGAGTCAATTATAATATTATATTGAATTTTAG
39195627 TTTAATA
1 TTTAATA
39195634 ATTTTTGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 38 0.86
43 6 0.14
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (43 bp):
TTTAATATTTACGAGTCAATTATAATATTATATTGAATTTTAG
Found at i:39201268 original size:15 final size:16
Alignment explanation
Indices: 39201218--39201290 Score: 51
Period size: 15 Copynumber: 4.6 Consensus size: 16
39201208 TATTCTTTTT
39201218 CTTTCTCTTTTCTCTCA
1 CTTTCT-TTTTCTCTCA
** *
39201235 CACTCTCTTT-TCTCA
1 CTTTCTTTTTCTCTCA
*
39201250 ATTTCTTTTTCTCTCA
1 CTTTCTTTTTCTCTCA
* *
39201266 -TTTTTTTCTTCTTTCA
1 CTTTCTTT-TTCTCTCA
*
39201282 GTTTCTTTT
1 CTTTCTTTT
39201291 ATTTTTCTCT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
15 17 0.40
16 16 0.37
17 10 0.23
ACGTcount: A:0.08, C:0.27, G:0.01, T:0.63
Consensus pattern (16 bp):
CTTTCTTTTTCTCTCA
Found at i:39201277 original size:16 final size:17
Alignment explanation
Indices: 39201240--39201289 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
39201230 TCTCACACTC
*
39201240 TCTTTTCTCAATTTCTT
1 TCTTCTCTCAATTTCTT
*
39201257 T-TTCTCTC-ATTTTTT
1 TCTTCTCTCAATTTCTT
* *
39201272 TCTTCTTTCAGTTTCTT
1 TCTTCTCTCAATTTCTT
39201289 T
1 T
39201290 TATTTTTCTC
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 7 0.27
16 12 0.46
17 7 0.27
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.68
Consensus pattern (17 bp):
TCTTCTCTCAATTTCTT
Found at i:39201298 original size:21 final size:21
Alignment explanation
Indices: 39201266--39201308 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
39201256 TTTTCTCTCA
*
39201266 TTTTTTTCTTCTTTCAGTTTC
1 TTTTTTTCTTCTCTCAGTTTC
*
39201287 TTTTATTT-TTCTCTCATTTTC
1 TTTT-TTTCTTCTCTCAGTTTC
39201308 T
1 T
39201309 CTCATTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTTTTCTTCTCTCAGTTTC
Found at i:39214547 original size:22 final size:22
Alignment explanation
Indices: 39214519--39214566 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
39214509 CCACTACCAA
*
39214519 ACCATCATACCACTACCTTAGC
1 ACCATCATACCACAACCTTAGC
* *
39214541 ACCATCATACTACAACCTTTGC
1 ACCATCATACCACAACCTTAGC
39214563 ACCA
1 ACCA
39214567 CCTTGAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.40, G:0.04, T:0.23
Consensus pattern (22 bp):
ACCATCATACCACAACCTTAGC
Found at i:39214908 original size:18 final size:19
Alignment explanation
Indices: 39214885--39214920 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
39214875 TCCTCCAATG
39214885 ATTAGATTCTCAA-AATCC
1 ATTAGATTCTCAACAATCC
*
39214903 ATTAGATTGTCAACAATC
1 ATTAGATTCTCAACAATC
39214921 ATAGCAGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.33
Consensus pattern (19 bp):
ATTAGATTCTCAACAATCC
Found at i:39217234 original size:29 final size:29
Alignment explanation
Indices: 39217202--39217259 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
39217192 AGCCGAAGCT
*
39217202 ATCCCGTTTCATA-TTCGATGGTCATCACC
1 ATCCCGTTTCACAGTT-GATGGTCATCACC
* *
39217231 ATCCCTTTTCACAGTTGATGGTCGTCACC
1 ATCCCGTTTCACAGTTGATGGTCATCACC
39217260 CTCTATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.19, C:0.31, G:0.16, T:0.34
Consensus pattern (29 bp):
ATCCCGTTTCACAGTTGATGGTCATCACC
Found at i:39217248 original size:87 final size:87
Alignment explanation
Indices: 39217129--39217300 Score: 227
Period size: 87 Copynumber: 2.0 Consensus size: 87
39217119 TTTCCATTAA
* * * * * * *
39217129 TCGATTGTCGTCACCATCCCTTTTCATAGTTGATGGTTGTTACCATCCCTTTTCGCAATAGATAG
1 TCGATGGTCATCACCATCCCTTTTCACAGTTGATGGTCGTCACCATCCATTTTCACAATAGATAG
39217194 CCGAAGCTATCCCGTTTCATAT
66 CCGAAGCTATCCCGTTTCATAT
* * * *
39217216 TCGATGGTCATCACCATCCCTTTTCACAGTTGATGGTCGTCACCCTCTATTTTCATAATCGATAG
1 TCGATGGTCATCACCATCCCTTTTCACAGTTGATGGTCGTCACCATCCATTTTCACAATAGATAG
* *
39217281 CCGAAGCTATCTCTTTTCAT
66 CCGAAGCTATCCCGTTTCAT
39217301 TGGTCGATGA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (87 bp):
TCGATGGTCATCACCATCCCTTTTCACAGTTGATGGTCGTCACCATCCATTTTCACAATAGATAG
CCGAAGCTATCCCGTTTCATAT
Found at i:39222358 original size:21 final size:22
Alignment explanation
Indices: 39222329--39222375 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
39222319 CAGAAAGAGT
*
39222329 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
39222351 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
39222372 GAGT
1 GAGT
39222376 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:39225066 original size:23 final size:23
Alignment explanation
Indices: 39225035--39225156 Score: 181
Period size: 23 Copynumber: 5.3 Consensus size: 23
39225025 ATAAGTGCCA
* *
39225035 CACTAATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
39225058 CACTGATATGTAGTCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
39225081 CACTAAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
39225104 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
39225127 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
39225150 CACTGAT
1 CACTGAT
39225157 CAATAACACT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 87 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:39225102 original size:46 final size:46
Alignment explanation
Indices: 39225035--39225156 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
39225025 ATAAGTGCCA
* *
39225035 CACTAATATGTAGCCAAAGCTACCACTGATATGTAGTCGTAGCTAC
1 CACTAATATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
*
39225081 CACTAAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTAATATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
*
39225127 CACTGATATGTAGCCGAAGCTACCACTGAT
1 CACTAATATGTAGCCGAAGCTACCACTGAT
39225157 CAATAACACT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (46 bp):
CACTAATATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:39238374 original size:40 final size:39
Alignment explanation
Indices: 39238310--39238521 Score: 228
Period size: 40 Copynumber: 5.3 Consensus size: 39
39238300 TCTTCGGAAT
* * *
39238310 TTAG-CCGGATATAACCACAAGCACAACTGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
** *
39238349 TTAGCTTGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
39238389 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
39238429 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
39238469 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
*
39238509 TTAGCTCGGATAT
1 TTAGCCCGGATAT
39238522 CATTCAAATG
Statistics
Matches: 142, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
39 10 0.07
40 125 0.88
41 7 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:39238448 original size:80 final size:80
Alignment explanation
Indices: 39238310--39238521 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 80
39238300 TCTTCGGAAT
* * * * * ** *
39238310 TTAG-CCGGATATAACCACAAGCACAACTGCCTTCGGGTCTTAGCTTGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
39238374 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
39238389 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
39238454 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
39238469 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCTCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
39238522 CATTCAAATG
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 4 0.03
80 115 0.97
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:39245077 original size:27 final size:27
Alignment explanation
Indices: 39245047--39245224 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
39245037 ATATTGAGTC
* * * *
39245047 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
39245074 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
39245101 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
39245129 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
39245156 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
39245183 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
39245210 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
39245225 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:39245186 original size:82 final size:81
Alignment explanation
Indices: 39245068--39245223 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
39245058 TGCTATATAA
* *
39245068 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
39245133 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
39245150 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
39245214 CACTTAGTGC
65 CACTTAGTGC
39245224 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:39253619 original size:27 final size:27
Alignment explanation
Indices: 39253588--39253765 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
39253578 TAAATTGTAC
39253588 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
39253615 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
39253641 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
39253669 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
39253697 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
39253724 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
39253751 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
39253766 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:39253702 original size:82 final size:81
Alignment explanation
Indices: 39253589--39253744 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
39253579 AAATTGTACA
* *
39253589 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
39253653 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
39253670 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
39253735 TGCGAGTTGA
65 TGCGAATTGA
39253745 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:39253756 original size:82 final size:81
Alignment explanation
Indices: 39253585--39253765 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
39253575 GATTAAATTG
* *
39253585 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
39253650 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
39253666 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
39253730 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
39253748 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
39253766 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:39261913 original size:27 final size:27
Alignment explanation
Indices: 39261883--39262060 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
39261873 ATATTGAGTC
* * * *
39261883 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
39261910 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
39261937 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
39261965 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
39261992 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
39262019 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
39262046 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
39262061 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:39262022 original size:82 final size:81
Alignment explanation
Indices: 39261904--39262059 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
39261894 TGCTATATAA
* *
39261904 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
39261969 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
39261986 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
39262050 CACTTAGTGC
65 CACTTAGTGC
39262060 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:39266056 original size:36 final size:36
Alignment explanation
Indices: 39265993--39266062 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
39265983 ATTAAACTCT
** *
39265993 ATTCAGTTAAGCAACCTTTCGGTTCTATTTTGACTG
1 ATTCAGTTAAGCAACCTTTCGAATCTATTCTGACTG
*
39266029 ATTCAGTTCAGCAACCTTTCGAATCTATTCTGAC
1 ATTCAGTTAAGCAACCTTTCGAATCTATTCTGAC
39266063 AAATGCGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (36 bp):
ATTCAGTTAAGCAACCTTTCGAATCTATTCTGACTG
Found at i:39273522 original size:25 final size:26
Alignment explanation
Indices: 39273487--39273542 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
39273477 TTTGAGCTGC
* *
39273487 ATATGAGCAAA-ATGAGTTTGTTTTG
1 ATATGAGCAAATATGAATATGTTTTG
39273512 AATATGA-CAAATATGAATATGTTTTG
1 -ATATGAGCAAATATGAATATGTTTTG
39273538 ATATG
1 ATATG
39273543 TTGGATTGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.39
Consensus pattern (26 bp):
ATATGAGCAAATATGAATATGTTTTG
Found at i:39276272 original size:12 final size:13
Alignment explanation
Indices: 39276248--39276276 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
39276238 GGGCTATAAC
39276248 TATTGCATTTATT
1 TATTGCATTTATT
39276261 TATTGC-TTTATT
1 TATTGCATTTATT
39276273 TATT
1 TATT
39276277 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:39281400 original size:34 final size:34
Alignment explanation
Indices: 39281357--39281426 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
39281347 ATTTTGATAC
*
39281357 AGTCAAACGTACACCGTAACTAGTTATTCTATAA
1 AGTCAAACGTACACCATAACTAGTTATTCTATAA
* * *
39281391 AGTCAAACGTACACCATAATTGGTTGTTCTATAA
1 AGTCAAACGTACACCATAACTAGTTATTCTATAA
39281425 AG
1 AG
39281427 CCTGATGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (34 bp):
AGTCAAACGTACACCATAACTAGTTATTCTATAA
Found at i:39284702 original size:13 final size:14
Alignment explanation
Indices: 39284684--39284712 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
39284674 TTTCTACTTG
39284684 TTTAA-TTTTCTTT
1 TTTAATTTTTCTTT
39284697 TTTAATTTTTCTTT
1 TTTAATTTTTCTTT
39284711 TT
1 TT
39284713 GCACTTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTAATTTTTCTTT
Found at i:39292110 original size:14 final size:15
Alignment explanation
Indices: 39292087--39292125 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
39292077 TAAACTATGC
39292087 TAAA-AAAATAAAGG
1 TAAATAAAATAAAGG
39292101 -AAATAAAAT-AAGG
1 TAAATAAAATAAAGG
39292114 TAAAT-AAATAAA
1 TAAATAAAATAAA
39292126 ATGTGAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (15 bp):
TAAATAAAATAAAGG
Found at i:39292894 original size:22 final size:22
Alignment explanation
Indices: 39292862--39292916 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
39292852 TACAGAGGCA
* *
39292862 ATGTTGCGACACCCCAAGTCCT
1 ATGTTGTGACACACCAAGTCCT
39292884 ATGTTGTGACACACCAAGTCCT
1 ATGTTGTGACACACCAAGTCCT
39292906 ATGTTGTGACA
1 ATGTTGTGACA
39292917 TCCTTAGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (22 bp):
ATGTTGTGACACACCAAGTCCT
Found at i:39297432 original size:40 final size:41
Alignment explanation
Indices: 39297348--39297540 Score: 155
Period size: 40 Copynumber: 4.7 Consensus size: 41
39297338 TTGAATGATG
* * * * *
39297348 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGATCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
39297388 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
39297428 TCCGGGTTAAGTCCCGAGTCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAA-----GA-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
39297475 TCAGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGATCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
39297516 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGGTTAAGATCCCGAAGGCATTTG
39297541 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 17, Indels: 20
0.77 0.10 0.12
Matches are distributed among these distances:
40 79 0.63
41 10 0.08
42 1 0.01
45 2 0.02
46 1 0.01
47 33 0.26
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGTTAAGATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:39297482 original size:47 final size:47
Alignment explanation
Indices: 39297401--39297491 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
39297391 GGACTAAGAT
* *
39297401 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGTTAAGTCCCGAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCAGGGTTAAGTCCCGAGTC
* *
39297448 CCGATGGCATTTGTGCGAGTTACTAAATCAGGGTTAAGTCCCGA
1 CCGAAGGCATTTGTGCGAGATACTAAATCAGGGTTAAGTCCCGA
39297492 AGGCATTTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (47 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCAGGGTTAAGTCCCGAGTC
Found at i:39300669 original size:36 final size:35
Alignment explanation
Indices: 39300622--39300791 Score: 153
Period size: 36 Copynumber: 4.7 Consensus size: 35
39300612 TTTAACACAG
*
39300622 TGACATGCTTAACATGCAAATCAGAATCAGAAATAA
1 TGACATGCTTAACATGCGAATCAGAATCA-AAATAA
* **
39300658 TGACATGCTTAACATGTGAATCAGAAAAAAAAATAA
1 TGACATGCTTAACATGCGAATCAG-AATCAAAATAA
* * * * *
39300694 TGGCATGTTTAACATGCGAGTCAAAATCAAATTAA
1 TGACATGCTTAACATGCGAATCAGAATCAAAATAA
* *
39300729 T-AGCATGCTTAACATGCGAATCAGAATATCATAATAT
1 TGA-CATGCTTAACATGCGAATCAG-A-ATCAAAATAA
* * * *
39300766 TAACATGTTTAACATGTGAATTAGAA
1 TGACATGCTTAACATGCGAATCAGAA
39300792 CATCAACAAT
Statistics
Matches: 107, Mismatches: 22, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
35 28 0.26
36 49 0.46
37 29 0.27
38 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.27
Consensus pattern (35 bp):
TGACATGCTTAACATGCGAATCAGAATCAAAATAA
Found at i:39300776 original size:72 final size:72
Alignment explanation
Indices: 39300624--39300781 Score: 176
Period size: 72 Copynumber: 2.2 Consensus size: 72
39300614 TAACACAGTG
* * *
39300624 ACATGCTTAACATGCAAATCAGAATCAGAAATAATGACATGCTTAACATGTGAATCAGAAAAAAA
1 ACATGTTTAACATGCAAATCAAAATCAGAAATAATGACATGCTTAACATGCGAATCAGAAAAAAA
*
39300689 AATAATG
66 AATAATA
* * * * **
39300696 GCATGTTTAACATGCGAGTCAAAATCA-AATTAAT-AGCATGCTTAACATGCGAATCAGAATATC
1 ACATGTTTAACATGCAAATCAAAATCAGAAATAATGA-CATGCTTAACATGCGAATCAGAA-AAA
* *
39300759 ATAATATTA
64 AAAATAATA
39300768 ACATGTTTAACATG
1 ACATGTTTAACATG
39300782 TGAATTAGAA
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
70 1 0.01
71 28 0.39
72 42 0.59
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.27
Consensus pattern (72 bp):
ACATGTTTAACATGCAAATCAAAATCAGAAATAATGACATGCTTAACATGCGAATCAGAAAAAAA
AATAATA
Found at i:39301918 original size:19 final size:19
Alignment explanation
Indices: 39301894--39301931 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
39301884 AAAAAGAGAA
*
39301894 GGGAAGAAATATGTTTTAG
1 GGGAAGAAATATGTCTTAG
39301913 GGGAAGAAATATGTCTTAG
1 GGGAAGAAATATGTCTTAG
39301932 ATAAATAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.29
Consensus pattern (19 bp):
GGGAAGAAATATGTCTTAG
Found at i:39304892 original size:26 final size:25
Alignment explanation
Indices: 39304826--39304892 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
39304816 ATATGTTATA
39304826 TATTATTTATTTATTTTAAACTATTT
1 TATTATTT-TTTATTTTAAACTATTT
* * * *
39304852 TATTATTATTCATTTT-AAGTTTTCT
1 TATTATTTTTTATTTTAAACTATT-T
39304877 TATGTATTTTTTATTT
1 TAT-TATTTTTTATTT
39304893 GAAATCTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 5 0.15
25 11 0.33
26 17 0.52
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.67
Consensus pattern (25 bp):
TATTATTTTTTATTTTAAACTATTT
Found at i:39309662 original size:16 final size:16
Alignment explanation
Indices: 39309634--39309677 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
39309624 AACTTCACTT
*
39309634 AAAAAAAGGAAAAA-A
1 AAAAAAAGAAAAAAGA
**
39309649 ATGAAAAGAAAAAAGA
1 AAAAAAAGAAAAAAGA
39309665 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
39309678 TAAGGAGAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (16 bp):
AAAAAAAGAAAAAAGA
Found at i:39309677 original size:22 final size:22
Alignment explanation
Indices: 39309635--39309676 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
39309625 ACTTCACTTA
*
39309635 AAAAAAGGAAAAAAATGAAAAG
1 AAAAAAGGAAAAAAAAGAAAAG
39309657 AAAAAA-GAAAAAAAAGAAAA
1 AAAAAAGGAAAAAAAAGAAAA
39309677 ATAAGGAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAAAGGAAAAAAAAGAAAAG
Found at i:39310910 original size:143 final size:143
Alignment explanation
Indices: 39310575--39311215 Score: 881
Period size: 143 Copynumber: 4.5 Consensus size: 143
39310565 GATTGAAGTC
* *
39310575 ATTATGGTGGATCTTATCTTCCTAAAGTTACAGTGGAGCTGATTGAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * * * *
39310640 CTGAACTTGTAGCAAAGCAAACTGAAGACGGCGAATCTTATTTCCTTGACGTTGTAGTGGAAC-G
66 CTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAG
*
39310704 ATTAAAGCTACCA
131 ATTAAAGCTACAA
* *
39310717 ATTATGGCAGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* *
39310782 CTGAAGTTGCAGCGAAGTAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAA
66 CTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAG
*
39310847 ATTAAAGCTACCA
131 ATTAAAGCTACAA
* * * *
39310860 ATTATGGCGGATCTTATCTTTCTAAAGTTACAGTGGAGCAGATTGGAGCCACAAGCCTTATATCC
1 ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * *
39310925 CTGAAGTTGTAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCGTTGCAATAGAACAG
66 CTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAG
39310990 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * * * * * *
39311003 ATTGTGGCGGATCTTATCTTCTTAAAATTGCAGTGTAGTAGATTAAAGCCACCAGCCTTATCTCC
1 ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
* * * * * *
39311068 CTGAAGTTGCAGCGGAGTAGACTGAAGACAGCGAATCTTACTTCCCTAGCATTGGAGTGGAACAG
66 CTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAG
39311133 ATTAAAGCTACAA
131 ATTAAAGCTACAA
* * *
39311146 ATTATGGCGGATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCGATCC-TATCTC
1 ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACC-AGCCTTATCTC
39311210 CCTGAA
65 CCTGAA
39311216 ATTGTAGTAG
Statistics
Matches: 440, Mismatches: 57, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
142 115 0.26
143 322 0.73
144 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (143 bp):
ATTATGGCGGATCTTATCTTCCTAAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCC
CTGAAGTTGCAGCGAAGCAGACTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAG
ATTAAAGCTACAA
Found at i:39312842 original size:22 final size:22
Alignment explanation
Indices: 39312817--39312879 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
39312807 GTTTATTTTT
39312817 ATTATATTATT-TATTTTAAACA
1 ATTATA-TATTATATTTTAAACA
*
39312839 ATTATATATTATCTTTTAAA-A
1 ATTATATATTATATTTTAAACA
*
39312860 TTCTCATATATTAT-TTTTAA
1 AT-T-ATATATTATATTTTAA
39312880 TAAAGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
21 6 0.17
22 21 0.58
23 9 0.25
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTATATATTATATTTTAAACA
Found at i:39312974 original size:26 final size:24
Alignment explanation
Indices: 39312908--39312991 Score: 69
Period size: 26 Copynumber: 3.3 Consensus size: 24
39312898 ATTTGTTATA
*
39312908 TATTATTTATTTATTTTAAACTATTT
1 TATTATTT-TTTATTTT-AAGTATTT
* * *
39312934 TATTATTATTCATTTTAAGTTTTCT
1 TATTATTTTTTATTTTAAGTATT-T
* *
39312959 TATGTATTTTTTATTTGAAGTCTTT
1 TAT-TATTTTTTATTTTAAGTATTT
*
39312984 TATCATTT
1 TATTATTT
39312992 ATTTTGAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
24 9 0.19
25 15 0.32
26 23 0.49
ACGTcount: A:0.25, C:0.06, G:0.05, T:0.64
Consensus pattern (24 bp):
TATTATTTTTTATTTTAAGTATTT
Found at i:39314197 original size:19 final size:19
Alignment explanation
Indices: 39314155--39314199 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
39314145 TTTTACGGAA
*
39314155 AATGTTTTATACATTTTCC
1 AATGTTTTATACATTTTAC
*
39314174 AATGTTTTATATATTTTAC
1 AATGTTTTATACATTTTAC
*
39314193 TATGTTT
1 AATGTTT
39314200 ACTTCAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.58
Consensus pattern (19 bp):
AATGTTTTATACATTTTAC
Found at i:39314370 original size:9 final size:9
Alignment explanation
Indices: 39314356--39314380 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
39314346 TTTATTTTTA
39314356 AAAATATTT
1 AAAATATTT
39314365 AAAATATTT
1 AAAATATTT
39314374 AAAATAT
1 AAAATAT
39314381 CAATATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAATATTT
Found at i:39324353 original size:101 final size:102
Alignment explanation
Indices: 39324234--39324418 Score: 313
Period size: 101 Copynumber: 1.8 Consensus size: 102
39324224 AAAGTGATGG
*
39324234 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTAGA-A-TGATAGGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGATAGTGAT-GGTCACATGTGTAG
39324296 TACTATGTGCAGGCTACTATGCGTACCGGATAGGTTCGA
64 TACTATGTGCAGGCTACTATGCGTACCGGATAGGTTCGA
*
39324335 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
39324400 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
39324419 TGAACTGGTA
Statistics
Matches: 79, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
101 39 0.49
102 36 0.46
103 4 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGGTTCGA
Found at i:39324364 original size:51 final size:50
Alignment explanation
Indices: 39324229--39324416 Score: 243
Period size: 51 Copynumber: 3.7 Consensus size: 50
39324219 AAGTGAAAGT
* ** *
39324229 GATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTAGA-AT
1 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG
* * *
39324278 GATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG
1 GAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG
* * * *
39324329 GTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAG
1 GAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG
39324380 TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -GATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
39324417 TGTGAACTGG
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 3 0.03
50 38 0.32
51 75 0.64
52 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (50 bp):
GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG
Found at i:39327718 original size:8 final size:8
Alignment explanation
Indices: 39327705--39327733 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
39327695 TAGAAATTTT
39327705 TGCATTCA
1 TGCATTCA
39327713 TGCATTCA
1 TGCATTCA
39327721 TGCATTCA
1 TGCATTCA
39327729 TGCAT
1 TGCAT
39327734 ATTTGCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (8 bp):
TGCATTCA
Found at i:39331266 original size:20 final size:23
Alignment explanation
Indices: 39331227--39331267 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
39331217 AATGCAATTT
39331227 TAAAAGTGCTAACTAAAATGTCC
1 TAAAAGTGCTAACTAAAATGTCC
39331250 TAAAA-TGC-AAC-AAAATGT
1 TAAAAGTGCTAACTAAAATGT
39331268 ACTTAAGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 3 0.17
23 5 0.28
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (23 bp):
TAAAAGTGCTAACTAAAATGTCC
Found at i:39333422 original size:8 final size:8
Alignment explanation
Indices: 39333409--39333436 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
39333399 TTCTGTGCTG
39333409 TTTTAGAA
1 TTTTAGAA
39333417 TTTTAGAA
1 TTTTAGAA
39333425 TTTTAGAA
1 TTTTAGAA
39333433 TTTT
1 TTTT
39333437 TGGATAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (8 bp):
TTTTAGAA
Found at i:39333494 original size:90 final size:90
Alignment explanation
Indices: 39333341--39333511 Score: 315
Period size: 90 Copynumber: 1.9 Consensus size: 90
39333331 GGATTGTATT
*
39333341 AATTTTTGGATAAACTTTAATTTTTTAGGGGTATGAGCAACAATGGATTTTTATTTGTTTCTGTG
1 AATTTTTGGATAAACTTTAATTTTTTAGGGGTATGAGCAACAATAGATTTTTATTTGTTTCTGTG
39333406 CTGTTTTAGAATTTTAGAATTTTAG
66 CTGTTTTAGAATTTTAGAATTTTAG
*
39333431 AATTTTTGGATAAACTTTAATTTTTTAGGGGTATGAGCAGCAATAGATTTTTATTTGTTTCTGTG
1 AATTTTTGGATAAACTTTAATTTTTTAGGGGTATGAGCAACAATAGATTTTTATTTGTTTCTGTG
*
39333496 TTGTTTTAGAATTTTA
66 CTGTTTTAGAATTTTA
39333512 TATGTAGGAA
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (90 bp):
AATTTTTGGATAAACTTTAATTTTTTAGGGGTATGAGCAACAATAGATTTTTATTTGTTTCTGTG
CTGTTTTAGAATTTTAGAATTTTAG
Found at i:39343884 original size:40 final size:40
Alignment explanation
Indices: 39343829--39343972 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
39343819 ATCTTTATTG
*
39343829 GCATTAGCAGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
* * *
39343869 GCATTAGTGGCGCTTTTTGAAAAATGCCGCTATAGATTGA
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
*
39343909 GCATTAGCGGCGCTTATTGAAAAATGCCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
* *
39343949 CCATTAGCGGTGCTTTTTGAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAA
39343973 CATCGTAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 93 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
Found at i:39344124 original size:40 final size:40
Alignment explanation
Indices: 39343829--39344127 Score: 177
Period size: 40 Copynumber: 7.6 Consensus size: 40
39343819 ATCTTTATTG
* ** *
39343829 GCATTAGCAGCGCTTTTTGAAAAATGCCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* ** *
39343869 GCATTAGTGGCGCTTTTTGAAAAATGCCGCTATAGATTGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* ** *
39343909 GCATTAGCGGCGCTTATTGAAAAATGCCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* * * * * **
39343949 CCATTAGCGGTGCTTTTTGAAAAACATCG-TAAAAAAATTAA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCT--ATAGATCGA
** * *** *
39343990 GCACAATGTCGACG-TTTTATG---TTGA--GCTTTAG-T-G-
1 GCATTA-G-CGGCGCTTTT-TGAAAAACACCGCTATAGATCGA
* * * *
39344024 GCATTAGCGGCGCTTTCTGAAAAACGCCGTTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
* *
39344064 GCATTAGCGGCGCTTCTTGAAAAACACTGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
**
39344104 GCATTAGCGGCATTTTTTGAAAAA
1 GCATTAGCGGCGCTTTTTGAAAAA
39344128 TGCCACAAAA
Statistics
Matches: 194, Mismatches: 50, Indels: 30
0.71 0.18 0.11
Matches are distributed among these distances:
32 6 0.03
33 4 0.02
34 4 0.02
36 1 0.01
37 6 0.03
38 2 0.01
39 3 0.02
40 151 0.78
41 7 0.04
42 5 0.03
43 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
Found at i:39344126 original size:195 final size:194
Alignment explanation
Indices: 39343756--39344131 Score: 529
Period size: 195 Copynumber: 1.9 Consensus size: 194
39343746 ATAGATTTTG
* * *
39343756 CATTCGCGGCGCTTTTTGAAAAACACCGAAAAAATTTAAGCACAACGCCATCATTTTATGTTGAT
1 CATTAGCGGCGCTTTTTGAAAAACACCGAAAAAAATTAAGCACAACGCCATCATTTTATGTTGAG
* * * * *
39343821 CTTTATTGGCATTAGCAGCGCTTTTTGAAAAATGCCGCTATAGGTCGAGCATTAGTGGCGCTTTT
66 CTTTAGTGGCATTAGCAGCGCTTTCTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGCGCTTCT
** * *
39343886 TGAAAAATGCCGCTATAGATTGAGCATTAGCGGCGCTTATTGAAAAATGCCGCTATAGGTCGAC
131 TGAAAAACACCGCTATAGATCGAGCATTAGCGGCACTTATTGAAAAATGCCGCTATAGGTCGAC
* * * * *
39343950 CATTAGCGGTGCTTTTTGAAAAACATCGTAAAAAAATTAAGCACAATGTCGA-CGTTTTATGTTG
1 CATTAGCGGCGCTTTTTGAAAAACACCG-AAAAAAATTAAGCACAACG-CCATCATTTTATGTTG
* *
39344014 AGCTTTAGTGGCATTAGCGGCGCTTTCTGAAAAACGCCGTTATAGGTCGAGCATTAGCGGCGCTT
64 AGCTTTAGTGGCATTAGCAGCGCTTTCTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGCGCTT
* * *
39344079 CTTGAAAAACACTGCTATAGATCGAGCATTAGCGGCATTTTTTGAAAAATGCC
129 CTTGAAAAACACCGCTATAGATCGAGCATTAGCGGCACTTATTGAAAAATGCC
39344132 ACAAAAATTC
Statistics
Matches: 158, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
194 25 0.16
195 131 0.83
196 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (194 bp):
CATTAGCGGCGCTTTTTGAAAAACACCGAAAAAAATTAAGCACAACGCCATCATTTTATGTTGAG
CTTTAGTGGCATTAGCAGCGCTTTCTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGCGCTTCT
TGAAAAACACCGCTATAGATCGAGCATTAGCGGCACTTATTGAAAAATGCCGCTATAGGTCGAC
Found at i:39344561 original size:7 final size:7
Alignment explanation
Indices: 39344549--39344697 Score: 97
Period size: 7 Copynumber: 20.9 Consensus size: 7
39344539 TGTCATTATA
39344549 GTTTAGG
1 GTTTAGG
39344556 GTTTAGG
1 GTTTAGG
39344563 GTTTAGG
1 GTTTAGG
*
39344570 GTTTAAG
1 GTTTAGG
*
39344577 ATTTAGG
1 GTTTAGG
39344584 AGTTACTA--
1 -GTT--TAGG
* *
39344592 TTTTAAG
1 GTTTAGG
*
39344599 GTTTATG
1 GTTTAGG
*
39344606 GATTATGG
1 GTTTA-GG
39344614 GTTTAGG
1 GTTTAGG
* *
39344621 GATTATG
1 GTTTAGG
*
39344628 GTTTATG
1 GTTTAGG
*
39344635 GTTTATG
1 GTTTAGG
*
39344642 GTTTATG
1 GTTTAGG
*
39344649 GTTTAAG
1 GTTTAGG
39344656 GTTTAAGG
1 GTTT-AGG
*
39344664 GTTAAGG
1 GTTTAGG
*
39344671 GTTAAGG
1 GTTTAGG
39344678 G-TTAGAG
1 GTTTAG-G
39344685 GTTTAGG
1 GTTTAGG
39344692 GTTTAG
1 GTTTAG
39344698 ATTAATTAGT
Statistics
Matches: 116, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
5 2 0.02
6 3 0.03
7 93 0.80
8 16 0.14
10 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.34, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:39345588 original size:20 final size:20
Alignment explanation
Indices: 39345560--39345602 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
39345550 GTCATTTTAT
39345560 CCCCAAATTTCACCCTGAAA
1 CCCCAAATTTCACCCTGAAA
* *
39345580 CCCCTAATTTCCCCCTGAAA
1 CCCCAAATTTCACCCTGAAA
39345600 CCC
1 CCC
39345603 TTAACTTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.28, C:0.47, G:0.05, T:0.21
Consensus pattern (20 bp):
CCCCAAATTTCACCCTGAAA
Found at i:39346257 original size:3 final size:3
Alignment explanation
Indices: 39346249--39346280 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
39346239 TGAACACTAA
39346249 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
39346281 GGAATACTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:39352954 original size:8 final size:9
Alignment explanation
Indices: 39352940--39352994 Score: 62
Period size: 9 Copynumber: 6.3 Consensus size: 9
39352930 AACTAAGGTC
39352940 AATTTTTAT
1 AATTTTTAT
39352949 -ATTTTTAT
1 AATTTTTAT
* *
39352957 AAATTTAAT
1 AATTTTTAT
39352966 AATTTTT-T
1 AATTTTTAT
39352974 -ATTTTTAT
1 AATTTTTAT
39352982 AATTTTTTAT
1 AA-TTTTTAT
39352992 AAT
1 AAT
39352995 ATTCTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 6 0.16
8 10 0.26
9 13 0.34
10 9 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:39352985 original size:16 final size:16
Alignment explanation
Indices: 39352941--39352991 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 16
39352931 ACTAAGGTCA
39352941 ATTTTTAT-ATTTTTAT
1 ATTTTTATAATTTTT-T
* *
39352957 AAATTTAATAATTTTTT
1 -ATTTTTATAATTTTTT
39352974 ATTTTTATAATTTTTT
1 ATTTTTATAATTTTTT
39352990 AT
1 AT
39352992 AATATTCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 16 0.55
17 7 0.24
18 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTTTTATAATTTTTT
Found at i:39353004 original size:12 final size:11
Alignment explanation
Indices: 39352973--39353011 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
39352963 AATAATTTTT
39352973 TATTTTTATAA
1 TATTTTTATAA
39352984 T-TTTTTATAA
1 TATTTTTATAA
39352994 TATTCTTTATATA
1 TATT-TTTATA-A
39353007 TATTT
1 TATTT
39353012 AAAATAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.40
11 3 0.12
12 7 0.28
13 5 0.20
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TATTTTTATAA
Found at i:39354155 original size:19 final size:19
Alignment explanation
Indices: 39354131--39354168 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
39354121 TCTTATAAAA
*
39354131 CTAATTAGAAATTTTTATT
1 CTAATTAGAAAATTTTATT
39354150 CTAATTAGAAAATTTTATT
1 CTAATTAGAAAATTTTATT
39354169 AATTACAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (19 bp):
CTAATTAGAAAATTTTATT
Found at i:39357430 original size:110 final size:110
Alignment explanation
Indices: 39357237--39357509 Score: 332
Period size: 110 Copynumber: 2.5 Consensus size: 110
39357227 TTATAATGCT
* * ** *
39357237 AATCAGACTAGTAGTTCATGACATGAAGATATGTGTAAGACCATGTGGTAGAGACCCATGACATT
1 AATCAGACTGGTAGATCACAACATGAAGATATGTGTAAGACCATGTGGTAGAAACCCATGACATT
**
39357302 ATATGACAATGAGGATATTCATGGTGTAGCCTATGGTGAGATGTA
66 ATATGACAATGAGGATATTCATGGTGTAGCCTACAGTGAGATGTA
* * * *
39357347 AATCAGACTGGTAGATCACAACATTAAGATATGTGTAAGACCACGTGGTATAAACCCATGGCATT
1 AATCAGACTGGTAGATCACAACATGAAGATATGTGTAAGACCATGTGGTAGAAACCCATGACATT
** * * *
39357412 ATATGACAATGAGGATATTCATTTTGTATCGTCCAGTGAGATGTA
66 ATATGACAATGAGGATATTCATGGTGTAGCCTACAGTGAGATGTA
* * * * * *
39357457 AA-CCGAACTGTTGGATCACAATATGAAGATATGTATAAGACCATGTGGGAGAA
1 AATCAG-ACTGGTAGATCACAACATGAAGATATGTGTAAGACCATGTGGTAGAA
39357510 GCCCCACGGT
Statistics
Matches: 137, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
109 2 0.01
110 135 0.99
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.27
Consensus pattern (110 bp):
AATCAGACTGGTAGATCACAACATGAAGATATGTGTAAGACCATGTGGTAGAAACCCATGACATT
ATATGACAATGAGGATATTCATGGTGTAGCCTACAGTGAGATGTA
Found at i:39361617 original size:114 final size:114
Alignment explanation
Indices: 39361417--39361633 Score: 416
Period size: 114 Copynumber: 1.9 Consensus size: 114
39361407 TTGTTAAACC
39361417 CTTATGCAAATTATTGGAGAAGGATACAACATTCAAATTTGATGAAGAATGTTTGAGAGATTTGA
1 CTTATGCAAATTATTGGAGAAGGATACAACATTCAAATTTGATGAAGAATGTTTGAGAGATTTGA
*
39361482 ATGATTTGAAGAATCGATTAGTTTTAGCACCAATTATCATCACACAGGA
66 ATGATTTGAAGAATCGATTAGTTTCAGCACCAATTATCATCACACAGGA
*
39361531 CTTATGCAAATTATTGGAGAAGGATACAACATTCAAATTTGATGAAGAATGTTTGAGAGATTTTA
1 CTTATGCAAATTATTGGAGAAGGATACAACATTCAAATTTGATGAAGAATGTTTGAGAGATTTGA
39361596 ATGATTTGAAGAATCGATTAGTTTCAGCACCAATTATC
66 ATGATTTGAAGAATCGATTAGTTTCAGCACCAATTATC
39361634 GTTACACGGG
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 101 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (114 bp):
CTTATGCAAATTATTGGAGAAGGATACAACATTCAAATTTGATGAAGAATGTTTGAGAGATTTGA
ATGATTTGAAGAATCGATTAGTTTCAGCACCAATTATCATCACACAGGA
Found at i:39363830 original size:17 final size:17
Alignment explanation
Indices: 39363787--39363831 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
39363777 ATAAAAAATA
*
39363787 ATATATTATTATATATT
1 ATATTTTATTATATATT
*
39363804 ATATTATATTATATATT
1 ATATTTTATTATATATT
39363821 A-ATTTTTATTA
1 ATA-TTTTATTA
39363832 ACCTTGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.04
17 23 0.96
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATATTTTATTATATATT
Found at i:39389788 original size:33 final size:33
Alignment explanation
Indices: 39389753--39389818 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
39389743 ACTGATTATT
39389753 AAATGAATAAGAAAATATT-TAAAAATATATTTTA
1 AAAT-AATAA-AAAATATTATAAAAATATATTTTA
* * *
39389787 AAATAATAAATATTATTATAATAATATATTTT
1 AAATAATAAAAAATATTATAAAAATATATTTT
39389819 CTTTCATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 6 0.21
33 18 0.64
34 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (33 bp):
AAATAATAAAAAATATTATAAAAATATATTTTA
Found at i:39389811 original size:18 final size:17
Alignment explanation
Indices: 39389779--39389812 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
39389769 ATTTAAAAAT
39389779 ATATTTTAAAATAATAA
1 ATATTTTAAAATAATAA
*
39389796 ATATTATTATAATAATA
1 ATATT-TTAAAATAATA
39389813 TATTTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATTTTAAAATAATAA
Found at i:39390904 original size:48 final size:50
Alignment explanation
Indices: 39390809--39390904 Score: 115
Period size: 48 Copynumber: 1.9 Consensus size: 50
39390799 CACAGTTTTT
* * *
39390809 CTTCCAAAAATATTTTTGGAGTGAGAAGTATTTTTTAAAAGTAATAAAAAA
1 CTTCCAAAAATACTTTTAGAGT-AGAAGTATTTTTTAAAAGCAATAAAAAA
* **
39390860 CTTCC-AAAATACTTTTAGAGT-GAAGTGTTTTTTTTAAGCAATAAA
1 CTTCCAAAAATACTTTTAGAGTAGAAGTATTTTTTAAAAGCAATAAA
39390905 GAATTAACCT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
48 20 0.51
50 14 0.36
51 5 0.13
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.38
Consensus pattern (50 bp):
CTTCCAAAAATACTTTTAGAGTAGAAGTATTTTTTAAAAGCAATAAAAAA
Found at i:39393363 original size:16 final size:16
Alignment explanation
Indices: 39393342--39393376 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
39393332 TATCGGTTAG
39393342 AATAAAAAATATT-AAA
1 AATAAAAAA-ATTCAAA
39393358 AATAAAAAAATTCAAA
1 AATAAAAAAATTCAAA
39393374 AAT
1 AAT
39393377 TTCGGTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAAAAATTCAAA
Found at i:39394655 original size:20 final size:20
Alignment explanation
Indices: 39394610--39394659 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
39394600 ATGCAATACT
39394610 AAAATTTTTAACAAATATCG
1 AAAATTTTTAACAAATATCG
* *
39394630 -ATATTTTTAACATGATAT-G
1 AAAATTTTTAACA-AATATCG
39394649 AAAATTTTTAA
1 AAAATTTTTAA
39394660 TTGATGCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (20 bp):
AAAATTTTTAACAAATATCG
Found at i:39394748 original size:20 final size:20
Alignment explanation
Indices: 39394723--39394772 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
39394713 ATACACAGAG
39394723 AAATTTTGATACT-CGATTAA
1 AAATTTTGATACTGCG-TTAA
*
39394743 AAA-TTTGATACTGCGTTAG
1 AAATTTTGATACTGCGTTAA
*
39394762 AAATATTGATA
1 AAATTTTGATA
39394773 TCACGTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (20 bp):
AAATTTTGATACTGCGTTAA
Found at i:39397780 original size:50 final size:49
Alignment explanation
Indices: 39397725--39397868 Score: 135
Period size: 49 Copynumber: 2.9 Consensus size: 49
39397715 CATTGAGATT
* * * * *
39397725 ATGAGAGGTATCATATAAGACCATGTTTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGT-CCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* * *
39397775 ATGAGAGGTCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** ** * * *
39397824 ATGAGAACTCCTATGTAAGACCATATCTGGGATATGGCATTGGCA
1 ATGAGAGGTCC-ACATAAGACCATGTCTGGGACATGGCATGGGCA
39397869 GTAAAGGAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 41 0.53
50 37 0.47
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (49 bp):
ATGAGAGGTCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:39397902 original size:49 final size:49
Alignment explanation
Indices: 39397740--39397904 Score: 138
Period size: 49 Copynumber: 3.3 Consensus size: 49
39397730 AGGTATCATA
* * * * * ** *
39397740 TAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCC-CG
1 TAAGACCATGTCTGGGACATGGCATGGGCA-CGAAAGGAGAACTCCCATG
* * *
39397789 TAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCTATG
1 TAAGACCATGTCTGGGACATGGCATGGGCA-CGAAAGGAGAACTCCCATG
* * *
39397839 TAAGACCATATCTGGGATATGGCATTGGCA-GTAAAGGA-AACATCCCATG
1 TAAGACCATGTCTGGGACATGGCATGGGCACG-AAAGGAGAAC-TCCCATG
*
39397888 TAAGACTATGTCTGGGA
1 TAAGACCATGTCTGGGA
39397905 AATAGCTTTG
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
48 4 0.04
49 65 0.67
50 28 0.29
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATGGGCACGAAAGGAGAACTCCCATG
Found at i:39398168 original size:20 final size:20
Alignment explanation
Indices: 39398130--39398168 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
39398120 TAAGCAAGCA
*
39398130 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
39398150 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
39398169 AAAGATTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:39401643 original size:5 final size:5
Alignment explanation
Indices: 39401633--39401676 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
39401623 GCCTAAAATG
* *
39401633 TGAAT TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
39401677 GTTAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 29 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:39402159 original size:25 final size:25
Alignment explanation
Indices: 39402131--39402224 Score: 83
Period size: 25 Copynumber: 3.8 Consensus size: 25
39402121 AGAGTGTCTC
39402131 GATATATGGCTCTTCGGAGCTTCCT
1 GATATATGGCTCTTCGGAGCTTCCT
* *
39402156 G--ATATGGCTTGCTT--GAACTTCCC
1 GATATATGGC-T-CTTCGGAGCTTCCT
*
39402179 GATATATGGCTATTCGGAGCTT-CT
1 GATATATGGCTCTTCGGAGCTTCCT
39402203 CGAT-TAATGGCTCTTCGGAGCT
1 -GATAT-ATGGCTCTTCGGAGCT
39402225 ACCCGTCATT
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
23 17 0.31
24 4 0.07
25 34 0.62
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.35
Consensus pattern (25 bp):
GATATATGGCTCTTCGGAGCTTCCT
Found at i:39418326 original size:27 final size:27
Alignment explanation
Indices: 39418296--39418352 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
39418286 CATCCTAACA
*
39418296 ATTTGGATTATTATTGAGACCAGGACC
1 ATTTGGATTATTATTAAGACCAGGACC
* *
39418323 ATTTGGATTATTGTTAAGACCAGGATC
1 ATTTGGATTATTATTAAGACCAGGACC
39418350 ATT
1 ATT
39418353 CTCATTTCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (27 bp):
ATTTGGATTATTATTAAGACCAGGACC
Found at i:39422939 original size:51 final size:51
Alignment explanation
Indices: 39422839--39422939 Score: 157
Period size: 51 Copynumber: 2.0 Consensus size: 51
39422829 GCTAGCTAGA
*
39422839 ACATAAAACTTTACATAATTAGTACACACATACTTTGCATTCACGGTTCAC
1 ACATAAAACTTTACATAATTAGTACACACATACTTTGCATTCACAGTTCAC
* ** *
39422890 ACATAGAACTTTACATAATTAGTATGCACATACTTTGCATTCATAGTTCA
1 ACATAAAACTTTACATAATTAGTACACACATACTTTGCATTCACAGTTCA
39422940 TGGACCTTTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (51 bp):
ACATAAAACTTTACATAATTAGTACACACATACTTTGCATTCACAGTTCAC
Found at i:39438806 original size:19 final size:19
Alignment explanation
Indices: 39438753--39438808 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
39438743 CATTTCAGAA
39438753 CAGTAATTCATCAA-CATTT
1 CAGTAATT-ATCAATCATTT
* * *
39438772 AACTAA-TAGCATATCATTT
1 CAGTAATTATCA-ATCATTT
39438791 CAGTAATTATCAATCATT
1 CAGTAATTATCAATCATT
39438809 CATATTCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 3 0.11
18 2 0.07
19 19 0.68
20 4 0.14
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (19 bp):
CAGTAATTATCAATCATTT
Found at i:39439702 original size:26 final size:24
Alignment explanation
Indices: 39439671--39439740 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 24
39439661 GAGCCATGAT
39439671 CGGTAAGCTCAT-TCCGAGCTGAAAAA
1 CGGTAAGCTCATAT-CGAGCTG--AAA
*
39439697 TGGTAAGCTC-TATCGAGCTGAAA
1 CGGTAAGCTCATATCGAGCTGAAA
*
39439720 CGGTAAGCTCATA-AGAGCTGA
1 CGGTAAGCTCATATCGAGCTGA
39439741 TATATTAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 19 0.49
24 2 0.05
25 8 0.21
26 10 0.26
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (24 bp):
CGGTAAGCTCATATCGAGCTGAAA
Found at i:39439737 original size:23 final size:23
Alignment explanation
Indices: 39439671--39439765 Score: 75
Period size: 26 Copynumber: 3.9 Consensus size: 23
39439661 GAGCCATGAT
*
39439671 CGGTAAGCTCATTCCGAGCTGAAAAA
1 CGGTAAGCTCA-TACGAGCTG--AAA
*
39439697 TGGTAAGCTC-TATCGAGCTGAAA
1 CGGTAAGCTCATA-CGAGCTGAAA
*
39439720 CGGTAAGCTCATAAGAGCTGATATA
1 CGGTAAGCTCATACGAGCTGA-A-A
**
39439745 TTAGTAAGCTCATACGAGCTG
1 -CGGTAAGCTCATACGAGCTG
39439766 TGGTGAGTCC
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
23 19 0.33
24 4 0.07
25 8 0.14
26 26 0.46
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (23 bp):
CGGTAAGCTCATACGAGCTGAAA
Found at i:39443640 original size:16 final size:18
Alignment explanation
Indices: 39443619--39443652 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
39443609 TTTATAAAGT
39443619 TAATTAA-G-TAAAATAA
1 TAATTAATGATAAAATAA
39443635 TAATTAATGATAAAATAA
1 TAATTAATGATAAAATAA
39443653 ATAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
TAATTAATGATAAAATAA
Found at i:39446070 original size:26 final size:26
Alignment explanation
Indices: 39446031--39446099 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
39446021 CTTTACATTG
* *
39446031 TTGCTCACACGAGCTGTGAAAGGGGC
1 TTGCTCACACGAGCTATAAAAGGGGC
* *
39446057 TTGCTCACATGAGCTATAAAATGGGC
1 TTGCTCACACGAGCTATAAAAGGGGC
*
39446083 CTGCTCA-ACCGAGCTAT
1 TTGCTCACA-CGAGCTAT
39446100 GTGTCGAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 1 0.03
26 35 0.97
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
TTGCTCACACGAGCTATAAAAGGGGC
Found at i:39450044 original size:15 final size:15
Alignment explanation
Indices: 39450024--39450056 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
39450014 GTGCACTTAA
39450024 AATATGAACATGCTG
1 AATATGAACATGCTG
*
39450039 AATATGAACATGTTG
1 AATATGAACATGCTG
39450054 AAT
1 AAT
39450057 TTTAGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (15 bp):
AATATGAACATGCTG
Found at i:39450252 original size:22 final size:22
Alignment explanation
Indices: 39450226--39450270 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
39450216 ATTATATGTA
39450226 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
39450248 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
39450270 T
1 T
39450271 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:39456712 original size:27 final size:26
Alignment explanation
Indices: 39456674--39456984 Score: 290
Period size: 27 Copynumber: 11.7 Consensus size: 26
39456664 ATTCGTAGGC
*
39456674 AAATGACTGAAATATCCCTGAGGGGTA
1 AAATGACTGAAATA-CCCTGAAGGGTA
*
39456701 AAATGACTGAAATACCTCTGAATGGTA
1 AAATGACTGAAATACC-CTGAAGGGTA
* * *
39456728 AAATGACCGAAATACCCCCGAGGGGTA
1 AAATGACTGAAATA-CCCTGAAGGGTA
* *
39456755 AAATGACTGAAATACCTTTGAATGGTA
1 AAATGACTGAAATACC-CTGAAGGGTA
* * *
39456782 AAATCACCGAAATACCCCG-AGGGTTA
1 AAATGACTGAAATACCCTGAAGGG-TA
* *
39456808 AAATGACAGAAAGACCCCT-AAGGGGTA
1 AAATGACTGAAATA-CCCTGAA-GGGTA
* *
39456835 AAATGA-TCGTAATGCCCTGATAGGG-A
1 AAATGACT-GAAATACCCTGA-AGGGTA
*
39456861 AAATGACTGAAATATGCCC-GAGGGGTA
1 AAATGACTGAAATA--CCCTGAAGGGTA
39456888 AAATGACTGAAATACCCTCGAAGGGTA
1 AAATGACTGAAATACCCT-GAAGGGTA
* *
39456915 AAATGACTGAAATACACTGATGGGTA
1 AAATGACTGAAATACCCTGAAGGGTA
* *
39456941 AAATAACTGAAATACCCTCCAAGGGTA
1 AAATGACTGAAATACCCT-GAAGGGTA
*
39456968 AAATGTCTGAAATACCC
1 AAATGACTGAAATACCC
39456985 CCATTGGGTA
Statistics
Matches: 231, Mismatches: 36, Indels: 34
0.77 0.12 0.11
Matches are distributed among these distances:
25 6 0.03
26 59 0.26
27 157 0.68
28 9 0.04
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (26 bp):
AAATGACTGAAATACCCTGAAGGGTA
Found at i:39456835 original size:53 final size:54
Alignment explanation
Indices: 39456682--39456983 Score: 253
Period size: 53 Copynumber: 5.6 Consensus size: 54
39456672 GCAAATGACT
* * *
39456682 GAAATATCCCTGAGGGGTAAAATGACTGAAATACCTCTGAATGGTAAAATGACC
1 GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTCTGAATGGTAAAATCACC
*
39456736 GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTTTGAATGGTAAAATCACC
1 GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTCTGAATGGTAAAATCACC
* * * * * * *
39456790 GAAATA-CCCCGAGGGTTAAAATGACAGAAAGACCCCT-AAGGGGTAAAATGATC
1 GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTCTGAA-TGGTAAAATCACC
* * * * ** * *
39456843 GTAAT-GCCCTGATAGGG-AAAATGACTGAAATATGCC-C-GAGGGGTAAAATGACT
1 GAAATACCCCCGA-GGGGTAAAATGACTGAAATA--CCTCTGAATGGTAAAATCACC
* * * * *
39456896 GAAATACCCTCGAAGGGTAAAATGACTGAAATA-CACTG-ATGGGTAAAATAACT
1 GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTCTGAAT-GGTAAAATCACC
* *
39456949 GAAATACCCTCC-AAGGGTAAAATGTCTGAAATACC
1 GAAATACCC-CCGAGGGGTAAAATGACTGAAATACC
39456984 CCCATTGGGT
Statistics
Matches: 205, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
51 1 0.00
52 3 0.01
53 118 0.58
54 81 0.40
55 2 0.01
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
GAAATACCCCCGAGGGGTAAAATGACTGAAATACCTCTGAATGGTAAAATCACC
Found at i:39456967 original size:80 final size:77
Alignment explanation
Indices: 39456674--39456985 Score: 297
Period size: 80 Copynumber: 3.9 Consensus size: 77
39456664 ATTCGTAGGC
* * * *
39456674 AAATGACTGAAATATCCCTGAGGGGTAAAATGACTGAAATACCTCTGAATGGTAAAATGACCGAA
1 AAATGACTGAAATA-CCCTGATGGGTAAAATGACTGAAATACC-C-CAAGGGTAAAATGACTGAA
*
39456739 ATACCCCCGAGGGGTA
63 ATA-CCCCGAAGGGTA
* * * * *
39456755 AAATGACTGAAATACCTTTGAAT-GGTAAAATCACCGAAATACCCCGAGGGTTAAAATGACAGAA
1 AAATGACTGAAATACC-CTG-ATGGGTAAAATGACTGAAATACCCCAAGGG-TAAAATGACTGAA
* *
39456819 AGACCCCTAAGGGGTA
63 ATACCCCGAA-GGGTA
* * * *
39456835 AAATGA-TCGTAATGCCCTGATAGGG-AAAATGACTGAAATATGCCCGAGGGGTAAAATGACTGA
1 AAATGACT-GAAATACCCTGAT-GGGTAAAATGACTGAAATA--CCCCAAGGGTAAAATGACTGA
39456898 AATACCCTCGAAGGGTA
62 AATACCC-CGAAGGGTA
* * *
39456915 AAATGACTGAAATACACTGATGGGTAAAATAACTGAAATACCCTCCAAGGGTAAAATGTCTGAAA
1 AAATGACTGAAATACCCTGATGGGTAAAATGACTGAAATA-CC-CCAAGGGTAAAATGACTGAAA
39456980 TACCCC
64 TACCCC
39456986 CATTGGGTAA
Statistics
Matches: 188, Mismatches: 30, Indels: 28
0.76 0.12 0.11
Matches are distributed among these distances:
78 2 0.01
79 30 0.16
80 111 0.59
81 44 0.23
82 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (77 bp):
AAATGACTGAAATACCCTGATGGGTAAAATGACTGAAATACCCCAAGGGTAAAATGACTGAAATA
CCCCGAAGGGTA
Found at i:39463742 original size:27 final size:27
Alignment explanation
Indices: 39463661--39463835 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
39463651 ATTCGTGGGC
*
39463661 AAATGACCGAAATA-CCTTGAGGGGTA
1 AAATGACTGAAATACCCTTGAGGGGTA
*
39463687 AAATGACCGAAATACCC--GAGGGGTA
1 AAATGACTGAAATACCCTTGAGGGGTA
*
39463712 AAATGAATGAAATACCCTTGAGGGGTA
1 AAATGACTGAAATACCCTTGAGGGGTA
* ** *
39463739 AAATGATTGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACCCTTGAGGGGTA
* * *
39463766 AAGTGACTGAAATACAC-TGATGGGTA
1 AAATGACTGAAATACCCTTGAGGGGTA
* ** *
39463792 AAAT-ATTTGAAATACCCTCAAAGGGTA
1 AAATGA-CTGAAATACCCTTGAGGGGTA
*
39463819 AAATGACCGAAATACCC
1 AAATGACTGAAATACCC
39463836 CCTATCAGGT
Statistics
Matches: 124, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
25 24 0.19
26 33 0.27
27 66 0.53
28 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (27 bp):
AAATGACTGAAATACCCTTGAGGGGTA
Found at i:39463803 original size:80 final size:79
Alignment explanation
Indices: 39463661--39463837 Score: 205
Period size: 80 Copynumber: 2.2 Consensus size: 79
39463651 ATTCGTGGGC
** *
39463661 AAATGACCGAAATA-CCTTGAGGGGTAAAATGACCGAAATACCCGAGGGGTAAAATGAATGAAAT
1 AAATGACCGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCGAGGGGTAAAATGAATGAAAT
** *
39463725 ACCCTTGAGGGGTA
66 ACCCTCAAAGGGTA
** * * * * *
39463739 AAATGATTGAAATACCCCCGAAGGGTAAAGTGACTGAAATACACTGATGGGTAAAAT-ATTTGAA
1 AAATGACCGAAATACCCCCGAAGGGTAAAATGACCGAAATAC-CCGAGGGGTAAAATGA-ATGAA
39463803 ATACCCTCAAAGGGTA
64 ATACCCTCAAAGGGTA
39463819 AAATGACCGAAATACCCCC
1 AAATGACCGAAATACCCCC
39463838 TATCAGGTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 12 0.15
79 23 0.28
80 46 0.57
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.19
Consensus pattern (79 bp):
AAATGACCGAAATACCCCCGAAGGGTAAAATGACCGAAATACCCGAGGGGTAAAATGAATGAAAT
ACCCTCAAAGGGTA
Found at i:39463808 original size:53 final size:54
Alignment explanation
Indices: 39463661--39463833 Score: 203
Period size: 53 Copynumber: 3.3 Consensus size: 54
39463651 ATTCGTGGGC
* ** *
39463661 AAATGACCGAAATAC-CTTGAGGGGTAAAATGACCGAAATA--CCCGAGGGGTA
1 AAATGACTGAAATACACTTGAGGGGTAAAATGATTGAAATACCCCCGAAGGGTA
* *
39463712 AAATGAATGAAATACCCTTGAGGGGTAAAATGATTGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACACTTGAGGGGTAAAATGATTGAAATACCCCCGAAGGGTA
* * * *
39463766 AAGTGACTGAAATACAC-TGATGGGTAAAAT-ATTTGAAATACCCTCAAAGGGTA
1 AAATGACTGAAATACACTTGAGGGGTAAAATGA-TTGAAATACCCCCGAAGGGTA
*
39463819 AAATGACCGAAATAC
1 AAATGACTGAAATAC
39463834 CCCCTATCAG
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
51 13 0.12
52 24 0.23
53 44 0.42
54 24 0.23
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.20
Consensus pattern (54 bp):
AAATGACTGAAATACACTTGAGGGGTAAAATGATTGAAATACCCCCGAAGGGTA
Found at i:39464244 original size:28 final size:28
Alignment explanation
Indices: 39464204--39464287 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
39464194 CACTGTACTG
*
39464204 ATTATTGTATTGGGCTAAGGCCCACACT
1 ATTACTGTATTGGGCTAAGGCCCACACT
* *
39464232 ATTACTGTGTTGGGCTAAGGCCCACAAT
1 ATTACTGTATTGGGCTAAGGCCCACACT
** * * *
39464260 GCTACTGTTTTGGGCTAATGCCCTCACT
1 ATTACTGTATTGGGCTAAGGCCCACACT
39464288 GTATTATTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
ATTACTGTATTGGGCTAAGGCCCACACT
Found at i:39466742 original size:73 final size:71
Alignment explanation
Indices: 39466633--39466788 Score: 222
Period size: 73 Copynumber: 2.2 Consensus size: 71
39466623 GATGATTTCC
* * * **
39466633 AGAAAGCGCCGCAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCTTTTGGGGATTTAGCGGTG
1 AGAAAGCGCCGCAAAAACATAAGCCCAACGACGCCGTTTTATGAGCTTTCGGGGATTTAGCAGAA
39466698 TTTTTG
66 TTTTTG
* *
39466704 AGAAAGCGCCGCAAAAAAACATAAGCCTAACGACGCCGTTTTTTGAGCTTTCGGGGATTTAGCAG
1 AGAAAGCGCCGC--AAAAACATAAGCCCAACGACGCCGTTTTATGAGCTTTCGGGGATTTAGCAG
39466769 AATTTTTG
64 AATTTTTG
*
39466777 AAAAAGCGCCGC
1 AGAAAGCGCCGC
39466789 TAATGCTGGG
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
71 12 0.16
73 63 0.84
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (71 bp):
AGAAAGCGCCGCAAAAACATAAGCCCAACGACGCCGTTTTATGAGCTTTCGGGGATTTAGCAGAA
TTTTTG
Done.