Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 137 of 213
Found at i:40681406 original size:18 final size:18
Alignment explanation
Indices: 40681320--40681408 Score: 56
Period size: 18 Copynumber: 4.8 Consensus size: 18
40681310 TTCTTTTGTT
** *
40681320 TCTTTTTCTAATTCATTT
1 TCTTTTTCTTTTTCATTC
40681338 TC-TTTTCTTTCTTCAATT-
1 TCTTTTTCTTT-TTC-ATTC
** * *
40681356 TCTTTTTCACTCTCAATC
1 TCTTTTTCTTTTTCATTC
40681374 TCTTTTTGCTCTTTTTCATTC
1 TC-TTTT--TCTTTTTCATTC
40681395 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTC
40681409 CTCACTTGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
17 8 0.15
18 19 0.35
19 13 0.24
20 4 0.07
21 10 0.19
ACGTcount: A:0.10, C:0.24, G:0.01, T:0.65
Consensus pattern (18 bp):
TCTTTTTCTTTTTCATTC
Found at i:40691361 original size:13 final size:13
Alignment explanation
Indices: 40691343--40691368 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40691333 ACCTGAAAGC
40691343 AATTTAATTCATA
1 AATTTAATTCATA
40691356 AATTTAATTCATA
1 AATTTAATTCATA
40691369 TTAGGACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTTAATTCATA
Found at i:40691783 original size:20 final size:21
Alignment explanation
Indices: 40691758--40691796 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
40691748 TCAAACAAGC
40691758 AAATGAGCTCAA-TGAGCTGG
1 AAATGAGCTCAATTGAGCTGG
*
40691778 AAATGAGCTGAATTGAGCT
1 AAATGAGCTCAATTGAGCT
40691797 CAACGAGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (21 bp):
AAATGAGCTCAATTGAGCTGG
Found at i:40695813 original size:12 final size:12
Alignment explanation
Indices: 40695796--40695839 Score: 70
Period size: 12 Copynumber: 3.6 Consensus size: 12
40695786 TTGTAGATTC
*
40695796 AAAAAAATCGAA
1 AAAAAAATTGAA
40695808 AAAAAAATTGAA
1 AAAAAAATTGAA
40695820 AAAAAAATTTGAA
1 AAAAAAA-TTGAA
40695833 AAAAAAA
1 AAAAAAA
40695840 ATTGCATACG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 18 0.60
13 12 0.40
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAATTGAA
Found at i:40695814 original size:13 final size:13
Alignment explanation
Indices: 40695796--40695843 Score: 71
Period size: 13 Copynumber: 3.8 Consensus size: 13
40695786 TTGTAGATTC
*
40695796 AAAAAAATCG-AA
1 AAAAAAATTGAAA
40695808 AAAAAAATTGAAA
1 AAAAAAATTGAAA
*
40695821 AAAAAATTTGAAA
1 AAAAAAATTGAAA
40695834 AAAAAAATTG
1 AAAAAAATTG
40695844 CATACGGTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
12 9 0.28
13 23 0.72
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (13 bp):
AAAAAAATTGAAA
Found at i:40699225 original size:40 final size:40
Alignment explanation
Indices: 40699181--40699352 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
40699171 GGACTAAGAT
*
40699181 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
40699221 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
40699261 CCGAAGGCATTCGTGCGAGTTATTAAATTCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
40699301 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
40699340 CCGAAGGCATTTG
1 CCGAAGGCATTTG
40699353 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.28
40 80 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:40699265 original size:80 final size:79
Alignment explanation
Indices: 40699181--40699352 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
40699171 GGACTAAGAT
*
40699181 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAATT-CGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
40699245 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
40699261 CCGAAGGCATTCGTGCGAGTTATTAAATTCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATTCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
40699326 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
40699340 CCGAAGGCATTTG
1 CCGAAGGCATTTG
40699353 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 36 0.46
81 5 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATTCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:40707203 original size:80 final size:79
Alignment explanation
Indices: 40707119--40707290 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
40707109 GGACTAAGAT
*
40707119 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
40707183 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
40707199 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
40707264 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
40707278 CCGAAGGCATTTG
1 CCGAAGGCATTTG
40707291 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:40707270 original size:39 final size:39
Alignment explanation
Indices: 40707066--40707288 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
40707056 TTGAATGCTG
* * * * *
40707066 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
40707106 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
40707145 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
40707186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
40707226 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
40707265 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
40707289 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:40707308 original size:79 final size:80
Alignment explanation
Indices: 40707146--40707323 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
40707136 AGATACAAAT
* * * *
40707146 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
40707211 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
40707226 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
40707290 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
40707305 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
40707324 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:40712522 original size:15 final size:15
Alignment explanation
Indices: 40712502--40712531 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
40712492 AACGTCGCTA
*
40712502 CCTTTCTTGATAATG
1 CCTTTCGTGATAATG
40712517 CCTTTCGTGATAATG
1 CCTTTCGTGATAATG
40712532 AGAGGCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (15 bp):
CCTTTCGTGATAATG
Found at i:40715902 original size:15 final size:16
Alignment explanation
Indices: 40715872--40715904 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
40715862 AAGCTGTGTA
*
40715872 AACACAAACGCAACAC
1 AACACAAACACAACAC
40715888 AACAC-AACACAACAC
1 AACACAAACACAACAC
40715903 AA
1 AA
40715905 ATGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00
Consensus pattern (16 bp):
AACACAAACACAACAC
Found at i:40718021 original size:12 final size:12
Alignment explanation
Indices: 40717992--40718026 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
40717982 GAATTAGTCC
*
40717992 TATTATTATTAT
1 TATTACTATTAT
40718004 TATTACTATTAT
1 TATTACTATTAT
40718016 TATTACCTATT
1 TATTA-CTATT
40718027 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:40743588 original size:23 final size:22
Alignment explanation
Indices: 40743545--40743588 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
40743535 TTCTAAGTCG
40743545 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
40743568 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
40743589 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:40743712 original size:45 final size:45
Alignment explanation
Indices: 40743635--40743720 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
40743625 AGATACTCGG
*
40743635 TGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
1 TGGAATCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
*
40743680 TGGAATCAGCACATAGCAACCACCTT-TCTAATCAATGATGT
1 TGGAATCAACACATAGCAACCACCTTAT-TAATCAATGATGT
40743721 TCGGTTCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 1 0.03
45 37 0.97
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (45 bp):
TGGAATCAACACATAGCAACCACCTTATTAATCAATGATGTCTAT
Found at i:40743789 original size:51 final size:51
Alignment explanation
Indices: 40743722--40743917 Score: 227
Period size: 51 Copynumber: 3.9 Consensus size: 51
40743712 CAATGATGTT
* *
40743722 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
* * * * *
40743773 CGATATACGTAGTAGCCTGCACATAGTACTACACATGTGATCGA-AACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATTACCATC
* * * * *
40743824 CGGTACGCATAGTAGCCTGCGCATAGTACTACACATGCGA-C-TTATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TC
* *
40743874 CGGTACACGTAATAGCCTGCACATAGTACTACACAAGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
40743918 CACTTTCACT
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.02
50 36 0.31
51 76 0.65
52 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
Found at i:40743937 original size:101 final size:100
Alignment explanation
Indices: 40743728--40743913 Score: 259
Period size: 101 Copynumber: 1.9 Consensus size: 100
40743718 TGTTCGGTTC
* * *
40743728 ACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATATACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAATAGCCTGC
* *
40743793 ACATAGTACTACACATGTGATCGAAACTATCCGGT
66 ACATAGTACTACACAAGTGATCCAAACTATCCGGT
* * *
40743828 ACGCATAGTAGCCTGCGCATAGTACTACACATGCGA-C-TTATCATTCCGGTACACGTAATAGCC
1 A--CATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCA-TCCGATACACGTAATAGCC
40743891 TGCACATAGTACTACACAAGTGA
63 TGCACATAGTACTACACAAGTGA
40743914 CCATCACTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 6 0.08
101 39 0.51
102 31 0.41
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (100 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACCATTACCATCCGATACACGTAATAGCCTGC
ACATAGTACTACACAAGTGATCCAAACTATCCGGT
Found at i:40748309 original size:22 final size:20
Alignment explanation
Indices: 40748267--40748304 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
40748257 GTCTATATTA
40748267 AGATTATATTAAATATATAT
1 AGATTATATTAAATATATAT
*
40748287 AGATTATATTAAAAATAT
1 AGATTATATTAAATATAT
40748305 GTATAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
AGATTATATTAAATATATAT
Found at i:40753452 original size:11 final size:11
Alignment explanation
Indices: 40753436--40753482 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
40753426 TTTCTATGCT
40753436 ATTAGTATTAG
1 ATTAGTATTAG
40753447 ATTAGTATTA-
1 ATTAGTATTAG
*
40753457 CTTAG-ATTAG
1 ATTAGTATTAG
40753467 ATTAGTATTAG
1 ATTAGTATTAG
40753478 -TTAGT
1 ATTAGT
40753483 GATCCCGACT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 4 0.12
10 13 0.41
11 15 0.47
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (11 bp):
ATTAGTATTAG
Found at i:40753467 original size:20 final size:21
Alignment explanation
Indices: 40753437--40753482 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
40753427 TTCTATGCTA
40753437 TTAGTATTAGATTAGTATTAC
1 TTAGTATTAGATTAGTATTAC
*
40753458 TTAG-ATTAGATTAGTATTAG
1 TTAGTATTAGATTAGTATTAC
40753478 TTAGT
1 TTAGT
40753483 GATCCCGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (21 bp):
TTAGTATTAGATTAGTATTAC
Found at i:40758918 original size:75 final size:75
Alignment explanation
Indices: 40758793--40759080 Score: 407
Period size: 75 Copynumber: 3.8 Consensus size: 75
40758783 TGATTCTCCC
* * * *
40758793 AAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGTTAAGTGCTGATTCCATCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
40758858 TTAAATGTGA
66 TTAAATGTGA
* * * * *
40758868 AGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTTCTAAGTGCTAATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
40758933 TTAAATGTGA
66 TTAAATGTGA
* * * *
40758943 AAGGGGCTGCTAAGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGGGCTGATTCCACCGTATT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTA-T
*
40759008 TTTGAATGTGAA
65 TTTAAATGTG-A
*
40759020 AAGGGGTTGCTAAGTGCTAATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGAATT-CACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTG-ATTCCACCG
40759081 ATAACGGATA
Statistics
Matches: 186, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
75 121 0.65
76 9 0.05
77 53 0.28
78 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
TTAAATGTGA
Found at i:40763802 original size:32 final size:32
Alignment explanation
Indices: 40763755--40763816 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
40763745 CATCTATTTT
40763755 CATTGGTCAAATCTTTGACAACACGAAAAATC
1 CATTGGTCAAATCTTTGACAACACGAAAAATC
* * *
40763787 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGGTCAAATCTTTGACAACACGAAAAA
40763817 ACCAAGAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.27
Consensus pattern (32 bp):
CATTGGTCAAATCTTTGACAACACGAAAAATC
Found at i:40768615 original size:617 final size:618
Alignment explanation
Indices: 40766420--40788439 Score: 15835
Period size: 617 Copynumber: 35.2 Consensus size: 618
40766410 GTTTATGAAA
*
40766420 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * *
40766485 AATGGCTAAGTGGTTTGGGTGTGTATGGGAGTGTTTTAGAAGTCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40766550 GCAAAATTTTAAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * ** *
40766615 TACTTCTTTTATGACACAAAGAGCCTACTAGTCCAACGTTAGGTTCATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * *
40766680 TGCAACGTGTGGGACTGATCGTTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * * *
40766745 GTGTTTCACGTCTCCATGCTAAGGCATTATCACTCTGACCCCACTCACATGGTACCAGTTAAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * * *
40766810 GATTGAGGTTAGG-CATAATCTGACCTTCGAGGAGAAGCTAGTGCGGGTTTTGGACCGTAAGGTG
391 GATTGAGGTTAGGCCA-GATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* ** *
40766874 AAGTTACTGAGGAAGAAATCTATTCCATTACTCAAAGTATTTTGGCGTAATCACAGTTTAGAAGA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * *
40766939 AGCCACGTGGGAACCCAAAGAGGCGATGCGCCAGCAATACCCTCATCCTTTCTGACCAGGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
*
40767004 TTCAAGGCTGAAATTTTGTT-AAAGGGGTAGAGT
585 TTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * * *
40767037 TGTAATGCTCCAAAATTTAAGTCTCTAAGTTTTGCTTGTTTTGACACAAAATT-CTTGTTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGTTT
* * * *
40767101 TAATGGCTAAGTGATTTGGGTGTATATAGGAGTGTTTGAGAAGCCTAGGTTCAAGTCCTGGACC-
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGG-CCT
*
40767165 TGGCACAATTTTTAGTTTTTCTCTCAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
129 TGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * * *
40767230 AATAATTGTTTTATGACACAAAGAGCCTATTGGTCTAGTGGTAGGTTCATTGGGCCTTACCATGC
194 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* * * * * *
40767295 ACTGCAACGTATGGGACTGATCGCTTATAAATTAGGGTTTCCTCTGAAATTAGAGCAGATTCATG
259 ACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * *
40767360 -TCGTGTTTCACGTCTCAATGCTCAGGCATTATCGCTCTGATCCCACTCACATAGTACTAGTTTA
324 AT-GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* ** *
40767424 GGAGATTGAGGTTACGTTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCTTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * *
40767489 TGAAGTTGCTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * *
40767554 GAAGCCACGTGGGAACCCGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTTGACCAGGTA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCA-TCTTTTCTGACCAGGTA
* * * *
40767619 AATTTTGAGGTTGAAATTTTGTTAAATGGGGGTAGATT
582 AATTTCGAGGCTGAAATTTTGTTAAA-AGGGGTAGAGT
* *
40767657 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40767722 AATGACTAAGTGATTTGGGTGTGTATGAGAGTGTTTTAGAAGCCTGGGTTCAAGTTTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40767787 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTAGCACTTACGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * *
40767852 TACTTGTTTTATGACACAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTTGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40767917 TGAAACATGTGAGACCGATCACTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * * *
40767982 ATGTTTCACGTCTCCATGCTAAGCCATTA-CTACTCTGACCCCACTCACATAGTACCAGTTGAGG
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATC-GCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * ** *
40768046 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAAAAACCAGTGCAGATTTTGGATTGTGAGGTA
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* * *
40768111 AAGTTACTGAGAAAGAAATCTTTTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTCAGAAGA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* *
40768176 AGCCACGTGAGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGAAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * * * *
40768241 TTCAAGGGTAAAATTTTGTTCAATGGGGTAGAGT
585 TTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * * * * *
40768275 TGTAACACCCTAAAACTTAAGTTTCTAATATTTGCATATTTTGAAACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
*
40768340 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40768405 GCACAA-GTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCAGTTAGGCCTTTTATATATGAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40768469 TACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTCGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * *
40768534 TGAAACATGTGGGATCGATCGCTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40768599 GTGTTACACGTCTCCATGCTAAGGCATTATCGCTCTGCTCCCACTCACATAGTACTAGTTGAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * *
40768664 GATTGAGGTTACGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* * *
40768729 TGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAATTCAGAAGAA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * * *
40768794 GCCACGTGGGAACCTGAAGTGGCGATGCGACAGCAATACCCTTATTTTTTTTGACCAGGTAAATT
521 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* * *
40768859 TCGAGGTTGAAATTTTGTTAAATGGGGGTAGATT
586 TCGAGGCTGAAATTTTGTTAAA-AGGGGTAGAGT
* * * *
40768893 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTTCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40768958 AATGACTAATTGATTTGGGTGTGTATGAGAGTGTTTTGA-AAGCCTGGGTTCAAGTTTTGGCCTT
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTG-TTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
**
40769022 GGCACAATTTTTAGTTTTTCTCTTAAAAT-AATCTGGACACTGGCACTTACTCCTTTTATATATT
130 GGCACAATTTTTAGTTTTTCTCTT-AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * * * *
40769086 AATACTTGTTTTATGACATAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTTGGCCTTATCGTGT
194 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* * * *
40769151 ACTGCAACATGTGAGACCGATCACTTATAAACTAGAGTTTCCTCTAAAATTAGGCCAGATTCATG
259 ACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * * * *
40769216 ATATGTTTCACGTCTCCATGCTAAGCCATTACCACTCTGACCCCACTCACATACTACCAGTTGAG
324 ATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * ** *
40769281 GAGATTGAGGTTAGGCCAGATTTGACAC-TCGAGGAAAAACCAGTGCAGATTTTGGATTGTGAGC
389 GAGATTGAGGTTAGGCCAGATCTGAC-CTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* *
40769345 TGAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * *
40769410 GAAGCCACGTGAGAACCTGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGAAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* * *
40769475 ATTTCAAGGCT-AGAATTTTGTTCAATGGGGTAGAGT
583 ATTTCGAGGCTGA-AATTTTGTTAAAAGGGGTAGAGT
* * * *
40769511 TGTAACACCCCAAAACTTAAGTTTCTAATTTTTGCATGTTTTGACATAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
*
40769576 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40769641 GCACAA-GTTTAGTTTTTCTCTTAAAGGAATCTGGACACTGGCAGTTAGGCCTTTTATACATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
*
40769705 TACTTGTTTTATGACCCAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * *
40769770 TGAAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTTCTCTAAAATCAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * *
40769835 GTGTTACACGTCTCCGTGCTAAGGCGTTATCGCTCTGCTCCCACTCACATAGTACCAGTTGAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * *
40769900 GATTGGGGTTAGTCCAGATCTGACCTTCGAGGAGAAGCCAATGCAGATTTTGGACCGTGAGGTTA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* * *
40769965 AGCTACTAAGGAA-AAATCTATTCCATTAGTTAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
** * ** * * *
40770029 GAAACGTGGGAACCCGAATAGGCGATGCGACAATAATACCGTCTTCTTTTCTGACCAGGTAGATT
521 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
*
40770094 TCGAGGCTAAAATTTTGTT-AAAGTGGGTAGAGT
586 TCGAGGCTGAAATTTTGTTAAAAG-GGGTAGAGT
** * * *
40770127 TGTAACGCCCCAAAACATAGGTTTCTAAATTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * *
40770192 AATGGCTAAGAGATTTGGGTGTGTATGGGA-TAGTTTGAAAAGCCTGGGTTCAAGTATTGGCCTT
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGT-GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * * * *
40770256 GGCACAATTTTTAATATTTCTGTTAAATGAATCTGAATACTGGCACTTAGGCCTTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* * * * * * *
40770321 ATACTTGTTTTATGACACAAAGAGGCTATTAGTTCAGAGGTAGGTTCATTGGTCCCTATCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * *
40770386 CTGCAACGTGTGGGACCAATCGATTATAAAC-ATGAGTTGCCTCTAAAATTAGACCAGATTCATG
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTA-GAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * * *
40770450 ATATGTTTCACGTCTCCAATG-TAAGGTGCTATTGTTCTGATCCCACTCACACAGTACCAGTTGA
324 ATGTGTTTCACGTCTCC-ATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * * * *
40770514 AGAGATTGAGGTTAGACTAGATCTGACCTTCGATGAGAAGCCAGTGCAAATTTTGGGCCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * * * *
40770579 TGAAGTTACTGAGAAAGAAATATTTTCCATTAGTCAAAGTGCTTTGGTGTAATCACAGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * * *
40770644 GAAGCCACGTGGCAACCCGAAGAGGCAATGCGATAGCAATACCCTTATCTTCTCTAACCAGGTAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* *
40770709 ATTTTGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
583 ATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * *
40770745 TGTAACACCCCAAAATTTAAGTTTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
*
40770810 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTTGGTTCAAG---T---CTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* **
40770869 GC-C------T-GTTTTTCCCTTAAATGAATCTTCACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * *
40770926 TACTTGTTTTATGACACAAAGAGGCTATTGGTCCAATGGTAGGTTGATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40770991 TGCAACGTGTGGGACTGATCGCTTATAAACTAGGGTTTCCTTTGAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* *
40771056 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCCGATTCCACTCACATAGTACCAGTTGAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * *
40771121 GATTGAGGTTAGGCTAGATCTGACCTTCAAGGAGAAGCTAGTGCGGATTTTGGACCGTGAGGTGA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* *
40771186 TGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTCTT-GCGTAATCGCAGTTCAGAAGA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCT-TTGGCGTAATCACAGTTCAGAAGA
* * * *
40771250 GGCGACGTGGGAACCCGAGGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCAGGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * *
40771315 TTGGAGGTTGAAATTTTGTT-GAAGTGGGTAGAGT
585 TTCGAGGCTGAAATTTTGTTAAAAG-GGGTAGAGT
* * * ** * **
40771349 TGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATCTTTTTACACGGATTACTTGTTTACTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
40771414 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAG---T---CTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40771473 GC-C------T-GTTTTTCTCTTCAATGAATCTTGACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40771530 TACTTGCTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
*
40771595 TGCAACGTGTGGGACCGATCGCTTATAAACTAGACTTTCCTCTAAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40771660 GTGTTTCACATCTCCATGCTAAGGCGTTAACGCTCTGACCCCAGTCACATAGTACCAGTTGAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * *
40771725 GATTGAGGTTAGGACAGATCTAACCTTTGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* *
40771790 AGTTAGTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCTTAATCACAGTTCAGAAGAA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * *
40771855 GCCACGTGGGAACCCAAAGAGGCGATGCGACAGCAATTCCCTCATCTTTTCTAACCAAGTAAATT
521 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
*
40771920 TCGAGGCTGATATTTTGTT-AAAGGAGGTAGAGT
586 TCGAGGCTGAAATTTTGTTAAAAGG-GGTAGAGT
* * * *
40771953 TGTAATGCCCCAAAATTTAAGTCTCTAAGTTTTGC-TGTTTTGACACAAAATGTTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * *
40772017 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGCCCCTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40772082 GGACAATTTTTCA-TTTTTCTCTTAAATGAATCTGGACACTGGAACTTAGGCCTTTTATATATTA
131 GCACAATTTTT-AGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40772146 ATACTTGTTTTATGACACAAAGAGCCTATTGGTACAGTGGTAGGTTCATTGGGCCTTACCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
** * * *
40772211 CTGCAACGTGTGGGACTTATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGATCAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
40772276 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * *
40772341 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCCTAAGGTG
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* * ** *
40772406 AAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTTGCGTAATTGCAGTTTAGAAGA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * * * *
40772471 GGCGACGTGGGAACCCGAGGAGGCGATGCGACAACAAGACCCTTATCTTTTCTGACCAGGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * * *
40772536 TTGGATGCTGAAATTTTGTT-GAAGTGGGTAGAAT
585 TTCGAGGCTGAAATTTTGTTAAAAG-GGGTAGAGT
* * * * *
40772570 TATAACGCCCCAAAAGTTT-AGTCTCTAATTTTTGCATCTTTTGACACGAATTACTTGTTTGCTT
1 TGTAACGCCCCAAAA-TTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTT
* *
40772634 TAATTGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTT-G-C--
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
*
40772695 --C-C------T-GTTTTTCTCTTAAATGAATCTTGACACTGGCACTTAGGCCTTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40772750 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* *
40772815 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGACTTTCCTCTGAAATTAGACCAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* *
40772880 TGTGTTTCAAGTCTCCATGCTAAGGCGTTATCGCTCTGACCCCACTCACATAGTACCAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * * * *
40772945 AGATTGAGGTTAGGACAGATCTGACCTTCGAGGAGATGCCAGTGCGGATTTTGGACCGTGCGATG
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* *
40773010 AAGTTAGTGAGGAAGAAATCTATTCCATTCGTCAAAGTGCTTTGGCGTAATCACCA-TTCAGAAG
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAG
* * * *** * *
40773074 AAGCCACATGGGAACCCAAAGAGGCGATGCGACAGCAATGTTGGATCGCCGGCA-CCCCTATGGC
519 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAA---T--A-C-CC-TCATCTTTTCTGAC
* * * * * * * * ** * * *
40773138 GCAGCGAAAAATAAAAATCCGACGATCCTAACCAGGGATCCATGTGTGAGGAACGAATCGGGG
576 -CAG-G-----T-AAATTTCGA-G--GCTGA--A---AT---TTTGTTA-AAAGGGGTAGAGT
* * *** * * ** *
40773201 TGAAAGAGGTTGCGAAA-TT-A--C-CTAATGTTTATTCA-GAGTAGACAACAACACCTCAACAA
1 TG-TA-ACGCCCCAAAATTTAAGTCTCTAAT-TTT-TGCATGTTTTGAC-ACAA-A--T------
* * ** * * ** * ** * * ** * **
40773260 CGAGTAGCCTGATCTGCTGTCGAA--CCAAACCGCAATCT-ATTGTGATTTCGGCCTCTACGTA-
52 ----T-GCTTG-TTTG-T-TTTAATGGCTAA--GTGATTTGGGTGTG-TATGGGAGTGTTTG-AG
* ** * *** ***** * * * *
40773321 ATCCACCCAGTTGACTACGAACG-GAAGGAATCCCCAAAACAGTTTTGAGAGTTATTTTTCTTTG
105 A---AGCC---TGGGTTC-AA-GTCTTGG---CCTTGGCACAATTTT--TAGTT-TTTCTC-TTA
** * ** *** ** * ** * *
40773385 AA-GGCTGCTAGACTCAAACAAAG-AAAAACGGGATTATATATATCCTTTTATTTTAGGGTTTTT
155 AATGAAT-CTGGA--C--AC-TGGCACTTA-GGCCTTTTATATAT--TAATA-CTT---GTTTTA
* * ** ** * * * ** ** * ****** *** * * *
40773448 TTA-AGAATTA-AATAAAT-AT--AATAATATTTTAATCCAAAATTATAAT-TACAT-TAA-TTA
207 TGACACAAAGAGCCT-ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC-TGCAACGTG
*** ** * * * * * * ** *
40773505 TAATATAAGTTCG-GTA-AACCATATA-TTT-ATTTGAACTCTTATGCTAACCAAATTCATG-TC
270 TGGGA-CCGATCGCTTATAAAC-TAGAGTTTCCTCT-AA-AATTA-G---ACCAGATTCATGAT-
* * * * * * * ***** * * * * * *
40773565 CTCACTAT-ACGTACAACAACCTTGTACATAATGTGTTGGAAATTTGATTACCGAATTAAATTAA
326 GT--GTTTCACGT----C-TCCATG--C-TAAGGCGTTATCGCTCTGA-T-CCCACTCACA-TAG
* * * * ** * * ** ** * * ** * ** ** *
40773629 TTCTATAATTAATTTA-ATTCAAGCGACCCCAAAAATAAT-ACCAACTATGGTTTATTCC-GTTC
378 TAC--CAGTTGA-GGAGATTGAGGTTAGGCC--AGAT-CTGACCTTCGA-GG-AGAAGCCAGTGC
* * * * ** * * * * * *
40773691 ATTTCAACTATAGGGTGTGACCCTATAGGTTCTTGTAACGTTAGCAGTAACACTAGAACGATTCT
435 A----GA-T-T---TTG-GACCGT-GAGGTT-AAGTTAC--T-G-AGGAAGA--A-ATCTATTCC
* * ** * ** ** * * ** * *
40773756 AAT-GCTACGAACAATG-AGTGGC---ATCTAGCAGTGCATCA-TTGCTACCTAAG-TCAC-AAG
481 ATTAG-T-C-AA-AGTGCTTTGGCGTAATC-A-CAGTTCAGAAGAAGCCACGTGGGAACCCGAAG
* * * *** * * * * * *
40773813 AGATCATGATTCGACA-TAACCTTTTTATGATTAACCTTTTATG--CA-AT-AATCCTT-AAGTC
540 AG-GC--GATGCGACAGCAA------TA-CCCTCATCTTTTCTGACCAGGTAAAT--TTCGAG-G
** * *** * *
40773872 CT-TTATCTCTGGATTGGACACAAGTCATGGAAT
592 CTGAAAT-T-TTG-TT--A-A-AAGGGGTAGAGT
* ****** * * ** * **
40773905 AGTCACACTTGCATTGTCCATTCCATGT-TCCTTGATATCTTAAGCA-GACTACGACATACAAAT
1 TGT-A-AC--GC-CCCAAAATT-TAAGTCT-C-T-A-AT-TTTTGCATG-TTTTGAC--ACAAAT
* *** * * ** ** * * * *** * * *
40773968 AAG-TATG-ACATTTAATATCGACTTATTTGAGCATGGCTATGCATTTCTAGTCTCACTTAATCA
52 -TGCT-TGTTTGTTTTA-AT-GGC-TAAGTGA-TTTGGGTGTGTA-TGGGAGTGT---TTGA-GA
** * * ** ** *** *** * * * * **
40774031 AG--TGGCCT-AAGATATT---ATTCCCATTATGTAGGAGGGACTTATCCTATATCGACCAACCA
106 AGCCTGGGTTCAAG-TCTTGGCCTTGGCACAAT-TTTTA-GTTTTTCTCTTAAAT-GA--ATCTG
* * * * ** ** *
40774090 TATCCCT--CTACATA-G-ATTGTGGTATATCCA-ACATCAGTCTTTATAGA-AC--A-A-CC-A
165 GA-CACTGGC-ACTTAGGCCTT-TTATATATTAATAC-T-TGT-TTTAT-GACACAAAGAGCCTA
* * * * * ** * *** * ** * * **
40774144 --GTTACAGT-GTACGTTTAACT--GTATCAAAATATACAACTCACGATGTTAGGATTATGAT-G
223 TTGGTCCAGTGGTA-GGTTCATTGGGCCTTACCGTGTACTGC-AACG-TG-TGGGA--CCGATCG
* ** ** * * * * * * * *
40774203 ATCTCA-AGTCT-GAGGATCATATAAATATTA-ATC--ATT-ATGAGTAATGTCGTGACAAT-TA
282 --CTTATAAACTAGAGTTTCCTCTAAA-ATTAGACCAGATTCATGA-T-GTGT-TTCAC-GTCTC
** ** ** * * * * ** * * **** * *
40774261 CATAATAATCCAAGAAACATACTCATAACGGGTCAGTCCAAT-ATGTTGTTCTCTAACACA-CAT
340 CATGCTAAGGC--G--TTAT-CGC-T--CTGATC---CCACTCACATAGTAC-C-AGTTGAGGAG
* * * * * * * * * * ** ** *
40774324 ATTCATGTAATG--A-TTCTGACATTC---CA-TA-TCAATGACA-ACTCTTTATCATCAATCA-
392 ATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTG-CAGA-T-TTT-GGA-CCGTGAG
** * * * ** * * *
40774379 ACTACACGTTAGTCTTA--ATGCATTATC-ATTGTCC-TATACAACAATAATAC-TTGAC-TAAG
452 GTTA-A-GTTA--CTGAGGAAG-A-AATCTA-T-TCCAT-TA-GTCAA-AGTGCTTTGGCGTAA-
** ** * * * *** * * * *** * * ** *
40774438 GAACTTTTAAGAATAA-TCA--TATTATTCTC--AG-GAC-ATTATTATA-AAATA-GTTTAT-T
505 TCACAGTTCAGAAGAAGCCACGTGGGA-ACCCGAAGAGGCGA-TGCGACAGCAATACCCTCATCT
* * * * * *** * * ** *
40774493 TATAT-ACACAGAAATGAAACTGAAAT-AATAATAGTAATGCCTTATATTAATAAACATGATAAA
568 TTTCTGAC-CAG--GT-AAA-T---TTCGAGGCT-GAAAT---TT-TGTT-A-AAA-GGGGT--A
*
40774556 TCAAGT
615 --GAGT
* *** * * * * * * ** * * ** * *
40774562 ATGTTA--TTACAACCATCTCA-TGAT-TGATCTTTGGGCATACTCTAACA-AGCAATACCCT-C
1 -TGTAACGCCCCAA-AATTTAAGT-CTCTAAT-TTT-TGCATGTTTTGACACA--AATTGCTTGT
* * * * * * * * * * * * **
40774621 AT-CTTT-CTGACCAGGTAAATTTCGAGG-CTG-AT---ATTTTTTTA-AAG---GGGGTAGAGT
59 TTGTTTTAATGGCTAAGT-GATTT-G-GGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAG-
* * * * * * * ** * **
40774675 TGTAATGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAAATGCTTGTTTGTTT
120 TCT--TG-GCC-----TT--GGCAC-AATTTTT--A-GTTTT-TCTCTTAAATG--AATCTG-GA
* * * * * * * * * * ** * * *
40774739 TAATGG--CTAAGTG-ATTTGGGTGTGTA-TGAGA-GTGTTTGA-GA-AGC-CTGGGTTCAAGTC
167 CACTGGCACTTAG-GCCTTT---TATATATTAATACTTGTTTTATGACA-CAAAGAG--C--CTA
** ** ** * *** ** * * * ** *
40774796 TTGCCCCAG-GCACAATTTTTAGTTTTTCTCTTA-AATGAATCTGGACAC---TGGCACTTA-GG
223 TTGGTCCAGTG--GTAGGTTCA-TTGGGC-CTTACCGTGTA-CTGCA-ACGTGTGGGACCGATCG
* * * * ** * ** * * * * *
40774855 CCTTTTATATATTAATACTTGTTTTATGACACAAAGAGTCTATTGGTCCA-G-TGGTAGGTTCAT
282 -C--TTATAAACT-AGAGTT-TCCTCT-A-A-AATTAGACCA--GATTCATGAT-GT-GTTTCA-
* * * * * * * * * ** *
40774918 TGGGCCTTACCTTGTACTGCAA--CG-TGT-GCGACTGAT--CACTTATAAACTA-GGGTTTCCC
334 --CGTC-T-CCATG--CT--AAGGCGTTATCGC-TCTGATCCCACTCACATAGTACCAG-TT--G
** * *** ** * * * * ** *
40774976 CTGAAATT-AGAACAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCCTTA-TCGCTCTGAT
387 AGGAGATTGAGGTTAG-GCCA-GATCTG----ACCT-TCGAGGAGAA-GCC--AGT-G--CAGAT
*** ** * * ** * * * **
40775039 CACGCTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGACAGATCTGACCTTCGAGGAG--AAG
439 TTTGGAC-CGT-G-A--GGTT-AAGTTACTGAGG--AAGA-A-ATCT-A--TTCCATTAGTCAA-
* * * *
40775102 CTAGTGCGGATTTTGGACCGTGAGGT-AAAGTTACTGAGGAAGAGGCCACGTGGGAACCCGAGGA
490 --AGTGC----TTTGG--CGT-A-ATCACAGTT-C--A-GAAGAAGCCACGTGGGAACCCGAAGA
* * * * *
40775166 GGCAATGCGACAGCAAGACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGCTAAAATTTTGTTG
541 GGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTA
**
40775231 AATTGGGTAGAGT
606 AAAGGGGTAGAGT
* * **
40775244 TGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAA-TGACATGTTTACTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTG-CTTGTTTGTTT
* * *
40775308 TAATGGCTAAGTGATTTGGGTGTTTGTGGGAGTGTTTGAGAAGCTTGGGTTCAAGTCTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* *
40775373 GGCACAA-TTTTAGGTTTTTCTCTTAAATGAATCTTGACAGTGGCACTTAGGCCTTTTATATATT
130 GGCACAATTTTTA-GTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * *
40775437 AATACTTGTTTTATGACACAATGAGCCTATTGGTCCAGTGGTAGGTTCCTTGGGCCTTACTGTGT
194 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
*
40775502 ACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTAT-CTCTGAAATTAGACCAGATTCAT
259 ACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTT-TCCTCTAAAATTAGACCAGATTCAT
* * * * *
40775566 GATGTGTTTCACGTCTCAATGCTAAGGCATTATTGCTATGACCCCACTCACATAGTACCAGTTGA
323 GATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* *** * * * *
40775631 GGAGTTTGAGGTTAGGGTTGATCTGACCTTTGAGGAGAAGCTAGTGCGGGTTTTGGACCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * * *
40775696 TAAAGTTACTGAGGAAGAAATCTATTCCATTCGGT-AAAGTGCTTTAGCGTAATCACCGTTCAGA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATT-AGTCAAAGTGCTTTGGCGTAATCACAGTTCAGA
** * *
40775760 AGAAGCCACGTGGGAACCAAAAGAAGCGATGCGACAGCAATACCCTTATCTTTTCTGACCAGGTA
517 AGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTA
* * * *
40775825 AATTTTGAGGCTGATATTTTTTTAAAGGGGGTAGAGT
582 AATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40775862 TGTAATGCCCCAAAATTTTAGTATCTAATTTTTGCATGTTTTGACACAAAATGCTTGTTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* *
40775927 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTGGAGAAGCCTGGGTTCAAGTCTTGCGCC-A
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTG-GCCTT
*
40775991 GGCACAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCACTTAGGCCTTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40776056 ATCCTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * *
40776121 CTTG-AACGTGTGGGACTGATCACTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATG
260 C-TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
40776185 ATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
324 ATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
*
40776250 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGC-GAATTTTGGACCGTGAGG
389 GAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGG
* * **
40776314 TGAAGTTACTGAGGAATAAATCTATTCCATTAGTCAAAGTGCTTTTACGTAATCACAGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * *
40776379 GAGGCGACGTGGGAACCC-AAGGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCAGGAA
518 GAAGCCACGTGGGAACCCGAA-GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTA
* * * *
40776443 AATTTTGAGGATAAAATTTTTTTAAAAGGGGTAGAGT
582 AATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * * *
40776480 TGTAATGCTCCAAAATTTAAATCTCTAATTTTTGCATGTTTTGACACAAAATGCTTATTTGTTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * **
40776545 AATGGCTAAGTGATATGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGCCCCAG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40776610 GCACAATTTTTAG-TTTTCTCTTAAATGAATCTGAACACTGGCACTTAGGCCTTTTATATTTTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40776674 TCCTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * * *
40776739 TGCAATGTGCGGGACTGATCACTTATAAGCTAGGGTTTCCTCTAAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * * *
40776804 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCACGCTGACATAGTACCTGTTGAAGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * *
40776869 GATTGAGGTTAGGACAGATCTGACCTTCGAGGAGAAGCTAGTGCGGATTTTGGACCGTAAGGTTA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* * * *
40776934 AGTTACTAAGGAAAAAATCTATTCCATTAGTCAAAGTACTTTGGCGTAATCACAATTCAGAAGAA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * * * *
40776999 GCCACGTGGGAACCCAAAGAGGTGATGCAACA-AAATAACCCTCATCTTTTCCGACCAGGAAAAT
521 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAAT-ACCCTCATCTTTTCTGACCAGGTAAAT
40777063 TTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
585 TTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * * *
40777097 TGTAATGCTCTAAAATTTAATTCTCTAATTTTTGCATGTTTTGACACAAAATT-CTT-TTTTTCT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGT-T
*
40777160 TTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCTTGGGTTCAAGTCTT-GCCT
64 TTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCT
* *
40777224 CTGACACAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCACTTAGGCCTTTTATATAT
129 -TGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAT
* *
40777289 TAATACTTGTTTCATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTG
193 TAATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTG
* ** * * *
40777354 TATTGCAACGTGTGGGATTGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACTAGATTCAT
258 TACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCAT
* * *
40777419 GATGGGTTTCACGTCTCCATGATAAGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
323 GATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * * * *
40777484 GGAGATTGAGGTTAGGCTAGATCTGACCTTCAAAGAGAAGCTAGTGCATATTTTGTACCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * * * *
40777549 TGAAGTTACTAAGTAAGAAATCTATTCCATTAGCCAAAGTGCTTTGGCGTAATCACAGTTTAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * * *
40777614 GAAACCACGTGGGAACCTGAAGATGAGATGCGACAGCAATACCCTCAGT-TTTT-TTACCAGGAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCA-TCTTTTCTGACCAGGTA
40777677 AATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
582 AATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * * * * *
40777714 TGTAATGCTCCAAAATTTAATTCTCTAATTTTTCCATGTTTGGACACAAAATT-CTTATTTATTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGTTT
* * *
40777778 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGACTTGCCCCT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* *
40777843 GGCACAATTTTTTGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCTTTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* *
40777908 ATACTTGTTTTATAACACAAAGAGCCTATTGGTACAGTGGTAGGTTCATTGGGCCTTACCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * *
40777973 CTGCAACGTGTGGGACTGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * *
40778038 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCTCTCTGAACCCACTCACATAATACCAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * *
40778103 AGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAAGCTAGTGC-GAATTTTAGACCGTGAGGT
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGT
* * * * * * * ** * *
40778167 GAAGTTACTTAAGAAGGAATCTATTCCGTTAGTCAAAGAGTTTTTTCGTAATCATAGTTTAGAAG
454 TAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * * *
40778232 AGGCCACGTGGGAACCCGATGAGGCAATGCGACAGCAAGACCCTCATCTTTTCTGACCAGTTAAA
519 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
* *
40778297 TTTGGAGGCTGAAATTTTGTT-GAAGTGGGTAGAGT
584 TTTCGAGGCTGAAATTTTGTTAAAAG-GGGTAGAGT
* * *
40778332 TGTAAC-CCCCAAAATTTAAGTCTTTAATTTTTGCACGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * * * * *
40778396 AAAGACTAAGTGATTTGGGTGTGTGTGGGAGTATTTTAGAAGCCTGGATTCAAGTCCTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
*
40778461 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * * *
40778526 TACTTGTTTTCTGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTCGGTCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * *
40778591 TGCAACATGTGGGACC-ATTCGCTTATAAACGAGAGTTGCCTCTAAAATTAGACCAGATTCATGA
261 TGCAACGTGTGGGACCGA-TCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * *
40778655 TGTGTTTCACGCCTCCATGCTAAGGCGTTATCGGTCTGATCCCACTAACATAGTACCAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * *
40778720 AGATTGTGGTTAGGCCAGATCTGACCTTCGATGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTG
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* * *
40778785 AAGTTATTGA-G--G-----------A--AG---AAGTGCTTTGGCGTAATCACAGTTTAGAGGA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * *
40778831 AGCCACGTGGGAACCCGAAGAGGCAATGCAACAGCAATACCCTCATCTTTTCTGACCAAGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* *
40778896 TTCGAGGCT-AAATTTTTTTTAAAGGGGGTAGAGT
585 TTCGAGGCTGAAA-TTTTGTTAAAAGGGGTAGAGT
* * * * *
40778930 TGTAACGCCCCAAAACTTAAATTTCTAATTTTTGCATGTTTTGACACTAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40778995 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTGGAGAAGCCTTGGTTCAAGTCATGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * **
40779060 GCTCAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTGAGGTTTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40779125 TACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGTTGATTGGGTCC-TACCGTGTA
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGG-CCTTACCGTGTA
** *
40779189 CTGCAACGTGTGGGAATGATCGCATT-TAAACTAGAGCTTT-CTCTGAAATTAGACCAGATTCAT
260 CTGCAACGTGTGGGACCGATCGC-TTATAAACTAGAG-TTTCCTCTAAAATTAGACCAGATTCAT
* * * *
40779252 GATGTGTTTCACGTCTCCATGATAAGGCGTTATCGCTCTAATCCCACTCACATAGTACCGGTTAA
323 GATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * *
40779317 GGAGATTGAGGTTAGGCCAGATCTGACCATCGACGAGAAGCCAATGCAAATTTTGGACCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* *
40779382 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTGAAAAGTGTTTTGGCGTAATCACAGTTCAGA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGT-CAAAGTGCTTTGGCGTAATCACAGTTCAGA
* * * *
40779447 ATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGGAATACCCTCATCTTTTTTGACCAGGTA
517 AGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTA
* * *
40779512 AATTTCGAGGCTAAAATTTTTTTAAACGGGGTAGAGT
582 AATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* ** *
40779549 TGTAACGCCGCATTATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40779614 AATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTGGAGAAGCCTTGGTTCAAGTCGTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * **
40779679 GCTCAATTTTTAGTTTTTCTCTTAAATGAATATGGACACTGGCACTGAGGTTTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40779744 TACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGTTGATTGGGTCC-TACCGTGTA
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGG-CCTTACCGTGTA
** *
40779808 CTGCAACGTGTGGGAATGATCGCATT-TAAACTAGAGCTTT-CTCTGAAATTAGACCAGATTCAT
260 CTGCAACGTGTGGGACCGATCGC-TTATAAACTAGAG-TTTCCTCTAAAATTAGACCAGATTCAT
* * * ** *
40779871 GATGTGTTTCACGTCTCCATGAC-AAGGCGTTATTGCTCTAATCCCACTCGCATAGTACTGGTTA
323 GATGTGTTTCACGTCTCCATG-CTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTG
* *
40779935 AGGAGATTGAGGTTAGGCCAGATCTGACCATCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAG
387 AGGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG
* * *
40780000 GTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTGAAAAGTGTTTTGGCGTAATCACAGTTCAA
452 GTTAAGTTACTGAGGAAGAAATCTATTCCATTAGT-CAAAGTGCTTTGGCGTAATCACAGTTCAG
* * * *
40780065 AATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGGAATACCCTCATCTTTTTTGACCAGGT
516 AAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGT
*
40780130 AAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGT
581 AAATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40780168 TGTAACGCCCCAATATTTAAGTCTCTAATTTTTGCAGGTTTTGACACAAATTGCTTATTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* ** * *
40780233 AATGGCTAAGTGATTTGGGTGTGTATGGTAGTGTTCAAGAAGCCTCGGTTCAAGTCCTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* **
40780298 GCACAATTTTTAGTTTTTCTTTTAAATGAATCTGGACACTGGCACTTAGGTTTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * *
40780363 TACTTGTTTTATGACACAAAGAGCCTATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * *
40780428 TGCAACGTGTGGGACTGATCGCATATAAACTAGAGTTTTCTCTGAAATTAGACCAGATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * *
40780493 TTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTAATCCCACTCACATAGTACCGGTTAAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * *
40780558 GATTGAGGTTAGGCCAGATCTGACCTTCGACGTGAAGCCAGTGCAGATTTTGGACCATGAGGTTA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* ** * * * * *
40780623 AGTTACTGAGGAAGAAATCTGTTCTGTTAGTGAAACTTGCTTTTGCGTAATCATAGTTCAGAATA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAA-GTGCTTTGGCGTAATCACAGTTCAGAAGA
* ** *
40780688 AGCCACGTGGCAACCCGAAGAGGCGATGCGACAATAATACCCTCATCCTTTCTGACCA-G-----
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* *
40780747 -T------T-AAATTTCG-----A--GGTCGAGT
585 TTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40780766 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTCAAAAAAATTTGCTTGTTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAA-TTGCTTGTTTGTTT
* * * *
40780831 TAATGGCTAAGTGATTTCGGTGTGTATGAGAGTGTTTGAGAAGCCTAGGTTCAAGTTTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * * *
40780896 GGTACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATTGACACTTAGGCCGTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* *
40780961 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGACCTTACCGTGTT
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
** * * * * * *
40781026 CTAAAACGTGTGGGACCAATCGCTTATAAACTTGAGTTGCCTTTGAAATTAGACGAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * *
40781091 TGTGTTTCATGT-TCCCATGCTAAGGCATTATCGCTCTGATCCCACTCACAGAGTACCAGTTGAG
325 TGTGTTTCACGTCT-CCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * * *
40781155 GAGATTGAGGTTAGGCTAGATCTGACCTTCGAGGAGAA-CACTGTACAGATTTTAGACCGTGGGG
389 GAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC-CAGTGCAGATTTTGGACCGTGAGG
* *
40781219 TTAAGTTACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * *
40781284 GAACCCACGTGGGAAACCGAAGAGGCGATGGGACAGCAATACCCTCATCTTTTCTAACCAGGTAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* *
40781349 ATTTCGAGGTTGAAATTTTGTTAAAGGGGGTAGAGT
583 ATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
** * * * *
40781385 TCCAACGCCCCAAAATTTAAGTTTCTAATTTTTGCATGTTTAGACACAAATTGTTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
*
40781450 AATGGCTAAGTGATTTGGGTGTGTATGAGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* *
40781515 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATTGACACTTAGGCCTTTTATATATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* * *
40781580 TACTTGTTTTATAACACAAAGAGCCTATTGGTTCAGTGGTAGATTCATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * * *
40781645 TGCAACGTGTTGGACCAATCGCATATAAACTTGAGTTGCCTCTGAAATTTA-ACCAGATTCATGA
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCT-AAAATTAGACCAGATTCATGA
* * * * * *
40781709 TGTGTTTCACGTCCCCATGCTAAGGCATTATCACTCTGATCCCACTCACATACTACCA-CTAAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
** * * * * * * * * *
40781773 AAGAAATCT-ATTCCATTA-GTCAAAGTGCTTTGGCGTAATCACAGTTTAGAAG-AAG-CCACA-
390 -AG--AT-TGA---GGTTAGGCCAGA-T-C--TGACCT--TC-GAG--GAGAAGCCAGTGCAGAT
* * ** * ** * * ** * * **
40781833 -TGGGAACCTGAAGAGGCGATGCGA-T-AGCAATACCCTCACCCTTTCTAACCATGTAAATTTTG
439 TTTGG-ACC-G-TGAGGTTAAGTTACTGAGGAAGA-----AATCTAT-T--CCAT-T--A-GTCA
* * * * * * * ** ** ** * * *
40781895 AGGTTGAAATTTTG-TTAATGGGGGTAGAGTT--GTAACACCCCCAAAT-TTAAGTCACTAATTT
489 AAG-TG--CTTTGGCGTAAT-----CACAGTTCAG-AAGA-AGCCACGTGGGAA--CCCGAA--G
** * * ** * * * ***
40781956 TTGC-ATGTTTTGACAGAAAT-TGCT--TGTTTGCTTAATTGGCTAAGTGATTTC-AGTG-TGTA
540 AGGCGATG---CGACAGCAATACCCTCATCTTTTCTGACCAGG-TAA---ATTTCGAG-GCTG-A
* * ** *
40782015 GGGGAGTGTTTG--AGAAGCCTGGGTTCAGG
596 ----AAT-TTTGTTAAAAG---GGGTAGAGT
* ** * * * *** * *** *
40782044 TCT-TGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAAT-CTTGACACTGGCACATAGGTG
1 TGTAACGCC---CCAAAATTT-AAG----TCTC-T-AATTTTTGCATG-TTTTGACACA-A----
* * * * * * * *
40782107 TTTTATTGATTAATACTTGTTTT-ATGACACAAAGAGCCTATT--G-GTCTAGTGGTAG-GTTCA
50 ----ATTGCTT-GT--TTGTTTTAATG--GCTAAGTG-AT-TTGGGTGTGTA-TGGGAGTG-T--
* **** * * * * * * * ** * *
40782167 TTGGGCCTTTCTGTGTACTGCAACATGTGGGACTGATCGCATATAAACTTGAG-TTTCCTC-T-A
100 TTGAG-AAGCCTGGGT--T-CAA-GTCTTGGCCT--TGGC--ACAATTTTTAGTTTTTCTCTTAA
* * * * * ** * * * ** ** * ** * * ** *
40782229 A--AAT-TAGAC-CAGATTCA-TGATGTGTTTCATGTCTCCAGGCTAACGCGTTATCACTCTGAT
156 ATGAATCTGGACACTG--GCACTTAGGCCTTTTATATATTAATACT--TGTTTTATGACACAAAG
** * * * * ** * * *
40782289 CCCACTCACATAGTACCAATTG-AGG-AGATTGAGG--TTA-GGCTAG-ATCTGACCTAA-GAGA
217 AGC-CT-A-TTGGT-CCAGTGGTAGGTTCATTG-GGCCTTACCG-T-GTA-CTG--C-AACGTGT
* * * * * * * * ** * * * * * *
40782347 AGAAGCCAATACGGATTTTGGACCGT-GAGGTTAATTTACTAA--AGA-AAAAATC-T-AT-TCC
271 GGGA-CCGAT-C-GCTTAT-AAAC-TAGAGTTTCCTCTA-AAATTAGACCAGATTCATGATGT-G
* ** ** * * * *** * * * * **
40782405 ATT-A-GTC-AAAGTGCTTTGGCGTAATCAAGTTCAGA-AGAAGC-CACGTGGGAACCCGAAGAG
329 TTTCACGTCTCCA-TGCTAAGGCGTTATC--GCTCTGATCCCA-CTCACAT-AGTACCAGTTGAG
* * * ** *** ** * * *
40782465 GCGATGCGACAGTAATACCCTCTTCTTTTCTGACCTT--TTGAG--G---TTG-AAATTTTGTTA
389 GAGAT-TGA-GGT--TA--GGC--CAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTG-GA
** * ** **** * * ** * **
40782522 AAG-GGGGGAAAGTTGTAAC-GCCCTA-AAATTTAAGTCACTAATTTTTGC--A-TGTTTTGAAA
445 CCGTGAGGTTAAG-T-T-ACTGAGGAAGAAATCT-ATTC-C--ATTAGT-CAAAGTGCTTTG-GC
** ** * ** ** ** *** * * * * *
40782581 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGG--TGTGTATGGGAGTGTTTGAGA-AGC
501 GTAATCAC-AG-TT-C-AGAA--G--AAGCCACGTGGGAACCCG-AAGAG-GCG-ATGCGACAGC
* **** ** * * ** * * *** *** * * *
40782643 -CTGGGTTCA-AGTGT-TGGCCTTTGCACATTTTTTGG-T-TTTTCTC-TT-AAA----T-GAAT
555 AATACCCTCATCTTTTCTGACC-AGGTAAATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* ** *** * ** **
40782696 CTGGACACTGGCACTTAGGCCTTTTATA-TAT-TAATACTTG--T-TTTGTGACACAAAGAGCTT
1 -TGTA-AC--GC-CCCA--AAATTTA-AGTCTCTAATTTTTGCATGTTT-TGACACAAATTGCTT
* ** * * ** * *
40782756 ATTT-TTCCACTGG-TAGGTTCATTGAACCTTACCGTGTACTGAAAGATATGGGACCGATCGCTT
57 GTTTGTTTTAATGGCTA-----AGTG-A--TT----TG-GGTG--TG-TATGGGA--G-T-GTTT
* * * * * **** * * *
40782819 -ATAAACTTGAGTTTC--CTC-TAAAATTAG-ACCAGATTCATGATGTGTTTCACGTCTCCATGC
102 GAGAAGCCTG-GGTTCAAGTCTTGGCCTTGGCA-CA-ATT-TTTA-GT-TTT----TCT-C-T--
* *** * * * * * * **
40782879 TAAGGCATTATCACTCT-GATCACACACACGTAGTACCTGTT-GA-A--GAGA-TTGAGGTT-TG
153 TAA---ATGA--A-TCTGGA-CACTGGCACTTAG-GCCTTTTATATATTAATACTTG-TTTTATG
* ** * * *** * ** * **
40782937 AC-CAAATCTGACCTTCTAGGAGGAGCCAGT--TCAGATT--TTGTATCGTAAGGT-TA-AGGTA
209 ACACAAA---GAGC--CTA-TTGG-TCCAGTGGT-AGGTTCATTGGGCCTTACCGTGTACTGCAA
* * * * * * * *
40782995 C-TGAGGAAGAAATCTATTC-CATTAGTCAAAAT-G-CTTTGGC-GT--AA-TA-A-CA-ATTGA
266 CGTGTGG--G--ACCGA-TCGC-TTA-T-AAACTAGAGTTT-CCTCTAAAATTAGACCAGATTCA
* * * ** * * * ** * * * *
40783049 -GAAGAAG--CCACGTGGGAACCA-GATGAGGCGATA-CGACAATAATACCCCCTGAAATTAG-A
322 TGATG-TGTTTCACGT---CTCCATGCTAAGGCGTTATCG-CTCTGAT-CCCACTCACA-TAGTA
* * * * * * **
40783108 CCAGATTCATGATGTGTTTCACG-TCTCCATGCTAAGGCGTTACGTTCTGATCCCACTC-ACATA
380 CCAG--T--TGA-G-G----A-GAT-T-GA-GGTTAGGC--CA-GATCTGA--CC-TTCGA-GGA
** * * * ** ** * *
40783171 GTAATACATGGGGAGATTGAGGTTCGG-CC-AGATCTTACCTT-CGGGGAGAAGCCAGTGCAGAT
424 G-AAGCCA-GTGCAGATT----TT-GGACCGTGAGGTTAAGTTACTGAG-GAAG--A----A-AT
* * * ** * * * ** * * * *
40783233 TTTTTACAGTGGGGTTAAGGTACTGAGGAAC-AAATCTATTCCA-TT-AGTTA-AAG-TACTTTG
474 CTATTCCA-T-TAGTCAAAGTGCTTTGG--CGTAATC-A---CAGTTCAG-AAGAAGCCAC-GTG
** * ** * * * ** * **** *
40783293 GCGTAA-TAGTAGTTCAGAAGAAGCCACGTGGGA-ACCC-GAGGGGGGATGC-GACAACAATAGC
529 G-G-AACCCGAAG---AGGCGATGCGAC-AGCAATACCCTCA---TCTTTTCTGAC--C---AG-
* * * ** * *
40783354 CTCATCATTTCTGACCAGGTAAATTTCTAGGCCGAAATTTCCTTAAAGGGGGTCA-TGT
579 GT-A-AATTTC-G---AGG----C---T-----GAAATTTTGTTAAAAGGGGT-AGAGT
* * * * * *
40783412 TGTAACGCCTCAAAATTTAAGTCTCTAGTGTTTGCATGTTTAGACACAAATTACTTGTTTGGTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40783477 AATAGCTAAGTGATTTAGGTGTGTATGGGACTGTTTGAGAAGCCTGGGTTCAAGTTTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * *
40783542 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAGGCGTTTTATAGATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
* *
40783607 TACATGTTTTATGACACAAAAAAGCC-ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
196 TACTTGTTTTATGACAC-AAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * * *
40783671 CTGCAACGTGTGGGACCGATCGCATATAAACTTGAGTTACCTCTAAGATTAGACCAAATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * * * *
40783736 TGTGTTTCACATCTCCATGCTAAGGCTTTATCTCTTTGATCCCACTCACATAGTACTAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * * * * * * *
40783801 AGATTGAGGTTAGGCTAGATCTGACCTTTGAGTATATGCCAGTACAGATTTTGGATCATGAGGTT
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* *
40783866 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAATCACAGTTCAGAAGA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * * *
40783931 AGCAACGTGGGAACCCAAAGAGGGGATGCGGCAGCAATACCCTCATCTTTTCTGACCTGGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
* * *
40783996 TTCGAGG-TCAAAATTTTGCTAAAGGGGGTAGAGT
585 TTCGAGGCT-GAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40784030 TGTAGTA-G-CCCAAAATTTAAGTATGTCATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCT
1 TGTA--ACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTT
*
40784093 TTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTAGCCT
64 TTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCT
* * *
40784158 TTGCACAATTCTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCGTTTTATATATT
129 TGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * * * * *
40784223 AATACTTGCTTTATGACACAAAGAGCTTATTGGTCCAGTTGTAGGTGCATTGAAG-CTTACTGTG
194 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTG-GGCCTTACCGTG
* * * * * *
40784287 TACTACAACGTTTGGGACTGACCGCTTATAAACTTGAGTTGCCTCTAAAATTAGACCAGATTCAT
258 TACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCAT
* *
40784352 GATGTGTTTCATGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACGTAGTACCAGTTGA
323 GATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * *
40784417 GGAGATTGAGGTTAGGCCAGATCCGACCTTAGAGGAGAAGCCAATGCGGATTTTGGACCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
*
40784482 TTAAGTTACTAAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-AGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * *
40784546 GAAGCCACGTGGGAACCCGAAGAGGTGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
* * *
40784611 ATTT-AAAGCTCAAAATTTTGTT-AAAGGGGTAGAGT
583 ATTTCGAGGCT-GAAATTTTGTTAAAAGGGGTAGAGT
* * * * *
40784646 TGTAACGCCCCAAAATTTAAGGCTCTAATTTTTGTATGTTTTGA-AGAAAATTGCTTGTCTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACA-CAAATTGCTTGTTTGTTT
* * *
40784710 TAATGGCTAAGTGATTTGGGTGTCTGTGGGAGTGTTTGAGAAGTC-GAGGTTCAAGTCTTGGCCT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG-GGTTCAAGTCTTGGCCT
*
40784774 TTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
129 TGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATT
* * ** * * **
40784839 AATACTTGTTTTGTGACACAAAGAGCTTATTTTTCAACTGGTAGGTTCATTGAACCTTACCGTGT
194 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* *** * *
40784904 ACTGAAACACATGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATG
259 ACTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * * * *
40784969 ATGTGTTTCACGTCTCAATGCTAAGGCGTTATCGCTCTGATCACGCACACGTAGTACCTGTTGAA
324 ATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * ** * * *
40785034 GAGATTGAGGTTTGACCAAATCTGACCTTTTAGGAGGAGCCAGTGCAGATTTTGTACCGTAAGGT
389 GAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* * * * *
40785099 TAAGGTACAGAGGAACAAATCTATTCCATTAGTCAAAGTACTTTGGCGTAAT-AGTAGTTCAGAA
454 TAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAA
* * * *
40785163 GAAGCCACGTGGGAACCCGAGGGGGCGATGCGACAACAATAGCCTCATCATTTT-TGACCAGGTA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATC-TTTTCTGACCAGGTA
* * * ** *
40785227 AATTTCTAGGC-CAAAATTTCCTAAAAGGGGGTAGTGT
582 AATTTCGAGGCTGAAATTTTGTTAAAA-GGGGTAGAGT
* * * *
40785264 TGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTAGACACAAATTGCTTGTGTGGTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
*
40785329 AATGGCTAAGTGATTTAGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
* * * *
40785394 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACATAGGCGTTTTATAGATTAA
131 GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
40785459 TACTTGTTTTATGACACAAAGAGCC-ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
196 TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
* * * * * * * * *
40785523 TGCAACGTGTGGGACCGGTCACATATAAACTTGAGTTGCCTCTGAGATTAGAACAAATTCATGAT
261 TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
* * * * *
40785588 GTGTTTCACATCTCCATGCTAAGGCTTTATCTCTTTGATCCCACTCACATAGTACTAGTTGAGGA
326 GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * * *
40785653 GATTGAGGTTAGGCCAGATCTGACCTTTGAGTATATGCCAGTACAGATTTTGGACCATGAGGTTA
391 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
* *
40785718 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAATCACAGTTCAGAAGAA
456 AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * *
40785783 GCAACGTGGGAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATT
521 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
* *
40785848 TTGA-GCTCGAAATTTT-TCT-AAAGGGGTAAAGT
586 TCGAGGCT-GAAATTTTGT-TAAAAGGGGTAGAGT
* * *
40785880 TGTAGCAG-CCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAAATTGCTTGATTGTTT
1 TGTAAC-GCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTT
* *
40785944 TAATGGCTATGTGATTTGGGTGTGTATGGGATTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* *
40786009 GGCACAATTTTTAGTTTTTCTCCTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
*
40786074 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * * * **
40786139 CTACAACGTTTGGGACTGATCGCTTATAAACTTGAGTTGCCTCGGAAATTAGACCAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* * *
40786204 TGTGTTTCATGTTTCCATGCTAAGGCGTTATCGCTCTGTTCCCACTCACATAGTACCAGTTGAGG
325 TGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGG
* * ** * *
40786269 AGATTGAGGTTAGGCCAGATCTGACCTTAGAGGAGAAGCCAATGTGGATTTTGGGCTGTGAGGTT
390 AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTT
* * *
40786334 AAGTTACTAAGGAAGAAATCTATTCCATTAGTCAAAGTTCTTTGGCGTAATC-CAGTTCAGAATA
455 AAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
* * * ***
40786398 AGCCACGGGGGAACCCGAAAAGGCGATGCGACAGTAATACCCTCATCTTTTCTGATTTGGTAAAT
520 AGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAAT
*
40786463 TTC-AAGCTCGAAATTTTGTT-AAAGGGGTAGAGT
585 TTCGAGGCT-GAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40786496 TGTAATGCCCCAAAATTTAAGGCTCTAATTTTTGCATGTTTTGA-AGAAAATTGCTTGTTTGGTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACA-CAAATTGCTTGTTTGTTT
*
40786560 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAATTCTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* *
40786625 TGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTAGATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* * * * * * * *
40786690 ATACTTGCTTTATGACACAAAGGGCTTATTGGTCCAGTTGTAAGTGCATTGAAG-CTTACTGTGT
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTG-GGCCTTACCGTGT
* * * * *
40786754 ACTGTAACATTTGGGACTGATCGCTTATAAACCT-GAGTTGCCTCTAAAATTAGACCAGATTCAT
259 ACTGCAACGTGTGGGACCGATCGCTTATAAA-CTAGAGTTTCCTCTAAAATTAGACCAGATTCAT
* *
40786818 GATGTGTTTCATGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACTAGTTGA
323 GATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGA
* * * * *
40786883 GGAGGTTGAGGTTAGGCAAGATCTGACCTTAGAGGAGAAGCCAATGCGGATTTTGGACCGTGAGG
388 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG
* * * *
40786948 TTAAGTTACTAAGAAAGAAATCTATTCCTTTAGTCAAAGTGATTTGGCGTAATCACAGTTCAGAA
453 TTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * *
40787013 GAACCCACGTGGGAACTCGAAGAGGCGATGCGACAGTAATACCCT-AGTCTTTTTTGACCTGGTA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCA-TCTTTTCTGACCAGGTA
* *
40787077 AATTTCTA-GCTCGAAATTTTATT-AAAGGGGTAGAGT
582 AATTTCGAGGCT-GAAATTTTGTTAAAAGGGGTAGAGT
* * * * * *
40787113 TGTAAGGCCCCAAAATTTAAGTCTCTAATTTTTACATGTTTTGA-AGAAAATTGTTTATTTGCTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACA-CAAATTGCTTGTTTGTTT
* *
40787177 TAATGGCTATGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCGGGGTTCAAGTCTTGGCCTT
65 TAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTT
* * *
40787242 TGCACAATTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTACATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* * ** * ***
40787307 ATACTTGTTTTATGGCACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTAAACCTTACCGTGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* ** *
40787372 CTGAAACAAGTGGGACCGATCGCTTATAAAC-ATGAGCTTCCTCTAAAATTAGACCAGATTCATG
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTA-GAGTTTCCTCTAAAATTAGACCAGATTCATG
* * * * * * * * *
40787436 ATGTGCTACACGTGTCCATACTAAGG-ATT-TCGGTCTGATCCCACTCAGATAGTACAAGTTGAA
324 ATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * * *
40787499 AAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTCGACCATGAGGT
389 GAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* ** *
40787564 TAAGTTACTGAAGAAGAAATCTATTCCATTAGGAAAAGTTCTTTGGCGTAATCACAGTTCAGAAG
454 TAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAG
* * * * *
40787629 AAGCCACGTGGGAACCCGAAGAGGCAATGCGACAGTAATACCCTCGTCTCTTCTGACCTGGTAAA
519 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAA
* * *
40787694 TTTTGAGG-TCGAAATTTTGTTAAAGGGGGTGGAGT
584 TTTCGAGGCT-GAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40787729 TGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTTGCTTT
1 TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
* * * *
40787794 AATGGCTAAGTGATTTGGGTGTCTGTGGGAGTGTTTGAGAAGTC-GGAGTTTAAGTCTTGGCCTT
66 AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGG-GTTCAAGTCTTGGCCTT
* * * *
40787858 TGCAGAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTGGCACTTAGGCCTTGTATATATTA
130 GGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTA
* ** * ** *
40787923 ATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCATGTA
195 ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
* * * * * * *
40787988 CTGAAACATGTGGGACCAATCACTTATAAACTTGAGTTTCCTCTGAAATTCGACCAGATTCATGA
260 CTGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGA
* ** * ** * * * *
40788053 TGTGCTTCACGTCTCCATGCTAAAACGTTAAT-GCTCTGATCACGGTCGCATAGTAACTGTTGAA
325 TGTGTTTCACGTCTCCATGCTAAGGCGTT-ATCGCTCTGATCCCACTCACATAGTACCAGTTGAG
* * * *
40788117 GAGATTGAGGTTAGACCAAATCTGACCTTCGAGGAAAAGCCAGTGCAGATTTTGTACCGTGAGGT
389 GAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGT
* * *
40788182 TAACG-TACTGAGGTAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAA
454 TAA-GTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAA
* * * * * *
40788246 GAAGCCACGTGGGAACCTGATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGACTAGGTAA
518 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAA
** * *
40788311 ATTTCGAGGCTGAAATTTTCCTAAAGGGGGTAAAGT
583 ATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
* * * *
40788347 TGTAACGCCCCAAAATTTACA-TATCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTT-TCA
1 TGTAACGCCCCAAAATTTA-AGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGT-T
40788410 TTAATGGCTAAGTGATTTGGGTGTGTATGG
64 TTAATGGCTAAGTGATTTGGGTGTGTATGG
40788440 TAGTTTTTTC
Statistics
Matches: 17154, Mismatches: 3115, Indels: 2267
0.76 0.14 0.10
Matches are distributed among these distances:
597 3 0.00
598 241 0.01
599 791 0.05
600 7 0.00
601 2 0.00
602 1 0.00
603 81 0.00
604 1365 0.08
605 15 0.00
606 2 0.00
609 5 0.00
610 2 0.00
611 10 0.00
612 18 0.00
613 2 0.00
614 2 0.00
615 233 0.01
616 1844 0.11
617 4603 0.27
618 3233 0.19
619 1793 0.10
620 516 0.03
621 4 0.00
622 12 0.00
623 7 0.00
624 2 0.00
625 4 0.00
626 4 0.00
627 4 0.00
628 15 0.00
629 20 0.00
630 24 0.00
631 16 0.00
632 15 0.00
633 16 0.00
634 13 0.00
635 8 0.00
636 5 0.00
637 19 0.00
638 8 0.00
639 3 0.00
640 11 0.00
641 10 0.00
642 21 0.00
643 37 0.00
644 8 0.00
645 25 0.00
646 32 0.00
647 63 0.00
648 32 0.00
649 35 0.00
650 31 0.00
651 14 0.00
652 50 0.00
653 46 0.00
654 29 0.00
655 34 0.00
656 47 0.00
657 47 0.00
658 37 0.00
659 37 0.00
660 27 0.00
661 27 0.00
662 28 0.00
663 14 0.00
664 11 0.00
665 11 0.00
666 13 0.00
667 36 0.00
668 20 0.00
669 18 0.00
670 29 0.00
671 16 0.00
672 24 0.00
673 32 0.00
674 32 0.00
675 21 0.00
676 22 0.00
677 25 0.00
678 37 0.00
679 61 0.00
680 88 0.01
681 66 0.00
682 82 0.00
683 56 0.00
684 46 0.00
685 41 0.00
686 49 0.00
687 19 0.00
688 34 0.00
689 32 0.00
690 37 0.00
691 32 0.00
692 41 0.00
693 37 0.00
694 26 0.00
695 29 0.00
696 20 0.00
697 15 0.00
698 25 0.00
699 8 0.00
700 18 0.00
701 18 0.00
702 5 0.00
703 3 0.00
704 13 0.00
705 9 0.00
706 5 0.00
707 8 0.00
708 6 0.00
709 14 0.00
710 12 0.00
711 10 0.00
712 19 0.00
713 11 0.00
714 6 0.00
715 9 0.00
716 10 0.00
717 11 0.00
718 5 0.00
719 9 0.00
720 25 0.00
721 15 0.00
722 6 0.00
723 6 0.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (618 bp):
TGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGTTTT
AATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTG
GCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAA
TACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTAC
TGCAACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGAT
GTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
GATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTA
AGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATT
TCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGT
Found at i:40779059 original size:599 final size:602
Alignment explanation
Indices: 40775140--40781766 Score: 7509
Period size: 618 Copynumber: 10.8 Consensus size: 602
40775130 AGTTACTGAG
* * * * * *
40775140 GAAGAGGCCACGTGGGAACCCGAGGAGGCAATGCGACAGCAAGACCCTCATCTTTTCTGACCAGG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* * * ** *
40775205 TAAATTTTGAGGCTAAAATTTTGTTGAATTGGGTAGAGTTGTAACGCCCTAAAATTTAAGTCTCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40775270 AATTTTTGCATGTTTTGACACAAA-TGACATGTTTACTTTAATGGCTAAGTGATTTGGGTGTTTG
131 AATTTTTGCATGTTTTGACACAAATTG-CTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
*
40775334 TGGGAGTGTTTGAGAAG-CTTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTAGGTTTTTCTCTT
195 TGGGAGTGTTTGAGAAGCCTT-GGTTCAAGTCCTGGCCTTGGCACAATTTTTA-GTTTTTCTCTT
* * *
40775397 AAATGAATCTTGACAGTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAATGAG
258 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
* ** * *
40775462 CCTATTGGTCCAGTGGTAGGTTCCTTGGGCCTTACTGTGTACTGCAACGTGTGGGACCGA-TCGC
323 CCTATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACC-ATTCGC
** *
40775526 TTATAAACTAGAGTTATCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCAATGCTAA
387 TTATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA
* * * * * * * ***
40775591 GGCATTATTGCTATGACCCCACTCACATAGTACCAGTTGAGGAGTTTGAGGTTAGGGTTGATCTG
452 GGCGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTG
* * * * * *
40775656 ACCTTTGAGGAGAAGCTAGTGCGGGTTTTGGACCGTGAGGTAAAGTTACTGAGGAAGAAATCTAT
517 ACCTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA-G-AG------A-
* *
40775721 TCCATTCGGTAAAGTGCTTTAGCGTAATCACCGTTCA
573 T--A----G-AAAGTGCTTTGGCGTAATCACAGTTCA
* ** * * *
40775758 GAAGAAGCCACGTGGGAACCAAAAGAAGCGATGCGACAGCAATACCCTTATCTTTTCTGACCAGG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* * * * * *
40775823 TAAATTTTGAGGCTGATATTTTTTTAAAGGGGGTAGAGTTGTAATGCCCCAAAATTTTAGTATCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40775888 AATTTTTGCATGTTTTGACACAAAATGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGTAT
131 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40775953 GGGAGTGTTGGAGAAGCCTGGGTTCAAGTCTTGCGCC-AGGCACAATTTTTAGTTTTTCTCTTAA
196 GGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTG-GCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* *
40776017 ATGAATTTGGACACTGGCACTTAGGCCTTTTATATATTAATCCTTGTTTTATGACACAAAGAGCC
260 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * *
40776082 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTTG-AACGTGTGGGACTGA-TCACT
325 TATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTAC-TGCAACGTGTGGGAC-CATTCGCT
* *
40776145 TATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAG
388 TATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAG
* * *
40776210 GCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCTAGATCTGA
453 GCGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTGA
* *
40776275 CCTTCGAGGAGAAGCCAGTGC-GAATTTTGGACCGTGAGGTGAAGTTACTGAGGAATAAATCTAT
518 CCTTCGACGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGTTAAGTTACTGA-G---------A-
* **
40776339 TCCATTAGTCAAAGTGCTTTTACGTAATCACAGTTCA
571 --GA-TAG--AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * *
40776376 GAAGAGGCGACGTGGGAACCC-AAGGAGGCGATGCGACAGCAAGACCCTCATCTTTTCTGACCAG
1 GAAGAAGCCACGTGGCAACCCGAA-GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAA
* * * * * * * * *
40776440 GAAAATTTTGAGGATAAAATTTTTTTAAAAGGGGTAGAGTTGTAATGCTCCAAAATTTAAATCTC
65 GTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * *
40776505 TAATTTTTGCATGTTTTGACACAAAATGCTTATTTGTTTTAATGGCTAAGTGATATGGGTGTGTA
130 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* * * **
40776570 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGCCCCAGGCACAATTTTTAG-TTTTCTCTTAA
195 TGGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * *
40776634 ATGAATCTGAACACTGGCACTTAGGCCTTTTATATTTTAATCCTTGTTTTATGACACAAAGAGCC
260 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * * * * *
40776699 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGCAATGTGCGGGACTGA-TCACTT
325 TATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGAC-CATTCGCTT
* * * *
40776763 ATAAGCTAGGGTTTCCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
389 ATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * * * *
40776828 CGTTATCGCTCTGATCACGCTGACATAGTACCTGTTGAA-GAGATTGAGGTTAGGACAGATCTGA
454 CGTTATCGCTCTAATCCCACTCACATAGTACCAGTT-AAGGAGATTGAGGTTAGGCCAGATCTGA
* * * * *
40776892 CCTTCGAGGAGAAGCTAGTGCGGATTTTGGACCGTAAGGTTAAGTTACTAAGGAAAAAATCTATT
518 CCTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT---G-----A--GA--
* * *
40776957 CCATTAGTCAAAGTACTTTGGCGTAATCACAATTCA
571 -GA-TAG--AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * * * *
40776993 GAAGAAGCCACGTGGGAACCCAAAGAGGTGATGCAACA-AAATAACCCTCATCTTTTCCGACCAG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAAT-ACCCTCATCTTTTCTGACCAA
* * * * * *
40777057 GAAAATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGTTGTAATGCTCTAAAATTTAATTCTC
65 GTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* *
40777122 TAATTTTTGCATGTTTTGACACAAAATT-CTTTTTTTCTTTAATGGCTAAGTGATTTGGGTGTGT
130 TAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* *
40777186 ATGGGAGTGTTTGAGAAG-CTTGGGTTCAAGT-CTTGCCTCTGACACAATTTTTAGTTTTTCTCT
194 ATGGGAGTGTTTGAGAAGCCTT-GGTTCAAGTCCTGGCCT-TGGCACAATTTTTAGTTTTTCTCT
* *
40777249 TAAATGAATTTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTCATGACACAAAGA
257 TAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGA
* * * **
40777314 GCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGTATTGCAACGTGTGGGATTGA-TCG
322 GCCTATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGA-CCATTCG
* * * * *
40777378 CTTATAAACTAGGGTTTCCTCTGAAATTAGACTAGATTCATGATGGGTTTCACGTCTCCATGATA
386 CTTATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTA
* * * *
40777443 AGGCATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCTAGATCT
451 AGGCGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCT
* * * * * *
40777508 GACCTTCAAAGAGAAGCTAGTGCATATTTTGTACCGTGAGGTGAAGTTACTAAGTAAGAAATCTA
516 GACCTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT--G--AG------A
* *
40777573 TTCCATTAGCCAAAGTGCTTTGGCGTAATCACAGTTTA
571 ---GA-TAG--AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * * * *
40777611 GAAGAAACCACGTGGGAACCTGAAGATGAGATGCGACAGCAATACCCTCAGT-TTTT-TTACCAG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCA-TCTTTTCTGACCAA
* * * * *
40777674 GAAAATTTCGAGGCTGAAATTTTGTTAAAAGGGGTAGAGTTGTAATGCTCCAAAATTTAATTCTC
65 GTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * **
40777739 TAATTTTTCCATGTTTGGACACAAAATT-CTTATTTATTTTAATGGCTAAGTGATTTGGGTGTGT
130 TAATTTTTGCATGTTTTGACAC-AAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* * * * * *
40777803 ATGGGAGTGTTTGAGAAGCCTGGGTTCAAGACTTGCCCCTGGCACAATTTTTTGTTTTTCTCTTA
194 ATGGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* *
40777868 AATGAATCTGGACACTGGCACTTAGGCTTTTTATATATTAATACTTGTTTTATAACACAAAGAGC
259 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * *
40777933 CTATTGGT-ACAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACTGA-TCGC
324 CTATTGGTCA-AGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGAC-CATTCGC
* *
40777996 TTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA
387 TTATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA
* * * *
40778061 GGCGTTATCTCTCTGAA-CCCACTCACATAATACCAGTTGAGGAGATTGAGGTTAGGCTAGATCT
452 GGCGTTATCGCTCT-AATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCT
* * * *
40778125 GACCTTCGAGGAGAAGCTAGTGC-GAATTTTAGACCGTGAGGTGAAGTTACTTAAGAAGGAATCT
516 GACCTTCGACGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGTTAAGTTAC-T--G-A-G-----
* * * ** * *
40778189 ATTCCGTTAGTCAAAGAGTTTTTTCGTAATCATAGTTTA
570 A----GATAG--AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * *
40778228 GAAGAGGCCACGTGGGAACCCGATGAGGCAATGCGACAGCAAGACCCTCATCTTTTCTGACC-AG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* * * *
40778292 TTAAATTTGGAGGCTGAAATTTTGTTGAAGTGGGTAGAGTTGTAAC-CCCCAAAATTTAAGTCTT
66 -TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * *
40778356 TAATTTTTGCACGTTTTGACACAAATTGCTTGTTTGCTTTAAAGACTAAGTGATTTGGGTGTGTG
130 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* *
40778421 TGGGAGTATTTTAGAAGCC-TGGATTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
195 TGGGAGTGTTTGAGAAGCCTTGG-TTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* *
40778485 AATGAATCTAGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTCTGACACAAAGAGC
259 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * *
40778550 CTATTGGTCCAGTGGTAGGTTGATTCGGTCTTACCGTGTACTGCAACATGTGGGACCATTCGCTT
324 CTATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCATTCGCTT
* * *
40778615 ATAAACGAGAGTTGCCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGCCTCCATGCTAAGG
389 ATAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * * *
40778680 CGTTATCGGTCTGATCCCACTAACATAGTACCAGTTGAGGAGATTGTGGTTAGGCCAGATCTGAC
454 CGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * *
40778745 CTTCGATGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTATTGAG-GA-AG-AAGTGCT
519 CTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAGAGATAGAAAGTGCT
*
40778807 TTGGCGTAATCACAGTTTA
584 TTGGCGTAATCACAGTTCA
* * * *
40778826 GAGGAAGCCACGTGGGAACCCGAAGAGGCAATGCAACAGCAATACCCTCATCTTTTCTGACCAAG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* * * *
40778891 TAAATTTCGAGGCT-AAATTTTTTTTAAAGGGGGTAGAGTTGTAACGCCCCAAAACTTAAATTTC
66 TAAATTTCGAGGCTGAAA-TTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* *
40778955 TAATTTTTGCATGTTTTGACACTAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
130 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* * *
40779020 TGGGAGTGTTGGAGAAGCCTTGGTTCAAGTCATGGCCTTGGCTCAATTTTTAGTTTTTCTCTTAA
195 TGGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* **
40779085 ATGAATCTGGACACTGGCACTGAGGTTTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
260 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
*
40779150 TATTGGTCAAGTGGTAGGTTGATTGGGTCCTACCGTGTACTGCAACGTGTGGGA--ATGATCGCA
325 TATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCAT--TCGC-
* *
40779213 TT-TAAACTAGAGCTT-TCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGATA
387 TTATAAACTAGAG-TTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTA
*
40779276 AGGCGTTATCGCTCTAATCCCACTCACATAGTACCGGTTAAGGAGATTGAGGTTAGGCCAGATCT
451 AGGCGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCT
* * *
40779341 GACCATCGACGAGAAGCCAATGCAAATTTTGGACCGTGAGGTTAAGTTACTGAGGAAGAAATCTA
516 GACCTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA-G-AG-------
*
40779406 TTCCATTAGTGAAAAGTGTTTTGGCGTAATCACAGTTCA
572 ----A-TA--G-AAAGTGCTTTGGCGTAATCACAGTTCA
* * * *
40779445 GAATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGGAATACCCTCATCTTTTTTGACCAGG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* * * * **
40779510 TAAATTTCGAGGCTAAAATTTTTTTAAACGGGGTAGAGTTGTAACGCCGCATTATTTAAGTCTCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
*
40779575 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGT
131 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40779640 GGGAGTGTTGGAGAAGCCTTGGTTCAAGTCGTGGCCTTGGCTCAATTTTTAGTTTTTCTCTTAAA
196 GGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * **
40779705 TGAATATGGACACTGGCACTGAGGTTTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
261 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
*
40779770 ATTGGTCAAGTGGTAGGTTGATTGGGTCCTACCGTGTACTGCAACGTGTGGGA--ATGATCGCAT
326 ATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCAT--TCGC-T
*
40779833 T-TAAACTAGAGCTT-TCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGAC-A
388 TATAAACTAGAG-TTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATG-CTA
* * **
40779895 AGGCGTTATTGCTCTAATCCCACTCGCATAGTACTGGTTAAGGAGATTGAGGTTAGGCCAGATCT
451 AGGCGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCT
*
40779960 GACCATCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAGGAAGAAATCTA
516 GACCTTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA-G-AG-------
*
40780025 TTCCATTAGTGAAAAGTGTTTTGGCGTAATCACAGTTCA
572 ----A-TA--G-AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * *
40780064 AAATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGGAATACCCTCATCTTTTTTGACCAGG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
*
40780129 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAATATTTAAGTCTCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40780194 AATTTTTGCAGGTTTTGACACAAATTGCTTATTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
131 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* ** * *
40780259 GGTAGTGTTCAAGAAGCCTCGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTTTTAAA
196 GGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
**
40780324 TGAATCTGGACACTGGCACTTAGGTTTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
261 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* *
40780389 ATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACTGA-TCGCATA
326 ATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGAC-CATTCGCTTA
** *
40780453 TAAACTAGAGTTTTCTCTGAAATTAGACCAGATTCATGATTTGTTTCACGTCTCCATGCTAAGGC
390 TAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
*
40780518 GTTATCGCTCTAATCCCACTCACATAGTACCGGTTAAGGAGATTGAGGTTAGGCCAGATCTGACC
455 GTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTGACC
* *
40780583 TTCGACGTGAAGCCAGTGCAGATTTTGGACCATGAGGTTAAGTTACTGAGGAAGAAATCTGTTCT
520 TTCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA-G-AG--A--------
* * *
40780648 GTTAGTGAAACTTGCTTTTGCGTAATCATAGTTCA
573 --TA--GAAA-GTGCTTTGGCGTAATCACAGTTCA
* ** *
40780683 GAATAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAATAATACCCTCATCCTTTCTGACC-AG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* *
40780747 ------T------T-AAATTTCG----A---GGTCGAGTTGTAACGCCCCAAAATTTAAGTCTCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40780792 AATTTTTGCATGTTTTCAAAAAAATTTGCTTGTTTGCTTTAATGGCTAAGTGATTTCGGTGTGTA
131 AATTTTTGCATGTTTTGACACAAA-TTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* * ** *
40780857 TGAGAGTGTTTGAGAAGCCTAGGTTCAAGTTTTGGCCTTGGTACAATTTTTAGTTTTTCTCTTAA
195 TGGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * *
40780922 ATGAATCTGGACATTGACACTTAGGCCGTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
260 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * ** * ** *
40780987 TATTGGTCCAGTGGTAGGTTCATTGGACCTTACCGTGTTCTAAAACGTGTGGGACCAATCGCTTA
325 TATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCATTCGCTTA
* * * *
40781052 TAAACTTGAGTTGCCTTTGAAATTAGACGAGATTCATGATGTGTTTCATGT-TCCCATGCTAAGG
390 TAAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCT-CCATGCTAAGG
* * * * *
40781116 CATTATCGCTCTGATCCCACTCACAGAGTACCAGTTGAGGAGATTGAGGTTAGGCTAGATCTGAC
454 CGTTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * * *
40781181 CTTCGAGGAGAA-CACTGTACAGATTTTAGACCGTGGGGTTAAGTTACTAAGGAAGAAATCTATT
519 CTTCGACGAGAAGC-CAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT---G-AG------A--
* *
40781245 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTTA
571 -GA-TAG--AAAGTGCTTTGGCGTAATCACAGTTCA
* * * * * *
40781281 GAAGAACCCACGTGGGAAACCGAAGAGGCGATGGGACAGCAATACCCTCATCTTTTCTAACCAGG
1 GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
* ** *
40781346 TAAATTTCGAGGTTGAAATTTTGTTAAAGGGGGTAGAGTTCCAACGCCCCAAAATTTAAGTTTCT
66 TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40781411 AATTTTTGCATGTTTAGACACAAATTGTTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
131 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40781476 GAGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
196 GGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * *
40781541 TGAATCTGGACATTGACACTTAGGCCTTTTATATATTAATACTTGTTTTATAACACAAAGAGCCT
261 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * * * *
40781606 ATTGGTTC-AGTGGTAGATTCATTGGGCCTTACCGTGTACTGCAACGTGTTGGACCAATCGCATA
326 ATTGG-TCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCATTCGCTTA
* *
40781670 TAAACTTGAGTTGCCTCTGAAATTTA-ACCAGATTCATGATGTGTTTCACGTCCCCATGCTAAGG
390 TAAACTAGAGTTGCCTCTGAAA-TTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * *
40781734 CATTATCACTCTGATCCCACTCACATACTACCA
454 CGTTATCGCTCTAATCCCACTCACATAGTACCA
40781767 CTAAGGAAGA
Statistics
Matches: 5359, Mismatches: 495, Indels: 310
0.87 0.08 0.05
Matches are distributed among these distances:
597 6 0.00
598 243 0.05
599 773 0.14
600 8 0.00
601 3 0.00
602 4 0.00
603 1 0.00
605 8 0.00
606 1 0.00
607 1 0.00
608 1 0.00
610 1 0.00
611 1 0.00
612 9 0.00
613 2 0.00
614 3 0.00
615 1 0.00
616 21 0.00
617 1475 0.28
618 1481 0.28
619 1305 0.24
620 4 0.00
621 1 0.00
622 1 0.00
623 3 0.00
625 1 0.00
626 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (602 bp):
GAAGAAGCCACGTGGCAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAAG
TAAATTTCGAGGCTGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
GGGAGTGTTTGAGAAGCCTTGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
ATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTACTGCAACGTGTGGGACCATTCGCTTAT
AAACTAGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
TTATCGCTCTAATCCCACTCACATAGTACCAGTTAAGGAGATTGAGGTTAGGCCAGATCTGACCT
TCGACGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAGAGATAGAAAGTGCTTT
GGCGTAATCACAGTTCA
Found at i:40790479 original size:989 final size:984
Alignment explanation
Indices: 40788568--40790532 Score: 2674
Period size: 989 Copynumber: 2.0 Consensus size: 984
40788558 CTAAAACATG
* *
40788568 TGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
1 TGGGACTAATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
* * * *
40788633 GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCAGTCACAGAGTACTAGTTAGGGAGATTGAGGT
66 GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAGAGTACCAGTTAGGGAGATTGAGGT
* * ** * ** *
40788698 TAGGCCGGATCTTACCTTCGACGAGAAGCCAATGCAGATTTTGTACCGTGGGGTTAAGGTACTGA
131 TAGGCCAGATCTGACCTTAAACGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAA
* * *
40788763 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACTGTTCAGAAGAAGCAACGTGGGAACCCGA
196 GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
* *
40788828 AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAAAATTTTG
261 AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
* * * * * *
40788893 CCAAAGGGGGTAGAGTTGTAGCGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACAAAA
326 ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACAAAA
*
40788958 ATTGCTTGACTGTTTTAATGGCTATGTGATTTAGATGTGTATGGGAGTGTTTGAGAAGCCTGGGT
391 ATTGCTTGACTGCTTTAATGGCTATGTGATTTAGATGTGTATGGGAGTGTTTGAGAAGCCTGGGT
* * *
40789023 TCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAG
456 TCAAGTCCTAGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAG
** * *
40789088 GCGTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCGTTG
521 GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
** * * * * * *
40789153 GGCCTTACCGTGTACTGCAACGTATGGGACTGGGCGCTTATAAACTTGAGTTGCCTCTGAGATTA
586 AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAAATTA
* * * * * *
40789218 GACCAGATTAATGATGTGTTTCACATCACCATGCTAAGGCTTTATCTCTTTGATCCCACTCACAT
651 GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
** * * * *
40789283 AGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCATTGAGTAGATGCCAGTAAAGATTT
716 AGTAAAAGTTGAGAAGATTGAGGTTAGGCTAGATCTGACCATTGAGGAGAAGCCACTAAAGATTT
* * * *
40789348 TAGACCGTGAGGTTAAGGTATTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGTCGTAAT
781 TAGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTCCTTTGGCGTAAT
* * *
40789413 CACAGTTTAGAAGAAGCAACGTAGGAACCCAAAGAGGCGATACGACAGCAATACCCTCATCTTTT
846 CACAGTTCAAAAGAAGCAACGTAGGAACCCAAAGAGGCGATACAACAGCAATACCCTCATCTTTT
* *
40789478 CTAACCTGGTAAATTTTGAGGTCAAAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
911 CTAACCTGGTAAATTTTGAGCTCAAAATTTTACTAAAGGGCGTAGAGTTGTAACGCCCCAAAATT
40789543 TGGGACGTT
976 TGGGACGTT
* * *
40789552 TGGGACTAATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACTAATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
* *
40789617 GTCTCCATGATAAGGTGTTATCCCTCTGATCCCACTCACATAGTACCAGTT-GAGGAGATTGAGG
66 GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAGAGTACCAGTTAG-GGAGATTGAGG
* * *
40789681 TTAGGCCAGATCTGACCTTAAAGGAGAAGCCAATGCGGATTTTGGACCGTAAGGTTAAGTTACTA
130 TTAGGCCAGATCTGACCTTAAACGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTA
* *
40789746 AGGAAGAAATCTATTCCATTAGTCAAAGTGCGTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTA
195 AGAAAGAAATCTATTCCATTAGTCAAA----G-T---GTAATCACAGTTCAGAAGAAGCAACGTA
* *
40789810 GGAACCAGAAGAGGCGATGCGACAGTAATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
252 GGAACCAGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
*
40789875 AAAATTTT-ACTAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
317 AAAATTTTGACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
* ** * *
40789939 TTGA-ATGAAATTGCTTGTTTGCTTTAATGGCTAAT-TGATTTGGGTGTGTATGGGAGTGTTTGA
382 TTGACA-AAAATTGCTTGACTGCTTTAATGGCT-ATGTGATTTAGATGTGTATGGGAGTGTTTGA
* *
40790002 GAA-CCTTGGGTTCAAGTCCTAGCCTTTGTACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
445 GAAGCC-TGGGTTCAAGTCCTAGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
* * **
40790066 ACTGGCACTTAGGCCCTTTATATATTAATACTT-TTTT-TGACACAAAGAGCTTATTTTTCCACG
509 ACTGGCACATAGGCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGC-CATTGGTCCA-G
* * *
40790129 -GGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATTGGACCGATCACTTATTAACTTGAGT
572 TGGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGT
* * * * * *
40790193 TTCCTCTGAAATTAGACTAAATTCATGATGTGCTTCACGTCTCGATACTAAGGATTTATCGCTCT
637 TGCCTCTGAAATTAGACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCT
* * *
40790258 GATCCCACTCATATAGTAAAAGTTGAGAAGATTGAGCTTTGGGC-AGATCTGACC-TTCGAGGAG
702 GATCCCACTCACATAGTAAAAGTTGAGAAGATTGAG-GTTAGGCTAGATCTGACCATT-GAGGAG
** * *
40790321 AAGCCACTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAA
765 AAGCCACTAAAGATTTTAGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAA
* * * * * *
40790386 AGTCCTTTGGCGTAATCACAGTTCAAAAGAAGCCATGTGGGAACCCGAAGAGGCGATGCAACAGT
830 AGTCCTTTGGCGTAATCACAGTTCAAAAGAAGCAACGTAGGAACCCAAAGAGGCGATACAACAGC
* * * * ** *
40790451 AATACCCTCGTCTTTTCTGACTTGGTAAATTTTGAGCTCGAAATTTTGTTAAAGGGCGTATAGTT
895 AATACCCTCATCTTTTCTAACCTGGTAAATTTTGAGCTCAAAATTTTACTAAAGGGCGTAGAGTT
40790516 GTAACGCCCCAAAATTT
960 GTAACGCCCCAAAATTT
40790533 AAGTCTAATT
Statistics
Matches: 850, Mismatches: 115, Indels: 27
0.86 0.12 0.03
Matches are distributed among these distances:
983 1 0.00
984 196 0.23
988 16 0.02
989 350 0.41
990 193 0.23
991 87 0.10
992 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (984 bp):
TGGGACTAATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
GTCTCCATGATAAGGCGTTATCCCTCTGATCCCACTCACAGAGTACCAGTTAGGGAGATTGAGGT
TAGGCCAGATCTGACCTTAAACGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAA
GAAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGA
AGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTG
ACAAACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGACAAAA
ATTGCTTGACTGCTTTAATGGCTATGTGATTTAGATGTGTATGGGAGTGTTTGAGAAGCCTGGGT
TCAAGTCCTAGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAG
GCCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTA
AACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAAATTA
GACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACAT
AGTAAAAGTTGAGAAGATTGAGGTTAGGCTAGATCTGACCATTGAGGAGAAGCCACTAAAGATTT
TAGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTCCTTTGGCGTAAT
CACAGTTCAAAAGAAGCAACGTAGGAACCCAAAGAGGCGATACAACAGCAATACCCTCATCTTTT
CTAACCTGGTAAATTTTGAGCTCAAAATTTTACTAAAGGGCGTAGAGTTGTAACGCCCCAAAATT
TGGGACGTT
Found at i:40791441 original size:616 final size:616
Alignment explanation
Indices: 40789564--40792456 Score: 4398
Period size: 614 Copynumber: 4.7 Consensus size: 616
40789554 GGACTAATCG
* * * *
40789564 CTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCATGTCTCCATGA-T
1 CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCAT-ACT
* * * * * *
40789628 AAGG-TGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGAT
65 AAGGAT-TTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGAT
* * * * *
40789692 CTGACCTTAAAGGAGAAGCCAATGCGGATTTTGGACCGTAAGGTTAAGTTACT-AAGGAAGAAAT
129 CTGACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAA-GAAGAAAT
* * *
40789756 CTATTCCATTAGTCAAAGTGCGTTGGCGTAATCA-AGTTCAGAAGAAGCCACGTAGGAACCAGAA
193 CTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAA
* * * * **
40789820 GAGGCGATGCGACAGTAATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTAC
258 GAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTTGAAATTTT-C
* * * **
40789885 -T-AACGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTTTGAATGAA
322 TTAAAGGGGGTACAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAA
*
40789948 ATTGCTTGTTTGCTTTAATGGCTAATTGATTTGGGTGTGTATGGGAGTGTTTGAGAA-CCTTGGG
387 ATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCC-TGGG
* * *
40790012 TTCAAGTCCTAGCCTTTGTACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTA
451 TTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTA
* * * *
40790077 GGCCCTTTATATATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACGGGTAGGTTCATTA
516 GGCCTTTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTG
* *
40790142 AACCTTACCGTGTACTGAAACATATTGGACCGATCA
581 AACCTTACCGTGTACTGAAACATGTGGGACCGATCA
* * *
40790178 CTTATTAACTTGAGTTTCCTCTGAAATTAGACTAAATTCATGATGTGCTTCACGTCTCGATACTA
1 CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
* *
40790243 AGGATTTATCGCTCTGATCCCACTCATATAGTAAAAGTTGAGAAGATTGAGCTTTGGG-CAGATC
66 AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGC-TTGGGCCAGATC
* * *
40790307 TGACCTTCGAGGAGAAGCCACTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCT
130 TGACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCT
* * *
40790372 ATTCCATTAGTCAAAGTCCTTTGGCGTAATCACAGTTCAAAAGAAGCCATGTGGGAACCCGAAGA
195 ATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGA
* * * * *
40790437 GGCGATGCAACAGTAATACCCTCGTCTTTTCTGACTTGGTAAATTTTGAGCTCGAAATTTTGTTA
260 GGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTTGAAATTTTCTTA
* * *
40790502 AAGGGCGTATAGTTGTAACGCCCCAAAATTTAAG--TCTAATTTTTGCATGTTTTGAAGAAAATT
325 AAGGGGGTACAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATT
*
40790565 GCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATTGGAGTGTTTGAGAAGCCTGGGTTCA
390 GCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCA
* * *
40790630 AGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTGGCACTTGGGCC
455 AGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCC
40790695 TTTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACC
520 TTTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACC
40790760 TTACCGTGTACTGAAACATGTGGGACCGATCA
585 TTACCGTGTACTGAAACATGTGGGACCGATCA
*
40790792 CTTATTAAGTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
1 CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
40790857 AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCT
66 AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCT
40790922 GACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCTA
131 GACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCTA
*
40790987 TTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGACGCCACGTGGGAACCCGAAGAG
196 TTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAG
* * **
40791052 GCGATGTGAGAGTAATACCCTCGTCTTTTCTGACCTGGTATTTTTTGAGGTTGAAATTTTCTTAA
261 GCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTTGAAATTTTCTTAA
* *
40791117 AGGGGGTACAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTT
326 AGGGGGTACAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTG
* *
40791182 CTTCTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAA
391 CTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAA
* * *
40791247 GTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTGGCACTTGGGCCT
456 GTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCT
40791312 TTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCT
521 TTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCT
40791377 TACCGTGTACTGAAACATGTGGGACCGATCA
586 TACCGTGTACTGAAACATGTGGGACCGATCA
* *
40791408 CTTATTAAGTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATGCTA
1 CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
40791473 AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCT
66 AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCT
40791538 GACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCTA
131 GACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCTA
*
40791603 TTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGACGCCACGTGGGAACCCGAAGAG
196 TTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAG
* * **
40791668 GCGATGTGAGAGTAATACCCTCGTCTTTTCTGACCTGGTATTTTTTTGAGGTTGAAATTTTCTTA
261 GCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTA-AATTTTGAGGTTGAAATTTTCTTA
*
40791733 AAGGGGGTACAGTTGTAACGCCCTAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATT
325 AAGGGGGTACAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATT
* * * *
40791798 TCTTCTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGGTTGAGAAGCCTGGGTTCA
390 GCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCA
*
40791863 AGTCTTGGCCTTTGCACAATTTTTAGTTTGTCTCTTAAATGAATCTGGACACTGGCACTTAGGCC
455 AGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCC
*
40791928 TTTTATTTATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAA
520 TTTTATCTATTAATACTT-TTTT-TGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAA
*
40791993 CCTTACCGTGTACTGAAACATGTGGGACCGATCG
583 CCTTACCGTGTACTGAAACATGTGGGACCGATCA
* * *
40792027 CTTATAAACTTGAGTTTCCTCTGAAATTCGACCAGATTCATGATGTGCTTCACGTCTCCATGCTA
1 CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
* * * ** * * * * * *
40792092 A-GACGTTAACGCTCTGATCACGGTC-GCATAGTA-ACTGTTGA-AGAGATTGAGGTTAGACAAA
66 AGGA-TTTATCGCTCTGATCCCACTCAG-ATAGTACA-AGTTGAGA-AGATTGAGCTTGGGCCAG
* * *
40792153 ATCTGACCTTCAAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAACG-TACTGAGGTAGAA
127 ATCTGACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAA-GTTACTGAAGAAGAA
* * *
40792217 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGCCACGTGGGAACCTG
191 ATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCG
* * * * * *
40792282 ATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGA-CTAGGTAAATTTCGAGGCTGAAATTT
256 AAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCT-GGTAAATTTTGAGGTTGAAATTT
* * * * * *
40792346 TCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACA-TATCTAATGTTTGCATGTTTAGACA
320 TCTTAAAGGGGGTACAGTTGTAACGCCCCAAAATTTA-AGTCTCTAATTTTTGCATGTTTTGAAA
* * *
40792410 CAAATTGCTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
384 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGG
40792457 TAGTTTTTTC
Statistics
Matches: 2124, Mismatches: 134, Indels: 38
0.93 0.06 0.02
Matches are distributed among these distances:
613 6 0.00
614 756 0.36
615 93 0.04
616 581 0.27
617 231 0.11
618 122 0.06
619 334 0.16
620 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (616 bp):
CTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTA
AGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCT
GACCTTCAAGGAGAAGCCAGTGCAGATTTTGAACCGTGAGGTTAAGTTACTGAAGAAGAAATCTA
TTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAG
GCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTTGAAATTTTCTTAA
AGGGGGTACAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTTTTGAAAAAAATTG
CTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAA
GTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCT
TTTATCTATTAATACTTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCT
TACCGTGTACTGAAACATGTGGGACCGATCA
Found at i:40794497 original size:988 final size:982
Alignment explanation
Indices: 40792585--40794546 Score: 2643
Period size: 988 Copynumber: 2.0 Consensus size: 982
40792575 CTAAAACATG
*
40792585 TGGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
* * * * *
40792650 GTCTCCATGCTAAGGCATTATCGCTCTGATCCAGTCACAGAGTACTAGTTAGGAAGATTGAGGTT
66 GTCTCCATGATAAGGCATTATCCCTCTGATCCACTCACAGAGTACCAGTTAAGAAGATTGAGGTT
* * * * * * ** *
40792715 AGGCCGGATCTTACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGAG
131 AGGCCAGATCTGACCCTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAAG
* * * *
40792780 AAAGAAATCTATTCCATTAGTCAAAGTGTAATCACTGTTCAGAAGAAGCAATGTGGGAACCCGAA
196 AAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGAA
* * *
40792845 GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAAAATTTTGC
261 GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTGA
* * ** * * *
40792910 CAAATGGGGTAGAGTTGTAGCGTCCCAAAATTTAAGTCTCTCATTTTTGCATGTTTTGACACAAA
326 CAAACGGGGTAGAGTTGTAACCCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTCTGACACAAA
* *
40792975 TTGCTTGATTGTTTTAATGGCTATGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGTT
391 TTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGTT
* * *
40793040 CATGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATTAATCTGGACACTGGCACATAGG
456 CAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAGG
** * **
40793105 CGTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCGTTGG
521 CCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTAA
* * * * * *
40793170 GCCTTATCGTGTACTGCAACGTGTGGGACCGAGCGCTTATAAACTTGAGTTGCCTCTGAGATTAG
586 ACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAGATTAG
* * * * * *
40793235 ACCAGATTAATGATGTGTTTCACATCACCATGCTAAGGCTTTATCTCTTTGATCCCACTCACATA
651 ACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACATA
* * ** * * *
40793300 GTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCATTGAGTAGATGCCAGTAAAGATTTT
716 GTACAAGTTGAGAAGATTGACCTTAGGCAAGATCTGACCATTGAGGAGAAGCCAGTAAAGATTTT
* * * * *
40793365 GGACCGTGAGGTTAAGGTATTGAGGAAGGAATCTATTCCATTAGTCAAAGTTCTTTGTCGTAATC
781 GGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATC
40793430 ACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTCC
846 ACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTCC
*
40793495 TGACCTGGTAAATTTCGAGGTCAAAATTTTACTAAAGGGGGTAGACTTCTAACGCCCCAAAATTT
911 TGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAA-GGGGTAGACTTCTAACGCCCCAAAATTT
40793560 GGGATGTT
975 GGGATGTT
* * * *
40793568 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAGTTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
** *
40793633 GTCTCCATGATAAGGTGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAAG-AGATTGAGG
66 GTCTCCATGATAAGGCATTATCCCTCTGAT-CCACTCACAGAGTACCAGTT-AAGAAGATTGAGG
*
40793697 TTAGGCCAGATCTGACCCTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGTTACTA
129 TTAGGCCAGATCTGACCCTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTA
* *
40793762 AGGAAGAAATCTATTCCATTAGTCAAAGTGCTCTGGCGTAATCA-AGTTCAGAAGAAGCCACGTA
194 AGAAAGAAATCTATTCCATTAGTCAAA--G---T---GTAATCACAGTTCAGAAGAAGCAACGTA
** *
40793826 GGAACCAGAAGAGGCGATGCGACAGTTATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
251 GGAACCAGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTC
*
40793891 AAAATTTT-ACTAACGGGGTAGAGTTGTAACCCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
316 AAAATTTTGACAAACGGGGTAGAGTTGTAACCCCCCAAAATTTAAGTCTCTAATTTTCGCATGTT
* * *
40793955 CTGA-AGGAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGT-CTATGGGAGTGTTTGA
381 CTGACA-CAAATTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGC-ATGGGAGTGTTTGA
*
40794018 GAA-CCTTGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
444 GAAGCC-TGGGTTCAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
* ** ** **
40794082 ACTGGCACTTAGGCCCTTTATATATTAATACTT-TTTT-TTTCACAAAGAGATTATTTTTCCACG
508 ACTGGCACATAGGCCCTTTATATATTAATACTTGTTTTATGACACAAAGAG-CCATTGGTCCA-G
* * *
40794145 -GGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATTGGACCGATCACTTATTAACTTGAGT
571 TGGTAGGTTCATTAAACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGT
* * * * *
40794209 TTCCTCTGA-ATTAGACCAAATTCATGATGTGCTTCACGTCTCGATACTAAGGATTTATCGCTCT
636 TGCCTCTGAGATTAGACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCT
* *
40794273 GATCCCACTCAGATAGTACAAGTTGAGAAGATTGACCTTTGGCAAGATCTGACC-TTCGAGGAGA
701 GATCCCACTCACATAGTACAAGTTGAGAAGATTGACCTTAGGCAAGATCTGACCATT-GAGGAGA
** * *
40794337 AGCCAGTGCAGATTTTGGATCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAA
765 AGCCAGTAAAGATTTTGGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAA
* * *
40794402 GTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGTA
830 GTGCTTTGGCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATGCGACAGCA
** * ** * * * *
40794467 ATACCCT-AGTCTTTTTTGACCTGTTAAATTTTTAGCTCGAAATTTTATTAAAGGGGTAGAGTTG
895 ATACCCTCA-TCTTTCCTGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAAGGGGTAGACTTC
40794531 TAACGCCCCAAAATTT
959 TAACGCCCCAAAATTT
40794547 AAGTCTCTAA
Statistics
Matches: 847, Mismatches: 115, Indels: 30
0.85 0.12 0.03
Matches are distributed among these distances:
983 86 0.10
984 107 0.13
985 2 0.00
986 1 0.00
987 29 0.03
988 267 0.32
989 76 0.09
990 189 0.22
991 83 0.10
992 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (982 bp):
TGGGACTGATCGCATATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTATTTCAC
GTCTCCATGATAAGGCATTATCCCTCTGATCCACTCACAGAGTACCAGTTAAGAAGATTGAGGTT
AGGCCAGATCTGACCCTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGGTACTAAG
AAAGAAATCTATTCCATTAGTCAAAGTGTAATCACAGTTCAGAAGAAGCAACGTAGGAACCAGAA
GAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCAAAATTTTGA
CAAACGGGGTAGAGTTGTAACCCCCCAAAATTTAAGTCTCTAATTTTCGCATGTTCTGACACAAA
TTGCTTGATTGCTTTAATGGCTAAGTGATTTAGGTGTGCATGGGAGTGTTTGAGAAGCCTGGGTT
CAAGTCCTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACATAGG
CCCTTTATATATTAATACTTGTTTTATGACACAAAGAGCCATTGGTCCAGTGGTAGGTTCATTAA
ACCTTACCGTGTACTGAAACATATGGGACCGAGCACTTATAAACTTGAGTTGCCTCTGAGATTAG
ACCAAATTAATGATGTGCTTCACATCACCATACTAAGGATTTATCGCTCTGATCCCACTCACATA
GTACAAGTTGAGAAGATTGACCTTAGGCAAGATCTGACCATTGAGGAGAAGCCAGTAAAGATTTT
GGACCGTGAGGTTAAGGTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATC
ACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATGCGACAGCAATACCCTCATCTTTCC
TGACCTGGTAAATTTCGAGCTCAAAATTTTACTAAAGGGGTAGACTTCTAACGCCCCAAAATTTG
GGATGTT
Found at i:40795423 original size:618 final size:618
Alignment explanation
Indices: 40793568--40795857 Score: 3291
Period size: 618 Copynumber: 3.7 Consensus size: 618
40793558 TTGGGATGTT
* * * * *
40793568 TGGGACTGATCGCTTATAAACTTGAGTTGCCTCTGAAGTTAGACCAGATTCATGATGTGTTTCAT
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* * * * *
40793633 GTCTCCATGA-TAAGG-TGTTATCCCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAG
66 GTCTCCAT-ACTAAGGAT-TTAACGCTCTGATCCCACTCAGATAGTACAAGTTGAAAAGATTGAG
* * * * *
40793696 GTTAGGCCAGATCTGACCCTAGAGGAGAAGCCAATGCAGATTTTGGACCGTAAGGTTAAGTTACT
129 CTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACT
*
40793761 -AAGGAAGAAATCTATTCCATTAGTCAAAGTGCTCTGGCGTAATCA-AGTTCAGAAGAAGCCACG
194 GAA-GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACG
* * * *
40793824 TAGGAACCAGAAGAGGCGATGCGACAGTTATACTCTCATCTTTTCTGACCTGGTAAATTTCGAGC
258 TGGGAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGC
* * * * *
40793889 TCAAAATTTTACT-AACGGGGTAGAGTTGTAACCCCCCAAAATTTAAGTCTCTAATTTTCGCATG
323 TCGAAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATG
* ** *
40793953 TTCTGAAGGAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTCTATGGGAGTGTTTGA
388 TTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGA
* *
40794018 GAA-CCTTGGGTTCAAGTCCTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
453 GAAGCC-GGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
* ** * *
40794082 ACTGGCACTTAGGCCCTTTATATATTAATACTT-TTTT-TTTCACAAAGAGATTATTTTTCCACG
517 ACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACT
*
40794145 GGTAGGTTCATTAAACCTTACCGTGTACTGAAACATA
582 GGTAGGTTCATTAAACCTTACCGTGTACTGAAACATG
* * * *
40794182 TTGGACCGATCACTTATTAACTTGAGTTTCCTCTG-AATTAGACCAAATTCATGATGTGCTTCAC
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* * * *
40794246 GTCTCGATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGACCT
66 GTCTCCATACTAAGGATTTAACGCTCTGATCCCACTCAGATAGTACAAGTTGAAAAGATTGAGCT
* * *
40794311 TTGGCAAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGATCGTGAGGTTAAGTTACTGA
131 TAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
40794376 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * **
40794441 GAACCCGAAGAGGCGATGCGACAGTAATACCCT-AGTCTTTTTTGACCTGTTAAATTTTTAGCTC
261 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCA-TCTTTTCTGACCTGGTAAATTTCGAGCTC
* *
40794505 GAAATTTTATTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGCATGTT
325 GAAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATGTT
* * * * * *
40794569 TCGAAGAAAATTGTTTATTTGCTTTAATGGCTATGTGATTTGGGTGTGTATGGAAGTGTTTGAGA
390 TTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
*
40794634 AGCCGGGGTTTAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
455 AGCCGGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
*
40794699 GGTACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGT
520 GGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGT
*
40794764 AGGTTCATTAAACCTTACCGTGTACTGAAACAAG
585 AGGTTCATTAAACCTTACCGTGTACTGAAACATG
* * *
40794798 TGGGACCGATCGCTTATAAACTTGAGCTTCCTCTAAAATTAGACCAGATTCATGATGTGTTTCAC
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
*
40794863 GTCTCCATACTAAGGATTTAACGCTCTGGTCCCACTCAGATAGTACAAGTTGAAAAGATTGAGCT
66 GTCTCCATACTAAGGATTTAACGCTCTGATCCCACTCAGATAGTACAAGTTGAAAAGATTGAGCT
* * * *
40794928 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTCGACCATGAGGTGAAGTTACTGA
131 TAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* ** *
40794993 AGAAGAAATCTATTCCATTCGAAAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACATGG
196 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * * *
40795058 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTCTTCTGACCTGGTAAATTTTGAGGTCG
261 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCG
** *
40795123 AAATTTTGTTAAAGGGGGTGGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATGTTT
326 AAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATGTTT
*
40795188 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAA
391 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* *
40795253 GCCGGGGTTCAAGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAATTTGGACACTG
456 GCCGGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
40795318 GCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTA
521 GCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTA
* *
40795383 GGTTCATTGAACCTTACCATGTACTGAAACATG
586 GGTTCATTAAACCTTACCGTGTACTGAAACATG
*
40795416 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTTGACCAGATTCATGATGTGCTTCAC
1 TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
* * * ** * *
40795481 GTCTCCATGCTAA-GACGTTAACGCTCTGATCACGGTC-GCATAGTA-ACTGTTGAAGAGATTGA
66 GTCTCCATACTAAGGA-TTTAACGCTCTGATCCCACTCAG-ATAGTACA-AGTTGAAAAGATTGA
* * * * *
40795543 GGTTAGACCAAATTTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAA-TGTA
128 GCTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGT-TA
* * * * *
40795607 CTGAGGTAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCATAATAACAGTTGAGAAGAAGCCAC
192 CTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCAC
* * * *
40795672 GTGGGAACCTGATGAGGCGATACGACAGTAATAGCCTCATCTTTTCTGA-CTAGGTAAATTTCGA
257 GTGGGAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTCGA
* * * * *
40795736 GGCT-GAAATTTTCCTAAAGGGGGTAAAGTTGTAACGCCCCAAAATTTACATATCTAATGTTTGC
321 -GCTCGAAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGC
* * * * *
40795800 ATGTTTAGACACAAATTGCTTGTTTTCATTAATGGCTAAGTGATTTGGGTGTGTATGG
385 ATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGG
40795858 TAGTTTTTTC
Statistics
Matches: 1506, Mismatches: 152, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
612 1 0.00
613 176 0.12
614 309 0.21
615 8 0.01
616 87 0.06
617 284 0.19
618 639 0.42
619 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (618 bp):
TGGGACCGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCAC
GTCTCCATACTAAGGATTTAACGCTCTGATCCCACTCAGATAGTACAAGTTGAAAAGATTGAGCT
TAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
GAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGCTCG
AAATTTTACTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTTTGCATGTTT
TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
GCCGGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
GCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCTTATTTTTCCACTGGTA
GGTTCATTAAACCTTACCGTGTACTGAAACATG
Found at i:40796867 original size:566 final size:560
Alignment explanation
Indices: 40795380--40796909 Score: 1643
Period size: 561 Copynumber: 2.7 Consensus size: 560
40795370 TTTTCCACTG
* ** *
40795380 GTAGGTTCATTGAACCTTACCATGTACTGAAACATGTGGGACCGATCGCTTATAAACTTGAGTTT
1 GTAGGTCCATTGGGCCTTACCGTGTACTGAAACATGTGGGACCGATCGCTTATAAACTTGAGTTT
* * * *
40795445 CCTCTGAAATTTGACCAGATTCATGATGTGCTTCACGTCTCCATGCTAAGACGTTAACGCTCTGA
66 CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
* * * * * * *
40795510 TCACGGTCGCATAGTAACT-GTTGAAGAGATTGAGGTTAGACCAAATTTGACCTTCGAGGAGAAG
131 TCCCAGTCACATAGT-ACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGA-GAGAAG
* *
40795574 CCAGTGCAGATTTTGTACCGTGAGGTTAATGTACTGAGGTAGAAATCTATTCCATTAGTCAAAGT
194 CCAGTGCAGATTTTGTACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
* * * * ** * *
40795639 GCTTTGGCATAATAACAGTTGAGAAGAAGCCACGTGGGAACCTGATGAGGCGATACGACAGTAAT
259 GCTTT-GCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAAT
* * *
40795704 AGCCTCATCTTTTCTGA-CTAGGTAAATTTCGAGG-CTGAAATTTTCCTAAAGGGGGTAAAGTTG
323 ACCCTCATCTTTTCTGACCT-GGTAAATTTCGAGGTC-AAAATTTTCC-AAA-GGGGTAGAGTTG
40795767 TAACGCCCCAAAATTTACATATCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTTCATTAA
384 TAACGCCCCAAAATTTACATATCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTT-ATTAA
* * * * ** **
40795832 TGGCTAAGTGATTTGGGTGTGTATGGTAGTTTTTTCTTAAACGAATCTGGACATTGGCACCTAGG
448 TGGCTAAGTGATTTAGGTGTGCATGGGAGTTGTTTCAGAAACGAATCAAGACATTGG-ACCTAGG
* ** * *
40795897 CCGTTTATATATTACTACTTGTTTAATGACACAAAGAGCCTATTAGTCCA
512 CCATTTATATATTACTACTTAATTAATGACAC-AAGAGCCTACTAGGCCA
* * * * * *
40795947 GTGGTAGGTTCATTGGGGCTTACCGTGTACTAAAACATGTGGGGCTGATCGCATATAAACTTGAG
1 ---GTAGGTCCATTGGGCCTTACCGTGTACTGAAACATGTGGGACCGATCGCTTATAAACTTGAG
*
40796012 TTTCCTCTGAAATTAGACCAGATTCATGATGTATTTCACGTCTCCATGCTAAGGCGTTATCGCTC
63 TTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTC
* * * *
40796077 TGAT-CCAGTCACAGAGTACTAGTTGGGGAGATTGAGGTTAGGCCGGATCTTACCTTCGACGAGA
128 TGATCCCAGTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGA-GAGA
* *
40796141 AGCCAGTGCAGATTTTGTACCGTGGGGTTAAGGTACTGAGAAAGAAATCTATTCCATTAGTCAAA
192 AGCCAGTGCAGATTTTGTACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAA
* * * *
40796206 --G---T--GTAATCACTGTTCAGAAGAAGCAACGTGGGAACCCAAAGGGGCGATGCGACATCAA
257 GTGCTTTGCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAA
*
40796264 TACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAAAATTTTGCCAAATGGGGTAGAGTTGT
322 TACCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTT-CCAAA-GGGGTAGAGTTGT
* * * * * *
40796329 AGCGTCCCAAAATTTA-AGTCTCTCATTTTTGCATGTTTTGACACAAATTGCTTGATTGTT-TTA
385 AACGCCCCAAAATTTACA-TATCTAATGTTTGCATGTTTAGACACAAATTGCTTG-TT-TTATTA
* * * ** *
40796392 ATGGCTATGTGATTTAGGTGTGCATGGGAG-TGTTTGAGAAGCCTGGGTTCAAG-TATTGG-CCT
447 ATGGCTAAGTGATTTAGGTGTGCATGGGAGTTGTTTCAGAA-AC--GAATCAAGACATTGGACCT
* * * * *
40796454 TGGCACAATTTTTAGTTTTTCT-CTTAAATTAATCTGGACAC-TG-GCAC-ACT-GGCACA
509 AGGC-C-ATTTATA-TATTACTACTT-AATTAA--T-GACACAAGAGC-CTACTAGGC-CA
* * * * *
40796510 -TA-G-CCGTTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGAGCGCTTATAAACTTGAGTTG
1 GTAGGTCCATTGGGCCTTACCGTGTACTGAAACATGTGGGACCGATCGCTTATAAACTTGAGTTT
* * * * * * * *
40796572 CCTCTGAGATTAGACCAGATTAATGATGTGTTTGACATCACCATGCTAAGGCTTTATCTCTTTGA
66 CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
* * * *
40796637 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTGGGCTAGATCTGACCATT-GAGTAGATG
131 TCCCAGTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC-TTCGAG-AGAAG
*** * *
40796701 CCAGCAAAGATTTTGGACCGTGAGGTTAAGGTATTGAGGAAGAAATCTATTCCATTAGTCAAAGT
194 CCAGTGCAGATTTTGTACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
* *
40796766 GCTTTGCCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGATAGCAAC
259 GCTTTG-CGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAAT
* *
40796831 ACCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTTACTAAAGGGCGTAGAGTTATA
323 ACCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTT-CCAAAGGG-GTAGAGTTGTA
40796896 ACGCCCCAAAATTT
386 ACGCCCCAAAATTT
40796910 GGGACGTTTG
Statistics
Matches: 806, Mismatches: 123, Indels: 66
0.81 0.12 0.07
Matches are distributed among these distances:
557 106 0.13
558 106 0.13
559 4 0.00
560 14 0.02
561 173 0.21
562 22 0.03
563 22 0.03
564 3 0.00
565 4 0.00
566 125 0.16
567 1 0.00
568 3 0.00
569 105 0.13
570 118 0.15
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (560 bp):
GTAGGTCCATTGGGCCTTACCGTGTACTGAAACATGTGGGACCGATCGCTTATAAACTTGAGTTT
CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGA
TCCCAGTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGAGAAGCC
AGTGCAGATTTTGTACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGC
TTTGCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCAAAGAGGCGATACGACAGCAATACC
CTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTTCCAAAGGGGTAGAGTTGTAACGCC
CCAAAATTTACATATCTAATGTTTGCATGTTTAGACACAAATTGCTTGTTTTATTAATGGCTAAG
TGATTTAGGTGTGCATGGGAGTTGTTTCAGAAACGAATCAAGACATTGGACCTAGGCCATTTATA
TATTACTACTTAATTAATGACACAAGAGCCTACTAGGCCA
Found at i:40800182 original size:616 final size:618
Alignment explanation
Indices: 40798508--40805494 Score: 11794
Period size: 618 Copynumber: 11.3 Consensus size: 618
40798498 GTAACGCCCT
*
40798508 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGACTTGGGTGTGTATGGGAGTGTTTGAGAAG-CTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* *
40798572 GGTTCAAGTCTTGGCCTTTGAACAATTTTTAGTTTGTCTCTTAAATGAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
* * *
40798637 TAGGCCTTTTATTTATTAATACTTGTTTTTGGACACAAAGAGCTTATTTTTCCACGGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* *
40798702 ATTGAACCATACCGTGTACTGAAATATGT-GGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
*
40798766 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCACTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
*
40798831 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGTGAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
*
40798896 ATTTTGGATCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * *
40798961 GAATCACAGTTCAAAAGAAGCCACGTGGGAACCCAAAGAGGCGATGCGATAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * * * *
40799026 TTTTCTGACCTTGTAAATTTTGAGGTCAAAATTTTGTTAAATGGGGTA-AATTGCAACGCCCCAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40799090 AATTTAAGTCTCTAATTTTTGCATGTTTAGAAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTG-AAA
*
40799124 AAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* * * *
40799189 GGTTCAAGTCTTGGCCTTTGCACAAATTTTCGTTTTTCTCTTAAATGAATCTTGACACTGGCAAT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
* * *
40799254 TAGGTCTTCTATATATTAATACTTGTTTTTTTACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* * *
40799319 GTTGAACCTTGCCGTGTACTGAAACATGTGGGACCGATCAATTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* * *
40799384 ATTAGGCCAGATTCATGATGTGATTCACGTCCCCATACTAAGGATTTATCGCTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* * *
40799449 AAATAGTACAAGTTGAAAAGATTGAGCTTGGGCCAGATCTGACCTTCAAGGAGAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
40799514 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * *
40799579 TAATCACAGTTCAGTAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGTAATAACCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
*
40799644 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGCGTAGAGTTGTAACGCCCCAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
* * *
40799709 AATTTAAGTCTATAAATTTTGCATGTTTTGAAG
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
* * *
40799742 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTCGGTGGGTGTGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* * * *
40799807 GGTTCAAGTCTTGGCCTTTGCAGAATTTTTAGTTTTTCTCTTAAATGAACCTTGACTCTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
* *
40799872 TGGGCCTTTTATCTATTAATAC-T-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
*
40799935 ATTGAACCTTACCGTGTACTGAAACATGTGGGATCGATCACTTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
40800000 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* * *
40800065 AGATAATACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCAAGGAGAAGCTAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
* *
40800130 ATTTTGGACCGTGAGGTTAAGTTATTGAAGAAGAAATCTATTCCATTAGTCAAAGTACTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
40800195 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * *
40800260 TTTTCTGACCTTGTAAATTTTGAGGT-GAAAATTTTGTTAAATGGGGTAGAGTTGCAACGCCCCA
521 TTTTCTGACCTGGTAAATTTTGAGGTCG-AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCA
*
40800324 AAATTTAAGTCTCTAATTTTTGCATGTTTAGAAAA
585 AAATTTAAGTCTCTAATTTTTGCATGTTTTG-AAA
*
40800359 AAAATTGCTTGTTTGCTTAAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* *
40800424 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTTGACACTGGCAAT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
* * *
40800489 TAGGTCTTCTATATATTAATACTTGTTTTTTTACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* *
40800554 GTTGAACCTTGCCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* * *
40800619 ATTAGGCCAGATTCATGATGTGCTTCACGTCCCCATACTAAGGATTTATCACTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* *
40800684 AGATAGTACAAGTTGACAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAGGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
*
40800749 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCTATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * * * *
40800814 TAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGGGATGCGACAGTAATACCTTCGCC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * * *
40800879 TTTTTTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGCGTAGAGCTGTAATGCCCCAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
* * *
40800944 AATTTAAGTCTATAAATTTTGCATGTTTTGAAG
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
* *
40800977 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTCGGTGTGTGTGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* *
40801042 GGTTCAAGTCTT-GCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACTCTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
40801106 TAGGCCTTTTATATATTAATAC-T-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* * *
40801169 ATTGAACCTTACCATGTACTAAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCTTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* * *
40801234 ATTAGACCATATTCATGATGTGCTTCACGTCTCCATACAAAGGATTTATCACTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* *
40801299 AGATAGTACAAGTTGAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGGACAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
* *
40801364 ATTTTGTATCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
40801429 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * * *
40801494 TTTTCTGACCTGGTAAATTTTGAGCTCGAAATTTTATTAAAGGGAGTAGAGTTGTAACGCCCTAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40801559 AATTTAAGTCTATAATTTTTGCATGTTTTGAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
* *
40801592 AAAATTGCTTGTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTT
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
*
40801657 GGTTCAAGTCTTGGCCTTTGCACAATTTTTACTTTTTCTCTTAAATGAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
40801722 TAGGCCTTTTATATATTAATAC-T-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* *
40801785 ATTGAACCTTACCATGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCTTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
*
40801850 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACAAAGGATTTATCGCTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* * *
40801915 AGATAGTACAAGTTGAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGGACAAGCCAGTACAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
*
40801980 ATTTTGGATCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
*
40802045 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGAGAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * * *
40802110 TTTTCTGACCTGGCAAATTTTGAGGTCAAAATTTTGTTAATGGGGGTAGAGTTGTAACGCCCTAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
* *
40802175 AACTTAAGTCTCTAATTTTTGGATGTTTTGAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
40802208 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
40802273 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
*
40802338 TAGGCCTTTTATATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* *
40802403 ATTGAACCCTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTAAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* *
40802468 ATTAGACCAGATTCATAATGTGCTTCACATCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* *
40802533 AGATAGTACAAGTTGAGAAGATTGAGCTTTGGCCAGATCTGACCTTCGAGGAGAAGCCAGCGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
* **
40802598 ATTTTGGTCAATGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * *
40802663 TAATCATAGTACAGAAGAAGCCACGTGGGAACCTGAAGAGGCGATGCGATAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * *
40802728 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAAAGTTGTAACACCCCAT
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40802793 AATTTAAGTCTCTAATTTTTTCATGTTTTGAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
*
40802826 AAAATTGTTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* * *
40802891 GGTTCAAGCCTTGGCCTTTGCACAATTTTTAATTTTTCTCTTAAATGAATCTGGACACTGGCACC
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
*
40802956 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTAGTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
** ** *
40803021 ATTGAACCTTACTATGTACTGAAACATGTGGGACATATCACTTATTACCTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* *
40803086 ATTTGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGATCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
*
40803151 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATATGACCTTCGAGGAGAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
* *
40803216 ATTTTGGACCGTGAGGTGAAGTTACTGAAGATGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
*
40803281 TAATCACAGTTCAAAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * *
40803346 TTTTCTGACCTGGTAATTTTTTAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCCAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40803411 AATATAAGTCTCTAATTTTTGCATGTTTTGAAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTG-AAA
* *
40803445 AAAATTGCTAGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGATAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
** * * *
40803510 GGTTCAAGTCTTGGCCTTTGCGTAATTTTTAGTTTTTCTCTTAAATGAATTTAGACACTGGCAAT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
40803575 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
40803640 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* * *
40803705 ATTAGACCAGATTCATGATGTGCTTCACGTCCCCATACTAATGATTTATCACTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
*
40803770 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
*
40803835 ATTTTGGACCGTGAGGTTAAGTTACAGAAGAAGAAATCTATT-CATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * * *
40803899 TAATCATAGTTCAGAAGAAGCCACGTGCG-ACCCCAAGAGGCGATGCGAGAGTAATACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
*
40803963 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCTAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40804028 AATTTAAGTCTCTAATTTTTCCATGTTTTGAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
* *
40804061 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATCTGGGTTTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* *
40804126 GGTTCAAGTCTTGGCCTTGGCACAATTTTTACTTTTTCTCTTAAATGAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
* *
40804191 TAGGCCTTTTATATATTAATACTTCTTTTTTGACACAAAGAGCTTATTTTTCCACTTGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
* *
40804256 ATTGAACCTTTCCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTAAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
* *
40804321 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCACTCTGATCCCACGC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
* * * *
40804386 AGATAGTACAAGTTGAAAAGATTGAGCTTTGGCCAGCTCTGACCTTCGAGGACAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
*
40804451 ATTTTGGACCGTGTGGTTAA-TTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * * *
40804515 TAATCACAGTTCAGAAGAAGCCACGTGGCAACCCGAAGAGGCGATGTGAGAGTACTACCCTCGTC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
** *
40804580 TTTTCTGACCTGGTATTTTTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCAA
521 TTTTCTGACCTGGTA-AATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCA
* *
40804645 AAATTTAAGTCTCTAATTTTTCCAGGTTTTGAAA
585 AAATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
*
40804679 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
*
40804744 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTGTCTCTTAAATGAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
*
40804809 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTAGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
40804874 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
196 ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
*
40804939 ATTAGACCAGATTCATGATGTGCTTCACGTCCCCATACTAAGGATTTATCGCTCTGATCCCACTC
261 ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
*
40805004 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAAATCTGACCTTCGAGGAGAAGCCAGTGCAG
326 AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
* * *
40805069 ATTTTAGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTTCATTAGTCAAAGTGATTTGGCG
391 ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
* * *
40805134 TAATCACAGTTCAGAAGAAGCCACGTGGG-ACCCAAAGAGGCGATGCGAGAGTAATACCCTCGCC
456 TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
* * * *
40805198 TTTTATGACCTGATAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCTAA
521 TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
*
40805263 AATTTAAGTCTCTAATTTTTCCATGTTTTGAAA
586 AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
* *
40805296 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATCTGGGTGTGTATGAGAGTGTTTGAGAAGCCTG
1 AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
* *
40805361 GGTTCAAGTCTTGTCCTTTGCACAATTTTTAGTTTTTCTCTTAAATAAATCTGGACACTGGCACT
66 GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
40805426 TAGGCCTTTTATATATTAATAC-T-TTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
131 TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
40805489 ATTGAA
196 ATTGAA
40805495 GCGATGAGAC
Statistics
Matches: 5989, Mismatches: 366, Indels: 33
0.94 0.06 0.01
Matches are distributed among these distances:
615 571 0.10
616 1601 0.27
617 753 0.13
618 2116 0.35
619 947 0.16
620 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (618 bp):
AAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGCCTG
GGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACT
TAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGGTTC
ATTGAACCTTACCGTGTACTGAAACATGTGGGACCGATCACTTATTAACTTGAGTTTCCTCTGAA
ATTAGACCAGATTCATGATGTGCTTCACGTCTCCATACTAAGGATTTATCGCTCTGATCCCACTC
AGATAGTACAAGTTGAGAAGATTGAGCTTGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAG
ATTTTGGACCGTGAGGTTAAGTTACTGAAGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCG
TAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGATAGTAATACCCTCGTC
TTTTCTGACCTGGTAAATTTTGAGGTCGAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAA
AATTTAAGTCTCTAATTTTTGCATGTTTTGAAA
Found at i:40807024 original size:375 final size:375
Alignment explanation
Indices: 40806327--40807060 Score: 1021
Period size: 375 Copynumber: 2.0 Consensus size: 375
40806317 TGTGGGACCA
* * *
40806327 ATCGCTTATAAACTTGAGTTGCCTCAGAGATTAAACCATATTAATGATGTGTTTCACATCTCCAT
1 ATCGCTTATAAACTTGAGTTGCCTCAGAAATTAAACCAGATTAATGATGTGCTTCACATCTCCAT
* * * * * *
40806392 GCTAAGGCTTTATCTCTTTGATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCTAG
66 GCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAG
* * * * * *
40806457 ATCTGACCTTTAAGTAGATGCCAGTACAAATTTTAGACCGTGAGGTTAAGGTACTGAGGTAGAAA
131 ATCTGACCTTTAAGGAGAAGCCAATACAAATGTTAGACCGTGAGGTTAAGGTACTAAGGAAGAAA
* * * *
40806522 TCTATTCCATTAGTCAAAGTGCTTTGTCGTAATCACGGTTCAGAAGAAGCAACGTGGGAACCCGA
196 TCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTCAGAAGAAGCAACGTGGAAACCCGA
*
40806587 AGAGGCGATGCGACAACAATACCCTCATCTTTTTTGACCTGGTAAATTTCGAGGTCAAAATTTTA
261 AGAGGCGATGCGACAACAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTT-
* **
40806652 C-TAAAGGGGGTAGAGTTGTAACGCCTTAAAATTTGGGACGTTCGGGACTG
325 CTTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTTGGGACGTTCGGGACTG
* * * * *
40806702 ATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACGTCTCCAT
1 ATCGCTTATAAACTTGAGTTGCCTCAGAAATTAAACCAGATTAATGATGTGCTTCACATCTCCAT
40806767 GCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAG
66 GCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAG
** * *
40806832 ATCTGACC-TTAGAGGAGAAGCCAATGTAGATGTT-GTACCGTGAGGTTAAGTTACTAAGGAAGA
131 ATCTGACCTTTA-AGGAGAAGCCAATACAAATGTTAG-ACCGTGAGGTTAAGGTACTAAGGAAGA
*
40806895 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGTC-ACGTGGAAACC
194 AATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTCAGAAGAAG-CAACGTGGAAACC
* ** * **
40806959 TGGTGATGCGATGCGACAGTAATACCCTCATCTTTTCTGA-CTAGGTAAATTTCGAGG-CTAAAA
258 CGAAGAGGCGATGCGACAACAATACCCTCATCTTTTCTGACCT-GGTAAATTTCGAGGTC-AAAA
40807022 TTTTCTTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTT
321 TTTTCTTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTT
40807061 AAGTCTCTAA
Statistics
Matches: 314, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
374 8 0.03
375 305 0.97
376 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (375 bp):
ATCGCTTATAAACTTGAGTTGCCTCAGAAATTAAACCAGATTAATGATGTGCTTCACATCTCCAT
GCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAG
ATCTGACCTTTAAGGAGAAGCCAATACAAATGTTAGACCGTGAGGTTAAGGTACTAAGGAAGAAA
TCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTCAGAAGAAGCAACGTGGAAACCCGA
AGAGGCGATGCGACAACAATACCCTCATCTTTTCTGACCTGGTAAATTTCGAGGTCAAAATTTTC
TTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTTGGGACGTTCGGGACTG
Found at i:40807888 original size:617 final size:617
Alignment explanation
Indices: 40806695--40820610 Score: 19801
Period size: 617 Copynumber: 22.5 Consensus size: 617
40806685 TGGGACGTTC
* * *
40806695 GGGACTGATCGCTTATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* ** * * * *
40806760 TCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGATT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * * * *
40806825 AGGCCAGATCTGACCTTAGAGGAGAAGCCAATGTAGATGTTGTACCGTGAGGTTAAGTTACT-AA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * *
40806889 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGTCACGTGG
196 -GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * ** * *
40806954 AAACCTGGTGATGCGATGCGACAGTAATACCCTCATCTTTTCTGA-CTAGGTAAATTTCGAGG-C
260 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGGTC
* * *
40807017 TAAAATTTTCTTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCTGTATG
324 -AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATG
*
40807081 TTTTGAAAAAAATGCTTGTTTGCTTCAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
387 TTTTGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
* *
40807146 AAGTCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCAGACAC
452 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACAC
*
40807211 TGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTAATTTTCCACTGG
517 TGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
40807276 TAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
582 TAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* *
40807312 GGGACCGATCAGTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTCCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * *
40807377 TCTCCATACTAAGGAGTTATCCCTCTGATCCCACTCAGATAGTAAAAGTTGAGAAGGTTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* **
40807442 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTACAGATTTTGGACCCCGAGGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* *
40807507 GAAGAAATCTATTCCATTGGTCAAAGTGCTTTGGCGTAATCATAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * *
40807572 AACCCGAAGAGGCGATGCGACTGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCGA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
40807637 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
*
40807701 TGAAAAAAATGCTTGTTTGCTTTAATGGCAAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
390 TGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
* *
40807766 CCTGGGTTCAAGTCTTGGCCTTTACACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTAG
455 CCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTGG
40807831 CACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
520 CACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
40807896 GTTCATTGAACCTTACCGTGTACTGAAACATGT
585 GTTCATTGAACCTTACCGTGTACTGAAACATGT
*
40807929 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTACACCAGATTCATGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* ** * * *
40807994 TCTCCATGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * * * *
40808059 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCTGATTTTAGACCGTGAGGTTAAGCTACAGAG
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * * * *
40808124 GAAGAAATCGATTCCATTAGTCAAAATGCTTTGGCGTAATAACAATTAAGAAGAAGTCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * * * * * * *
40808189 AACCTGATGATGCGATACGATAGTAATACCCTTATCTTTTCTGA-CTAGGTAAATTTCGTGG-CT
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGGTC-
* * ** *
40808252 AAATTTTTCTTAAAACGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTACTGTTTGCATGTT
324 AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTT
* * * *
40808317 TAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
389 TTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
* * * * * * *
40808382 AGCCTGGGTTCAAGTCTTCGCCTTGGAATAATTTTTAGTTTTTCTATTAAATGAATCTGGACATT
453 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACT
* * * * * ** *
40808447 GGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACATAAAGAGCCTATTGGTCCAGTGGT
518 GGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGT
* * ** * *
40808512 AGGTTCGTCGAGGCTTACCGTGTACTAAAACCTGT
583 AGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * *
40808547 GGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40808612 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTAGAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* ** * * *
40808677 GGGCCAGATCTGACTTTCGAAAAGAAGCCAGTGCAAATTTTGGACCGTGAGGTTAGGTTACAGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * *
40808742 GAAGAAATCTATTCCATTAGTCAAAGTCCTTTGGCGTGATCACAGTTCAGAAGAAGCCATGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
*
40808807 AACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
40808872 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
40808936 TGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
390 TGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
* * *
40809001 TCTGGGTTCAAGTCTTGGCCTTTACACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTAG
455 CCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTGG
*
40809066 CACTTAGGCCTTTTATATATTAATACTTGTTTTTCGACACAAAGAGCTTATTTTTCCACTGGTAG
520 CACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
40809131 GTTCATTGAACCTTACCGTGTACTGAAACATGT
585 GTTCATTGAACCTTACCGTGTACTGAAACATGT
* * *
40809164 GGGACCGATCACTTATTAACTTGAGTTTCCTCTTAAATTAGACCATATTCAGGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40809229 TCTCCATATTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * * * *
40809294 GGGCTAGATCTGACTTTCGAGGAGAAGTCAGTGCAAATTTTGGACCGTGAGGTTAGGTTACAGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * *
40809359 GAAGAAATCTATTCCATTAGTCAAAGTCCTTTGGCGTGATCACAGTTCAGAAGAAGCCATGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* *
40809424 GACCCGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCT-AGCCTGGTAAATTTTGAGGTCA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGA-CCTGGTAAATTTTGAGGTCA
*
40809488 AAATTTTGTTAAAGGGGGTAGAGTTGTAATGCCCCAAAATTTAAGTCTCTAAT-TTCTGCATGTT
325 AAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTT
* *
40809552 TTGAAAAAAATGCTTGTTTGCTTTAATGGATAAGTGAGTTGGGTGTGTATGGGAGTGTTTGAGAA
389 TTGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* * *
40809617 GTCTGGGTTTAAGTCTTGGCCTTTGCACAATTTTTCGTTTTTCTCTTAAATGAATCCGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
40809682 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40809747 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
** * *
40809781 GGGACCGATCACTTATTAACCCGAGTTTCCTCTGAAATTAGACTAGATTCCTGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* *
40809846 TCTCCATAGTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGGTTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * *
40809911 GGGTCAGATCTGACCTTCGAGGAGAAGCCAATGCAGATTTTTGACCGTGAGGTTAGGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
*
40809976 GAAGAAATCTATTCCATTAGTCAATGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* *
40810041 AACCCGAAGAGGCGATGCGATAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
* *
40810106 GATTTTGTTAAAGGGGGTAGAGTTGTAACACCCCAAAATTTAAGTCTCT-ATGTTTGCATGTTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
* *
40810170 GACAAAAAAATGCTTGTTTGCTTCAATGGCTAAGTGATTCGGGTGTGTATGGGAGTGTTTGAGAA
391 G--AAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* **
40810235 GCCTGGATTCAAGTCTTAACCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
40810300 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40810365 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
*
40810399 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTTGACCAGATTCATGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * *
40810464 TCTCTATAGTTAGGATTTATCGCTCTGATCCTACTCAGATAGTACAAGTTGAGAAGGTTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40810529 GGGTCAGATCTGACCTTCGAGGAGAAGCTAGTGCAGATTTTGGACCGTGAGGTTAGGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * * *
40810594 GAAGAAGTGTATTCCATTAGTGAAAGTGCTTTCGCGTAATCACAGTTCAAAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* *
40810659 AACCCGAAGAGGCGATGCGACAATAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
* * *
40810724 AACTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTATGTCTCT-ATATTTGCATGTTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
* * * *
40810788 GAAAAAAATTCTTGTTTGCTTCAATGGCTAAGTGATTCGGGTGTGTATGAGAGTGTTTGAGAAGC
391 GAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGC
* *
40810853 CTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTTTTAAATGGATCCGGACACTGGC
456 CTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTGGC
*
40810918 ACTTAGGCCTTTTATATATTAATACTTGATTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGG
521 ACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGG
* *
40810983 TTCATTAAACCTTACCATGTACTGAAACATGT
586 TTCATTGAACCTTACCGTGTACTGAAACATGT
* *
40811015 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAACTAGACCAGATTCATGATGAGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
40811080 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40811145 GGGCCAGATCTGACCTTCGAGGTGAAGCTAGTGCAGATTTTGGACCGTGAGGTTAGGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* *
40811210 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCGACGTGGC
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
** * * *
40811275 AACCCGAAGAGTTGATGCGATAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAAGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
*
40811340 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTATGTCTCTAATGTTTGCATGTTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
*
40811405 GAAAAAAAATGCTTGTTTGCTTCAA-GGTCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
391 G-AAAAAAATGCTTGTTTGCTTTAATGG-CTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* *
40811469 GCTTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
* **
40811534 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAGGAGCTTATTTTTCCGTTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40811599 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * *
40811633 AGGACCGATCACTTATTAACTTGAGTTTCCTCTAAAATTAGACCTGATTCATGATGTGCTTCATG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40811698 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCATATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40811763 GGGCCAGATCTGACGTTCGAGGAGAAGCGAGTGCAGATTTTGGACCGTGAAGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
*
40811828 GAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * *
40811893 AACCTGAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTAAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
* * * *
40811958 AATTTTGCTAAATGGGGTAAAGTTGTAACGCCTCAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
* *
40812022 T-AAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTTATTTGGGTGTGTATGGAAGTGTTTGAGAA
390 TGAAAAAAA-TGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* * * **
40812086 GCATGAGTTCAAGTCTTGGCCTGTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCAAACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
*
40812151 GCACTTAGGTCTTTTATATATTAATACTT-TTTTTTGACAC-AA-AGCTTATTTTTCCACTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
* *
40812213 GGTTCATTGAATCTTACCGTGTACTAAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
* *
40812247 GGAACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATTATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* *
40812312 TCTCCATACTAAGGACTTATCGCTCTGATCCCACTCAGATAGTTCAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* *
40812377 GGGCCAGATCTGACCTTCGAGGTGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAGGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
40812442 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
*
40812507 AACCCGAAGAGGCGATGCGATAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
40812572 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
* * *
40812637 GAAAAAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTAGGTGTGTATGGGAGTGTTTAAGAAG
391 GAAAAAAA-TGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAG
* * * *
40812702 CCTGGGTTCAAGTCTTGGCATTGGCACAATTTCTAGTTTTTCTCTTAAATGAATCCGGACTCTGG
455 CCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTGG
*
40812767 CACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACATAAAGAGCTTATTTTTCCACTGGTAG
520 CACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAG
40812832 GTTCATTGAACCTTACCGTGTACTGAAACATGT
585 GTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * * *
40812865 GGGATCAATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
40812930 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40812995 GGGCCAGATCTGACCTTCGAGGAAAAGCCAGTGCAGATTTTAGACTGTGAGGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * *
40813060 GAAAAAATCTATTCCATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCGACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
*
40813125 AACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
*
40813190 AATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
* *
40813254 TGAAAAAAATGCTTGTTTGCTTCAA-GGTCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAT
390 TGAAAAAAATGCTTGTTTGCTTTAATGG-CTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
*
40813318 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
* *
40813383 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAGGAGCTTATTTTTCCACTGGTC
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
*
40813448 GGTTCATTGAACCTTACCATGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
* *
40813482 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGAGCCTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
*
40813547 TCTCCATACTAAGGATTTATCACTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
*
40813612 GGGCCAGATCTGACCTTCGAGGTGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* **
40813677 GAAGAAATCTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTTCAGAAGAAGATACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* *
40813742 AACCCGAACAGGCGATGCGACAGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
* * *
40813807 AATTTTGTTAAATGTGGTAGAGTTGTAACGCCCTAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
* ** *
40813871 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTAGGGTGTGTATGGGAGTCCTTGGGAA
390 TGAAAAAAA-TGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAA
* * *
40813936 GCCTGAGTTCAAGTCTTGGCCTGTACACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
*
40814001 GCACTTAGGTCTTTTATATATTAATACTTGTTTTTTGACAC-AA-AGCTTATTTTTCCACTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40814064 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * *
40814098 AGAACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCATG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* *
40814163 TCTCCATACTAAGGACTTATCGCTCAGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* **
40814228 GGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTGGGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
*
40814293 GAAGAAATCTATTCCATTAGTCAAAGTACTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
*
40814358 AACCCAAAGAGGCGATGCGACAGTAATACCCTCGGCTATTCTGAGTAGTAATACCCTCGTCTTTT
261 AACCCGAAGAGGCGATGCGACAGTAATA--C-C--C---TC-----------A------TCTTTT
* * * *
40814423 CTGACCTGGTAAATTTTGAGGTCAAAATTTTGTTAAATGGGGTAGAGTTGTAATGCCCTATAATT
301 CTGACCTGGTAAATTTTGAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATT
* * *
40814488 TAAGTCTCTAATTTTTGTATGTTTTGAAAAAAAAATACTTGTTTGCTTTAATGGCTAAGTGATTT
366 TAAGTCTCTAATGTTTGCATGTTTTG--AAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTT
* * *
40814553 GGGTGTGTATGAGAGTGTTTGAGAAGCCTAGGTTCAAGTCTTGGCCTTTGCACAATTTTTAG-CT
429 GGGTGTGTATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTT
* * *
40814617 TTCTCTTAAATGAATCTGGACATTGGGACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
494 TTCTCTTAAATGAATCCGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACA
* *
40814682 CAATGAGCTTATTTTTCCATTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
559 CAAAGAGCTTATTTTTCCACTGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
*
40814741 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
40814806 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * *
40814871 TGGCCAGATCTGACCTTCGAGGACAAGCCAGTGAAGATTTTGGACCGTGAGGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* *
40814936 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCATAATCATAGTTCAGAAGAAGCCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * *
40815001 AACCCGAAAAGGCGATGCGACCGTAATACCCTCGTCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
* * *
40815066 GATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCAGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
*
40815130 TGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGCCG-TTTGGGTGTGTATGGGAGTGTTTGAGA
390 TGAAAAAAA-TGCTTGTTTGCTTTAATGGCTAAG-TGATTTGGGTGTGTATGGGAGTGTTTGAGA
*
40815194 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACT
453 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACT
*
40815259 GGCACTTAGGCCGTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGT
518 GGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGT
40815324 AGGTTCATTGAACCTTACCGTGTACTGAAACATGT
583 AGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * *
40815359 GGGATCGATCTCTTATAAACTTAAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* ** * * *
40815424 TCTCCATGCTAAGGCGTTATCGCTCTCATCCCACTCAAATAGTACAAGTTGAGAACATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * *
40815489 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAG
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * * *
40815554 GAAGAAATCGATTACATTAGTCAAAGTGCTTTGGCGTAATAACAGTTGAGAAGAAGTCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * * * * * *
40815619 AACCTGATGATGCGATACGATAGTAATACCCTCATCTTTTCT-AACTAGGTAAATTTCGAGG-CT
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGGTC-
*
40815682 AAAATTTTCTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTT
324 AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTT
* * * *
40815746 TAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
389 TTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
** * * * *
40815811 AGCCTGGGTTCAAGTCTTCACCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATT
453 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACT
* * * * ** *
40815876 GGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGT
518 GGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGT
* ** *
40815941 AGGTTCATCGAGGCTTACCGTGTACTAAAACATGT
583 AGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * * *
40815976 GGGACTGATCGCATATAAACTTGAGTTTCCTCTGTAATTAGACCAGATTCATGATGTGTTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * * * *
40816041 TCTCCATGCTAAGGCA--TATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGT
66 TCTCCATACTAAGG-ATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* * * * * * *
40816104 TAGGCCAGATCTTACCTTCGAGGAGAAGCCAGTGCAAATTTTGTACCATGGGGTTAAGGTACTGA
130 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* * * * *
40816169 GGAAGAAATCTATTCCATTTGTCAAAATGCTTTGGCGTAAT-AGTAGTTTAGAAGAAGCCACGTG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGAAGCCACGTG
* * ** *
40816233 GGAACCC-AAGTGGGTGATGCGACAACAATACCCTCATTTTTTCTGA-CTAGGTAAATTTCT-AG
259 GGAACCCGAAG-AGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTT-TGAG
* * * ** **
40816295 GCCGAAATGTCCTTAAATAGGGTAGAGTTG-AACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
321 GTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
* * * * * *
40816359 GTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTAGGTGTGTATGGGAGTGTTTA
386 GTTTTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTG
40816424 AGAAGCCTGGGTTCAAGTCTTGG-CTTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGA
450 AGAAGCCTGGGTTCAAGTCTTGGCCTTT-GCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGA
* *
40816488 CACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTCTTGACATAAAGAGCTTATTTTTCCAC
514 CACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCAC
40816553 TGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
579 TGGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * *
40816592 GGGATCGATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* *
40816657 TCTCTATACTAAGGATTTATCGCTCTGATCCGACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* *
40816722 GGGCCAGATCTGACCTTCGAGGAAAAGCCAGTGCAGATTTTAGACCGTGAGGTTAAGTTACTGAA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* *
40816787 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCGACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
*
40816852 AACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
*
40816917 AATTTTGTTCAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAAT-TTCTGCATGTTT
326 AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTT-TGCATGTTT
*
40816981 TGAAAAAAATGCTTGTTTGCTTTAATGGCTAAGCCG-TTTGGGTGTGTATGGGAGTGTTTGAGAA
390 TGAAAAAAATGCTTGTTTGCTTTAATGGCTAAG-TGATTTGGGTGTGTATGGGAGTGTTTGAGAA
40817045 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
454 GCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTG
* * *
40817110 GCACTTCGGCCTTTTATATATTAATTCTTGTTTTTTGACGCAAAGAGCTTATTTTTCCACTGGTA
519 GCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTA
40817175 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
584 GGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * * ** *
40817209 GGGATCGATCTCTTATAAACTTAAGTTTCTTCTGAAATTCCACCAGATTCATGATGTGCTTCATG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* ** * * * *
40817274 TCTCCATGCTAAGGCGTTATCGCTCTCATCCCACTAAAATAGTACAAGTTGAGAACATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * *
40817339 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAG
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * * *
40817404 GAAGAAATCGATTCCATTAGTCAAAATGCTTTGGCGTAATAACAGTTAAGAAGAAGTCACGTGGG
196 GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
* * * * * * * * *
40817469 AACCTGATGATGCGATACGATAGTAATACCCTTATCTTTTCTGA-CTATGTAAATTTCGTGG-CT
261 AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGGTC-
* *
40817532 AAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTACTGTTTGCATGTT
324 AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTT
* * * * *
40817597 TAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGA
389 TTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGA
* * * * *
40817662 AGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACATT
453 AGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACT
* * * * * * ** *
40817727 GGCACGTAGGCCGTTTATATTTTACTACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGT
518 GGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGT
* * ** *
40817792 AGGTTCGTCGAGGCTTACCGTGTACTAAAACATGT
583 AGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * *
40817827 GGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * * * *
40817892 TCTCCATGCTAAGGCA-TTATCGCTCTGATCCCACTCACATAGTACTAGATGGGGAGATTGAGGT
66 TCTCCATACTAAGG-ATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* * * * * * *
40817956 TAGGCCAGATCTTACCTTCGAGGAGAAGCCAGTGCAAATTTTGTACCATGGGGTTAAGGTACTGA
130 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* * * * *
40818021 GGAAGAAATCTATTCCATTTGTCAAAATGCTTTGGCGTAAT-AGTAGTTTAGAAGAAGCCACGTG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGAAGCCACGTG
* * * ** *
40818085 CGAACCCG-AGTGGTTGATGCGACAACAATACCCTCATTTTTTCTGA-CTAGGTAAATTTCT-AG
259 GGAACCCGAAGAGG-CGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTT-TGAG
* * **
40818147 GCCGAAATTTCCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
321 GTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
* * * * * * *
40818212 GTTTAGACACAAATTGCTTGTTTTCTTTAATGGATAAGTGATTTAGGTGTGTATGGGAGTGTTTA
386 GTTTTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTG
* * *
40818277 AGAAGCCTGGGTTCAAGTCTGGGCATTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGAC
450 AGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGAC
* * *
40818342 ACTGGCACTTAGGCCTTTTATATATTAATACATGTTTTTTGACATAAATAGCTTATTTTTCCACT
515 ACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACT
40818407 GGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
580 GGTAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * *
40818445 GGGATCGATCGCTTATAAACTTGACTTTCCTCTGAAATTAGACCAGATTCATGATCTGCTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * *
40818510 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTTAGATAGTACAAGCTGAGAACATTGAGCTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * *
40818575 TGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGCTACAGAG
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
* * * *
40818640 GAAGAAAT-TGATTCCATTAGTCAAAGTGCTTTGGCATAATAACAGTTGAGAAGAAGTCACGTGG
196 GAAGAAATCT-ATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* * * * * * *
40818704 GAACCTGATGATGCGATACGATAGTAATACCCTCATCTTTTCTGA-CTAGGTAAACTTCGAGG-C
260 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTTTGAGGTC
* *
40818767 TAAAATTTTCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTACTGTTTGCATGT
324 -AAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGT
* * * * *
40818832 TTAGACACAAATTACTTGTTTGCTTTAATGGATAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
388 TTTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
* * * * *
40818897 AAGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAT
452 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACAC
* * * * * ** *
40818962 TGGCACGTAGGCCTTTTATATATTAGTACTTGTGTTATGACACAAAGAGCCTATTGGTCCAGTGG
517 TGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
* ** * *
40819027 TAGGTTCATCGAGGCTTACCGTGTACTAAAACCTGT
582 TAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * *
40819063 GGGACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
** * * * * * * *
40819128 TCTCCACGCTGAGG-TATTATCGCTCTGATCCCACTCATATAGTACTAGATGGGGAGATTGAGGT
66 TCTCCATACTAAGGAT-TTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCT
* * * * * * * * *
40819192 TAGGCCAGATCTTACCTTCGAGGAGAATCTAGTGAAGATTTTGTACCATG-GGGTAAGATACTGA
130 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* * * * * * *
40819256 GGAAGAAATCTATTCCATTTGTCAAACTGCTTTAGCGGAAT-AGTAGTTTAGAAGAAGCCACGTG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGAAGCCACGTG
* * * ** *
40819320 GGAGCCCG-AGTGGGTGATGCGACAACAATACCCTCATTTTTTCTGA-CTAGGTAAATTTCT-AG
259 GGAACCCGAAG-AGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTT-TGAG
* * ** *
40819382 GCCGAAATTTCCTTAAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
321 GTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCAT
* * * * * * *
40819447 GTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGACTTAGGTGTGTATGGGAGTGTTTA
386 GTTTTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTG
* * *
40819512 AGAAGCCTGGGTTCAAGTCTTGGCATTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGAC
450 AGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGAC
* * * * ** **
40819577 ACTGGCACGTGGGCATTTTATATATTAATACTTGTTTTTTGACACAAAGAGC-CATTGGTCCTGT
515 ACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACT
** *
40819641 GGTAGGTTCATTGGGCCTTACCGTGTACT-ACAACGTGT
580 GGTAGGTTCATTGAACCTTACCGTGTACTGA-AACATGT
* * * * ** * *
40819679 GGGATCGATCGCTTATAAACTTGAGTTTCCTCTGAGATTAGACCTTATTCATGATGTGTTTCACA
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* * * * * * * *
40819744 TCTCCATGCTAAGGCTTTATCTCTTTGATACCACTCACATAGTACTAGTTGAG--GTATTGAGGT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAG-ATTGAGCT
** * * * * *
40819807 CAGGCCAGATCTGACCTTCGAGGACATGCCAGTACAGATTTCGGACCGTGAGGTTAAGGTACTGA
130 TGGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGA
* *
40819872 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCAACGTGG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGG
* *
40819937 GAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCCTTTT-TGACCTGGTAAATTTCGAGGTC
260 GAACCCGAAGAGGCGATGCGACAGTAATACCCTCAT-CTTTTCTGACCTGGTAAATTTTGAGGTC
* * * *
40820001 AAAATTTTGTTAAAGGGGGTA-ATGTTGTAGC-CCCCAAAATTGAAGTCTCTAATTTTTCCATGT
324 AAAATTTTGTTAAAGGGGGTAGA-GTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGT
* * * *
40820064 TTTGACACAAATTGCTTGATTGTTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
388 TTTGA-AAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAG
* * * * *
40820129 AAGCCTGGGTTCAAGTCTTCGCCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACAT
452 AAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACAC
* * * * * ** *
40820194 TGGCACGTAGGCCTTTTATATATTACTACTTGTTTTATGACACAAAGAGCCTGTTGGTCCAGTGG
517 TGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGG
* ** * *
40820259 TAGGTTCATCGAGGCTTACCGTGTAGTAAAACATGT
582 TAGGTTCATTGAACCTTACCGTGTACTGAAACATGT
* * * * * *
40820295 GGGACTGATCGCATGTAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACG
1 GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
* ** * * * * * * * *
40820360 TCTCCATGCTAAGGCGTTATCGCTCGGATCTCACTCACATAGTACTAGATGGGGAGATTGAGGTT
66 TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
* * * * ** *
40820425 AGGCCAGATCTTACCTTCGAGGAGAAGCCAGTGCAAATTTTGTACCAAG-GGCTTAAGGTACTGA
131 GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG-TTAAGTTACTGA
* * * * * *
40820489 GGAAGGAATCTGTTCCATTAGTCAAAATGCTTTGGCGTAAT-AGTAGTTTAGAAGAAGCCACGTG
195 AGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGAAGCCACGTG
* ** * * *
40820553 GGAACCC-AAGGGGCTGATGCGACAACAATACCTTCATTTTTTCT-AACTAGGTAAATTT
259 GGAACCCGAAGAGGC-GATGCGACAGTAATACCCTCATCTTTTCTGACCT-GGTAAATTT
40820611 AAGTCTCTAA
Statistics
Matches: 12033, Mismatches: 1138, Indels: 256
0.90 0.08 0.02
Matches are distributed among these distances:
614 415 0.03
615 395 0.03
616 1908 0.16
617 4480 0.37
618 4249 0.35
619 10 0.00
621 1 0.00
624 2 0.00
635 2 0.00
638 1 0.00
640 1 0.00
641 154 0.01
642 85 0.01
643 330 0.03
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (617 bp):
GGGACCGATCACTTATTAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGCTTCACG
TCTCCATACTAAGGATTTATCGCTCTGATCCCACTCAGATAGTACAAGTTGAGAAGATTGAGCTT
GGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTACTGAA
GAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGG
AACCCGAAGAGGCGATGCGACAGTAATACCCTCATCTTTTCTGACCTGGTAAATTTTGAGGTCAA
AATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATGTTTGCATGTTTT
GAAAAAAATGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGTGTTTGAGAAGC
CTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATCCGGACACTGGC
ACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTTCCACTGGTAGG
TTCATTGAACCTTACCGTGTACTGAAACATGT
Found at i:40814407 original size:25 final size:25
Alignment explanation
Indices: 40814379--40814426 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
40814369 GCGATGCGAC
40814379 AGTAATACCCTCGGCTATTCTGAGT
1 AGTAATACCCTCGGCTATTCTGAGT
* *
40814404 AGTAATACCCTCGTCTTTTCTGA
1 AGTAATACCCTCGGCTATTCTGA
40814427 CCTGGTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (25 bp):
AGTAATACCCTCGGCTATTCTGAGT
Found at i:40822745 original size:618 final size:617
Alignment explanation
Indices: 40820919--40823943 Score: 4222
Period size: 618 Copynumber: 4.9 Consensus size: 617
40820909 TTCATGATGT
* * * * * * *
40820919 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGACATGCCAGTACAGATTTTGGACCATGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
40820984 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* *
40821049 GCAACGTGGGAACCTGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTTTGACCTGGTAAATT
131 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTTTGACCTGGTAAATT
*** * * *
40821114 TCGCGGTCGAAATTTTGTTAAAGGGGGTAGTGTTGTAGC-CCCCAAAATTTAAGTCTCTAATTTT
196 TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTT
* * * ** * *
40821178 TCCATGTTTTGACACAAATTGCTTGATTATTTTAATGGCTATGTGATTTGGGTGTGTATGGAAGT
261 TGCATGTTTTGACAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGT
* * * * *
40821243 ATTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGAACAATTTTTTGTTTTTCTCCTAAATGAATG
326 GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATC
* *
40821308 TGGACACTGGCACATAGGCGTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTCTTGGT
391 TGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* * *
40821373 CTAGTGGTAGGTTCATTGGGCCTTACCGTGTAC-AAAAATGTGTCAGACCGATCGCCTATAAACT
456 CCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTAAACATGTG--GGACCGATCGCCTATAAACT
* * *
40821437 TGA-TTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCCAAGGCGTTAT
519 TGAGTTT-CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTAT
** *
40821501 TACTCTGATCCCACTCACATTGTACCAGTTGAGGA
583 CGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * *
40821536 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCCAGTGCAAAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40821601 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAGAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * * *
40821666 GCCACGTGGCAACCTGAAGAGGCGATACGACAGCAATACCCTCAACTTTTCTT-ACCAGGTAAAT
131 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTT-TTGACCTGGTAAAT
* * * * * * * *
40821730 TTTGAGGTCAAAATTTTGTTCAATGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCCAATTT
195 TTTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTT
* ** * * *
40821795 TTGCATGTTTTGACCAAAAATTGCTTGTTTGTTTTAATTTCTAACTGATTTGCGTGTGCATGGGA
260 TTGCATGTTTTGA-CAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGA
* ** *
40821860 GTGTTTCAGAAGCCTGGGTTCAAGTCTTTACCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAA
324 GTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAA
* * *
40821925 TCTGGACACTTGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGTCTATTG
389 TCTGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTG
* **
40821990 GTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGAAACGTGTCAGACCGATCGCCTATAAAC
454 GTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT-AAACATGTGGGACCGATCGCCTATAAAC
* * * *
40822055 GTGA-TTTGCCTATGAAATTAGACCTGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTA
518 TTGAGTTT-CCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTA
*
40822119 TTGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
582 TCGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * **
40822155 GATTAAGGTTAGACCAGATTTGACCTTCGAGGAGAAGCCAGTACAGAGTTCAGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
* * * *
40822220 AGGTACCGAAGAAGAAATCTATTCAATTATTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * *
40822285 GCCACGTGGGAACCCAAAGAGGCGATACGACAGTAATACCCTCGTCTTTTTTGACCTGGTAAATT
131 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTTTGACCTGGTAAATT
40822350 TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTT
196 TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTT
* *
40822415 TGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGT
261 TGCATGTTTTGACAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGT
*
40822480 GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTTAAATGAATC
326 GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATC
* * * * **
40822545 CGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTTTGACACAAAGAGCTTATTTTT
391 TGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* ** * * *
40822610 CCACTGGTAGGTTCATTGAACCTTACCATGTACTGAAACATGTGGGATCGATCGCTTATAAACTT
456 CCAGTGGTAGGTTCATTGGGCCTTACCGTGTACT-AAACATGTGGGACCGATCGCCTATAAACTT
* *
40822675 GAGTTTCCTCTGAAATTAGACAAGATTCATGATGTGCTTCACGTCTCCATGCTAAGGCGTTATCG
520 GAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCG
*
40822740 CTCTGATCCCACTCAAATAGTACCAGTTGAGGA
585 CTCTGATCCCACTCACATAGTACCAGTTGAGGA
*
40822773 GATTAAGGTTAGACCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
* * * *
40822838 AGGTACCGAAGAAGAAATCTATTCCTTTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAAAAGAA
66 AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
* * * *
40822903 GCCACGTGGGAACCCAAAGAGGCGATGCGACAGTAATACCCTCGTCTTTTTTGACCTAGTAAATT
131 GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTTTGACCTGGTAAATT
*
40822968 TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAATCTCTAATTTT
196 TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTT
*
40823033 TGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGT
261 TGCATGTTTTGACAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGT
* *
40823098 GTTTGAGAAACCTGGGTTCAAGTCTTGGCCTTGGAACAATTTTTAGTTTTTCTCTTAAATGAATC
326 GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATC
* * *
40823163 TTGACATTGGCACATAGGCCTTTTATATATTACTACTTGTTTTATGACACAAAGAGCCTATTGGT
391 TGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* * * * **
40823228 CCAGTGGTAGGTTCATCGAGG-CTTACCGTGTACAAAAACATGTGGGACTGATCGCATATGTACT
456 CCAGTGGTAGGTTCATTG-GGCCTTACCGTGTAC-TAAACATGTGGGACCGATCGCCTATAAACT
* *
40823292 TGAGTTTTCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATC
519 TGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATC
* * *
40823357 GCTCTGATCCCACTCACATAGTACTAGATGGGGA
584 GCTCTGATCCCACTCACATAGTACCAGTTGAGGA
* * * * * * * *
40823391 -ATTGAGGTTAGGCCAAATCTT-ACCTTCGAGGAGAAGCTAGTGGAGATTTTGTACCATGGGGTT
1 GATTAAGGTTAGGCCAGAT-TTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTT
* * * * * *
40823454 AAGGTACTGAGGTA-AAATATGTTCCATTAGTCAAAATGCTTTGGCGTAAT-AGTAGTTTAGAAG
65 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAG
* * * * * *
40823517 AATCCACGTGGGAACCCGAGGGGGTGATGCGACAACAATACCCTCAT-TTTTTCT-AACTAGGTA
129 AAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTT-TGACCT-GGTA
* * **
40823580 AATTTCTAGGCCAAAATTTCCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAA
192 AATTTTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAA
* * * * *
40823645 TGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGATAAGTGATTTAGGTGTGTATGG
257 TTTTTGCATGTTTTGACAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGG
* **
40823710 GAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCAATGGCACAATTTTTAGTTTTTCTCTTAAATG
322 GAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* * * * *
40823775 AATCTGGACACTGGCACATAGGCATTTTATATATTGATACTTATTTTTTGACACAAAGAGCC-AC
387 AATCTGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * *
40823839 TGGTCCTGTGGTAGGTTCATTGGGCCTTACCGTGTACTACAATATGTGGGACCGATCACTTATAA
452 TGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTA-AACATGTGGGACCGATCGCCTATAA
* **
40823904 ACTTGAGTTTCCTCTGAGATTAGACCTTATTCATGATGTG
516 ACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTG
40823944 ATTGAGGTTA
Statistics
Matches: 2158, Mismatches: 235, Indels: 32
0.89 0.10 0.01
Matches are distributed among these distances:
614 3 0.00
615 96 0.04
616 317 0.15
617 268 0.12
618 917 0.42
619 551 0.26
621 6 0.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (617 bp):
GATTAAGGTTAGGCCAGATTTGACCTTCGAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
AGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
GCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTTTGACCTGGTAAATT
TTTAGGTCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTT
TGCATGTTTTGACAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTATGGGAGT
GTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATGAATC
TGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
CCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTAAACATGTGGGACCGATCGCCTATAAACTTG
AGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGC
TCTGATCCCACTCACATAGTACCAGTTGAGGA
Found at i:40828272 original size:618 final size:618
Alignment explanation
Indices: 40823943--40828742 Score: 7605
Period size: 619 Copynumber: 7.8 Consensus size: 618
40823933 TTCATGATGT
* * * * * * * * * *
40823943 GATTGAGGTTAGGCCAGATCTGACCTTCGAGGACATGCCAGTACAGA-TTTCGGACTGTGAGGTT
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTT-GGACCGTGAGGTT
* *
40824007 AAGGTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGA
65 AAGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCA-AAGA
* * * * * * * *
40824072 AGCAACGTGGGAACCTGAAGAGGCGATGCGATAGCAATACCCTCATCTTTT-TTGACCTGGCAAA
129 AGCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTT-ACCAGGTAAA
* * * * * **
40824136 TTTCGAGGTCGAAATTTTGTT-AAAGGGGTAGTGTTGT-A-GCTCCCAAAATTTAAGTGTCTAAT
193 TTTCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGC-CACAAAATTAAAGACTCTAAT
* * * * * * * * **
40824198 TTTTCCATATTTTGA-CACAAATTTCTTGATTGTTTTAATGGCTATGTGATTTTGGTGTGTGTGG
257 TTTTGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGG
* *
40824262 GAGTGTTTGAGAAGCCAGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATG
322 GAGTGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATG
40824327 AATCTGGACACTGGCACATAGGCATTTTATTTATATATTAATACTTGTTTTATGACACAAAGAGC
387 AATCTGGACACTGGCACATAGGCA---T-TTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * *
40824392 CTCTTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTTAGACCGATCGCCC
448 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCT
* *
40824457 ATAAACTTGATTTGCCTATGAAATTACACCAGGTTCATGATGTGTTTCAGGTCTCCATGCTAAGG
513 ATAAACTTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGG
* * *
40824522 CGTTATTGCTCTGATCCCACTCACATAGTACAAGTTGAGGA
578 CGTTATTACTCTGATCCAACTCACATAGTACCAGTTGAGGA
* *
40824563 GATTAAGGTTAGGCCAGATTTGACCATCAAGGAGAAGCCAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
*
40824628 AGGTACTTAGAAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAATAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAA-AGAA
* *
40824693 GCCACGAGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTTAGCTTTTCTTACCAGGTAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
*
40824758 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
40824823 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
40824888 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
*
40824953 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAATAGCCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
40825018 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
455 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
40825083 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
*
40825148 ACTCTGATCCAACTCACATAATACCAGTTGAGGA
585 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
* *
40825182 GATTAAGGTTAGGCCAGAATTGACCATCAAAGAGAAGATAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
*
40825247 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCATAATCCCAGTTCAATAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAA-AGAA
*
40825312 GCCACGAGGGAACCCGAAGGGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
*
40825377 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
40825442 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
40825507 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
*
40825572 CTGGACATTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
40825637 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
455 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
40825702 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
*
40825767 ACTCTGATCCAACTCACATAGTACCAGTTGAAGA
585 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
40825801 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40825866 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTCGTGTAATCCCAGTTCAAAAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTC-AAAGAA
*
40825931 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGAAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
*
40825996 TCGAGGTCAAAATTTTATTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
*
40826061 TGCATGTTTTAACAAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
* *
40826126 TGTTTCAGAAGCTTGGGTTCAAGTCTTGGCCTTGACACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
* * *
40826191 CTAGACATTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAGGAGCCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
40826256 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
455 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
40826321 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
40826386 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
585 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
*
40826420 GATGAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
40826485 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAATAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAA-AGAA
*
40826550 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAACTTTTCTTACCAGGTAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
*
40826615 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTGAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
40826680 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
*
40826745 TGTTTCAGAAGCCTAGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
*
40826810 CTGGACATTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
*
40826875 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAAAT
455 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
*
40826940 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGATTCAGGTCTCCATGCTAAGGCGTTATT
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
40827005 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
585 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
40827039 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* *
40827104 AGGTACTTAGGAAGTAATCTATTCCATTAGTCAAAGTGCTTTGGTGTAATCCCAGTTCAAAAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTC-AAAGAA
40827169 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
40827234 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
40827299 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
* *
40827364 TGTTTCAAAAGCCTGTGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
* * *
40827429 CTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGTCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
* * * * * *
40827494 TCCAATGGTAGGTTCATTGGGCCTTACCGTGTACTGAAACATTTCAGACCGATCGCCTATAAACG
455 TCCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACT
* * *
40827559 TGATTTGCCTATGAAATTAGACCTGACTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATC
520 TGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATT
* * *
40827624 GCTCTGATCCCACTCGCATAGTACCAGTTGAGGA
585 ACTCTGATCCAACTCACATAGTACCAGTTGAGGA
** * * *
40827658 GATTAAGGTTACACCAGATTTGACCTTCGAGGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
1 GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
* * *
40827723 AGGTACTGAGGGAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAA
66 AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCA-AAGAA
*
40827788 GCCACGTGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
130 GCCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATT
* * * *
40827853 TTGAGGTCAAAATTTTGTTAAAGAGGGTAGAGTTGTAACGCCACAAAATTAAAGACTCTAATTTT
195 TCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTT
*
40827918 TGCATGTTTTGA-CAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
260 TGCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAG
* * * * * * *
40827982 TGTTTGAGAAGCTTGGGTTCAAGTCTTGGGCTTGTCACAATTTTTAATTTTTCGCTTAAATGAAT
325 TGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAAT
* * * * *
40828047 CTGAACACTGGCACTTAGGCCTTTTATACATTAGTACTTGTTTTATGACACAAAGAGCCTATTGG
390 CTGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGG
* * * ** * ** *
40828112 TCCAGTAGTAGGTTCATTGGGCCTTA-TCGTGTATTGAAACTTGTGGGACTGATGGCTTATAAAC
455 TCCAGTGGTAGGTTCATTGGGCCTTACT-GTGTACTGAAACGTGTCAGACCGATCACCTATAAAC
* * * **
40828176 TTGAGTTGTCTCTGAAATTAGACCAGATTCATGATGTGTTTCACATCTCCATGCTAAGGCGTTAT
519 TTGATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTAT
** *
40828241 CGCTCTGATCCCACTCACATAGTACCAGTTGAGGA
584 TACTCTGATCCAACTCACATAGTACCAGTTGAGGA
* * * * * * *
40828276 GATTGAA-GTTAGGCCAAATCTGACCATCGAGGAGAAGCTAGTGCAAATTTTGTACCGTGAGGTT
1 GATT-AAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTT
* * * * * ** *
40828340 ATGGTACTGAGGAAGAAACCTATTCCATTAGTCAAAGTGGTTTGGCATAATGACAGTTGAGAAGA
65 AAGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCA-AAGA
* * * * * * *
40828405 AGCCACGTA-AGAACCTGAAAAGGCGATGCGATAGCAATACCCTCATCTTTTCTGACCAGGTAAA
129 AGCCACG-AGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAA
* * * ** * * * * * *
40828469 TTTCGAGGCCGACATTTCCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATG
193 TTTCGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATT
* * * * *
40828534 TTTGCATG-TTTAGA-CACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGATGTGTATGT
258 TTTGCATGTTTTA-ACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGG
* * * *
40828597 GAGTGTTTGAGGAGCCTGGGTTCAAGTCTTGGCCTTGGTACAACTTTTAGTTTTTC-CCTTAAAT
322 GAGTGTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCC-TAAAT
* * * *
40828661 GAATCTAGACACTGGCACTTAGGTC-TGTGATATATTAATACTTGTTTTATGACACAAAGAGCCT
386 GAATCTGGACACTGGCACATAGG-CATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
40828725 ATTGGT-CATGTGGTAGGT
450 ATTGGTCCA-GTGGTAGGT
40828743 CGGGTGTGAG
Statistics
Matches: 3940, Mismatches: 222, Indels: 38
0.94 0.05 0.01
Matches are distributed among these distances:
617 6 0.00
618 712 0.18
619 2852 0.72
620 190 0.05
621 19 0.00
622 30 0.01
623 131 0.03
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (618 bp):
GATTAAGGTTAGGCCAGATTTGACCATCAAAGAGAAGCTAGTGCAGAGTTTGGACCGTGAGGTTA
AGGTACTTAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCCCAGTTCAAAGAAG
CCACGAGGGAACCCGAAGAGGCGATACGACAGCAATACCCTCAGCTTTTCTTACCAGGTAAATTT
CGAGGTCAAAATTTTGTTCAAGGGGGTAGAGTTGTAATGCCACAAAATTAAAGACTCTAATTTTT
GCATGTTTTAACCAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTGCATGGGAGT
GTTTCAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCCTAAATGAATC
TGGACACTGGCACATAGGCATTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
CCAGTGGTAGGTTCATTGGGCCTTACTGTGTACTGAAACGTGTCAGACCGATCACCTATAAACTT
GATTTGCCTATGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGGCGTTATTA
CTCTGATCCAACTCACATAGTACCAGTTGAGGA
Found at i:40829925 original size:28 final size:27
Alignment explanation
Indices: 40829885--40829973 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
40829875 AATCATGAGC
* * *
40829885 AAATGACTAAATTATCACTGGAGTGGTA
1 AAATGACCAAATTACCACTGAAG-GGTA
*
40829913 AAATGACCAAATTACCCCTGAAGGGTA
1 AAATGACCAAATTACCACTGAAGGGTA
* *
40829940 AAATGACCGAATTACC-CTTATAGGGTA
1 AAATGACCAAATTACCACTGA-AGGGTA
40829967 AAATGAC
1 AAATGAC
40829974 TATTATACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
26 3 0.06
27 32 0.59
28 19 0.35
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (27 bp):
AAATGACCAAATTACCACTGAAGGGTA
Found at i:40830350 original size:28 final size:28
Alignment explanation
Indices: 40830310--40830370 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
40830300 ATTGTATTGA
*
40830310 TTACTGTATTGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
40830338 TTACTGTAATGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
40830366 -TACTG
1 TTACTG
40830371 ATACTGTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 5 0.16
28 27 0.84
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (28 bp):
TTACTGTAATGGGCTAAGGCCCACACTG
Found at i:40830385 original size:33 final size:31
Alignment explanation
Indices: 40830302--40830398 Score: 85
Period size: 28 Copynumber: 3.1 Consensus size: 31
40830292 ATCACTGCAT
*
40830302 TGTATTGATTACTGTATTGGGCTAAGGCCCACAC
1 TGTA-TGA-TACTGTA-AGGGCTAAGGCCCACAC
40830336 TG--T--TACTGTAATGGGCTAAGGCCCACAC
1 TGTATGATACTGTAA-GGGCTAAGGCCCACAC
* *
40830364 TGTACTGATACTGTACAGGGCTCAGGCCCAGAC
1 TGTA-TGATACTGTA-AGGGCTAAGGCCCACAC
40830397 TG
1 TG
40830399 ATTTTGCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
28 25 0.47
31 2 0.04
33 23 0.43
34 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.27
Consensus pattern (31 bp):
TGTATGATACTGTAAGGGCTAAGGCCCACAC
Found at i:40843334 original size:28 final size:28
Alignment explanation
Indices: 40843289--40843388 Score: 139
Period size: 28 Copynumber: 3.5 Consensus size: 28
40843279 GTGCCCTATA
40843289 CAATATCAGT-ACAGTGTGGGCCTTAGCC
1 CAATA-CAGTAACAGTGTGGGCCTTAGCC
*
40843317 CATTACAGTAACAGTGTGGGCCTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
* * *
40843345 CAATATAGTAGCAATGTGGGCCTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
40843373 CAATACAGTAATCAGT
1 CAATACAGTAA-CAGT
40843389 ACAATGCAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.06
28 55 0.89
29 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (28 bp):
CAATACAGTAACAGTGTGGGCCTTAGCC
Found at i:40843767 original size:27 final size:27
Alignment explanation
Indices: 40843737--40843922 Score: 268
Period size: 27 Copynumber: 6.9 Consensus size: 27
40843727 TATAACAGTT
* * *
40843737 ATTTTACCCTAT-AAGGGTATTTCTATC
1 ATTTTACCCT-TCGAGGGTATTTCGATA
*
40843764 ATTTTACCCTTCGAGGGTATTTC-AGTC
1 ATTTTACCCTTCGAGGGTATTTCGA-TA
*
40843791 ATTTTACCTTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
40843818 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
40843845 ATTTTACCCTTCGAAGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
*
40843872 ATTTTACCCTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
40843899 ATTTTACCCTTCGAGGGTATTTCG
1 ATTTTACCCTTCGAGGGTATTTCG
40843923 GTCCCATTAA
Statistics
Matches: 146, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
26 2 0.01
27 143 0.98
28 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:40846861 original size:24 final size:24
Alignment explanation
Indices: 40846766--40846899 Score: 115
Period size: 24 Copynumber: 5.6 Consensus size: 24
40846756 CCCCTCGAGG
* *
40846766 TTAAATGATTGATTTATCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * * * *
40846790 GTAAGTGATTGATTTGTCCGAGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * *
40846814 GTAAATGACTAATTTGTTTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
40846838 TTAAATGACTGATTTGTCTATGAT
1 TTAAATGACTGATTTGTCTGTGAT
*** *
40846862 TGGTATGACTGATTTGTCTGTGAA
1 TTAAATGACTGATTTGTCTGTGAT
**
40846886 TTGTATGACTGATT
1 TTAAATGACTGATT
40846900 CTGAGCATGG
Statistics
Matches: 89, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.45
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:40847127 original size:32 final size:32
Alignment explanation
Indices: 40847069--40847176 Score: 85
Period size: 32 Copynumber: 3.4 Consensus size: 32
40847059 TTGCTGTTAT
* * **
40847069 GCTACTAATGGCTTTGTGCCGGTCATATTACC
1 GCTACTGATGGCTGTGTGCCAATCATATTACC
* * ** *
40847101 GTTACTG-TAGGCTGTGTGCCTATCATAACACT
1 GCTACTGAT-GGCTGTGTGCCAATCATATTACC
* *
40847133 GCTACTGATGGCTTTGTGCCAATCATATTACT
1 GCTACTGATGGCTGTGTGCCAATCATATTACC
*
40847165 G-TACTTATGGCT
1 GCTACTGATGGCT
40847177 AGTAGTCATT
Statistics
Matches: 60, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
31 11 0.18
32 48 0.80
33 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (32 bp):
GCTACTGATGGCTGTGTGCCAATCATATTACC
Found at i:40850458 original size:39 final size:40
Alignment explanation
Indices: 40850406--40850614 Score: 271
Period size: 40 Copynumber: 5.3 Consensus size: 40
40850396 GGACTAAGAT
* *
40850406 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGATATTAAA-TCCGGGTTAAGTC
* *
40850445 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
*
40850485 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* *
40850525 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* * * * * *
40850565 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
40850604 CCGAAGGCATT
1 CCGAAGGCATT
40850615 TGAACGAGAA
Statistics
Matches: 158, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 67 0.42
40 91 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
Found at i:40850578 original size:119 final size:120
Alignment explanation
Indices: 40850353--40850614 Score: 300
Period size: 119 Copynumber: 2.2 Consensus size: 120
40850343 TTGAATGCTG
* *
40850353 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* * *
40850417 TGTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGATATTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCATTGTGCGAGATACTAAA
* * * * **
40850472 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
40850535 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAG-CCCGAAGGCCATTGTGCGAGATACTAAA
* *
40850591 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
40850615 TGAACGAGAA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
118 1 0.01
119 102 0.85
120 17 0.14
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCATTGTGCGAGATACTAAA
Found at i:40850634 original size:79 final size:80
Alignment explanation
Indices: 40850406--40850649 Score: 221
Period size: 79 Copynumber: 3.1 Consensus size: 80
40850396 GGACTAAGAT
* * * * * * ** *
40850406 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAG-ATAT
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTA-AC
40850468 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** * *
40850485 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAACTA
*
40850550 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
40850565 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-AAGCT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAA-CT
* *
40850628 ATATCC-GGTTAAATC
65 AAATCCGGGTTAAGTC
40850643 CCGAAGG
1 CCGAAGG
40850650 TACGTGATTT
Statistics
Matches: 141, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 15 0.11
79 76 0.54
80 50 0.35
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAACTA
AATCCGGGTTAAGTC
Found at i:40850634 original size:119 final size:119
Alignment explanation
Indices: 40850354--40850649 Score: 273
Period size: 119 Copynumber: 2.5 Consensus size: 119
40850344 TGAATGCTGT
* ** * **
40850354 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAA-TATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGT-AACTATATCCGGGTTAAG-TCCCGAAGGCAT
* * * *
40850416 TTGTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCTTTGTGCGAGATATTAAAT
63 TCGTGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCATTGTGCGAGATACTAAAA
* ** * * *
40850473 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAACTATATCCGGGTTAAGTCCCGAAGGCATTCG
* * * * *
40850538 TGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAA
66 TGCGAGATA-CAAATTCCGGGTTAAG-CCCGAAGGCCATTGTGCGAGATACTAAAA
* * *
40850592 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-AAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAA-CTATATCCGGGTTAAGTCCCGAAGG
40850650 TACGTGATTT
Statistics
Matches: 146, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
118 18 0.12
119 111 0.76
120 17 0.12
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTAACTATATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCGAAGGCCATTGTGCGAGATACTAAAA
Found at i:40858008 original size:40 final size:40
Alignment explanation
Indices: 40857977--40858186 Score: 271
Period size: 40 Copynumber: 5.3 Consensus size: 40
40857967 GGACTAAGAT
* * *
40857977 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATTAAA-TCCGGGTTAAGTC
* *
40858017 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
*
40858057 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* *
40858097 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* * * * * *
40858137 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
40858176 CCGAAGGCATT
1 CCGAAGGCATT
40858187 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.22
40 120 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
Found at i:40858140 original size:120 final size:120
Alignment explanation
Indices: 40857924--40858186 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
40857914 TTGAATGCTG
* *
40857924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* * *
40857988 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATATTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
40858044 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
40858107 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
40858163 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
40858187 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 37 0.31
120 74 0.62
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:40860339 original size:20 final size:19
Alignment explanation
Indices: 40860310--40860366 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
40860300 AGCTAATAAC
40860310 GAGCTCAATGAGCTGAATT
1 GAGCTCAATGAGCTGAATT
* *
40860329 GAGCTCGAATGAGCTTACTT
1 GAGCTC-AATGAGCTGAATT
40860349 GAGCTCAAGTGAGCTGAA
1 GAGCTCAA-TGAGCTGAA
40860367 CCACATGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 8 0.25
20 24 0.75
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (19 bp):
GAGCTCAATGAGCTGAATT
Found at i:40862318 original size:21 final size:21
Alignment explanation
Indices: 40862294--40862337 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
40862284 GAATCTTTAG
*
40862294 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
40862315 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
40862336 TA
1 TA
40862338 ATTAGGTCGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:40867915 original size:38 final size:38
Alignment explanation
Indices: 40867801--40867936 Score: 128
Period size: 40 Copynumber: 3.5 Consensus size: 38
40867791 GTGCATTCAA
* * * *
40867801 GGTACCAAAGTACAAACAAGGGCACATATGTATACTCAAG
1 GGTACCGAAGTACAAACAA--GCACATATGTACAATCAGG
* *** * *
40867841 GATACCGAAGTACAATTAGGGGCACGTATGTGCAATCAGG
1 GGTACCGAAGTACAA--ACAAGCACATATGTACAATCAGG
*
40867881 GGTATCGAAGTACAAACAAGCACATATGTACAATCAGG
1 GGTACCGAAGTACAAACAAGCACATATGTACAATCAGG
*
40867919 GGTACCAAAGTACAAACA
1 GGTACCGAAGTACAAACA
40867937 GGGACATGTA
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
38 34 0.45
40 40 0.53
42 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (38 bp):
GGTACCGAAGTACAAACAAGCACATATGTACAATCAGG
Found at i:40867930 original size:78 final size:79
Alignment explanation
Indices: 40867808--40867956 Score: 201
Period size: 78 Copynumber: 1.9 Consensus size: 79
40867798 CAAGGTACCA
* * * ** *
40867808 AAGTACAAACAAGGGCACATATGTATACTCAAGGATACCGAAGTACAATTAGGGGCACGTATGTG
1 AAGTACAAACAA-GGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACACGTATGTG
40867873 CAATCAGGGGTATCG
65 CAATCAGGGGTATCG
* * *
40867888 AAGTACAAACAA-GCACATATGTACAATCAGGGGTACCAAAGTACAAACAGGGACATGTATGTGC
1 AAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACACGTATGTGC
40867952 AATCA
66 AATCA
40867957 TCAATAATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
78 48 0.80
80 12 0.20
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.19
Consensus pattern (79 bp):
AAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACACGTATGTGC
AATCAGGGGTATCG
Found at i:40875493 original size:56 final size:51
Alignment explanation
Indices: 40875425--40875613 Score: 211
Period size: 50 Copynumber: 3.6 Consensus size: 51
40875415 ATGATATCCT
* **
40875425 ATGTAATACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGCTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCA--ACCGA-G--ATGAGAGCTCCC
*
40875481 ATGTAAGACCATGTCTGGGACATGGCATTGGC-ACCGAGATGAGAGGTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGCTCCC
* * * *
40875531 CTGTAAGACCATGTCTGGGACATGGCATGGGC-ACCGATATGAGAACTCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGCTCCC
* * * *
40875581 ATGTAAGGCCATATCTGGGATATGACATTGGCA
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCA
40875614 GTACAGTATA
Statistics
Matches: 117, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 82 0.70
52 1 0.01
53 3 0.03
56 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (51 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCAACCGAGATGAGAGCTCCC
Found at i:40880210 original size:41 final size:41
Alignment explanation
Indices: 40880165--40880247 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
40880155 TCATATAAGT
* *
40880165 AGCATTATGTAGCTACATTCTAACCCACAACCCGTGTGAGC
1 AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
* *
40880206 AGCATCATGTAGCTACATTCCAACCCACAGCTCGTGTGAGC
1 AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
40880247 A
1 A
40880248 TACCGATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (41 bp):
AGCATCATGTAGCTACATTCCAACCCACAACCCGTGTGAGC
Found at i:40880262 original size:25 final size:25
Alignment explanation
Indices: 40880232--40880325 Score: 107
Period size: 25 Copynumber: 3.8 Consensus size: 25
40880222 ATTCCAACCC
*
40880232 ACAGCTCGTGTGAGCATACCGATTT
1 ACAGCTCGTGTGAGCATACTGATTT
* * * * *
40880257 ATAGCTCATGAGAGCATACTAATCT
1 ACAGCTCGTGTGAGCATACTGATTT
* *
40880282 ACAGCTCGAGTGAGCATACTGATTC
1 ACAGCTCGTGTGAGCATACTGATTT
*
40880307 ACAGCTCGTATGAGCATAC
1 ACAGCTCGTGTGAGCATAC
40880326 ATGTACATGA
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACTGATTT
Found at i:40889919 original size:28 final size:28
Alignment explanation
Indices: 40889856--40890037 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
40889846 ATATTAAGTC
* *
40889856 CGCACACTCAGTGTTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
40889883 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40889911 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
40889939 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
40889967 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
40889995 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
40890024 CGCACACTTAGTGC
1 CGCACACTTAGTGC
40890038 CAATCTCATG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 103 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:40893539 original size:5 final size:5
Alignment explanation
Indices: 40893529--40893554 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
40893519 AGTTGAGAAA
40893529 TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT T
40893555 CTTCTTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:40900667 original size:20 final size:20
Alignment explanation
Indices: 40900644--40900704 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
40900634 AGTTTATCTG
40900644 CATTACTGGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
** *
40900664 CATTACTGGCAGCTTGTCTA
1 CATTACTGGTGGCTTGTCCA
* *
40900684 CAATACTAGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
40900704 C
1 C
40900705 TTTTATGGCA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.33
Consensus pattern (20 bp):
CATTACTGGTGGCTTGTCCA
Found at i:40900696 original size:40 final size:39
Alignment explanation
Indices: 40900637--40900745 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
40900627 TACTGGTAGT
* * *
40900637 TTATCTGCATTACTGGTGGCTTGTCCACATTACTGGCAGC
1 TTATCTACAATACTAGTGGCTTGTCCACATTA-TGGCAGC
* * *
40900677 TTGTCTACAATACTAGTGGCTTGTCCACTTTTATGGCAGT
1 TTATCTACAATACTAGTGGCTTGTCCAC-ATTATGGCAGC
* * * *
40900717 TTATCTTCATTACTCGTGGCTTATCCACA
1 TTATCTACAATACTAGTGGCTTGTCCACA
40900746 AACTGGTGTG
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
40 53 0.95
41 3 0.05
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (39 bp):
TTATCTACAATACTAGTGGCTTGTCCACATTATGGCAGC
Found at i:40901121 original size:21 final size:20
Alignment explanation
Indices: 40901084--40901122 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
40901074 AGCTAAATTT
*
40901084 TAATAATTTTTCTTGGACCA
1 TAATAATTTTTATTGGACCA
40901104 TAATAATTTTTATATGGAC
1 TAATAATTTTTAT-TGGAC
40901123 TGTGGCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATAATTTTTATTGGACCA
Found at i:40905983 original size:21 final size:21
Alignment explanation
Indices: 40905954--40906012 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
40905944 GGAAGAATAT
*
40905954 GACACACGCCCATGTGAAGGC
1 GACAAACGCCCATGTGAAGGC
* * * *
40905975 TACAAACGCCCTTATGAAGGG
1 GACAAACGCCCATGTGAAGGC
*
40905996 GACAAACGCCCGTGTGA
1 GACAAACGCCCATGTGA
40906013 GCAGCTCGTG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.27, T:0.14
Consensus pattern (21 bp):
GACAAACGCCCATGTGAAGGC
Found at i:40906254 original size:30 final size:30
Alignment explanation
Indices: 40906219--40906301 Score: 114
Period size: 30 Copynumber: 2.8 Consensus size: 30
40906209 TTCCCAATTT
*
40906219 CACACGGCCGTGTGAACCACCCGTGTGCGA
1 CACACGACCGTGTGAACCACCCGTGTGCGA
*
40906249 CACACGACCGTGTGAACCACCCATGTGCGA
1 CACACGACCGTGTGAACCACCCGTGTGCGA
* * *
40906279 CACATGCCCGTGTG-GCCACCCGT
1 CACACGACCGTGTGAACCACCCGT
40906302 ATGATCACGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 7 0.15
30 40 0.85
ACGTcount: A:0.20, C:0.39, G:0.27, T:0.14
Consensus pattern (30 bp):
CACACGACCGTGTGAACCACCCGTGTGCGA
Found at i:40909298 original size:285 final size:286
Alignment explanation
Indices: 40908775--40909348 Score: 1026
Period size: 285 Copynumber: 2.0 Consensus size: 286
40908765 ACTATTTGCC
40908775 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
1 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
* *
40908840 CTATTTAAGAGTGTTCGTGATTTTTCTGTACATCCGTGACAACCTCACACTCGATTTGGTTCCTA
66 CCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCT-ACACTCGATTTGGTTCCTA
* * *
40908905 ACAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAAAACTGCACTACAACAAATTGACTAATT
130 AAAGAAAGCTTTATAATGGAACTTC-AAAAAAAAAAAAAACAGCACTACAACAAATTCACTAATT
* * *
40908970 TTACAGATCTCTAGGGGTAGTCTATCAAATGAGGGGTTTGGGGAAAAATTTTGTACAACAATGTT
194 TTACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTT
40909035 GTTCCAAATCAATTTATTTTGTTTGGTT
259 GTTCCAAATCAATTTATTTTGTTTGGTT
40909063 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTTGTATAATT
1 TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCA-TTGTATAATT
40909128 GCCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCT-CACTCGATTTGGTTCCTA
65 GCCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCTACACTCGATTTGGTTCCTA
*
40909192 AAAGAAAGCTTTATAATGGAACTTC-AAAAAAAAAAAAACAGCACTACATCAAATTCACTAATTT
130 AAAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAAACAGCACTACAACAAATTCACTAATTT
40909256 TACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTTG
195 TACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTTG
40909321 TTCCAAATCAATTTATTTTGTTTGGTT
260 TTCCAAATCAATTTATTTTGTTTGGTT
40909348 T
1 T
40909349 TGGCTTTGGC
Statistics
Matches: 276, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
285 126 0.46
287 42 0.15
288 54 0.20
289 54 0.20
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.34
Consensus pattern (286 bp):
TGTTCAATAGATGAGTTATTTAATATCCTAGAATAAAAAAATCATTAAAAATCATTGTATAATTG
CCATTTAAGAGTGTTCATGATTTTTCTGTACATCCGTGACAACCTACACTCGATTTGGTTCCTAA
AAGAAAGCTTTATAATGGAACTTCAAAAAAAAAAAAAACAGCACTACAACAAATTCACTAATTTT
ACAGATCTCTAGGGCTAGGCTATCAAATGAGGGGTTTGGGGAAAAAATTTGTACAACAATGTTGT
TCCAAATCAATTTATTTTGTTTGGTT
Found at i:40916337 original size:19 final size:19
Alignment explanation
Indices: 40916309--40916346 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
40916299 GGGATATATT
*
40916309 TTTAGGTAGATAAATCTTA
1 TTTAGATAGATAAATCTTA
40916328 TTTAGATAGATAAATCTTA
1 TTTAGATAGATAAATCTTA
40916347 GAATAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (19 bp):
TTTAGATAGATAAATCTTA
Found at i:40916416 original size:41 final size:41
Alignment explanation
Indices: 40916371--40916465 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
40916361 AGATATTCTA
*
40916371 GGAA-TATTTTATTTTATCTTTTAGTAATTTATTAGAATAAG
1 GGAATTATTTT-TCTTATCTTTTAGTAATTTATTAGAATAAG
* *
40916412 GGAATTATTTTTCTTATGTTTTAGTAGTTTATTAGAATAAG
1 GGAATTATTTTTCTTATCTTTTAGTAATTTATTAGAATAAG
40916453 GGAATTATTTTTC
1 GGAATTATTTTTC
40916466 CAATTAGGTT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 44 0.88
42 6 0.12
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.52
Consensus pattern (41 bp):
GGAATTATTTTTCTTATCTTTTAGTAATTTATTAGAATAAG
Found at i:40923810 original size:13 final size:13
Alignment explanation
Indices: 40923792--40923818 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
40923782 TTATATAAAG
40923792 AAAGAGCCTTGTT
1 AAAGAGCCTTGTT
40923805 AAAGAGCCTTGTT
1 AAAGAGCCTTGTT
40923818 A
1 A
40923819 TTATAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
AAAGAGCCTTGTT
Found at i:40928595 original size:18 final size:20
Alignment explanation
Indices: 40928572--40928609 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40928562 ATAAAAATAT
40928572 CAAATA-TATAT-AAATTCA
1 CAAATATTATATAAAATTCA
40928590 CAAATATTATATAAAATTCA
1 CAAATATTATATAAAATTCA
40928610 AGACATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
CAAATATTATATAAAATTCA
Found at i:40935261 original size:91 final size:89
Alignment explanation
Indices: 40935109--40935299 Score: 276
Period size: 91 Copynumber: 2.1 Consensus size: 89
40935099 CTTAAGGGTG
* *
40935109 TAAAAA-GCCCTCAAAAATTTTCAAAAAACGCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
1 TAAAAAGGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTG
* *
40935173 GGTACTTGAACTTTCAAAATGCAT
66 GGTACTTGAACTATCAAAAAGCAT
** *
40935197 TAAAAAGGCCCTCAAACTTTTTCAAAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCATTCAAT
1 TAAAAAGGCCCTCAAAAATTTTC--AAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAAT
40935262 TGGGTACTTGAACTATCAAAAAGCAT
64 TGGGTACTTGAACTATCAAAAAGCAT
* *
40935288 CAAAAAGACCCT
1 TAAAAAGGCCCT
40935300 TTAACCATTA
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
88 6 0.07
89 14 0.15
91 71 0.78
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (89 bp):
TAAAAAGGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTG
GGTACTTGAACTATCAAAAAGCAT
Found at i:40935947 original size:94 final size:96
Alignment explanation
Indices: 40935760--40935951 Score: 280
Period size: 97 Copynumber: 2.0 Consensus size: 96
40935750 TAACGGTCAA
* * ** *
40935760 AGGGTCTTTTTGATGCATTTTGGCAGTTCAAATATCCAATTAAGTGTAAAAAAAAAAAAAAGAGT
1 AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTG-AAAAAAAAAAAAAAGAGT
*
40935825 AGGGGCTTAATTGCTTTTTTTGAAAAAGTTTG
65 AGAGGCTTAATTGCTTTTTTTGAAAAAGTTTG
* * *
40935857 AGGGACTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG-CAAAAAAAAAAAA-AGTA
1 AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTGAAAAAAAAAAAAAAGAGTA
40935920 GAGGCTTAATTGCTTTTTTTGAAAAAGTTTG
66 GAGGCTTAATTGCTTTTTTTGAAAAAGTTTG
40935951 A
1 A
40935952 AAGCTTTTTA
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
94 35 0.41
95 12 0.14
97 39 0.45
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (96 bp):
AGGGACTTTTTAATGCATTTTGAAAGTTCAAATACCCAATTAAGTGAAAAAAAAAAAAAAGAGTA
GAGGCTTAATTGCTTTTTTTGAAAAAGTTTG
Found at i:40938716 original size:16 final size:17
Alignment explanation
Indices: 40938689--40938736 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
40938679 AATGTACAAC
* *
40938689 ATTATAATATAAATCAA
1 ATTATTATATAAATAAA
*
40938706 A-TATTATATAATTTAAA
1 ATTATTATATAA-ATAAA
40938723 ATTATTATATAAAT
1 ATTATTATATAAAT
40938737 GTATTTTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.36
17 6 0.24
18 10 0.40
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTATATAAATAAA
Found at i:40938733 original size:34 final size:36
Alignment explanation
Indices: 40938670--40938736 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
40938660 AATTTATTGT
40938670 ATATAATATAATGTACAACATTATAATATAAATCAA
1 ATATAATATAATGTACAACATTATAATATAAATCAA
* * *
40938706 ATATTATATAATTTA-AA-ATTATTATATAAAT
1 ATATAATATAATGTACAACATTATAATATAAAT
40938737 GTATTTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 13 0.46
35 2 0.07
36 13 0.46
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (36 bp):
ATATAATATAATGTACAACATTATAATATAAATCAA
Found at i:40940694 original size:9 final size:9
Alignment explanation
Indices: 40940680--40940710 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
40940670 GTTAAACGAA
40940680 TCGAGTTAT
1 TCGAGTTAT
*
40940689 TCGAGTTAA
1 TCGAGTTAT
40940698 TCGAGTTAT
1 TCGAGTTAT
40940707 TCGA
1 TCGA
40940711 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:40948895 original size:42 final size:42
Alignment explanation
Indices: 40948798--40948918 Score: 109
Period size: 42 Copynumber: 2.9 Consensus size: 42
40948788 GCACATAAGT
* * * *
40948798 GCTAAACAGG-AACCCATAAGGTTTGAACAGAAGCTTATAAGA
1 GCTAAA-AGGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGA
* * * * *
40948840 GCTGAACGAAAACCTATAAGGGTTAAACTGAAGCTCAAAAGA
1 GCTAAAAGGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGA
* * * *
40948882 GCTAAAAGGAAACCCCTTAGGGTTAAACGGAAACTCA
1 GCTAAAAGGAAACCCATAAGGGTTAAACAGAAGCTCA
40948919 TATGAGTTAA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
41 1 0.02
42 60 0.98
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
GCTAAAAGGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGA
Found at i:40953630 original size:27 final size:28
Alignment explanation
Indices: 40953583--40953636 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
40953573 CAAAATTCAT
*
40953583 ACTTTAATTATAAAATAATT-AATTTTC
1 ACTTAAATTATAAAATAATTAAATTTTC
*
40953610 ACTTAAATTATTAACAT-ATTAAATTTT
1 ACTTAAATTA-TAAAATAATTAAATTTT
40953637 AATTATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (28 bp):
ACTTAAATTATAAAATAATTAAATTTTC
Found at i:40965729 original size:36 final size:36
Alignment explanation
Indices: 40965682--40965753 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
40965672 CCTTTTCAAG
40965682 TTCGATTCCTTTATGACAGACCTTATGCCCTAGGAC
1 TTCGATTCCTTTATGACAGACCTTATGCCCTAGGAC
40965718 TTCGATTCCTTTATGACAGACCTTATGCCCTAGGAC
1 TTCGATTCCTTTATGACAGACCTTATGCCCTAGGAC
40965754 AATGCCTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (36 bp):
TTCGATTCCTTTATGACAGACCTTATGCCCTAGGAC
Found at i:40968838 original size:15 final size:15
Alignment explanation
Indices: 40968818--40968847 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
40968808 ATGCCTCTAC
40968818 ACTGATAACTAGTAA
1 ACTGATAACTAGTAA
40968833 ACTGATAACTAGTAA
1 ACTGATAACTAGTAA
40968848 CAGACCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (15 bp):
ACTGATAACTAGTAA
Found at i:40968898 original size:22 final size:20
Alignment explanation
Indices: 40968868--40968917 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
40968858 GTGATCACGG
40968868 AATAAAAAAATTAACAACTAAA
1 AATAAAAAAATT-ACAA-TAAA
*
40968890 AATACAAAAATTACAATAAA
1 AATAAAAAAATTACAATAAA
40968910 AACTAAAA
1 AA-TAAAA
40968918 TTGCCAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.24
21 8 0.32
22 11 0.44
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
AATAAAAAAATTACAATAAA
Found at i:40971608 original size:37 final size:37
Alignment explanation
Indices: 40971558--40971636 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
40971548 TTATTACGAA
*
40971558 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTTATCGG
* *
40971595 GTCTTGCCCGGACAAAATTCCCACACGTAGTTATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTTATCGG
40971632 GTCTT
1 GTCTT
40971637 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTTATCGG
Found at i:40971833 original size:47 final size:47
Alignment explanation
Indices: 40971755--40972290 Score: 901
Period size: 47 Copynumber: 11.4 Consensus size: 47
40971745 CCCTTCGGGA
* * * * * * *
40971755 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
40971802 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
40971849 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
40971896 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
40971943 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
40971990 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
40972037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
40972084 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
40972131 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
40972178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
40972225 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
40972272 CTTATCACATATATACACT
1 CTTATCACATATATACACT
40972291 GTCTTGGCTG
Statistics
Matches: 462, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 462 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:40975816 original size:20 final size:20
Alignment explanation
Indices: 40975773--40975818 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
40975763 ACGACTGTGC
*
40975773 CCCTGTATACACTCCGGTGC
1 CCCTGTATACACTCCGGTGA
**
40975793 CCCTGTATACACTTTGGTGA
1 CCCTGTATACACTCCGGTGA
40975813 CCCTGT
1 CCCTGT
40975819 TTGCACGACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.35, G:0.20, T:0.30
Consensus pattern (20 bp):
CCCTGTATACACTCCGGTGA
Found at i:40975833 original size:40 final size:40
Alignment explanation
Indices: 40975789--40975919 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
40975779 ATACACTCCG
* *
40975789 GTGCCCCTGTATACACTTTGGTGACCCTGTTTGCACGACT
1 GTGCCCCTGTTTACACTTTGGTGTCCCTGTTTGCACGACT
* *
40975829 GTGCCCCT-TTTCACACTTTGGTGTCCCTATTTGCACGTCT
1 GTGCCCCTGTTT-ACACTTTGGTGTCCCTGTTTGCACGACT
* * * * * **
40975869 ATGCCTCTGTTTGCTCTTCGGTGTCCCTGAATGCACGTA-T
1 GTGCCCCTGTTTACACTTTGGTGTCCCTGTTTGCACG-ACT
40975909 GTGCCCCTGTT
1 GTGCCCCTGTT
40975920 CTGCATCTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.03
40 68 0.93
41 3 0.04
ACGTcount: A:0.11, C:0.31, G:0.21, T:0.37
Consensus pattern (40 bp):
GTGCCCCTGTTTACACTTTGGTGTCCCTGTTTGCACGACT
Found at i:40975836 original size:20 final size:20
Alignment explanation
Indices: 40975762--40975836 Score: 62
Period size: 20 Copynumber: 3.8 Consensus size: 20
40975752 CCCCTATTTG
40975762 CACGACTGTGCCCCTGTATA
1 CACGACTGTGCCCCTGTATA
** *
40975782 CACTCCGGTGCCCCTGTATA
1 CACGACTGTGCCCCTGTATA
** * * *
40975802 CAC-TTTGGTGACCCTGTTTG
1 CACGACT-GTGCCCCTGTATA
40975822 CACGACTGTGCCCCT
1 CACGACTGTGCCCCT
40975837 TTTCACACTT
Statistics
Matches: 41, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
20 40 0.98
21 1 0.02
ACGTcount: A:0.15, C:0.36, G:0.21, T:0.28
Consensus pattern (20 bp):
CACGACTGTGCCCCTGTATA
Found at i:40977943 original size:62 final size:60
Alignment explanation
Indices: 40977854--40977968 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 60
40977844 CCAAAAATAA
* * * * *
40977854 TATTATTTTAATAATTTAGTATTAAATTTAATTTAATGTTTAT-CTTATAAATAAACATTC
1 TATTATTTTAATAATTTAATA-TAAAATTAATATAATATTTATCCTGATAAATAAACATTC
40977914 TATTATTTTAATAAGATTTAATATAAAATTAATATAATATTTATCCTGATAAATA
1 TATTATTTTAAT-A-ATTTAATATAAAATTAATATAATATTTATCCTGATAAATA
40977969 TTATATTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
60 12 0.26
61 19 0.40
62 16 0.34
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (60 bp):
TATTATTTTAATAATTTAATATAAAATTAATATAATATTTATCCTGATAAATAAACATTC
Found at i:40980515 original size:9 final size:9
Alignment explanation
Indices: 40980501--40980585 Score: 125
Period size: 9 Copynumber: 9.4 Consensus size: 9
40980491 TTTGGTTAAA
40980501 AATTAACCG
1 AATTAACCG
*
40980510 AATTAACCA
1 AATTAACCG
*
40980519 AATTACCCG
1 AATTAACCG
40980528 AATTAACCG
1 AATTAACCG
*
40980537 AATTACCCG
1 AATTAACCG
40980546 AATTAACCG
1 AATTAACCG
*
40980555 AATTATCCG
1 AATTAACCG
40980564 AATTAACCG
1 AATTAACCG
*
40980573 AATTAACCA
1 AATTAACCG
40980582 AATT
1 AATT
40980586 GAATCACTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 67 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:40992433 original size:101 final size:101
Alignment explanation
Indices: 40992256--40992439 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 101
40992246 AGTTGCTAGG
* * *
40992256 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGAAAGGTCACATGTATAGTAC
40992321 TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
66 TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
* * *
40992357 TCACGTGTGTAGTACTA-GTGTAGGCTACTACGTGTATCG-GATGAAAATGGTCACATGTATAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATG-AAA-GGTCACATGTATAGT
**
40992420 ACTATGTGTAGGCTACTATG
64 ACTATGTCCAGGCTACTATG
40992440 TGAATCGAGT
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
99 3 0.04
100 22 0.30
101 48 0.66
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTCTATCGAAATGAAAGGTCACATGTATAGTAC
TATGTCCAGGCTACTATGCGTACCGGATAGCTTCAA
Found at i:41005286 original size:68 final size:71
Alignment explanation
Indices: 41005190--41005319 Score: 185
Period size: 68 Copynumber: 1.9 Consensus size: 71
41005180 TTTTAATAGT
* *
41005190 TTAATATTAAATTTAATTTAATACTTATCT-TAATAATATTTT-ATTA-ATTTAATATTAAAGTG
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
41005252 ATTATC
66 ATTATC
** * *
41005258 TTAATATTAAATTAAATTTAATGTTTATCTATTATATTATTTTAATAAGATTTAATATTAAA
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAA
41005320 TTTAATCCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
68 27 0.51
69 10 0.19
70 3 0.06
71 13 0.25
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (71 bp):
TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
ATTATC
Found at i:41006130 original size:13 final size:13
Alignment explanation
Indices: 41006112--41006136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41006102 TTTTTGAGTC
41006112 AAAAGTGCTTTTG
1 AAAAGTGCTTTTG
41006125 AAAAGTGCTTTT
1 AAAAGTGCTTTT
41006137 CAACCCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
AAAAGTGCTTTTG
Found at i:41016760 original size:50 final size:48
Alignment explanation
Indices: 41016641--41016864 Score: 145
Period size: 50 Copynumber: 4.5 Consensus size: 48
41016631 ATGCCAAATT
* **
41016641 CATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGA-GCTTCTAATACTGCCAATGC
* * * *
41016690 CATATCCCAAATATGGTCTTACATGGGA-CTTCTAATATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATA-C--TGCCAATGC
* ** * * *
41016740 CATGTCCTAGACATGGTCTTACGGGGGA-CCTCTCAT-CTTG---GTGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATAC-TGCCAATGC
* *
41016784 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGAGCT-TC-TAA--T--A--CTGCCAATGC
*
41016840 CATGTCCCAGACGTGGTCTTACATG
1 CATGTCCCAGACATGGTCTTACATG
41016865 AGATCTCTTT
Statistics
Matches: 134, Mismatches: 25, Indels: 25
0.73 0.14 0.14
Matches are distributed among these distances:
44 28 0.21
45 1 0.01
46 2 0.01
47 10 0.07
48 2 0.01
49 26 0.19
50 36 0.27
53 2 0.01
56 27 0.20
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACATGGGAGCTTCTAATACTGCCAATGC
Found at i:41016960 original size:63 final size:63
Alignment explanation
Indices: 41016882--41017013 Score: 264
Period size: 63 Copynumber: 2.1 Consensus size: 63
41016872 TTTACCCAAA
41016882 TGTCATGACATTTGTATCCAATACACTCCTAATGTTTCAACGGGGCTTTTATCACTGATTCTC
1 TGTCATGACATTTGTATCCAATACACTCCTAATGTTTCAACGGGGCTTTTATCACTGATTCTC
41016945 TGTCATGACATTTGTATCCAATACACTCCTAATGTTTCAACGGGGCTTTTATCACTGATTCTC
1 TGTCATGACATTTGTATCCAATACACTCCTAATGTTTCAACGGGGCTTTTATCACTGATTCTC
41017008 TGTCAT
1 TGTCAT
41017014 CTCATGCTTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 69 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (63 bp):
TGTCATGACATTTGTATCCAATACACTCCTAATGTTTCAACGGGGCTTTTATCACTGATTCTC
Found at i:41019010 original size:138 final size:138
Alignment explanation
Indices: 41018851--41019135 Score: 471
Period size: 138 Copynumber: 2.1 Consensus size: 138
41018841 CAAGAAGATA
*
41018851 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATATAT
1 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
* * * *
41018916 TAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTT
66 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
*
41018981 TTGGAAAG
131 TCGGAAAG
** * *
41018989 AATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
1 AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
*
41019054 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGGAAATTAATATTCTT
66 TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
41019119 TCGGAAAG
131 TCGGAAAG
41019127 AATATAATT
1 AATATAATT
41019136 CATTTTTCTA
Statistics
Matches: 136, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 136 1.00
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.39
Consensus pattern (138 bp):
AATATAATTAAGATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATATAT
TAATATAAAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGAAATGAAAATTAATATTCTT
TCGGAAAG
Found at i:41021735 original size:27 final size:27
Alignment explanation
Indices: 41021696--41021809 Score: 95
Period size: 27 Copynumber: 4.2 Consensus size: 27
41021686 GTATAACCTT
*
41021696 GTGTTTAGTGTCTCGATGGACTACCCC
1 GTGTTTAGCGTCTCGATGGACTACCCC
* *
41021723 GTGTTTAGCGTCTCGGTGGACTACCTC
1 GTGTTTAGCGTCTCGATGGACTACCCC
* * * ****
41021750 ATGTTTA-CTATTTCGATGGACTATTTT
1 GTGTTTAGC-GTCTCGATGGACTACCCC
* * *
41021777 GTGTTCAGTGTCTCGATAGACTACCCC
1 GTGTTTAGCGTCTCGATGGACTACCCC
41021804 GTGTTT
1 GTGTTT
41021810 GTTGTCCTAG
Statistics
Matches: 64, Mismatches: 21, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.39
Consensus pattern (27 bp):
GTGTTTAGCGTCTCGATGGACTACCCC
Found at i:41032497 original size:14 final size:14
Alignment explanation
Indices: 41032478--41032507 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
41032468 ATCCCTAGAC
41032478 AAATAGACAAGTGG
1 AAATAGACAAGTGG
41032492 AAATAGACAAGTGG
1 AAATAGACAAGTGG
41032506 AA
1 AA
41032508 GTCTCTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.27, T:0.13
Consensus pattern (14 bp):
AAATAGACAAGTGG
Found at i:41034553 original size:3 final size:3
Alignment explanation
Indices: 41034547--41034593 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
41034537 GTTGGAGCCA
41034547 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
41034594 AGCCACTGCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:41040703 original size:11 final size:11
Alignment explanation
Indices: 41040689--41040713 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
41040679 ATTTTTTTAG
41040689 AAAAATCCCAA
1 AAAAATCCCAA
41040700 AAAAATCCCAA
1 AAAAATCCCAA
41040711 AAA
1 AAA
41040714 TCCCTTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAATCCCAA
Found at i:41053950 original size:40 final size:39
Alignment explanation
Indices: 41053886--41054097 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
41053876 TCTTCGGAAT
* *
41053886 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
41053925 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
41053965 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
41054005 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
41054045 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
41054085 TTAGCCCGGATAT
1 TTAGCCCGGATAT
41054098 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:41054013 original size:80 final size:80
Alignment explanation
Indices: 41053886--41054097 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
41053876 TCTTCGGAAT
* * * * *
41053886 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
41053950 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
41053965 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
41054030 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
41054045 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
41054098 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:41056033 original size:21 final size:21
Alignment explanation
Indices: 41055983--41056034 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
41055973 TAGCTTATTA
*
41055983 GCATGATTAAATTGTCTTAAT
1 GCATGATTTAATTGTCTTAAT
41056004 GCATG-TTTAATGTGTCTTAA-
1 GCATGATTTAAT-TGTCTTAAT
*
41056024 GGATGATTTAA
1 GCATGATTTAA
41056035 GGCAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (21 bp):
GCATGATTTAATTGTCTTAAT
Found at i:41089278 original size:16 final size:16
Alignment explanation
Indices: 41089257--41089287 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
41089247 AATATGGAAG
41089257 TAATCTTAGAAGATTA
1 TAATCTTAGAAGATTA
41089273 TAATCTTAGAAGATT
1 TAATCTTAGAAGATT
41089288 TGATTTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.39
Consensus pattern (16 bp):
TAATCTTAGAAGATTA
Found at i:41089331 original size:16 final size:16
Alignment explanation
Indices: 41089293--41089342 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
41089283 AGATTTGATT
41089293 TTGTAATCTTAAAAGA
1 TTGTAATCTTAAAAGA
* *
41089309 TCT-TAATATTAGAAGA
1 T-TGTAATCTTAAAAGA
*
41089325 TTGTAATCTTATAAGA
1 TTGTAATCTTAAAAGA
41089341 TT
1 TT
41089343 AGATTCTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.04
16 26 0.93
17 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (16 bp):
TTGTAATCTTAAAAGA
Found at i:41089353 original size:55 final size:55
Alignment explanation
Indices: 41089257--41089360 Score: 163
Period size: 55 Copynumber: 1.9 Consensus size: 55
41089247 AATATGGAAG
* * *
41089257 TAATCTTAGAAGATTATAATCTTAGAAGATTTGATTTTGTAATCTTAAAAGATCT
1 TAATATTAGAAGATTATAATCTTAGAAGATTAGATTCTGTAATCTTAAAAGATCT
* *
41089312 TAATATTAGAAGATTGTAATCTTATAAGATTAGATTCTGTAATCTTAAA
1 TAATATTAGAAGATTATAATCTTAGAAGATTAGATTCTGTAATCTTAAA
41089361 GGTTTAAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (55 bp):
TAATATTAGAAGATTATAATCTTAGAAGATTAGATTCTGTAATCTTAAAAGATCT
Found at i:41092972 original size:7 final size:6
Alignment explanation
Indices: 41092940--41092977 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
41092930 GTTCTCTCTA
41092940 TTAGAT TTAGAT TTAGAT TTAGAT TTGAGAT TTA-AT TT
1 TTAGAT TTAGAT TTAGAT TTAGAT TT-AGAT TTAGAT TT
41092978 CTTTATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.13
6 21 0.68
7 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.53
Consensus pattern (6 bp):
TTAGAT
Found at i:41100302 original size:21 final size:22
Alignment explanation
Indices: 41100265--41100305 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
41100255 TAGAAGATCC
41100265 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
41100287 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
41100306 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Found at i:41104939 original size:27 final size:27
Alignment explanation
Indices: 41104901--41104954 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
41104891 GGAGACAAGA
41104901 AACCACAAGAGGATGAAAAATATTAAC
1 AACCACAAGAGGATGAAAAATATTAAC
41104928 AACCACAAGAGGATGAAAAATATTAAC
1 AACCACAAGAGGATGAAAAATATTAAC
41104955 CGAAAGTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (27 bp):
AACCACAAGAGGATGAAAAATATTAAC
Found at i:41106238 original size:19 final size:21
Alignment explanation
Indices: 41106214--41106267 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 21
41106204 AAAAATATGC
*
41106214 AATCTTAGAGATA-ATT-TGT
1 AATCTTAGAGATAGATTCTAT
41106233 AATCTTAGAAGATATGATTCTAT
1 AATCTTAG-AGATA-GATTCTAT
41106256 AATCTTAGAGAT
1 AATCTTAGAGAT
41106268 TTGATTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 8 0.27
20 5 0.17
22 7 0.23
23 10 0.33
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (21 bp):
AATCTTAGAGATAGATTCTAT
Found at i:41108457 original size:16 final size:16
Alignment explanation
Indices: 41108436--41108469 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
41108426 ATCTTTGAGC
41108436 TTGTGTTAAACTATGT
1 TTGTGTTAAACTATGT
*
41108452 TTGTGTTAGACTATGT
1 TTGTGTTAAACTATGT
41108468 TT
1 TT
41108470 TCAATTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.53
Consensus pattern (16 bp):
TTGTGTTAAACTATGT
Found at i:41108509 original size:9 final size:9
Alignment explanation
Indices: 41108478--41108605 Score: 80
Period size: 9 Copynumber: 13.3 Consensus size: 9
41108468 TTTCAATTGC
*
41108478 TTTATAATAA
1 TTTATAAT-T
41108488 TTTATAAATT
1 TTTAT-AATT
*
41108498 TTTATGATT
1 TTTATAATT
41108507 TTTAATTAATT
1 TTT-A-TAATT
*
41108518 TCTAATAATT
1 T-TTATAATT
41108528 TTTATAATT
1 TTTATAATT
41108537 TTT-TATATT
1 TTTATA-ATT
*
41108546 TTTATATTT
1 TTTATAATT
41108555 TTTATGAATT
1 TTTAT-AATT
* *
41108565 GTAATTAATT
1 TTTA-TAATT
* *
41108575 TATAATCATT
1 T-TTATAATT
41108585 TTTATAATT
1 TTTATAATT
41108594 TTT-TATATT
1 TTTATA-ATT
41108603 TTT
1 TTT
41108606 TTATACTTCT
Statistics
Matches: 95, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
8 4 0.04
9 44 0.46
10 33 0.35
11 13 0.14
12 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:41108570 original size:57 final size:57
Alignment explanation
Indices: 41108496--41108605 Score: 184
Period size: 57 Copynumber: 1.9 Consensus size: 57
41108486 AATTTATAAA
* * *
41108496 TTTTTATGATTTTTAATTAATTTCTAATAATTTTTATAATTTTTTATATTTTTATAT
1 TTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTTTTTATATTTTTATAT
*
41108553 TTTTTATGAATTGTAATTAATTTATAATCATTTTTATAATTTTTTATATTTTT
1 TTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTTTTTATATTTTT
41108606 TTATACTTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (57 bp):
TTTTTATGAATTGTAATTAATTTATAATAATTTTTATAATTTTTTATATTTTTATAT
Found at i:41108606 original size:9 final size:10
Alignment explanation
Indices: 41108478--41108610 Score: 80
Period size: 10 Copynumber: 13.6 Consensus size: 10
41108468 TTTCAATTGC
**
41108478 TTTATAATAA
1 TTTATAATTT
*
41108488 TTTATAAATT
1 TTTATAATTT
*
41108498 TTTATGATTT
1 TTTATAATTT
*
41108508 TTAATTAATTT
1 TTTA-TAATTT
* *
41108519 CTAATAA-TT
1 TTTATAATTT
41108528 TTTATAATTT
1 TTTATAATTT
41108538 TTTAT-A-TT
1 TTTATAATTT
41108546 TTTAT-ATTT
1 TTTATAATTT
41108555 TTTATGAA-TT
1 TTTAT-AATTT
* *
41108565 GTAATTAATTT
1 TTTA-TAATTT
* * *
41108576 ATAATCA-TT
1 TTTATAATTT
41108585 TTTATAATTT
1 TTTATAATTT
*
41108595 TTTATATTTT
1 TTTATAATTT
41108605 TTTATA
1 TTTATA
41108611 CTTCTGGAAT
Statistics
Matches: 97, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
8 8 0.08
9 21 0.22
10 53 0.55
11 15 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (10 bp):
TTTATAATTT
Found at i:41109761 original size:16 final size:16
Alignment explanation
Indices: 41109737--41109768 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
41109727 TAACTGTTAT
*
41109737 AAATTACATAATACAA
1 AAATAACATAATACAA
41109753 AAATAACATAATACAA
1 AAATAACATAATACAA
41109769 TATATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.12, G:0.00, T:0.22
Consensus pattern (16 bp):
AAATAACATAATACAA
Found at i:41111235 original size:21 final size:20
Alignment explanation
Indices: 41111209--41111251 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
41111199 AATATTAATA
*
41111209 AATTTAACATTAAAATAAATT
1 AATTTAACAAT-AAATAAATT
*
41111230 AATTTAACAATATATAAATT
1 AATTTAACAATAAATAAATT
41111250 AA
1 AA
41111252 ATAATCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AATTTAACAATAAATAAATT
Found at i:41111275 original size:19 final size:19
Alignment explanation
Indices: 41111251--41111292 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
41111241 ATATAAATTA
41111251 AATAATCTATAAATATATG
1 AATAATCTATAAATATATG
*
41111270 AATAATCTATAAATATATT
1 AATAATCTATAAATATATG
41111289 AATA
1 AATA
41111293 TTAATTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (19 bp):
AATAATCTATAAATATATG
Found at i:41112558 original size:13 final size:13
Alignment explanation
Indices: 41112540--41112605 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 13
41112530 AAATTTTTTT
*
41112540 CTAAATATTATCC
1 CTAAATATTATCA
*
41112553 CTAAATA--A-CC
1 CTAAATATTATCA
*
41112563 CTAAATATTATTA
1 CTAAATATTATCA
*
41112576 CTAAATACT-T--
1 CTAAATATTATCA
41112586 CTAAATATTATCA
1 CTAAATATTATCA
41112599 CTAAATA
1 CTAAATA
41112606 ATTCAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
10 17 0.40
11 2 0.05
12 2 0.05
13 22 0.51
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:41112614 original size:23 final size:23
Alignment explanation
Indices: 41112538--41112614 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
41112528 CTAAATTTTT
*
41112538 TTCTAAATATTATCCCTAAATAA
1 TTCTAAATATTATCACTAAATAA
** * *
41112561 CCCTAAATATTATTACTAAATAC
1 TTCTAAATATTATCACTAAATAA
41112584 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCACTAAATAA
*
41112607 TTCAAAAT
1 TTCTAAAT
41112615 TTAAAAATTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (23 bp):
TTCTAAATATTATCACTAAATAA
Found at i:41117891 original size:23 final size:23
Alignment explanation
Indices: 41117865--41117927 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
41117855 TTAAACTTTT
* *
41117865 CCTAAATATTATCTCTAAATAAC
1 CCTAAATATTATCACTAAAGAAC
*
41117888 CCTAAATATTATCACTAAAGAAT
1 CCTAAATATTATCACTAAAGAAC
*
41117911 TCTAAATATTATCACTA
1 CCTAAATATTATCACTA
41117928 CCATTAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (23 bp):
CCTAAATATTATCACTAAAGAAC
Found at i:41127161 original size:20 final size:20
Alignment explanation
Indices: 41127136--41127191 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
41127126 CCTTAAGTGA
41127136 CAACTAAACATCAATTACAT
1 CAACTAAACATCAATTACAT
* *
41127156 CAACTAAAAATTAATTACAT
1 CAACTAAACATCAATTACAT
41127176 CAACTAAACATCAATT
1 CAACTAAACATCAATT
41127192 TGCAGGTTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (20 bp):
CAACTAAACATCAATTACAT
Found at i:41142005 original size:29 final size:31
Alignment explanation
Indices: 41141959--41142016 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
41141949 ATCATAAATT
*
41141959 CAAAAAAAAAATCAT-AAAATCC-AAAAAGA
1 CAAAAAAAAAAGCATAAAAATCCTAAAAAGA
*
41141988 CAAAAAAAAAAGCTTAAAAATCCTAAAAA
1 CAAAAAAAAAAGCATAAAAATCCTAAAAA
41142017 CTAAAGATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.52
30 7 0.28
31 5 0.20
ACGTcount: A:0.71, C:0.14, G:0.03, T:0.12
Consensus pattern (31 bp):
CAAAAAAAAAAGCATAAAAATCCTAAAAAGA
Found at i:41144023 original size:11 final size:11
Alignment explanation
Indices: 41144007--41144040 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
41143997 TCAATTATTT
41144007 TCTCAATTTCC
1 TCTCAATTTCC
*
41144018 TCTCAATTTGC
1 TCTCAATTTCC
41144029 TCTCAATTTCC
1 TCTCAATTTCC
41144040 T
1 T
41144041 TCCAAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.32, G:0.03, T:0.47
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:41144035 original size:22 final size:22
Alignment explanation
Indices: 41144003--41144056 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
41143993 TCTCTCAATT
41144003 ATTT-TCTCAATTTCC-TCTC-A
1 ATTTCTCTCAATTTCCTTC-CAA
41144023 ATTTGCTCTCAATTTCCTTCCAA
1 ATTT-CTCTCAATTTCCTTCCAA
41144046 ATTTCTCTCAA
1 ATTTCTCTCAA
41144057 ATCCATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.22, C:0.30, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTCTCTCAATTTCCTTCCAA
Found at i:41146374 original size:125 final size:125
Alignment explanation
Indices: 41146152--41146589 Score: 700
Period size: 125 Copynumber: 3.5 Consensus size: 125
41146142 CCAAACATGC
* * *
41146152 TACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCATAAATTCTTCTGATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
*
41146217 TGAAGCGTTTTTTATTCTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACA
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACA
* * *
41146277 TACTGTAGCAAAAGCGCGTCCACGTGGGGGCAATTTCAGAAATTCTTCTAATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
*
41146342 TGAAGCGTTTTTTATACTATTCGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC-
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACA
* *
41146401 TAACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTTAGAAATTCTTCTGATAAAGCATCCTAC
1 T-ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
* *
41146466 TTGAAGCGTTTTTTTATACTATTTTCTCACAAACGTCAACTCGAAATTATTTTTTCAGGACCA
65 TTGAAGCG-TTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGA-CA
** *
41146529 -ACTGTAGCAAAAGCGCGTCCACGTGGATGCCATTTCAGAAATTCTTCTGATAAAGCATCCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCT
41146590 AAACCATAAA
Statistics
Matches: 289, Mismatches: 20, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
124 1 0.00
125 182 0.63
126 105 0.36
127 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (125 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACA
Found at i:41157789 original size:83 final size:84
Alignment explanation
Indices: 41157639--41157803 Score: 296
Period size: 83 Copynumber: 2.0 Consensus size: 84
41157629 TTTATGCTTA
* *
41157639 ATGTGACAATTGCCCACTATAATTTAGGTTAAAGTTCAATTTGCCACTATACTTTATCTTCTTTT
1 ATGTGACAATTGCCCACTATAATTTAGGTTAAAGTTCAATTTACCACTATACTTTATCTTCCTTT
41157704 ATATTTGTCATTATAATAT
66 ATATTTGTCATTATAATAT
*
41157723 ATGTGTCAATTGCCCACTATAATTTAGGTTAAA-TTCAATTTACCACTATACTTTATCTTCCTTT
1 ATGTGACAATTGCCCACTATAATTTAGGTTAAAGTTCAATTTACCACTATACTTTATCTTCCTTT
41157787 ATATTTGTCATTATAAT
66 ATATTTGTCATTATAAT
41157804 TTTGAGTTGA
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
83 46 0.59
84 32 0.41
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.45
Consensus pattern (84 bp):
ATGTGACAATTGCCCACTATAATTTAGGTTAAAGTTCAATTTACCACTATACTTTATCTTCCTTT
ATATTTGTCATTATAATAT
Done.