Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 145 of 213
Found at i:43541648 original size:23 final size:23
Alignment explanation
Indices: 43541618--43541675 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
43541608 TACGAAAAAT
*
43541618 AAATAAAATAAA-AATATATTCA-A
1 AAATAAAATAAATAA-AT-TTAAGA
43541641 AAATAAAA-AAATAAATTTAAGA
1 AAATAAAATAAATAAATTTAAGA
43541663 AAATAAAATAAAT
1 AAATAAAATAAAT
43541676 GGATAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 3 0.10
22 14 0.45
23 14 0.45
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (23 bp):
AAATAAAATAAATAAATTTAAGA
Found at i:43541670 original size:20 final size:19
Alignment explanation
Indices: 43541622--43541675 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
43541612 AAAAATAAAT
*
43541622 AAAATAAAAATATATTCAA
1 AAAATAAAAATAAATTCAA
* *
43541641 AAATAAAAAAATAAATTTAA
1 AAA-ATAAAAATAAATTCAA
43541661 GAAAAT-AAAATAAAT
1 -AAAATAAAAATAAAT
43541676 GGATAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 12 0.41
20 14 0.48
21 3 0.10
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAATAAAAATAAATTCAA
Found at i:43542533 original size:13 final size:13
Alignment explanation
Indices: 43542515--43542557 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
43542505 TAGATTTTTG
43542515 CTAAATATTATCA
1 CTAAATATTATCA
*
43542528 CTAAATA--AT-T
1 CTAAATATTATCA
43542538 CTAAATATTATCA
1 CTAAATATTATCA
43542551 CTAAATA
1 CTAAATA
43542558 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:43542566 original size:23 final size:23
Alignment explanation
Indices: 43542515--43542564 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
43542505 TAGATTTTTG
43542515 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
43542538 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
43542561 -TAAA
1 CTAAA
43542565 ATTTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:43543145 original size:18 final size:19
Alignment explanation
Indices: 43543122--43543170 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
43543112 AATCGTGTCG
43543122 TTCATTTTCAAAAT-ATTA
1 TTCATTTTCAAAATCATTA
*
43543140 TTCATTTAC-AAATCATTA
1 TTCATTTTCAAAATCATTA
*
43543158 TTCAATTTCAAAA
1 TTCATTTTCAAAA
43543171 CCTTTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 4 0.15
18 19 0.73
19 3 0.12
ACGTcount: A:0.41, C:0.14, G:0.00, T:0.45
Consensus pattern (19 bp):
TTCATTTTCAAAATCATTA
Found at i:43550457 original size:18 final size:16
Alignment explanation
Indices: 43550434--43550468 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
43550424 ATTACTACTA
43550434 AAATTTTATGTCAAATTT
1 AAATTTTAT-TC-AATTT
43550452 AAATTTTATTCAATTT
1 AAATTTTATTCAATTT
43550468 A
1 A
43550469 GTCTCTAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 2 0.12
18 9 0.53
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (16 bp):
AAATTTTATTCAATTT
Found at i:43552912 original size:35 final size:36
Alignment explanation
Indices: 43552868--43553002 Score: 148
Period size: 36 Copynumber: 3.8 Consensus size: 36
43552858 AGTTGAACTA
* * * *
43552868 GCTCTTATGAATATC-GGTGTGTTTCGGAGGGATTT
1 GCTCGTATGAACATCTGGTGTGTTTTGGAGGGATTG
* * *
43552903 GTTCGTATGAGCATCTAGTGTGTTTTGGAGGGATTG
1 GCTCGTATGAACATCTGGTGTGTTTTGGAGGGATTG
*
43552939 GCTCGTAT-AAGCATCTGTTGTGTTTTGGAGGGATTG
1 GCTCGTATGAA-CATCTGGTGTGTTTTGGAGGGATTG
** *
43552975 GCTCGGGTGAGCATCTGGTGTGTTTTGG
1 GCTCGTATGAACATCTGGTGTGTTTTGG
43553003 TTGAACTGAC
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
35 12 0.15
36 69 0.84
37 1 0.01
ACGTcount: A:0.15, C:0.11, G:0.36, T:0.39
Consensus pattern (36 bp):
GCTCGTATGAACATCTGGTGTGTTTTGGAGGGATTG
Found at i:43552926 original size:36 final size:35
Alignment explanation
Indices: 43552884--43553002 Score: 157
Period size: 36 Copynumber: 3.3 Consensus size: 35
43552874 ATGAATATCG
* * *
43552884 GTGTGTTTCGGAGGGATTTGTTCGTATGAGCATCT
1 GTGTGTTTTGGAGGGATTGGCTCGTATGAGCATCT
*
43552919 AGTGTGTTTTGGAGGGATTGGCTCGTATAAGCATCT
1 -GTGTGTTTTGGAGGGATTGGCTCGTATGAGCATCT
**
43552955 GTTGTGTTTTGGAGGGATTGGCTCGGGTGAGCATCT
1 G-TGTGTTTTGGAGGGATTGGCTCGTATGAGCATCT
43552991 GGTGTGTTTTGG
1 -GTGTGTTTTGG
43553003 TTGAACTGAC
Statistics
Matches: 74, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.01
36 72 0.97
37 1 0.01
ACGTcount: A:0.13, C:0.10, G:0.38, T:0.39
Consensus pattern (35 bp):
GTGTGTTTTGGAGGGATTGGCTCGTATGAGCATCT
Found at i:43567165 original size:27 final size:27
Alignment explanation
Indices: 43567135--43567332 Score: 170
Period size: 27 Copynumber: 7.3 Consensus size: 27
43567125 TAACTCTATA
* * *
43567135 GGGTAGAATAACTGAAATACCCTCGAT
1 GGGTAAAATTACTGAAATACCCTCAAT
* *
43567162 GGGTAAAATTACCGAAATACCCCCAAT
1 GGGTAAAATTACTGAAATACCCTCAAT
*
43567189 AGGTAAAATTACTGAAATACCC-CTAAT
1 GGGTAAAATTACTGAAATACCCTC-AAT
* * *
43567216 GAGTAAAATTA-TCGAAATACCATCGAT
1 GGGTAAAATTACT-GAAATACCCTCAAT
* * * *
43567243 AGGTAAAATTACTAAAATACCCCCAAA
1 GGGTAAAATTACTGAAATACCCTCAAT
* * *
43567270 GGGTAAAATGACTAAAATACCCTCGAT
1 GGGTAAAATTACTGAAATACCCTCAAT
* *
43567297 GGGTAAAATTA-TAAAAATACCC-CTAT
1 GGGTAAAATTACT-GAAATACCCTCAAT
43567323 AGGGTAAAAT
1 -GGGTAAAAT
43567333 GATTATTATA
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
26 6 0.04
27 132 0.94
28 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTACTGAAATACCCTCAAT
Found at i:43567203 original size:54 final size:53
Alignment explanation
Indices: 43567111--43567332 Score: 205
Period size: 54 Copynumber: 4.1 Consensus size: 53
43567101 CCAAACTAGA
* * * * * * *
43567111 TAAAATAACCGAAATA-ACTCTATAGGGTAGAATAACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATA-GGTAAAATTACTAAAATACCC-CAATGGG
* * * *
43567165 TAAAATTACCGAAATACCCCCAATAGGTAAAATTACTGAAATACCCCTAATGAG
1 TAAAATTACCGAAATACCCTCGATAGGTAAAATTACTAAAATACCCC-AATGGG
* * *
43567219 TAAAATTATCGAAATACCATCGATAGGTAAAATTACTAAAATACCCCCAAAGGG
1 TAAAATTACCGAAATACCCTCGATAGGTAAAATTACTAAAATA-CCCCAATGGG
* ** * *
43567273 TAAAATGACTAAAATACCCTCGATGGGTAAAATTA-TAAAAATACCCCTATAGGG
1 TAAAATTACCGAAATACCCTCGATAGGTAAAATTACT-AAAATACCCCAAT-GGG
43567327 TAAAAT
1 TAAAAT
43567333 GATTATTATA
Statistics
Matches: 140, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
53 7 0.05
54 124 0.89
55 9 0.06
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCTCGATAGGTAAAATTACTAAAATACCCCAATGGG
Found at i:43567248 original size:81 final size:81
Alignment explanation
Indices: 43567148--43567317 Score: 218
Period size: 81 Copynumber: 2.1 Consensus size: 81
43567138 TAGAATAACT
* * * * *
43567148 GAAATACCCTCGATGGGTAAAATTACCGAAATACCCCCAATA-GGTAAAATTACTGAAATACCC-
1 GAAATACCATCGATAGGTAAAATTACCAAAATACCCCCAA-AGGGTAAAATGACTAAAATACCCT
*
43567211 CTAATGAGTAAAATTATC
65 C-AATGAGTAAAATTATA
*
43567229 GAAATACCATCGATAGGTAAAATTACTAAAATACCCCCAAAGGGTAAAATGACTAAAATACCCTC
1 GAAATACCATCGATAGGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACTAAAATACCCTC
* *
43567294 GATGGGTAAAATTATA
66 AATGAGTAAAATTATA
*
43567310 AAAATACC
1 GAAATACC
43567318 CCTATAGGGT
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 1 0.01
81 75 0.97
82 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (81 bp):
GAAATACCATCGATAGGTAAAATTACCAAAATACCCCCAAAGGGTAAAATGACTAAAATACCCTC
AATGAGTAAAATTATA
Found at i:43567343 original size:27 final size:27
Alignment explanation
Indices: 43567244--43567348 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
43567234 ACCATCGATA
* * * *
43567244 GGTAAAATTACTAAAATACCCCCAAAG
1 GGTAAAATGATTAAAATACCCCTATAG
* *
43567271 GGTAAAATGACTAAAATACCCTCGAT-G
1 GGTAAAATGATTAAAATACCC-CTATAG
* *
43567298 GGTAAAATTATAAAAATACCCCTATAG
1 GGTAAAATGATTAAAATACCCCTATAG
**
43567325 GGTAAAATGATTATTATACCCCTA
1 GGTAAAATGATTAAAATACCCCTA
43567349 AGAGATTAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.05
27 60 0.92
28 2 0.03
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (27 bp):
GGTAAAATGATTAAAATACCCCTATAG
Found at i:43568717 original size:30 final size:32
Alignment explanation
Indices: 43568681--43568746 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
43568671 GGTTGAACAT
43568681 TTTCTTTAC-TT-TTCATATTTTTAGATTAGG
1 TTTCTTTACTTTCTTCATATTTTTAGATTAGG
* *
43568711 TTTCTTTTCTTTTCTTCTTATTTTTAGATTAGG
1 TTTCTTTAC-TTTCTTCATATTTTTAGATTAGG
43568744 TTT
1 TTT
43568747 TCCCTTTCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 8 0.26
32 2 0.06
33 21 0.68
ACGTcount: A:0.15, C:0.11, G:0.09, T:0.65
Consensus pattern (32 bp):
TTTCTTTACTTTCTTCATATTTTTAGATTAGG
Found at i:43571539 original size:37 final size:37
Alignment explanation
Indices: 43571461--43571551 Score: 103
Period size: 37 Copynumber: 2.5 Consensus size: 37
43571451 GTGTCGAGGT
** *
43571461 GTGTTATCGGTTGGATTAGCTCTCAGGAGTGTTTGGT
1 GTGTTATCGGTTGGATTAGCTCTCAGGAGCATTTGGC
* * * *
43571498 GTGTTATTGGTTGGATTAGCTCTTATGAGCATTTTGC
1 GTGTTATCGGTTGGATTAGCTCTCAGGAGCATTTGGC
*
43571535 GTGTT-TCGATTGGATTA
1 GTGTTATCGGTTGGATTA
43571552 CTTATGTACT
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
36 10 0.22
37 35 0.78
ACGTcount: A:0.15, C:0.10, G:0.31, T:0.44
Consensus pattern (37 bp):
GTGTTATCGGTTGGATTAGCTCTCAGGAGCATTTGGC
Found at i:43572371 original size:21 final size:21
Alignment explanation
Indices: 43572347--43572386 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
43572337 ATTTAGCATG
*
43572347 TTTTGAGA-AGGTTTAATGGCA
1 TTTTGA-ATAGGTCTAATGGCA
43572368 TTTTGAATAGGTCTAATGG
1 TTTTGAATAGGTCTAATGG
43572387 TTGGTAGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.28, C:0.05, G:0.28, T:0.40
Consensus pattern (21 bp):
TTTTGAATAGGTCTAATGGCA
Found at i:43574061 original size:113 final size:111
Alignment explanation
Indices: 43573860--43574143 Score: 293
Period size: 113 Copynumber: 2.5 Consensus size: 111
43573850 TCATTGGACC
* *
43573860 GAAACTAGGCAGAGAGTTTACTAAGTTTTCTGTTGGAATGGAATATGTTTTTGTTGGAGCAAACT
1 GAAACTAGGCAGAGAGTTTACTAAGTTTTCTGTTGGAATGGAATATGTTTCTATTGGAGCAAACT
*
43573925 TAGTTTGCTAGTTTTCCATTGGAGCATAGCCTGTTCCTATTGGAGT
66 TAGTTTGCTAGTTATCCATTGGAGCATAGCCTGTTCCTATTGGAGT
* * * * * *
43573971 GAAACTAGGTAGAGAGTTTGCTAAGTTTTTTTTTTTGGAATGGGATCTGTTTCTATTGGAGCGAA
1 GAAACTAGGCAGAGAGTTTACTAAG--TTTTCTGTTGGAATGGAATATGTTTCTATTGGAGC-AA
* ** ** *** * *
43574036 A-TTAGTTTTCTAGTTATCTGTTGGAGCGGAATTTGTTTCTTTTGGAGT
63 ACTTAGTTTGCTAGTTATCCATTGGAGCATAGCCTGTTCCTATTGGAGT
* * * * * *
43574084 GAAACTAGGCAGAAAAG-TTACTAAGTTTTCTATTGGAATGAAATCTATTTCTAGTGGAGC
1 GAAACTAGGCAG-AGAGTTTACTAAGTTTTCTGTTGGAATGGAATATGTTTCTATTGGAGC
43574144 GAACCTAGGC
Statistics
Matches: 141, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
111 52 0.37
113 83 0.59
114 6 0.04
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (111 bp):
GAAACTAGGCAGAGAGTTTACTAAGTTTTCTGTTGGAATGGAATATGTTTCTATTGGAGCAAACT
TAGTTTGCTAGTTATCCATTGGAGCATAGCCTGTTCCTATTGGAGT
Found at i:43574244 original size:5 final size:5
Alignment explanation
Indices: 43574236--43574269 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
43574226 GGCAATTCAA
43574236 TTTAT TTTAT TTTATT TATTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTA-T T-TTAT TTTAT TTTAT TT
43574270 ACTTTGGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 20 0.74
6 4 0.15
7 3 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:43574259 original size:17 final size:17
Alignment explanation
Indices: 43574237--43574270 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
43574227 GCAATTCAAT
43574237 TTATTTTATTTTATTTA
1 TTATTTTATTTTATTTA
43574254 TTATTTTATTTTATTTA
1 TTATTTTATTTTATTTA
43574271 CTTTGGGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TTATTTTATTTTATTTA
Found at i:43574358 original size:21 final size:21
Alignment explanation
Indices: 43574332--43574377 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
43574322 AGAATGGAGG
*
43574332 CCACTTTGGGTATCATGATAT
1 CCACTTTGGGTATCACGATAT
43574353 CCACTTTGGGTATCACGATAT
1 CCACTTTGGGTATCACGATAT
43574374 CCAC
1 CCAC
43574378 CTGCCAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (21 bp):
CCACTTTGGGTATCACGATAT
Found at i:43578596 original size:6 final size:6
Alignment explanation
Indices: 43578585--43578638 Score: 72
Period size: 6 Copynumber: 8.5 Consensus size: 6
43578575 ATTCCTCAAG
*
43578585 TCATTT TCATTTT TCATTTT TCAATTT TCATTT TCATTT TCATTT TCAATT
1 TCATTT TCA-TTT TCA-TTT TC-ATTT TCATTT TCATTT TCATTT TCATTT
43578636 TCA
1 TCA
43578639 ATTTGGAGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
6 27 0.60
7 17 0.38
8 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (6 bp):
TCATTT
Found at i:43578611 original size:8 final size:7
Alignment explanation
Indices: 43578588--43578630 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
43578578 CCTCAAGTCA
43578588 TTTTCAT
1 TTTTCAT
43578595 TTTTCAT
1 TTTTCAT
*
43578602 TTTTCAA
1 TTTTCAT
43578609 TTTTCA-
1 TTTTCAT
43578615 TTTTCA-
1 TTTTCAT
43578621 TTTTCAT
1 TTTTCAT
43578628 TTT
1 TTT
43578631 CAATTTCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
6 12 0.35
7 22 0.65
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTTCAT
Found at i:43578699 original size:51 final size:50
Alignment explanation
Indices: 43578622--43578747 Score: 130
Period size: 51 Copynumber: 2.5 Consensus size: 50
43578612 TCATTTTCAT
* * * *
43578622 TTTCATTT-T-CAATTTCAATTTGGAGAAAACCACATTCATTTCCAAATG
1 TTTCATTTCTCCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAATG
** *
43578670 ATTTCATTTCTCCATTTTCATTTTAGAGAAAACCTTAATCATTTTCAAATG
1 -TTTCATTTCTCCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAATG
43578721 TTTCCTATTTCTCCATTTCATCATTTT
1 TTT-C-ATTTCTCCATTT--TCATTTT
43578748 TGTTCATTTG
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
49 8 0.12
50 4 0.06
51 33 0.52
52 12 0.19
54 7 0.11
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.46
Consensus pattern (50 bp):
TTTCATTTCTCCATTTTCATTTTAGAGAAAACCACAATCATTTCCAAATG
Found at i:43580351 original size:9 final size:9
Alignment explanation
Indices: 43580337--43580393 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
43580327 TTTTTAAAGT
43580337 AAAAAAATG
1 AAAAAAATG
43580346 AAAAAAATAG
1 AAAAAAAT-G
*
43580356 AAAAAAAGG
1 AAAAAAATG
* *
43580365 AAAAATAGG
1 AAAAAAATG
*
43580374 AAAAAAAAG
1 AAAAAAATG
*
43580383 -AATAAATG
1 AAAAAAATG
43580391 AAA
1 AAA
43580394 GCACTTATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 6 0.15
9 26 0.65
10 8 0.20
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (9 bp):
AAAAAAATG
Found at i:43580368 original size:17 final size:17
Alignment explanation
Indices: 43580348--43580393 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
43580338 AAAAAATGAA
*
43580348 AAAAATAGAAAAAAAGG
1 AAAAATAGAAAAAAAAG
43580365 AAAAATAGGAAAAAAAAG
1 AAAAATA-GAAAAAAAAG
43580383 AATAAAT-GAAA
1 AA-AAATAGAAA
43580394 GCACTTATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 11 0.42
18 11 0.42
19 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (17 bp):
AAAAATAGAAAAAAAAG
Found at i:43583900 original size:18 final size:18
Alignment explanation
Indices: 43583877--43583917 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
43583867 ATCTTCACGC
43583877 TCTCTATTCT-TGCTACTT
1 TCTCTA-TCTATGCTACTT
*
43583895 TCTCTATCTATGCTTCTT
1 TCTCTATCTATGCTACTT
43583913 TCTCT
1 TCTCT
43583918 TCCATTCCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.10, C:0.29, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTCTATCTATGCTACTT
Found at i:43589024 original size:14 final size:15
Alignment explanation
Indices: 43588996--43589031 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
43588986 TAAATCTATA
43588996 ATAATATATAATATT
1 ATAATATATAATATT
43589011 ATAATATA-AATATT
1 ATAATATATAATATT
*
43589025 AAAATAT
1 ATAATAT
43589032 GTAAAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATATATAATATT
Found at i:43592899 original size:16 final size:16
Alignment explanation
Indices: 43592878--43592945 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
43592868 TTTGGTTCGC
*
43592878 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
43592894 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
*
43592910 TGTATTGGATTAGAGG
1 TGTATTGGAATAGAGG
43592926 TGTATTGGAATAGAGG
1 TGTATTGGAATAGAGG
43592942 TGTA
1 TGTA
43592946 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGAATAGAGG
Found at i:43592914 original size:32 final size:32
Alignment explanation
Indices: 43592878--43592945 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
43592868 TTTGGTTCGC
43592878 TGTATTGGATTAGAGGTGTATTGGAATAGAGG
1 TGTATTGGATTAGAGGTGTATTGGAATAGAGG
43592910 TGTATTGGATTAGAGGTGTATTGGAATAGAGG
1 TGTATTGGATTAGAGGTGTATTGGAATAGAGG
43592942 TGTA
1 TGTA
43592946 ATAGCAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGAATAGAGG
Found at i:43592985 original size:45 final size:41
Alignment explanation
Indices: 43592926--43593035 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
43592916 GGATTAGAGG
*
43592926 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
43592968 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
43593011 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
43593036 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:43593208 original size:14 final size:15
Alignment explanation
Indices: 43593169--43593210 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
43593159 TTTTAACATA
*
43593169 ATTATTATTAAATAT
1 ATTATAATTAAATAT
43593184 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
43593198 A-TATAATTTAATA
1 ATTATAATTAAATA
43593211 AAATTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:43593518 original size:24 final size:27
Alignment explanation
Indices: 43593467--43593519 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
43593457 TATATGTAAT
*
43593467 ATTATTAAAATAATATTTTTTATTTTA
1 ATTATTAAAATAATATTTTTTATATTA
*
43593494 ATTATTTAAA-AATA-TTTTTA-ATTA
1 ATTATTAAAATAATATTTTTTATATTA
43593518 AT
1 AT
43593520 GCAGTGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
25 6 0.25
26 4 0.17
27 9 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
ATTATTAAAATAATATTTTTTATATTA
Found at i:43598695 original size:19 final size:20
Alignment explanation
Indices: 43598653--43598695 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
43598643 CCCAAAAATG
*
43598653 TTTTTTCAAAAACTGAACAC
1 TTTTTTCAAAAACTGAACAA
43598673 TTTTTT-AAGAAACTGAA-AA
1 TTTTTTCAA-AAACTGAACAA
43598692 TTTT
1 TTTT
43598696 AACTTCTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (20 bp):
TTTTTTCAAAAACTGAACAA
Found at i:43608301 original size:22 final size:21
Alignment explanation
Indices: 43608273--43608314 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
43608263 GATCAACATA
*
43608273 AATATAATCACATACATATCAG
1 AATATAAGCACAT-CATATCAG
*
43608295 AATATAAGCTCATCATATCA
1 AATATAAGCACATCATATCA
43608315 ATCATCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.48, C:0.19, G:0.05, T:0.29
Consensus pattern (21 bp):
AATATAAGCACATCATATCAG
Found at i:43610204 original size:28 final size:28
Alignment explanation
Indices: 43610163--43610226 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
43610153 TGAACCTTGG
*
43610163 ACCACTAGGGTAGCTAAAGAATTAATAA
1 ACCACTAGGATAGCTAAAGAATTAATAA
* *
43610191 ACCACTAGGATAGCTAGAGAGTTAATAA
1 ACCACTAGGATAGCTAAAGAATTAATAA
43610219 ACCACTAG
1 ACCACTAG
43610227 ACTATTCCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (28 bp):
ACCACTAGGATAGCTAAAGAATTAATAA
Found at i:43612533 original size:16 final size:16
Alignment explanation
Indices: 43612512--43612547 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
43612502 ACCCGTTTTT
43612512 TAGTGGTGTCGAAAAA
1 TAGTGGTGTCGAAAAA
* *
43612528 TAGTGGTGTTGAAAAG
1 TAGTGGTGTCGAAAAA
43612544 TAGT
1 TAGT
43612548 AGTTTCGGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.31
Consensus pattern (16 bp):
TAGTGGTGTCGAAAAA
Found at i:43617530 original size:47 final size:46
Alignment explanation
Indices: 43617430--43617533 Score: 111
Period size: 47 Copynumber: 2.2 Consensus size: 46
43617420 GAAAAGATTG
** *
43617430 AGAAAGAAAAGGGATGGGATTTTAGGGTTTCAAGCAAAGAAAGTCT
1 AGAAAGAAAAGGGAAAGGATTTTAGGGTTTCAAGCAAAGAAAATCT
* * * *
43617476 GGAAAAGAAAAGGGAAATGATTTTGGGGTTTTAAGCAAA-AAAATACTT
1 AG-AAAGAAAAGGGAAAGGATTTTAGGGTTTCAAGCAAAGAAAAT-C-T
43617524 AGAAAGAAAA
1 AGAAAGAAAA
43617534 TAATTCGTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
46 5 0.11
47 40 0.85
48 2 0.04
ACGTcount: A:0.47, C:0.05, G:0.27, T:0.21
Consensus pattern (46 bp):
AGAAAGAAAAGGGAAAGGATTTTAGGGTTTCAAGCAAAGAAAATCT
Found at i:43617669 original size:40 final size:40
Alignment explanation
Indices: 43617600--43617691 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
43617590 GTAAAAAACA
* *
43617600 TTTTACGGCTTTTTTAACACAAACACCACTATTGCTTACC
1 TTTTGCGGCATTTTTAACACAAACACCACTATTGCTTACC
* * *
43617640 TTTTGCGGCATTTTTACCACAAACGCCACTATTTCTTACC
1 TTTTGCGGCATTTTTAACACAAACACCACTATTGCTTACC
*
43617680 TTTTGCTGCATT
1 TTTTGCGGCATT
43617692 GCGGCATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.40
Consensus pattern (40 bp):
TTTTGCGGCATTTTTAACACAAACACCACTATTGCTTACC
Found at i:43618892 original size:409 final size:403
Alignment explanation
Indices: 43618093--43618902 Score: 1286
Period size: 406 Copynumber: 2.0 Consensus size: 403
43618083 TTCTAAGTGG
*
43618093 ATTTTCAAATAGAAAATGAAAGCATGGAACAATTGACAAGTACAAGGCCAGATTGGTTATAAAAG
1 ATTTTCAAACAGAAAATGAAAGCATGGAACAATTGACAAGTACAAGGCCAGATTGGTTATAAAAG
* * * * *
43618158 GTTATAGAGAAAAGGAAGGTTTTGACTATTTTGATATTTGTTCTCTATTATCCAGGATAACTTCG
66 GTTATAGACAAAAGGAAGGTCTTGACTATTTTGACACTTGTTCTCTAGTATCCAGGATAACTTCG
* *
43618223 ATAAGGATGATACTTGCGATTGACGCCTTGTGGAATTTAGAATTACAGCAAATGGATGTTAAAAT
131 ATAAGGATGATACTTGCGATTGACGCCTTGTGAAATTTAGAATTACAGCAAATGGACGTTAAAAT
43618288 AGCTTTCCTAAATAGAGATCTTGATAAAGAAATTTACATGGAACAACATGAGGGTAATATAGTTC
196 AGCTTTCCTAAATAGAGA-CTTGATAAAGAAATTTACATGGAACAACATGAGGGTAATATAGTTC
* *
43618353 CAGGACAAGGAAAGTTTGTAAATTGGTAAAGTCTTTGTATGGACTTAAGCAAGCACCAAAGCAAT
260 CAAGACAAGGAAAGTTTGTAAATTGGTAAAGTCTTTGTATGGACTTAAGCAAGCACCAAAGCAAC
43618418 GTATGAAAAATTTGATAATGCCATGATGATAAATGACTTTAAGATTAATGAGTATGACAAATGTG
325 GTATGAAAAATTTGATAATGCCATGATGATAAATGACTTTAAGATTAATGAGTATGACAAATGTG
43618483 TACATGTCAAATGA
390 TACATGTCAAATGA
*
43618497 ATTTTCAAACAGAAAATGAAAGCAAATGGAACAATTGACAAGTACAAGGCCAGGTTGGTTATAAA
1 ATTTTCAAACAGAAAATGAAAGC--ATGGAACAATTGACAAGTACAAGGCCAGATTGGTTATAAA
43618562 AGGTTATAGACAAAAGGAAGGTCTTGACTATTTTGACACTTGTTCTCTAGTATCCAGGATAACTT
64 AGGTTATAGACAAAAGGAAGGTCTTGACTATTTTGACACTTGTTCTCTAGTATCCAGGATAACTT
* * *
43618627 CGATAAGGATGATACTTGTGATTGTCGCCTT-TCGAAAATTTAGAAGTT-CATCAAATGGACGTT
129 CGATAAGGATGATACTTGCGATTGACGCCTTGT-G-AAATTTAGAA-TTACAGCAAATGGACGTT
* * * *
43618690 AAAATAGCTTTCCTAAAT-GAAGA-TTGATGAAGAAATTTATATGGAACAACTTGAGGGTAATGT
191 AAAATAGCTTTCCTAAATAG-AGACTTGATAAAGAAATTTACATGGAACAACATGAGGGTAATAT
*
43618753 AGTTCCAAGACAAGAAATGAAAGTTTGTAAATTGGTAAAGTCTTTGTATGGACTTAAGCAAGTAC
255 AGTTCCAAGACAAG----GAAAGTTTGTAAATTGGTAAAGTCTTTGTATGGACTTAAGCAAGCAC
*** *
43618818 CAAAGCAACGTATGAAAAATTTGATAATTTTATGATGATAAATGACTTTAAGATTAATGAGTGTG
316 CAAAGCAACGTATGAAAAATTTGATAATGCCATGATGATAAATGACTTTAAGATTAATGAGTATG
43618883 ACAAATGTGTACATGTCAAA
381 ACAAATGTGTACATGTCAAA
43618903 ACTAGTGAAG
Statistics
Matches: 373, Mismatches: 23, Indels: 15
0.91 0.06 0.04
Matches are distributed among these distances:
404 22 0.06
405 50 0.13
406 130 0.35
407 43 0.12
408 2 0.01
409 126 0.34
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (403 bp):
ATTTTCAAACAGAAAATGAAAGCATGGAACAATTGACAAGTACAAGGCCAGATTGGTTATAAAAG
GTTATAGACAAAAGGAAGGTCTTGACTATTTTGACACTTGTTCTCTAGTATCCAGGATAACTTCG
ATAAGGATGATACTTGCGATTGACGCCTTGTGAAATTTAGAATTACAGCAAATGGACGTTAAAAT
AGCTTTCCTAAATAGAGACTTGATAAAGAAATTTACATGGAACAACATGAGGGTAATATAGTTCC
AAGACAAGGAAAGTTTGTAAATTGGTAAAGTCTTTGTATGGACTTAAGCAAGCACCAAAGCAACG
TATGAAAAATTTGATAATGCCATGATGATAAATGACTTTAAGATTAATGAGTATGACAAATGTGT
ACATGTCAAATGA
Found at i:43637685 original size:18 final size:18
Alignment explanation
Indices: 43637658--43637701 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
43637648 TTTTTTAATG
* *
43637658 TTTATCATTATACCATTA
1 TTTATTATTATAACATTA
*
43637676 TTTATTATTATAATATTA
1 TTTATTATTATAACATTA
43637694 TTTATTAT
1 TTTATTAT
43637702 CATGGTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTATTATTATAACATTA
Found at i:43637766 original size:23 final size:23
Alignment explanation
Indices: 43637740--43637807 Score: 84
Period size: 23 Copynumber: 2.9 Consensus size: 23
43637730 ATACACGCAT
43637740 TGTTTTTATATAATATATATACA
1 TGTTTTTATATAATATATATACA
**
43637763 TGTTTTTATATAATATACT-CGCA
1 TGTTTTTATATAATATA-TATACA
*
43637786 TGGTTTTTTTATAATATATATA
1 T-GTTTTTATATAATATATATA
43637808 TATGCATCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
23 21 0.57
24 16 0.43
ACGTcount: A:0.34, C:0.06, G:0.07, T:0.53
Consensus pattern (23 bp):
TGTTTTTATATAATATATATACA
Found at i:43639783 original size:19 final size:18
Alignment explanation
Indices: 43639759--43639804 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
43639749 ACGCCTATTT
*
43639759 TTTGCATTCATTTCATGCA
1 TTTGCATTCATTACAT-CA
43639778 TTTGCATTTCATTACATCA
1 TTTGCA-TTCATTACATCA
*
43639797 TATGCATT
1 TTTGCATT
43639805 AGACACCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 2 0.08
19 13 0.54
20 9 0.38
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.48
Consensus pattern (18 bp):
TTTGCATTCATTACATCA
Found at i:43642711 original size:17 final size:16
Alignment explanation
Indices: 43642676--43642732 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 16
43642666 TTGAGTCGTA
*
43642676 AAAAAAATGATGAAATG
1 AAAAAAATGA-AAAATG
43642693 AAAAAAATGAAAAAGTG
1 AAAAAAATGAAAAA-TG
*
43642710 AATGAAAAATAAAAAATGG
1 AA--AAAAATGAAAAAT-G
43642729 AAAA
1 AAAA
43642733 GTAAAATGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
16 3 0.09
17 16 0.47
18 1 0.03
19 14 0.41
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (16 bp):
AAAAAAATGAAAAATG
Found at i:43644122 original size:44 final size:44
Alignment explanation
Indices: 43643981--43644484 Score: 428
Period size: 44 Copynumber: 11.4 Consensus size: 44
43643971 GTTGAAAAGC
*
43643981 AGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGAT
*** * *** *
43644025 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAGAGAT
***
43644070 AATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
43644114 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATC-GAAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGAT
* * * * * *** * *
43644158 AGTAGATCTTATCTTCCTATACTGGTGGTGAAGTAAAT-TGAAGAT
1 AGCAGATCTTGTCTTCATGTA-TTGACATGAAGTAGATCAG-AGAT
*** * * *
43644203 AATGGATCTTGCCTTCATGTATTGACATGAAGTTGATTAGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
** *
43644247 AGTGGATCTTGTCTTCATGTATTGACATGAAGTATATCAGAGAT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
* * * * * *
43644291 AGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAA
1 AGCAGATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGAT
* * *
43644336 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-GAAGAA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAG-AGAT
* *
43644380 AACAGATCTTGTTTTCATGTATT-AGCATGAAGTAGATC-GAGGAT
1 AGCAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCAGA-GAT
* * * * * *
43644424 AAC-GAATCTTATCTTCCTGTACTGGCAGTGAAGTAGATCAAAGAT
1 AGCAG-ATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGAT
43644469 AGCAGATCTTGTCTTC
1 AGCAGATCTTGTCTTC
43644485 CCATATTGGT
Statistics
Matches: 368, Mismatches: 77, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
43 3 0.01
44 235 0.64
45 128 0.35
46 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGAGAT
Found at i:43644224 original size:133 final size:133
Alignment explanation
Indices: 43643981--43644484 Score: 633
Period size: 133 Copynumber: 3.8 Consensus size: 133
43643971 GTTGAAAAGC
* * *
43643981 AGCAAATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATA
**
43644046 CTGGTGGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
66 CTGGCAGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
43644111 GAT
131 GAT
*
43644114 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGTAGATCTTATCTTCCTATA
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATA
** * ** * * *
43644179 CTGGTGGTGAAGTAAATTGAAGATAATGGATCTTGCCTTCATGTATTGACATGAAGTTGATTAGA
66 CTGGCAGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
43644244 GAT
131 GAT
** * * *
43644247 AGTGGATCTTGTCTTCATGTATTGACATGAAGTATATC-AGAGATAGCAGATCTTGTCTTCCTGT
1 AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGA-AGATAGCAGATCTTATCTTCCTAT
* * *
43644311 ACTGGCAGCGAAGTAGATCAAAGA-AA-GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
65 ACTGGCAGTGAAGTAGATCAAAGATAATG--GATCTTGTCTTCATGTATTGACATGAAGTAGATC
*
43644374 -GAAGAA
128 AG-AGAT
* * * * *
43644380 AACAGATCTTGTTTTCATGTATT-AGCATGAAGTAGATCGAGGATAAC-GAATCTTATCTTCCTG
1 AGCAGATCTTGTCTTCATGTATTGA-CATGAAGTAGATCGAAGATAGCAG-ATCTTATCTTCCTA
***
43644443 TACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTC
64 TACTGGCAGTGAAGTAGATCAAAGATAATGGATCTTGTCTTC
43644485 CCATATTGGT
Statistics
Matches: 323, Mismatches: 39, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
131 1 0.00
132 6 0.02
133 314 0.97
134 2 0.01
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (133 bp):
AGCAGATCTTGTCTTCATGTATTGACATGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATA
CTGGCAGTGAAGTAGATCAAAGATAATGGATCTTGTCTTCATGTATTGACATGAAGTAGATCAGA
GAT
Found at i:43644523 original size:89 final size:90
Alignment explanation
Indices: 43643986--43644526 Score: 406
Period size: 89 Copynumber: 6.1 Consensus size: 90
43643976 AAAGCAGCAA
* * * *** *
43643986 ATCTTGTCTTCATGTATTGACA-TGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGG
1 ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
*** * *
43644050 TGGTGAAGTAGATCAAAGATA-ATGG
66 ACATGAAGTAGATCGAAGATACA-AG
* * *
43644075 ATCTTGTCTTCATGTATTGACA-TGAAGTAGATCAGAGATAGCAGATCTTGTCTTCATGTATT-G
1 ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
**
43644138 ACATGAAGTAGATCGAAGATAGTAG
66 ACATGAAGTAGATCGAAGATACAAG
* * * ** * ** *** *
43644163 ATCTTATCTTCCTATACTGGTGGTGAAGTAAATTGAAGATAATGGATCTTGCCTTCATGTATT-G
1 ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
* * ***
43644227 ACATGAAGTTGAT-TAGAGATAGTGG
66 ACATGAAGTAGATCGA-AGATACAAG
* * * * * *
43644252 ATCTTGTCTTCATGTATTGACA-TGAAGTATATCAGAGATAGCAGATCTTGTCTTCCTGTACTGG
1 ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
43644316 -CAGCGAAGTAGATCAAAGAAAGC-AG
66 ACA-TGAAGTAGATCGAAGATA-CAAG
* * * * * *
43644341 ATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCGAAGAAAACAGATCTTGTTTTCATGTATTAG
1 ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
* *
43644405 -CATGAAGTAGATCGAGGATA-ACG
66 ACATGAAGTAGATCGAAGATACAAG
* * ***
43644428 AATCTTATCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATATTG
1 -ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTG
****
43644493 GTGGCGAAGTAGATCGAAGATACAAG
65 GACATGAAGTAGATCGAAGATACAAG
43644519 -TCTTATCT
1 ATCTTATCT
43644527 CCCTGAAGTA
Statistics
Matches: 355, Mismatches: 84, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
87 1 0.00
88 99 0.28
89 236 0.66
90 17 0.05
91 2 0.01
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (90 bp):
ATCTTATCTTCATGTATTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGG
ACATGAAGTAGATCGAAGATACAAG
Found at i:43644539 original size:133 final size:133
Alignment explanation
Indices: 43644296--43644539 Score: 321
Period size: 133 Copynumber: 1.8 Consensus size: 133
43644286 GAGATAGCAG
* **
43644296 ATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGG
1 ATCTTATCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGG
* * * * * *
43644361 CGTGAAGTAGATCGAAGAAAACAGATCTTGTTTTCATGTATTAGCATGAAGTAGATCGAGGATAA
66 CGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGAAGTAGCATGAAGTAGATCGAGGATAA
43644426 CGA
131 CGA
* * *
43644429 ATCTTATCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATATTGG
1 ATCTTATCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGG
* * *
43644494 TGGCGAAGTAGATCGAAG-ATACA-AGTCTTATCTCCCTGAAGTAGCA
66 -CGCGAAGTAGATCGAAGAAAACAGA-TCTTATCTCCATGAAGTAGCA
43644540 GTAGAGCAGA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
132 1 0.01
133 78 0.83
134 15 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (133 bp):
ATCTTATCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGG
CGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGAAGTAGCATGAAGTAGATCGAGGATAA
CGA
Found at i:43644570 original size:133 final size:133
Alignment explanation
Indices: 43644302--43644570 Score: 287
Period size: 133 Copynumber: 2.0 Consensus size: 133
43644292 GCAGATCTTG
** *
43644302 TCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGGCGCGAA
* * * * * * * * *
43644367 GTAGATCGAAGAAAACAGATCTTGTTTTCATGTATTAGCATGAAGTAGATCGAGGATAACGAATC
66 GTAGATCGAAGAAAACAGATCTTATCTCCATGAAGTAGCATGAAGCAGATCAAAGATAACCAATC
*
43644432 TTA
131 CTA
* * * *
43644435 TCTTCCTGTACTGGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGA
1 TCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGG-CGCGA
* *
43644500 AGTAGATCGAAG-ATACA-AGTCTTATCTCCCTGAAGTAGCA-GTAGAGCAGA-CAAA-AGTAAC
65 AGTAGATCGAAGAAAACAGA-TCTTATCTCCATGAAGTAGCATG-A-AGCAGATCAAAGA-TAAC
43644560 CAATCCTA
126 CAATCCTA
43644568 TCT
1 TCT
43644571 CCTTGAAGTT
Statistics
Matches: 112, Mismatches: 19, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
132 3 0.03
133 89 0.79
134 20 0.18
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (133 bp):
TCTTCCTGTACTGGCAGCGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCACATATTGGCGCGAA
GTAGATCGAAGAAAACAGATCTTATCTCCATGAAGTAGCATGAAGCAGATCAAAGATAACCAATC
CTA
Found at i:43646097 original size:23 final size:23
Alignment explanation
Indices: 43646071--43646160 Score: 92
Period size: 23 Copynumber: 3.8 Consensus size: 23
43646061 ATACACGCAT
43646071 TGTTTTTATATAATATATATGCA
1 TGTTTTTATATAATATATATGCA
*
43646094 TGTTTTTATATAATATACT-CGCA
1 TGTTTTTATATAATATA-TATGCA
*
43646117 TGGTTTTTTTATAATATATATATGCA
1 T-GTTTTTATAT-A-ATATATATGCA
* * *
43646143 TCTTTTTATGTAGTATAT
1 TGTTTTTATATAATATAT
43646161 GTATACCTGT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
23 26 0.47
24 11 0.20
25 9 0.16
26 9 0.16
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (23 bp):
TGTTTTTATATAATATATATGCA
Found at i:43655329 original size:33 final size:33
Alignment explanation
Indices: 43655287--43655368 Score: 148
Period size: 33 Copynumber: 2.5 Consensus size: 33
43655277 CTCTCATTAC
43655287 ATAGCCATCAGGGTGTTCAAACATGTACACAAG
1 ATAGCCATCAGGGTGTTCAAACATGTACACAAG
43655320 ATAGCCATCAGGGTGTTCAAACATGTACACAAG
1 ATAGCCATCAGGGTGTTCAAACATGTACACAAG
43655353 ATAGCCAT-AGAGGTGT
1 ATAGCCATCAG-GGTGT
43655369 CCATACAGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
32 2 0.04
33 46 0.96
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (33 bp):
ATAGCCATCAGGGTGTTCAAACATGTACACAAG
Found at i:43657455 original size:21 final size:21
Alignment explanation
Indices: 43657426--43657465 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43657416 ATAAGTTAGG
43657426 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
43657447 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
43657466 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:43657725 original size:7 final size:7
Alignment explanation
Indices: 43657709--43657738 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
43657699 GAGGTGACAC
43657709 AAAAAT-
1 AAAAATA
43657715 AAAAATA
1 AAAAATA
43657722 AAAAATA
1 AAAAATA
43657729 AAAAATA
1 AAAAATA
43657736 AAA
1 AAA
43657739 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAATA
Found at i:43657774 original size:24 final size:24
Alignment explanation
Indices: 43657710--43657787 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
43657700 AGGTGACACA
* * *
43657710 AAAATAAAAATAAAAAATAAAAAAT
1 AAAAT-AAAATAAATATTAAATAAT
43657735 AAAATAAAATAAATATTAAATAAT
1 AAAATAAAATAAATATTAAATAAT
* * * *
43657759 AAAATGAAGTATATATAAAATAAGT
1 AAAATAAAATAAATATTAAATAA-T
43657784 AAAA
1 AAAA
43657788 AGAGAACCAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 35 0.78
25 10 0.22
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (24 bp):
AAAATAAAATAAATATTAAATAAT
Found at i:43659416 original size:50 final size:50
Alignment explanation
Indices: 43659361--43659820 Score: 289
Period size: 50 Copynumber: 9.2 Consensus size: 50
43659351 CGCTGCTGTA
* * *
43659361 GCTTTAATATTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCATTATG
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
* * * * * * * ** * *
43659411 GCTTTAATCTGTTCAACTGCACCT-CCTGGGAGGTAAGATTTGCTGTTGTA
1 GCTTTAATCTTTTTAACCGCA-ATGTCAGGGAGGCAAGATTCACCGTTGTG
*
43659461 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCGAGATTCACCGTTGTG
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
* ** * ** * * * * * * * *
43659511 GCTTTAATCTGTTCCACTGCACCGCCTA-GGAGGTAGGATTCGCTGCTATA
1 GCTTTAATCTTTTTAACCGCAATGTC-AGGGAGGCAAGATTCACCGTTGTG
43659561 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
* * ** * ** *** * * * * *
43659611 CCTTTAATCTGTTCCACTGCACCGTTTTGGAGGTAAGATTCGCTGCTGTA
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
*
43659661 GCTTTAATCTTTTTAACCACAATGTCAGGG-GAGCAAGATTCACCGTTGTG
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAG-GCAAGATTCACCGTTGTG
* ** * * * * * * *
43659711 GCTTTAATCTGTTCCACTGC-ATCGCCAGGGAAGTAACACTCACCGCTGTG
1 GCTTTAATCTTTTTAACCGCAAT-GTCAGGGAGGCAAGATTCACCGTTGTG
* * * * * * * *
43659761 GCTTTAGTCTTTTTAACTGAAATGTCGGGGAAGCAAGATACGCCGTCGTG
1 GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
43659811 GCTTTAATCT
1 GCTTTAATCT
43659821 GCTCCATTAC
Statistics
Matches: 290, Mismatches: 112, Indels: 16
0.69 0.27 0.04
Matches are distributed among these distances:
49 5 0.02
50 281 0.97
51 4 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (50 bp):
GCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTTGTG
Found at i:43659482 original size:100 final size:100
Alignment explanation
Indices: 43659305--43659826 Score: 674
Period size: 100 Copynumber: 5.2 Consensus size: 100
43659295 CCGCTCCACA
43659305 TTGTGGCTTTAATCTGCTT-CACTGCA-CTGCCTGGGAGTGTAAGATTCGCTGCTGTAGCTTTAA
1 TTGTGGCTTTAATCTG-TTCCACTGCACCT-CCTGGGAG-GTAAGATTCGCTGCTGTAGCTTTAA
* *
43659368 TATTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCA
63 TCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
* * * *
43659406 TTATGGCTTTAATCTGTTCAACTGCACCTCCTGGGAGGTAAGATTTGCTGTTGTAGCTTTAATCT
1 TTGTGGCTTTAATCTGTTCCACTGCACCTCCTGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCT
*
43659471 TTTTAACCGCAATGTCAGGGAGGCGAGATTCACCG
66 TTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
* * * *
43659506 TTGTGGCTTTAATCTGTTCCACTGCACCGCCTAGGAGGTAGGATTCGCTGCTATAGCTTTAATCT
1 TTGTGGCTTTAATCTGTTCCACTGCACCTCCTGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCT
43659571 TTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
66 TTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
* * *
43659606 TTGTGCCTTTAATCTGTTCCACTGCACCGT-TTTGGAGGTAAGATTCGCTGCTGTAGCTTTAATC
1 TTGTGGCTTTAATCTGTTCCACTGCACC-TCCTGGGAGGTAAGATTCGCTGCTGTAGCTTTAATC
*
43659670 TTTTTAACCACAATGTCAGGG-GAGCAAGATTCACCG
65 TTTTTAACCGCAATGTCAGGGAG-GCAAGATTCACCG
* * * * * * * * * *
43659706 TTGTGGCTTTAATCTGTTCCACTGCATCGCCAGGGAAGTAACACTCACCGCTGTGGCTTTAGTCT
1 TTGTGGCTTTAATCTGTTCCACTGCACCTCCTGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCT
* * * * * *
43659771 TTTTAACTGAAATGTCGGGGAAGCAAGATACGCCG
66 TTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
* *
43659806 TCGTGGCTTTAATCTGCTCCA
1 TTGTGGCTTTAATCTGTTCCA
43659827 TTACATCGCC
Statistics
Matches: 370, Mismatches: 45, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
99 1 0.00
100 338 0.91
101 29 0.08
102 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (100 bp):
TTGTGGCTTTAATCTGTTCCACTGCACCTCCTGGGAGGTAAGATTCGCTGCTGTAGCTTTAATCT
TTTTAACCGCAATGTCAGGGAGGCAAGATTCACCG
Found at i:43660060 original size:44 final size:45
Alignment explanation
Indices: 43659994--43660648 Score: 161
Period size: 44 Copynumber: 15.0 Consensus size: 45
43659984 ACTTGATGCG
* * * * *
43659994 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTGA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGAT-CTACTAGCTTCA
* *
43660038 ATCTGCTCCACTGTAATCTCAGAAAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * ** * *
43660082 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTA-GCTTCA
* ** * * * * *
43660128 GTCTATTCCACTGTAACCTCAGGGAGATAAGA-C--CTA-ATGCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * * * * *
43660169 ATCTACTCTACTGTAA-CTTCAAAGAGATAAGATC-ATTTA-TTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATCTA-CTAGCTTCA
* * * * * * *
43660213 ATCCGCTTCACTGTAATCTTAGGGAGATAGGAT-TACCAACTTCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * * * * *
43660257 ATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCTGA-AATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCT-ACTA-GCTTCA
* ** * ** * * * * *
43660303 GTCTATTCCACTATAATCTTTG-GAGACAAG-GC--CT-GATGCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * * * *
43660343 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATC--CTTGATTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGATCTACTAG-CTTCA
* * * * * * * *
43660387 ATCCGCTCTACTGTACTCTTAGGGAGATAGGAT-TACCAACTTCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * * * * *
43660431 ATTTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTCG
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCT-ACTA-GCTTCA
* ** * * * *
43660477 GTCTATTCCACTGTAATCTCATG-GAGACAAGA-C--CT-GATGCG
1 ATCTGCTCCACTGTAATCTCA-GAGAGATAAGATCTACTAGCTTCA
* * * * *
43660518 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTA
1 ATCTGCTCCACTGTAATC-TCAGAGAGATAAGAT-CTACTAGCTTCA
* *
43660562 ATCTGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCA
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
* * * *
43660606 ATATGCTCCGCTGTAATCTCAAAGAGATAAGATTTA-TAGCTTC
1 ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTC
43660649 CAACCTACTT
Statistics
Matches: 439, Mismatches: 133, Indels: 78
0.68 0.20 0.12
Matches are distributed among these distances:
39 1 0.00
40 20 0.05
41 62 0.14
42 6 0.01
43 8 0.02
44 239 0.54
45 23 0.05
46 79 0.18
47 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (45 bp):
ATCTGCTCCACTGTAATCTCAGAGAGATAAGATCTACTAGCTTCA
Found at i:43660160 original size:175 final size:175
Alignment explanation
Indices: 43659869--43660638 Score: 1209
Period size: 175 Copynumber: 4.4 Consensus size: 175
43659859 TTCGGTCTAT
*
43659869 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * *
43659934 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGAAGATAAGACTTGATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGACAAGACCTGATGCGATCTA
* *
43659999 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTGAATCTGC
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
** *
43660044 TCCACTGTAATCTCAGAAAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* * * * *
43660109 TAAGATCTAAAATTCTTCGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGACAAGACCTGATGCGATCTA
* *
43660174 CTCTACTGTAACTTCAAAGAGATAAGATCATTTATTTTAATCCGC
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* * * *
43660219 TTCACTGTAATCTTAGGGAGATAGGATTACCAACTTCAATCTGCTCCGCTGTAACCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
** *
43660284 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCT-TTGGAGACAAGGCCTGATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGACAAGACCTGATGCGATCTA
*
43660348 CTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGC
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* * * * *
43660393 TCTACTGTACTCTTAGGGAGATAGGATTACCAACTTCAATTTGCTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
43660458 TAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCATGGAGACAAGACCTGATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGACAAGACCTGATGCGATCTA
*
43660523 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGC
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
* * **
43660568 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTCAAAGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
43660633 TAAGAT
66 TAAGAT
43660639 TTATAGCTTC
Statistics
Matches: 544, Mismatches: 50, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
174 160 0.29
175 384 0.71
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (175 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGACAAGACCTGATGCGATCTA
CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGC
Found at i:43660511 original size:349 final size:350
Alignment explanation
Indices: 43659869--43660638 Score: 1236
Period size: 349 Copynumber: 2.2 Consensus size: 350
43659859 TTCGGTCTAT
*
43659869 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGTTCCGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
* *
43659934 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGAAGATAAGACTTGATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGAAGACAAGACCTGATGCGATCTA
* *
43659999 CTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTGAATCTGCTCCACTGTAATCTCAGAAAG
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTGAATCCGCTCCACTGTAATCTCAGAAAG
* *
43660064 ATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGG
196 ATAGGATTACCAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGG
*
43660129 TCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAAAGA
261 TCTATTCCACTGTAACCTCAGGGAGACAAGACCTAATGCGATCTACTCTACTGTAACTTCAAAGA
43660194 GATAAGATCATTTATTTTAATCCGC
326 GATAAGATCATTTATTTTAATCCGC
* * * *
43660219 TTCACTGTAATCTTAGGGAGATAGGATTACCAACTTCAATCTGCTCCGCTGTAACCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
** *
43660284 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTTTGG-AGACAAGGCCTGATGCGATCTA
66 TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGAAGACAAGACCTGATGCGATCTA
* * * * **
43660348 CTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGCTCTACTGTACTCTTAGGGAG
131 CTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTGAATCCGCTCCACTGTAATCTCAGAAAG
* *
43660413 ATAGGATTACCAACTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
196 ATAGGATTACCAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGG
* * * *
43660478 TCTATTCCACTGTAATCTCATGGAGACAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
261 TCTATTCCACTGTAACCTCAGGGAGACAAGACCTAATGCGATCTACTCTACTGTAACTTCAAAGA
* *
43660543 GATAAGATCCTTTATTTTAATCTGC
326 GATAAGATCATTTATTTTAATCCGC
* * **
43660568 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATATGCTCCGCTGTAATCTCAAAGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
43660633 TAAGAT
66 TAAGAT
43660639 TTATAGCTTC
Statistics
Matches: 383, Mismatches: 37, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
349 283 0.74
350 100 0.26
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (350 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACCAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTCTATTCCACTATAATCTCAGGAAGACAAGACCTGATGCGATCTA
CTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTGAATCCGCTCCACTGTAATCTCAGAAAG
ATAGGATTACCAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGG
TCTATTCCACTGTAACCTCAGGGAGACAAGACCTAATGCGATCTACTCTACTGTAACTTCAAAGA
GATAAGATCATTTATTTTAATCCGC
Found at i:43662091 original size:7 final size:7
Alignment explanation
Indices: 43662081--43662122 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
43662071 CTATTTTTAC
43662081 TTTTTCA
1 TTTTTCA
43662088 TTTTTCA
1 TTTTTCA
43662095 TTTTTTCA
1 -TTTTTCA
43662103 -TTTTCA
1 TTTTTCA
*
43662109 CTTTTCA
1 TTTTTCA
43662116 TTTTTCA
1 TTTTTCA
43662123 CATTTTTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 6 0.19
7 19 0.59
8 7 0.22
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTTCA
Found at i:43662092 original size:14 final size:14
Alignment explanation
Indices: 43662073--43662120 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
43662063 TAGCCTCTCT
43662073 ATTTTTACTTTTTC
1 ATTTTTACTTTTTC
*
43662087 ATTTTTCATTTTTTC
1 ATTTTT-ACTTTTTC
*
43662102 ATTTTCAC-TTTTC
1 ATTTTTACTTTTTC
43662115 ATTTTT
1 ATTTTT
43662121 CACATTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 10 0.34
14 7 0.24
15 12 0.41
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTTTACTTTTTC
Found at i:43662097 original size:21 final size:21
Alignment explanation
Indices: 43662073--43662129 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
43662063 TAGCCTCTCT
*
43662073 ATTTTTACTTTTTCATTTTTC
1 ATTTTTACTTTTTCACTTTTC
* *
43662094 ATTTTTTCATTTTCACTTTTC
1 ATTTTTACTTTTTCACTTTTC
43662115 ATTTTTCACATTTTT
1 ATTTTT-AC-TTTTT
43662130 TTAACTCAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 24 0.83
22 1 0.03
23 4 0.14
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (21 bp):
ATTTTTACTTTTTCACTTTTC
Found at i:43662121 original size:14 final size:15
Alignment explanation
Indices: 43662073--43662128 Score: 64
Period size: 14 Copynumber: 3.9 Consensus size: 15
43662063 TAGCCTCTCT
*
43662073 ATTTTT-ACTTTTTC
1 ATTTTTCACATTTTC
**
43662087 ATTTTTCATTTTTTC
1 ATTTTTCACATTTTC
43662102 A-TTTTCAC-TTTTC
1 ATTTTTCACATTTTC
43662115 ATTTTTCACATTTT
1 ATTTTTCACATTTT
43662129 TTTAACTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
13 6 0.16
14 19 0.51
15 12 0.32
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTTCACATTTTC
Found at i:43663005 original size:6 final size:6
Alignment explanation
Indices: 43662996--43663041 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
43662986 TTTTTCTTTT
* * * *
43662996 TTTTAA TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
43663042 TGTTTTTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.17, C:0.07, G:0.09, T:0.67
Consensus pattern (6 bp):
TTTTGA
Found at i:43667514 original size:21 final size:21
Alignment explanation
Indices: 43667485--43667524 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43667475 ATAAGTTAGG
43667485 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
43667506 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
43667525 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:43667790 original size:12 final size:12
Alignment explanation
Indices: 43667768--43667814 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
43667758 GAGGTGACAC
43667768 AAAAATAAAAATA
1 AAAAAT-AAAATA
43667781 AAAAATAAAATA
1 AAAAATAAAATA
*
43667793 AAATAA-ATAATA
1 AAA-AATAAAATA
*
43667805 AATAATAAAA
1 AAAAATAAAA
43667815 CGAAGTATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 2 0.07
12 19 0.66
13 8 0.28
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:43667795 original size:24 final size:24
Alignment explanation
Indices: 43667769--43667814 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
43667759 AGGTGACACA
43667769 AAAATAAA-AATAAAAAATAAAAT
1 AAAATAAATAATAAAAAATAAAAT
*
43667792 AAAATAAATAATAAATAATAAAA
1 AAAATAAATAATAAAAAATAAAA
43667815 CGAAGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (24 bp):
AAAATAAATAATAAAAAATAAAAT
Found at i:43667797 original size:17 final size:18
Alignment explanation
Indices: 43667769--43667806 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
43667759 AGGTGACACA
43667769 AAAATAAAAATAAAAAAT
1 AAAATAAAAATAAAAAAT
*
43667787 AAAAT-AAAATAAATAAT
1 AAAATAAAAATAAAAAAT
43667804 AAA
1 AAA
43667807 TAATAAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (18 bp):
AAAATAAAAATAAAAAAT
Found at i:43670721 original size:38 final size:38
Alignment explanation
Indices: 43670676--43670766 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 38
43670666 CACAATTAAA
* *
43670676 CCTAGTGGCAATGGATCAAAACCAG-A-ACCCCAATTCAC
1 CCTAGTGGCAATGG-TCAAAA-CAGAATACCACAATGCAC
43670714 CAC-AGTGGCAATAGGTCAAAACAGAATACCACAATGCAC
1 C-CTAGTGGCAAT-GGTCAAAACAGAATACCACAATGCAC
43670753 CCTAGTGGCAATGG
1 CCTAGTGGCAATGG
43670767 GTTAAAAACC
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
37 3 0.07
38 20 0.43
39 23 0.50
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.15
Consensus pattern (38 bp):
CCTAGTGGCAATGGTCAAAACAGAATACCACAATGCAC
Found at i:43673830 original size:20 final size:21
Alignment explanation
Indices: 43673805--43673844 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
43673795 ACATAATTCG
*
43673805 ATATTATA-CTATTTCAAACC
1 ATATTATATATATTTCAAACC
43673825 ATATTATATATATTTCAAAC
1 ATATTATATATATTTCAAAC
43673845 GTAATGTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (21 bp):
ATATTATATATATTTCAAACC
Found at i:43674272 original size:10 final size:9
Alignment explanation
Indices: 43674257--43674305 Score: 57
Period size: 8 Copynumber: 5.6 Consensus size: 9
43674247 TATTAAATAC
43674257 ATAAATTTA
1 ATAAATTTA
43674266 TATAAATTT-
1 -ATAAATTTA
* *
43674275 ATATATATA
1 ATAAATTTA
43674284 ATAAATTTA
1 ATAAATTTA
43674293 ATAAA-TTA
1 ATAAATTTA
43674301 ATAAA
1 ATAAA
43674306 ACTTGGTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
8 14 0.41
9 12 0.35
10 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATAAATTTA
Found at i:43674272 original size:26 final size:24
Alignment explanation
Indices: 43674243--43674305 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 24
43674233 TAAGTAAATC
43674243 AAATTATTAAATACATAAATTTATAT
1 AAATTATTAAATA-ATAAATTTA-AT
*
43674269 AAATTTATATATATAATAAATTTAAT
1 AAA-TTAT-TAAATAATAAATTTAAT
*
43674295 AAATTAATAAA
1 AAATTATTAAA
43674306 ACTTGGTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
24 3 0.09
25 3 0.09
26 8 0.25
27 13 0.41
28 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
AAATTATTAAATAATAAATTTAAT
Found at i:43674289 original size:17 final size:17
Alignment explanation
Indices: 43674257--43674305 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
43674247 TATTAAATAC
43674257 ATAAATTTATATAAATTT-
1 ATAAA-TTA-ATAAATTTA
*
43674275 ATATATATAATAAATTTA
1 ATAAAT-TAATAAATTTA
43674293 ATAAATTAATAAA
1 ATAAATTAATAAA
43674306 ACTTGGTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATAAATTAATAAATTTA
Found at i:43675124 original size:13 final size:13
Alignment explanation
Indices: 43675103--43675153 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
43675093 AGTTCTTCAT
*
43675103 TGCTCTTGAAAAG
1 TGCTTTTGAAAAG
43675116 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
43675129 TGCTATGGAAAAG
1 TGCTTTTGAAAAG
43675142 TGCTTTTGAAAA
1 TGCTTTTGAAAA
43675154 TTTTGATTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:43677282 original size:72 final size:72
Alignment explanation
Indices: 43677166--43677354 Score: 215
Period size: 72 Copynumber: 2.6 Consensus size: 72
43677156 TCACCTGTGA
* * * *
43677166 ATAAATTTC-ATATCC-AAAATCACATATAAAAAACTATTGATAAAACTA-ATTTAGTA-AAAAA
1 ATAAA-TTCAATATCCAAAAACCAAACATAAAAAACTATTGATAAAACTAGA-TTA-CACAAAAA
*
43677227 TAAGTAGAAC
63 CAAGTAGAAC
* * * * *
43677237 ATAAATTCAATATCTAAAGACCAAACATAAACAACTATTAATAAAACTAGATTACACATAAACAA
1 ATAAATTCAATATCCAAAAACCAAACATAAAAAACTATTGATAAAACTAGATTACACAAAAACAA
43677302 GTAGAAC
66 GTAGAAC
* *
43677309 ATAAATTCAATATCCAAAAACCAAACATAAATAACTACTGATAAAA
1 ATAAATTCAATATCCAAAAACCAAACATAAAAAACTATTGATAAAA
43677355 ACATACTTCG
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
70 3 0.03
71 11 0.11
72 84 0.85
73 1 0.01
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATAAATTCAATATCCAAAAACCAAACATAAAAAACTATTGATAAAACTAGATTACACAAAAACAA
GTAGAAC
Found at i:43679956 original size:20 final size:20
Alignment explanation
Indices: 43679933--43680001 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 20
43679923 CATTAATACT
43679933 GTTATTTGTTCATGTATATA
1 GTTATTTGTTCATGTATATA
43679953 GTTAAATTTTTGATTCAT-TA-ATA
1 GTT--A--TTTG-TTCATGTATATA
43679976 CTGTTATTTGTTCATGTATATA
1 --GTTATTTGTTCATGTATATA
43679998 GTTA
1 GTTA
43680002 AATTTTTGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 18
0.69 0.00 0.31
Matches are distributed among these distances:
20 12 0.30
21 6 0.15
22 4 0.10
23 4 0.10
24 6 0.15
25 8 0.20
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.54
Consensus pattern (20 bp):
GTTATTTGTTCATGTATATA
Found at i:43679969 original size:25 final size:24
Alignment explanation
Indices: 43679937--43680009 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
43679927 AATACTGTTA
43679937 TTTGTTCATGTATATAGTTAAATT
1 TTTGTTCATGTATATAGTTAAATT
43679961 TTTGATTCAT-TA-ATACTGTT--A--
1 TTTG-TTCATGTATATA--GTTAAATT
43679982 TTTGTTCATGTATATAGTTAAATT
1 TTTGTTCATGTATATAGTTAAATT
43680006 TTTG
1 TTTG
43680010 ATACACATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 18
0.69 0.00 0.31
Matches are distributed among these distances:
20 8 0.20
21 6 0.15
22 4 0.10
23 4 0.10
24 10 0.25
25 8 0.20
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.55
Consensus pattern (24 bp):
TTTGTTCATGTATATAGTTAAATT
Found at i:43679985 original size:45 final size:45
Alignment explanation
Indices: 43679921--43680011 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
43679911 GGCAACAAGC
43679921 TTCATTAATACTGTTATTTGTTCATGTATATAGTTAAATTTTTGA
1 TTCATTAATACTGTTATTTGTTCATGTATATAGTTAAATTTTTGA
43679966 TTCATTAATACTGTTATTTGTTCATGTATATAGTTAAATTTTTGA
1 TTCATTAATACTGTTATTTGTTCATGTATATAGTTAAATTTTTGA
43680011 T
1 T
43680012 ACACATGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.54
Consensus pattern (45 bp):
TTCATTAATACTGTTATTTGTTCATGTATATAGTTAAATTTTTGA
Found at i:43683006 original size:20 final size:20
Alignment explanation
Indices: 43682952--43683006 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
43682942 CAAATATATA
*
43682952 TAATATTTTAATTTGTTAGGT
1 TAATA-TTTAATATGTTAGGT
* * **
43682973 TTATGTTTTCTATGTTAGGT
1 TAATATTTAATATGTTAGGT
43682993 TAATATTTAATATG
1 TAATATTTAATATG
43683007 AGTTATATAT
Statistics
Matches: 25, Mismatches: 9, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.27, C:0.02, G:0.15, T:0.56
Consensus pattern (20 bp):
TAATATTTAATATGTTAGGT
Found at i:43683430 original size:13 final size:13
Alignment explanation
Indices: 43683409--43683520 Score: 124
Period size: 13 Copynumber: 8.8 Consensus size: 13
43683399 ACAATCAAAA
43683409 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
43683422 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
*
43683435 TTATCAAAAGCAC
1 TTTTCAAAAGCAC
*
43683448 TTTTTAATAA-CAC
1 TTTTCAA-AAGCAC
43683461 TTTT-AAAAGCAC
1 TTTTCAAAAGCAC
*
43683473 TTTTCAAAAGCAT
1 TTTTCAAAAGCAC
*
43683486 TTTTTAATAA-CAC
1 TTTTCAA-AAGCAC
43683499 TTTT-AAAAGCAC
1 TTTTCAAAAGCAC
*
43683511 TTTTTAAAAG
1 TTTTCAAAAG
43683521 TAATGAAGAA
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.05
12 18 0.21
13 60 0.70
14 4 0.05
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:43683513 original size:38 final size:38
Alignment explanation
Indices: 43683427--43683520 Score: 161
Period size: 38 Copynumber: 2.5 Consensus size: 38
43683417 AGCACTTCTC
*
43683427 AAAAGCACTTATCAAAAGCACTTTTTAATAACACTTTT
1 AAAAGCACTTTTCAAAAGCACTTTTTAATAACACTTTT
*
43683465 AAAAGCACTTTTCAAAAGCATTTTTTAATAACACTTTT
1 AAAAGCACTTTTCAAAAGCACTTTTTAATAACACTTTT
*
43683503 AAAAGCACTTTTTAAAAG
1 AAAAGCACTTTTCAAAAG
43683521 TAATGAAGAA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (38 bp):
AAAAGCACTTTTCAAAAGCACTTTTTAATAACACTTTT
Found at i:43683514 original size:26 final size:26
Alignment explanation
Indices: 43683409--43683520 Score: 106
Period size: 25 Copynumber: 4.4 Consensus size: 26
43683399 ACAATCAAAA
* * *
43683409 TTTTCAAAAGCACTTCTCAAAAGCAC
1 TTTTTAAAAGCACTTTTCAAAAGCAT
* * *
43683435 TTATCAAAAGCACTTTTTAATAA-CA-
1 TTTTTAAAAGCACTTTTCAA-AAGCAT
*
43683460 CTTTTAAAAGCACTTTTCAAAAGCAT
1 TTTTTAAAAGCACTTTTCAAAAGCAT
*
43683486 TTTTTAATAA-CACTTTT-AAAAGCAC
1 TTTTTAA-AAGCACTTTTCAAAAGCAT
43683511 TTTTTAAAAG
1 TTTTTAAAAG
43683521 TAATGAAGAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
24 4 0.06
25 32 0.44
26 32 0.44
27 4 0.06
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (26 bp):
TTTTTAAAAGCACTTTTCAAAAGCAT
Found at i:43685246 original size:12 final size:12
Alignment explanation
Indices: 43685229--43685259 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
43685219 GAATATAGTT
*
43685229 GCCCATCTTCTG
1 GCCCATATTCTG
43685241 GCCCATATTCTG
1 GCCCATATTCTG
43685253 GCCCATA
1 GCCCATA
43685260 AGGGTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.39, G:0.16, T:0.29
Consensus pattern (12 bp):
GCCCATATTCTG
Found at i:43686075 original size:79 final size:75
Alignment explanation
Indices: 43685980--43686130 Score: 230
Period size: 79 Copynumber: 2.0 Consensus size: 75
43685970 TCCCTTTAAA
* *
43685980 AAATAAAAAAATAAAATTTAATTTAGATGATAAATTTATTAAGGTTTCCTTAAAAGAAATTGAGG
1 AAATAAAAAAATAAAATTTAATTTAGATGATAAATCTATCAAGGTTT-CTTAAAAGAAATTGAGG
43686045 ATTTCAACAGGG
65 -TTTCAACAGGG
* *
43686057 AAATAAAATAAAATAAAATTTAATTTAGATGGTGAATCTATCAAGGTTTCTTAAAAGAAATTGAG
1 AAAT-AAA-AAAATAAAATTTAATTTAGATGATAAATCTATCAAGGTTTCTTAAAAGAAATTGAG
43686122 GTTTCAACA
64 GTTTCAACA
43686131 AGGCATCACT
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
77 12 0.18
78 20 0.29
79 36 0.53
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.32
Consensus pattern (75 bp):
AAATAAAAAAATAAAATTTAATTTAGATGATAAATCTATCAAGGTTTCTTAAAAGAAATTGAGGT
TTCAACAGGG
Found at i:43686946 original size:20 final size:19
Alignment explanation
Indices: 43686909--43686946 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
43686899 TTGACAAAAT
*
43686909 AAAACCACGAATTGTGGAC
1 AAAACCACGAAATGTGGAC
43686928 AAAACCACGATAATGTGGA
1 AAAACCACGA-AATGTGGA
43686947 ATGAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (19 bp):
AAAACCACGAAATGTGGAC
Found at i:43687729 original size:7 final size:7
Alignment explanation
Indices: 43687717--43687768 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
43687707 CCAAGAACAA
43687717 TTCATGT
1 TTCATGT
43687724 TTCATGT
1 TTCATGT
*
43687731 TTCACGAT
1 TTCATG-T
43687739 TTCATGT
1 TTCATGT
**
43687746 TTCATAC
1 TTCATGT
*
43687753 TGCATGT
1 TTCATGT
43687760 TTCATGT
1 TTCATGT
43687767 TT
1 TT
43687769 TCTTCTGTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
7 30 0.83
8 6 0.17
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.52
Consensus pattern (7 bp):
TTCATGT
Found at i:43687867 original size:7 final size:7
Alignment explanation
Indices: 43687824--43687848 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
43687814 CATTATACTG
43687824 CATGTTT
1 CATGTTT
43687831 CATGTTT
1 CATGTTT
43687838 CATGTTT
1 CATGTTT
43687845 CATG
1 CATG
43687849 CAATACTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (7 bp):
CATGTTT
Found at i:43688073 original size:37 final size:37
Alignment explanation
Indices: 43688019--43688124 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
43688009 TTATGTGTTA
*
43688019 AAAAGACTTATGTAATGTTTTTAATTATTTAGTGATTC
1 AAAA-ACTTATGTAATGTTTTTAATTATATAGTGATTC
* * *
43688057 AAAAATTTATGTAATGTTTTTAGTTATGTAGTGATTC
1 AAAAACTTATGTAATGTTTTTAATTATATAGTGATTC
*
43688094 AAAGACTTATG-AAT-TTTTTAAATTATATAGT
1 AAAAACTTATGTAATGTTTTT-AATTATATAGT
43688125 AATTTAAATC
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
35 5 0.08
36 12 0.20
37 39 0.65
38 4 0.07
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (37 bp):
AAAAACTTATGTAATGTTTTTAATTATATAGTGATTC
Found at i:43688149 original size:9 final size:9
Alignment explanation
Indices: 43688137--43688211 Score: 89
Period size: 9 Copynumber: 8.4 Consensus size: 9
43688127 TTTAAATCGA
*
43688137 TTAAGTGGG
1 TTAAGTCGG
*
43688146 TTAAATCGG
1 TTAAGTCGG
43688155 TTAAGTCGG
1 TTAAGTCGG
*
43688164 TTAAATCGG
1 TTAAGTCGG
43688173 TTAAGTCGG
1 TTAAGTCGG
43688182 TTAA-TCGG
1 TTAAGTCGG
* *
43688190 TTAAATAGG
1 TTAAGTCGG
*
43688199 TTAAATCGG
1 TTAAGTCGG
43688208 TTAA
1 TTAA
43688212 TTTTTAACCA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
8 8 0.14
9 50 0.86
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (9 bp):
TTAAGTCGG
Found at i:43688151 original size:18 final size:18
Alignment explanation
Indices: 43688128--43688211 Score: 125
Period size: 18 Copynumber: 4.7 Consensus size: 18
43688118 ATATAGTAAT
* *
43688128 TTAAATCGATTAAGTGGG
1 TTAAATCGGTTAAGTCGG
43688146 TTAAATCGGTTAAGTCGG
1 TTAAATCGGTTAAGTCGG
43688164 TTAAATCGGTTAAGTCGG
1 TTAAATCGGTTAAGTCGG
* *
43688182 TT-AATCGGTTAAATAGG
1 TTAAATCGGTTAAGTCGG
43688199 TTAAATCGGTTAA
1 TTAAATCGGTTAA
43688212 TTTTTAACCA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
17 15 0.25
18 46 0.75
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (18 bp):
TTAAATCGGTTAAGTCGG
Found at i:43688201 original size:35 final size:36
Alignment explanation
Indices: 43688128--43688211 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 36
43688118 ATATAGTAAT
* * * *
43688128 TTAAATCGATTAAGTGGGTTAAATCGGTTAAGTCGG
1 TTAAATCGGTTAAGTCGGTTAAATCGGTTAAATAGG
43688164 TTAAATCGGTTAAGTCGGTT-AATCGGTTAAATAGG
1 TTAAATCGGTTAAGTCGGTTAAATCGGTTAAATAGG
43688199 TTAAATCGGTTAA
1 TTAAATCGGTTAA
43688212 TTTTTAACCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
35 26 0.59
36 18 0.41
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (36 bp):
TTAAATCGGTTAAGTCGGTTAAATCGGTTAAATAGG
Found at i:43688388 original size:12 final size:12
Alignment explanation
Indices: 43688371--43688395 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43688361 AACTAATTCG
43688371 GGTCGGTTAACC
1 GGTCGGTTAACC
43688383 GGTCGGTTAACC
1 GGTCGGTTAACC
43688395 G
1 G
43688396 AATGCACGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:43688849 original size:20 final size:20
Alignment explanation
Indices: 43688824--43688939 Score: 62
Period size: 22 Copynumber: 5.8 Consensus size: 20
43688814 CTAGTGCTTT
43688824 TCATTTTCCAGATTTTGAAG
1 TCATTTTCCAGATTTTGAAG
* *
43688844 TCATTTT-AATATATTTGAAG
1 TCATTTTCCAGAT-TTTGAAG
*** *
43688864 TCATTTT---GAAGGT-AAT
1 TCATTTTCCAGATTTTGAAG
* *
43688880 TCATTTTCCAGACTTTGGCATG
1 TCATTTTCCAGA-TTTTG-AAG
*
43688902 TCATTTTCCAGATTTTGGCATG
1 TCATTTTCCAGATTTT-G-AAG
*
43688924 TCATTTTTCAGATTTT
1 TCATTTTCCAGATTTT
43688940 ATTTTATTTC
Statistics
Matches: 73, Mismatches: 15, Indels: 14
0.72 0.15 0.14
Matches are distributed among these distances:
16 9 0.12
17 1 0.01
18 1 0.01
19 5 0.07
20 21 0.29
21 3 0.04
22 33 0.45
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (20 bp):
TCATTTTCCAGATTTTGAAG
Found at i:43688873 original size:11 final size:11
Alignment explanation
Indices: 43688835--43688874 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
43688825 CATTTTCCAG
43688835 ATTTTGAAGTC
1 ATTTTGAAGTC
43688846 ATTTT-AA-T-
1 ATTTTGAAGTC
43688854 ATATTTGAAGTC
1 AT-TTTGAAGTC
43688866 ATTTTGAAG
1 ATTTTGAAG
43688875 GTAATTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.08
9 4 0.16
10 4 0.16
11 13 0.52
12 2 0.08
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (11 bp):
ATTTTGAAGTC
Found at i:43688936 original size:22 final size:22
Alignment explanation
Indices: 43688880--43688939 Score: 102
Period size: 22 Copynumber: 2.7 Consensus size: 22
43688870 TGAAGGTAAT
*
43688880 TCATTTTCCAGACTTTGGCATG
1 TCATTTTCCAGATTTTGGCATG
43688902 TCATTTTCCAGATTTTGGCATG
1 TCATTTTCCAGATTTTGGCATG
*
43688924 TCATTTTTCAGATTTT
1 TCATTTTCCAGATTTT
43688940 ATTTTATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (22 bp):
TCATTTTCCAGATTTTGGCATG
Found at i:43709424 original size:25 final size:25
Alignment explanation
Indices: 43709368--43709425 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
43709358 AACCATTTCA
* *
43709368 AACCCAATTGCCTAAACATCCAGCC
1 AACCCATTTGCCTAAACATCAAGCC
43709393 AACCCATTTGCCTAAACATCAAGCC
1 AACCCATTTGCCTAAACATCAAGCC
43709418 AACCCATT
1 AACCCATT
43709426 CTTGCATGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.36, C:0.38, G:0.07, T:0.19
Consensus pattern (25 bp):
AACCCATTTGCCTAAACATCAAGCC
Found at i:43711624 original size:50 final size:50
Alignment explanation
Indices: 43711564--43711906 Score: 330
Period size: 51 Copynumber: 6.8 Consensus size: 50
43711554 ATTTATCATT
* * *
43711564 CGATACACGTAGTAGCCTTCACATAGTGCTACACACGTGATCAAGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * **
43711614 TGGTTCACGTAGTAGCCTTCACATAGTACTACACACGTGATAAAGTTTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
43711664 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTA
* * * * * * ***
43711715 CGGTACACATAGTAGCTTTCACTTAGTACTACACATGTGACCATCATTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * *
43711765 TCGATTCACGTAGTAGCCTTCACACAGTACTAGACACGTGACCAAAGCTTCT-
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTA
* * * * * * * ***
43711817 CGGTACACATTGTAGCCTTCACTTAGTACTTCACATGTGACCATCATTTA
1 CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
* * *
43711867 TCGATTCATGTAGTAGACTTCACACAGTACTACACACGTG
1 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
43711907 TTCATCGGTA
Statistics
Matches: 232, Mismatches: 53, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
49 5 0.02
50 85 0.37
51 135 0.58
52 5 0.02
53 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (50 bp):
CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA
Found at i:43711794 original size:102 final size:102
Alignment explanation
Indices: 43711563--43711906 Score: 460
Period size: 102 Copynumber: 3.4 Consensus size: 102
43711553 CATTTATCAT
* * * * * * *
43711563 TCGATACACGTAGTAGCCTTCACATAGTGCTACACACGTGATC-AAG-TTTTATGGTTCACGTAG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * ** ***
43711626 TAGCCTTCACATAGTACTACACACGTGATAAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
*
43711664 -CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
*
43711728 AGCTTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * *
43711765 TCGATTCACGTAGTAGCCTTCACACAGTACTAGACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
*
43711830 AGCCTTCACTTAGTACTTCACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* *
43711867 TCGATTCATGTAGTAGACTTCACACAGTACTACACACGTG
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTG
43711907 TTCATCGGTA
Statistics
Matches: 217, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
100 39 0.18
101 42 0.19
102 136 0.63
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:43719820 original size:12 final size:13
Alignment explanation
Indices: 43719797--43719849 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
43719787 TGCTCCTATG
43719797 CAAGCTATGTTTT
1 CAAGCTATGTTTT
43719810 CAAGC-ATGTTTT
1 CAAGCTATGTTTT
43719822 ACAA-CTATTGTTTTT
1 -CAAGCTA-TG-TTTT
*
43719837 TAAGCTATGTTTT
1 CAAGCTATGTTTT
43719850 TAGGAGCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 8 0.24
13 13 0.38
14 6 0.18
15 7 0.21
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (13 bp):
CAAGCTATGTTTT
Found at i:43719847 original size:14 final size:14
Alignment explanation
Indices: 43719797--43719850 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
43719787 TGCTCCTATG
43719797 CAAGCTATG-TTTT
1 CAAGCTATGTTTTT
*
43719810 CAAGC-ATGTTTTA
1 CAAGCTATGTTTTT
43719823 CAA-CTATTGTTTTT
1 CAAGCTA-TGTTTTT
*
43719837 TAAGCTATGTTTTT
1 CAAGCTATGTTTTT
43719851 AGGAGCTCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 4 0.12
13 12 0.35
14 15 0.44
15 3 0.09
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (14 bp):
CAAGCTATGTTTTT
Found at i:43724045 original size:84 final size:85
Alignment explanation
Indices: 43723902--43724077 Score: 257
Period size: 88 Copynumber: 2.0 Consensus size: 85
43723892 TGTTATACTC
* *
43723902 TAAAATCATGTTAACAGTTCAGTGTTGGAGAAGAAGCAAAAATTGATTGATT-AAAAAAAAGAGT
1 TAAAATCATGTTAACAGTTCAGTGTTGGAGAAAAAGCAAAAATTGATCGATTAAAAAAAAAGAGT
* *
43723966 TGTGCATGCAACAGTAGTGA
66 TGTGCATGCAACAATAGAGA
*
43723986 TAAAATCATGTTAAGAGTTC-GTTGTTGGAGGAAAAAGCAAAAATTGATCGATTAGAAAAAAAAA
1 TAAAATCATGTTAACAGTTCAG-TGTTGGA-GAAAAAGCAAAAATTGATCGATT--AAAAAAAAA
43724050 GAGTTGTGCATGCAACAATAGAGA
62 GAGTTGTGCATGCAACAATAGAGA
43724074 TAAA
1 TAAA
43724078 TAGCTAACTT
Statistics
Matches: 82, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
83 1 0.01
84 26 0.32
85 21 0.26
88 34 0.41
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (85 bp):
TAAAATCATGTTAACAGTTCAGTGTTGGAGAAAAAGCAAAAATTGATCGATTAAAAAAAAAGAGT
TGTGCATGCAACAATAGAGA
Found at i:43727996 original size:20 final size:20
Alignment explanation
Indices: 43727972--43728040 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
43727962 CTTGTACAGG
*
43727972 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTA
* *
43727992 TTTGCACTTCGATGCCTCTAA
1 TTTGCACTTTGGTGCCTCT-A
43728013 TTT-CACATTT-GTGCCTCTA
1 TTTGCAC-TTTGGTGCCTCTA
*
43728032 TCTGCACTT
1 TTTGCACTT
43728041 CGATCCCTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
19 5 0.12
20 30 0.75
21 5 0.12
ACGTcount: A:0.13, C:0.28, G:0.16, T:0.43
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTA
Found at i:43731209 original size:33 final size:33
Alignment explanation
Indices: 43731148--43731213 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
43731138 ACACATTTAG
43731148 ACTCCTTTCTATTAACAAATTTAACATCATTCA
1 ACTCCTTTCTATTAACAAATTTAACATCATTCA
* * *
43731181 ACTCCTTTTTATTTACAACA-TTACCATCATTCA
1 ACTCCTTTCTATTAACAA-ATTTAACATCATTCA
43731214 TTTCTATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (33 bp):
ACTCCTTTCTATTAACAAATTTAACATCATTCA
Found at i:43735130 original size:9 final size:9
Alignment explanation
Indices: 43735118--43735170 Score: 72
Period size: 9 Copynumber: 5.7 Consensus size: 9
43735108 AAATTAACTA
43735118 AATTAACCG
1 AATTAACCG
43735127 AATTAACCGG
1 AATTAACC-G
43735137 AAATTAACCG
1 -AATTAACCG
43735147 AATT-ACCTG
1 AATTAACC-G
43735156 AATTAACCG
1 AATTAACCG
43735165 AATTAA
1 AATTAA
43735171 ATTTTATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
8 3 0.08
9 24 0.60
10 5 0.12
11 8 0.20
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:43735142 original size:20 final size:20
Alignment explanation
Indices: 43735117--43735170 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
43735107 AAAATTAACT
43735117 AAATTAACCGAATTAACCGG
1 AAATTAACCGAATTAACCGG
*
43735137 AAATTAACCGAATT-ACCTG
1 AAATTAACCGAATTAACCGG
43735156 -AATTAACCGAATTAA
1 AAATTAACCGAATTAA
43735171 ATTTTATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 13 0.41
19 5 0.16
20 14 0.44
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.24
Consensus pattern (20 bp):
AAATTAACCGAATTAACCGG
Found at i:43735150 original size:29 final size:29
Alignment explanation
Indices: 43735108--43735164 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
43735098 TTTTGGTTAA
*
43735108 AAATTAACTAAATTAACC-GAATTAACCGG
1 AAATTAACCAAATT-ACCTGAATTAACCGG
*
43735137 AAATTAACCGAATTACCTGAATTAACCG
1 AAATTAACCAAATTACCTGAATTAACCG
43735165 AATTAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.46, C:0.19, G:0.11, T:0.25
Consensus pattern (29 bp):
AAATTAACCAAATTACCTGAATTAACCGG
Found at i:43735643 original size:13 final size:13
Alignment explanation
Indices: 43735625--43735651 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
43735615 TTAGTGTTAG
43735625 AGACTTTAGTTTT
1 AGACTTTAGTTTT
43735638 AGACTTTAGTTTT
1 AGACTTTAGTTTT
43735651 A
1 A
43735652 TTGGGTTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52
Consensus pattern (13 bp):
AGACTTTAGTTTT
Found at i:43735869 original size:18 final size:18
Alignment explanation
Indices: 43735848--43735883 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
43735838 TTCGGTTAAC
43735848 CGATCGATTAACCAAATT
1 CGATCGATTAACCAAATT
* *
43735866 CGATCGGTTAACCGAATT
1 CGATCGATTAACCAAATT
43735884 TTTTCGATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (18 bp):
CGATCGATTAACCAAATT
Found at i:43744285 original size:14 final size:14
Alignment explanation
Indices: 43744266--43744294 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
43744256 CAGAGTGAAG
43744266 AGAGAGAGAGAGAA
1 AGAGAGAGAGAGAA
43744280 AGAGAGAGAGAGAA
1 AGAGAGAGAGAGAA
43744294 A
1 A
43744295 ATAGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAGAA
Found at i:43746888 original size:4 final size:4
Alignment explanation
Indices: 43746879--43746918 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
43746869 TGCAACAATC
43746879 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
43746919 TGAATTCGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:43756550 original size:128 final size:128
Alignment explanation
Indices: 43756322--43756579 Score: 498
Period size: 128 Copynumber: 2.0 Consensus size: 128
43756312 TTTCTTGAGA
43756322 ATGACTCAATTAGTGAGAACGATCTGTCTCGGGACACGATTCCCGTAGGTCAATCTTCCACTTTA
1 ATGACTCAATTAGTGAGAACGATCTGTCTCGGGACACGATTCCCGTAGGTCAATCTTCCACTTTA
*
43756387 GGTGAGAGATTAGTTATCATACATAACACCCATCAAGCTTAACTGGGTGTTGAACAACCAATC
66 GGTGAGAGATTAGTTATCATACATAACACCCATCAAGCTTAACTGGGTATTGAACAACCAATC
*
43756450 ATGACTCAATTAGTGAGAACGATCTGTCTCGGGACACGATTCCCGTAGTTCAATCTTCCACTTTA
1 ATGACTCAATTAGTGAGAACGATCTGTCTCGGGACACGATTCCCGTAGGTCAATCTTCCACTTTA
43756515 GGTGAGAGATTAGTTATCATACATAACACCCATCAAGCTTAACTGGGTATTGAACAACCAATC
66 GGTGAGAGATTAGTTATCATACATAACACCCATCAAGCTTAACTGGGTATTGAACAACCAATC
43756578 AT
1 AT
43756580 TGAAAATCCA
Statistics
Matches: 128, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (128 bp):
ATGACTCAATTAGTGAGAACGATCTGTCTCGGGACACGATTCCCGTAGGTCAATCTTCCACTTTA
GGTGAGAGATTAGTTATCATACATAACACCCATCAAGCTTAACTGGGTATTGAACAACCAATC
Found at i:43759625 original size:25 final size:25
Alignment explanation
Indices: 43759582--43759661 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
43759572 GAAAGCTTAC
*
43759582 CTTACCAATT-CTCAACTCGTATGAG
1 CTTACC-ATTACTCAGCTCGTATGAG
* * *
43759607 CTTACCGTTATTCAGCTCGCATGAG
1 CTTACCATTACTCAGCTCGTATGAG
* * *
43759632 TTTACCATTACTCATCTCATATGAG
1 CTTACCATTACTCAGCTCGTATGAG
43759657 CTTAC
1 CTTAC
43759662 TAATTACAGC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
24 2 0.05
25 41 0.95
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (25 bp):
CTTACCATTACTCAGCTCGTATGAG
Found at i:43761997 original size:39 final size:36
Alignment explanation
Indices: 43761951--43762033 Score: 105
Period size: 36 Copynumber: 2.2 Consensus size: 36
43761941 ATATTAAATT
43761951 TAATATTAAGATAA-TCACTTTAATATTAAATTAATAAAA
1 TAATATTAAGATAAGT-A--TTAA-ATTAAATTAATAAAA
* *
43761990 TACTATTAAGATAAGTATTAAATTAAATTATTAAAA
1 TAATATTAAGATAAGTATTAAATTAAATTAATAAAA
43762026 TAATATTA
1 TAATATTA
43762034 TTTTTGGAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
36 21 0.52
37 4 0.10
39 14 0.35
40 1 0.03
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (36 bp):
TAATATTAAGATAAGTATTAAATTAAATTAATAAAA
Found at i:43762470 original size:19 final size:19
Alignment explanation
Indices: 43762446--43762485 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
43762436 AAAATATCAT
*
43762446 ATTAATTTTAA-TTTATTTG
1 ATTAA-TTTAACTTTACTTG
43762465 ATTAATTTAACTTTACTTG
1 ATTAATTTAACTTTACTTG
43762484 AT
1 AT
43762486 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (19 bp):
ATTAATTTAACTTTACTTG
Found at i:43767784 original size:19 final size:19
Alignment explanation
Indices: 43767750--43767798 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
43767740 ATTTCTCATA
*
43767750 TTATTAT-TAATTAATT-T
1 TTATTATATATTTAATTAT
43767767 CTTATTATATATTTAATTAT
1 -TTATTATATATTTAATTAT
*
43767787 TTATTGTATATT
1 TTATTATATATT
43767799 ATTTTAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 7 0.26
19 19 0.70
20 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTATTATATATTTAATTAT
Found at i:43767804 original size:23 final size:24
Alignment explanation
Indices: 43767747--43767805 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
43767737 CGTATTTCTC
*
43767747 ATATTATTATTAATTAATTTCTTAT
1 ATATTATT-TTAATTAATTTATTAT
*
43767772 -TA-TATATTTAATT-ATTTATTGT
1 ATATTAT-TTTAATTAATTTATTAT
43767794 ATATTATTTTAA
1 ATATTATTTTAA
43767806 ACACAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
22 7 0.24
23 16 0.55
24 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
ATATTATTTTAATTAATTTATTAT
Found at i:43771308 original size:40 final size:40
Alignment explanation
Indices: 43771187--43771335 Score: 144
Period size: 41 Copynumber: 3.7 Consensus size: 40
43771177 TTCGGGGAAA
* * *
43771187 TTAGTGGCG-TTTTTAGTGAAGCGCCGCTAATGCTCTGGT-TA
1 TTAGCGGCGTTTTTTA-AGAAGCGCCGCTAAT-CT-TGGTGTT
*
43771228 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGTTGAGTGTT
1 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATCTTG-GTGTT
* *
43771269 TTAGCGGCGTTTTTTATA-TAGCGCCGCTAATCTAGGTGTT
1 TTAGCGGCGTTTTTTA-AGAAGCGCCGCTAATCTTGGTGTT
* *
43771309 TTAGCGGCATTTTTGT-TGAAGCGCCGC
1 TTAGCGGCGTTTTT-TAAGAAGCGCCGC
43771336 AAAAACAATT
Statistics
Matches: 92, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
39 2 0.02
40 29 0.32
41 54 0.59
42 7 0.08
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.37
Consensus pattern (40 bp):
TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATCTTGGTGTT
Found at i:43774603 original size:13 final size:13
Alignment explanation
Indices: 43774579--43774619 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
43774569 ATTTTGCCAG
*
43774579 ATTTTCTAAATGA
1 ATTTTCTTAATGA
43774592 ATTTT-TTGAATGA
1 ATTTTCTT-AATGA
43774605 ATTTTCTTAATGA
1 ATTTTCTTAATGA
43774618 AT
1 AT
43774620 ATAGTAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 1 0.04
13 22 0.88
14 2 0.08
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (13 bp):
ATTTTCTTAATGA
Found at i:43776716 original size:31 final size:32
Alignment explanation
Indices: 43776657--43776721 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
43776647 GGCAAATTAC
43776657 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
43776689 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
43776720 AA
1 AA
43776722 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:43782299 original size:14 final size:14
Alignment explanation
Indices: 43782282--43782315 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
43782272 TTTTTTTACG
*
43782282 CTTTTTTGCTTCTT
1 CTTTTTTCCTTCTT
*
43782296 CTTTTTTCCTTTTT
1 CTTTTTTCCTTCTT
43782310 CTTTTT
1 CTTTTT
43782316 CTTTTTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (14 bp):
CTTTTTTCCTTCTT
Found at i:43782925 original size:31 final size:32
Alignment explanation
Indices: 43782866--43782930 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
43782856 GGCAAATTAC
43782866 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
43782898 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
43782929 AA
1 AA
43782931 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:43783328 original size:9 final size:9
Alignment explanation
Indices: 43783310--43783417 Score: 64
Period size: 9 Copynumber: 12.2 Consensus size: 9
43783300 CTTATATATA
*
43783310 AACTTGCAT
1 AACTTACAT
43783319 AACTTACAT
1 AACTTACAT
*
43783328 AA-TAACATAAT
1 AACTTAC---AT
43783339 AACTTACAT
1 AACTTACAT
43783348 AA--TACAT
1 AACTTACAT
* *
43783355 AGCATACAT
1 AACTTACAT
43783364 AACTTACAT
1 AACTTACAT
* * *
43783373 AA--GATAG
1 AACTTACAT
*
43783380 AACTTATAT
1 AACTTACAT
*
43783389 AACTTAAAT
1 AACTTACAT
43783398 AACTTACAT
1 AACTTACAT
*
43783407 AATTTACAT
1 AACTTACAT
43783416 AA
1 AA
43783418 AACATAACTC
Statistics
Matches: 77, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
7 10 0.13
8 3 0.04
9 57 0.74
11 4 0.05
12 3 0.04
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Done.