Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 157 of 213
Found at i:47067422 original size:15 final size:15
Alignment explanation
Indices: 47067402--47067430 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
47067392 ATCTTTATCA
47067402 TCAATCTTAACCTCG
1 TCAATCTTAACCTCG
47067417 TCAATCTTAACCTC
1 TCAATCTTAACCTC
47067431 AACATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34
Consensus pattern (15 bp):
TCAATCTTAACCTCG
Found at i:47073834 original size:25 final size:25
Alignment explanation
Indices: 47073796--47073845 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
47073786 AGGAAAATAT
* *
47073796 CGATTTACAGCTCGTGTGAGCATAC
1 CGATTCACAACTCGTGTGAGCATAC
47073821 CGATTCACAACTCGTGTGAGCATAC
1 CGATTCACAACTCGTGTGAGCATAC
47073846 ATGTATAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (25 bp):
CGATTCACAACTCGTGTGAGCATAC
Found at i:47078091 original size:24 final size:24
Alignment explanation
Indices: 47078058--47078109 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
47078048 TTCGTAGGTC
* *
47078058 AAATAAATTATGCTAATAAGTACT
1 AAATAAATTATACTAATAAATACT
*
47078082 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
47078106 AAAT
1 AAAT
47078110 TTTCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:47078804 original size:20 final size:20
Alignment explanation
Indices: 47078779--47078816 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47078769 TTAAGGTATA
*
47078779 ATTAAACTAGTTTAATTATC
1 ATTAAAATAGTTTAATTATC
*
47078799 ATTAAAATTGTTTAATTA
1 ATTAAAATAGTTTAATTA
47078817 ATATAAGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (20 bp):
ATTAAAATAGTTTAATTATC
Found at i:47082803 original size:3 final size:3
Alignment explanation
Indices: 47082795--47082848 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
47082785 ATACATGATT
47082795 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
47082843 ATA ATA
1 ATA ATA
47082849 CAATATTAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:47089002 original size:6 final size:6
Alignment explanation
Indices: 47088993--47089026 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
47088983 GTTCAAAAAA
47088993 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
47089027 AAGAAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:47089002 original size:12 final size:12
Alignment explanation
Indices: 47088985--47089033 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
47088975 GGGTTCAGGT
47088985 TCAAAAAAAAAA
1 TCAAAAAAAAAA
**
47088997 TCAAAATCAAAA
1 TCAAAAAAAAAA
**
47089009 TCAAAATCAAAA
1 TCAAAAAAAAAA
47089021 TCAAAAAAGAAAA
1 TCAAAAAA-AAAA
47089034 GAAAAAAGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 28 0.88
13 4 0.12
ACGTcount: A:0.73, C:0.12, G:0.02, T:0.12
Consensus pattern (12 bp):
TCAAAAAAAAAA
Found at i:47089008 original size:18 final size:18
Alignment explanation
Indices: 47088985--47089033 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
47088975 GGGTTCAGGT
47088985 TCAAAAAAAAAATCAAAA
1 TCAAAAAAAAAATCAAAA
**
47089003 TCAAAATCAAAATCAAAA
1 TCAAAAAAAAAATCAAAA
47089021 TCAAAAAAGAAAA
1 TCAAAAAA-AAAA
47089034 GAAAAAAGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.73, C:0.12, G:0.02, T:0.12
Consensus pattern (18 bp):
TCAAAAAAAAAATCAAAA
Found at i:47089046 original size:19 final size:20
Alignment explanation
Indices: 47089025--47089061 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
47089015 TCAAAATCAA
47089025 AAAAG-AAAAG-AAAAAAGC
1 AAAAGCAAAAGCAAAAAAGC
47089043 AAAAGCAAAAGCAAAAAAG
1 AAAAGCAAAAGCAAAAAAG
47089062 AGAAATCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 5 0.29
20 7 0.41
ACGTcount: A:0.76, C:0.08, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAAGCAAAAGCAAAAAAGC
Found at i:47089479 original size:21 final size:21
Alignment explanation
Indices: 47089464--47089502 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
47089454 AAAAAGATGG
47089464 AAAATGAAAATGAAAAATGAA
1 AAAATGAAAATGAAAAATGAA
*
47089485 AAAATGAAAA-GTAAAATG
1 AAAATGAAAATGAAAAATG
47089503 GAGAGGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (21 bp):
AAAATGAAAATGAAAAATGAA
Found at i:47090877 original size:87 final size:87
Alignment explanation
Indices: 47090698--47090965 Score: 378
Period size: 87 Copynumber: 3.1 Consensus size: 87
47090688 AGAATAGATC
*
47090698 AGCAGATC-GAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-AGCAGATC
1 AGCAGATCAG-AAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATC
* *
47090761 TTGCCTTCCTGCATTGACAGCGA
65 TTGCCTTTCTGCGTTGACAGCGA
* * *
47090784 AGCAGATCAGAAACAAAGCCTTGCCTTCATCAGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCT
1 AGCAGATCAGAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCT
*
47090849 TGCCTTTCTGCGTTAACAGCGA
66 TGCCTTTCTGCGTTGACAGCGA
* * * *
47090871 AGCAGATCAAAAACAAAGCTTTGCCTCCATCGGTTGTGGTGGAGCTGGTTAAAGGTAGCAGATCT
1 AGCAGATCAGAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCT
* * * *
47090936 TACCCTTCTGCGTCGACAGTGA
66 TGCCTTTCTGCGTTGACAGCGA
47090958 AGCAGATC
1 AGCAGATC
47090966 GAAGATTACA
Statistics
Matches: 161, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
86 49 0.30
87 112 0.70
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (87 bp):
AGCAGATCAGAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCT
TGCCTTTCTGCGTTGACAGCGA
Found at i:47091579 original size:141 final size:140
Alignment explanation
Indices: 47091325--47091730 Score: 616
Period size: 141 Copynumber: 2.9 Consensus size: 140
47091315 ATCAGGTCTA
* *
47091325 ATCTCCCTGAGATTACAGCGACGTAGATTGAAGCTAGTAATCCTATCTGCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAGAGA-GTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
*
47091390 AGCGGATT-AAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATTAGATTGAA
65 AGCGGATTAAAATAAAGGATC-TATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAA
47091454 GACAGAAATCTT
129 GACAGAAATCTT
* * *
47091466 ATCTCCTTGAAATTACAGTAGAGTAGATCGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAG-AGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
47091531 AGCGGATTAAAATAAAGGATCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAG
65 AGCGGATTAAAATAAAGGATCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAG
*
47091596 CCAGAAATCTT
130 ACAGAAATCTT
* * * *
47091607 ATCTCCCTGAGATTACGGCGGAGCAGATTGAAGCTAGCAATCCTATCTCCCTGAGATTACAGTGG
1 ATCTCCCTGAGATTACAG-AGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGG
* * * * *
47091672 AGCGGATTAAAATAAAGGATATTATCTCTTTGGAGTTACAGTAGAGTATATCACATCAG
65 AGCGGATTAAAATAAAGGAT-CTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
47091731 GTCTTATCTC
Statistics
Matches: 242, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
141 195 0.81
142 47 0.19
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (140 bp):
ATCTCCCTGAGATTACAGAGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGA
GCGGATTAAAATAAAGGATCTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGA
CAGAAATCTT
Found at i:47091674 original size:44 final size:44
Alignment explanation
Indices: 47091586--47091679 Score: 134
Period size: 44 Copynumber: 2.1 Consensus size: 44
47091576 TAGATCGCAT
* *
47091586 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACGGCGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
* * *
47091630 CAGATTGAAGCTAGCAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
*
47091674 CGGATT
1 CAGATT
47091680 AAAATAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
Found at i:47094874 original size:85 final size:85
Alignment explanation
Indices: 47094731--47094901 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
47094721 AAAATGGTTT
47094731 CGACAAATGAAACTTAAACAAATGAAATAGAATAACTAAAATAACAAATAAAGGATTAAATTGAA
1 CGACAAATGAAACTTAAACAAATGAAATAGAATAACTAAAATAACAAATAAAGGATTAAATTGAA
47094796 ACTTAAACAAAATTTGAAGG
66 ACTTAAACAAAATTTGAAGG
47094816 CGACAAATGAAACTTAAACAAATGAAATAGAATAACTAAAATAACAAATAAAGGATTAAATTGAA
1 CGACAAATGAAACTTAAACAAATGAAATAGAATAACTAAAATAACAAATAAAGGATTAAATTGAA
47094881 ACTTAAACAAAATTTGAAGG
66 ACTTAAACAAAATTTGAAGG
47094901 C
1 C
47094902 CAAAATCAAA
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.57, C:0.10, G:0.12, T:0.21
Consensus pattern (85 bp):
CGACAAATGAAACTTAAACAAATGAAATAGAATAACTAAAATAACAAATAAAGGATTAAATTGAA
ACTTAAACAAAATTTGAAGG
Found at i:47099036 original size:27 final size:27
Alignment explanation
Indices: 47098987--47099058 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
47098977 GTAGCCTCCT
* *
47098987 TCCAATCCACTGCGTCTTGTTGCTTCGA
1 TCCACTCCACTGC-ACTTGTTGCTTCGA
*
47099015 TCCTCTCCACTGCACTTGTTGCTTCGA
1 TCCACTCCACTGCACTTGTTGCTTCGA
*
47099042 TCCACTCCACTCCACTT
1 TCCACTCCACTGCACTT
47099059 CAGGGGGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 28 0.72
28 11 0.28
ACGTcount: A:0.14, C:0.39, G:0.12, T:0.35
Consensus pattern (27 bp):
TCCACTCCACTGCACTTGTTGCTTCGA
Found at i:47099297 original size:44 final size:44
Alignment explanation
Indices: 47099247--47099541 Score: 132
Period size: 44 Copynumber: 6.6 Consensus size: 44
47099237 AATTCGACCT
* * * * * *
47099247 ACTGCAACTTCAGAGG-TATAGGATTCATCGTTTTAATCTGCTCC
1 ACTGCAACTTCAG-GGAGATAGGATTAATAGCTTCAATCTGATCC
*
47099291 ACTGCAACTTTAGGGAGATAGGATTAATAGCTTCAATCTGATCC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGATCC
* * * ** * * * *
47099335 ACTGCAGCTTTAGGGAGATAAGATTGGTATCCTCAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGATCC
* ** * * * * * *
47099379 ACTACAACTTCAAAGAGATAAGACTTGTTATGGTAGATTTAATC-CAACC
1 ACTGCAACTTCAGGGAGATAGGA----TTA--ATAGCTTCAATCTGATCC
* * * * *
47099428 TACTGCAACTTCAGAGG-TATAGGATTCATCA-TTTTAATC-CACTCC
1 -ACTGCAACTTCAG-GGAGATAGGATTAAT-AGCTTCAATCTGA-TCC
* * *
47099473 ACTACAACTTCAGGGAGATAGGATTAATAGCTTCAATTTGCTCC
1 ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGATCC
* * *
47099517 ACTACACCTTCAGGGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAGGATT
47099542 GGTATGGTGT
Statistics
Matches: 189, Mismatches: 48, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
43 5 0.03
44 151 0.80
45 3 0.02
46 2 0.01
48 2 0.01
49 2 0.01
50 23 0.12
51 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAGGATTAATAGCTTCAATCTGATCC
Found at i:47099498 original size:182 final size:182
Alignment explanation
Indices: 47099191--47099546 Score: 559
Period size: 182 Copynumber: 2.0 Consensus size: 182
47099181 ATCTACAGTT
* * ** * *
47099191 TGCTCCACTACGACTTTAGGGAGATAAGACTCGTTATGGTAGATTTAATTCGACCTACTGCAACT
1 TGCTCCACTACAACTTCAAAGAGATAAGACTCGTTATGGTAGATTTAATCCAACCTACTGCAACT
* ** * *
47099256 TCAGAGGTATAGGATTCATCGTTTTAATCTGCTCCACTGCAACTTTAGGGAGATAGGATTAATAG
66 TCAGAGGTATAGGATTCATCATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAATAG
* * *
47099321 CTTCAATCTGATCCACTGCAGCTTTAGGGAGATAAGATTGGTATCCTCAACC
131 CTTCAATCTGATCCACTACACCTTCAGGGAGATAAGATTGGTATCCTCAACC
*
47099373 TGCTCCACTACAACTTCAAAGAGATAAGACTTGTTATGGTAGATTTAATCCAACCTACTGCAACT
1 TGCTCCACTACAACTTCAAAGAGATAAGACTCGTTATGGTAGATTTAATCCAACCTACTGCAACT
47099438 TCAGAGGTATAGGATTCATCATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAATAG
66 TCAGAGGTATAGGATTCATCATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAATAG
* *
47099503 CTTCAATTTGCTCCACTACACCTTCAGGGAGATAAGATTGGTAT
131 CTTCAATCTGATCCACTACACCTTCAGGGAGATAAGATTGGTAT
47099547 GGTGTGATCT
Statistics
Matches: 157, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
182 157 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (182 bp):
TGCTCCACTACAACTTCAAAGAGATAAGACTCGTTATGGTAGATTTAATCCAACCTACTGCAACT
TCAGAGGTATAGGATTCATCATTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTAATAG
CTTCAATCTGATCCACTACACCTTCAGGGAGATAAGATTGGTATCCTCAACC
Found at i:47099731 original size:44 final size:45
Alignment explanation
Indices: 47099682--47099791 Score: 125
Period size: 44 Copynumber: 2.5 Consensus size: 45
47099672 TCTGCTCTAT
* * * * *
47099682 TGCAACTTCAGAGAGATAAGATCCA-TCATTTTAATCCGCTTCAC
1 TGCAACTTCAGGGAGATAAGATCCAGTAACTTCAATCCGCTCCAC
* * * *
47099726 TGCAACTTTAGGGAGATAGGA-CTAGTAACTTCAATCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATCCAGTAACTTCAATCCGCTCCAC
47099770 TGCAACTTCAGGGAGATAAGAT
1 TGCAACTTCAGGGAGATAAGAT
47099792 TGGTTTTAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
43 2 0.04
44 51 0.96
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (45 bp):
TGCAACTTCAGGGAGATAAGATCCAGTAACTTCAATCCGCTCCAC
Found at i:47099863 original size:45 final size:45
Alignment explanation
Indices: 47099714--47099880 Score: 160
Period size: 45 Copynumber: 3.7 Consensus size: 45
47099704 CCATCATTTT
* * * * *
47099714 AATCCGCTTCACTGCAACTTTAGGGAGATAGGACTAG-TAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTC
* *
47099758 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTTTTA-GTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TTAACTTC
* * * ** *
47099803 AGTCTGCTCCTCTGCAACTTTAGGGAGATAAGACTTGTTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTC
* *
47099848 AATCTGATTCACTGCAACTTCAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
47099881 TTTTCCATCT
Statistics
Matches: 99, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 32 0.32
45 62 0.63
46 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTC
Found at i:47100189 original size:122 final size:122
Alignment explanation
Indices: 47099968--47100277 Score: 451
Period size: 122 Copynumber: 2.5 Consensus size: 122
47099958 GATTCGTTGC
* * * * *
47099968 CTTCAGCTTTAATCTACTCCGCTGCAATGTTAGGAAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * * * *
47100033 TGTTTCACTGTAACACCAAGGAGATAGCATTCGCTTCCTTTGGCTTTAATCCGTATG-
66 TGTTCCACCGTAACACCAAGGAGATAGCATTCGCTGCCTTTAGCTTTAATCCG-ACGA
* * *
47100090 TTTTAGCTTTAATCTATTCCACTACAATGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
* * *
47100155 TGTTCCACCGTAACTCCAAGGAGATAGGATTCGCTGCCTTTAGCTTTAATCCGCCGCA
66 TGTTCCACCGTAACACCAAGGAGATAGCATTCGCTGCCTTTAGCTTTAATCCGACG-A
47100213 CTTCAGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
1 CTTCAGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
47100278 CGTCGCAGTT
Statistics
Matches: 167, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
121 1 0.01
122 104 0.62
123 62 0.37
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (122 bp):
CTTCAGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATC
TGTTCCACCGTAACACCAAGGAGATAGCATTCGCTGCCTTTAGCTTTAATCCGACGA
Found at i:47100267 original size:72 final size:72
Alignment explanation
Indices: 47100182--47100349 Score: 264
Period size: 72 Copynumber: 2.3 Consensus size: 72
47100172 AAGGAGATAG
* * *
47100182 GATTCGCTGCCTTTAGCTTTAATCCGCCGCACTTCAGCTTTAATCTATTCCACTACAATGCTAGG
1 GATTCGCTACCTTTAGCTTTAATCCGCCGCACTTCAGCTTTAATCTATTCCACTACAACGCCAGG
47100247 GAAACAA
66 GAAACAA
* * * * *
47100254 GATTCGCTACCTTTAGCTTTAATCCGTCGCAGTTCAGCTTTAATCTATTTCATTGCAACGCCAGG
1 GATTCGCTACCTTTAGCTTTAATCCGCCGCACTTCAGCTTTAATCTATTCCACTACAACGCCAGG
47100319 GAAACAA
66 GAAACAA
47100326 GATTCGCTACCTTTAGCTTTAATC
1 GATTCGCTACCTTTAGCTTTAATC
47100350 TGTTCCATTG
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 88 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (72 bp):
GATTCGCTACCTTTAGCTTTAATCCGCCGCACTTCAGCTTTAATCTATTCCACTACAACGCCAGG
GAAACAA
Found at i:47100365 original size:51 final size:51
Alignment explanation
Indices: 47100289--47100389 Score: 166
Period size: 51 Copynumber: 2.0 Consensus size: 51
47100279 GTCGCAGTTC
* *
47100289 AGCTTTAATCTATTTCATTGCAACGCCAGGGAAACAAGATTCGCTACCTTT
1 AGCTTTAATCTATTCCATTGCAACGCCAGGGAAACAAAATTCGCTACCTTT
* *
47100340 AGCTTTAATCTGTTCCATTGCAACGCCAGGGAAATAAAATTCGCTACCTT
1 AGCTTTAATCTATTCCATTGCAACGCCAGGGAAACAAAATTCGCTACCTT
47100390 CGGTCTTAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (51 bp):
AGCTTTAATCTATTCCATTGCAACGCCAGGGAAACAAAATTCGCTACCTTT
Found at i:47100460 original size:87 final size:87
Alignment explanation
Indices: 47100310--47100476 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 87
47100300 ATTTCATTGC
* * * * * * *
47100310 AACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCATTGCAACGCCAGGGAAAT
1 AACGCCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTGCTCCACTACAACACCAAGGAAAC
*
47100375 AAAATTCGCTACCTTCGGTCTT
66 AAAATTCCCTACCTTCGGTCTT
* * ** * *
47100397 AACGCCAGGGAGATAAGATTCGCTACCTTCAGCTTTAATCTGCTCTGCTACTATACCAAGGAAAC
1 AACGCCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTGCTCCACTACAACACCAAGGAAAC
*
47100462 AAGATTCCCTACCTT
66 AAAATTCCCTACCTT
47100477 TAGCTTTAAT
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (87 bp):
AACGCCAGGGAAACAAGATTCGCTACCTTCAGCTTTAATCTGCTCCACTACAACACCAAGGAAAC
AAAATTCCCTACCTTCGGTCTT
Found at i:47100474 original size:138 final size:136
Alignment explanation
Indices: 47100318--47100753 Score: 434
Period size: 138 Copynumber: 3.3 Consensus size: 136
47100308 GCAACGCCAG
* *
47100318 GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCATTGCAACGCCAGGGAAATAAAATTCG
1 GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCG
* * * **
47100383 CTACCTTCGGTCTTAACGCCAGGGAGATAAGATTCGCTACCTTCAGCTTTAATCTGCTCTGCTAC
66 CTGCCTTCAGTCTTAAC-CCAGGGAGATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACT-C
47100448 TATACCAA
129 TATACCAA
* * * * * *
47100456 GGAAACAAGATTCCCTACCTTTAGCTTTAATCTGTTCCACTGTAACTCCAAGGAGATAGGATTCG
1 GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCG
* * * * *
47100521 CTGCCTTCAG-CTT------------T-A-ATCCGCTCCACTTTAGCTTTAATCTATTCCACTGT
66 CTGCCTTCAGTCTTAACCCAGGGAGATAAGATTCGCTAC-CTTCAGCTTTAATCTACTCCACTCT
*
47100571 AATGCCAA
130 -ATACCAA
* * *
47100579 GGAAATAAGATTCTCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAGGGAAATAAGATTCG
1 GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCG
** * * *
47100644 CTGTTTTCAGTTTTAACACCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCATTGC
66 CTGCCTTCAGTCTTAAC-CCAGGGAGATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACT-C
* *
47100709 AACACCAA
129 TATACCAA
* *
47100717 TGAAACAAGATTCGCTACCTTAAGCTTTAATCTGTTC
1 GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTC
47100754 TACTATAATG
Statistics
Matches: 236, Mismatches: 43, Indels: 38
0.74 0.14 0.12
Matches are distributed among these distances:
122 8 0.03
123 90 0.38
124 3 0.01
137 4 0.02
138 124 0.53
139 7 0.03
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (136 bp):
GGAAACAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCG
CTGCCTTCAGTCTTAACCCAGGGAGATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACTCTA
TACCAA
Found at i:47100591 original size:72 final size:72
Alignment explanation
Indices: 47100474--47100619 Score: 204
Period size: 72 Copynumber: 2.0 Consensus size: 72
47100464 GATTCCCTAC
* * * *
47100474 CTTTAGCTTTAATCTGTTCCACTGTAACTCCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATC
1 CTTTAGCTTTAATCTATTCCACTGTAACTCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATC
47100539 CGCTCCA
66 CGCTCCA
* *
47100546 CTTTAGCTTTAATCTATTCCACTGTAA-TGCCAAGGAAATAAGATTCTCTACCTTTAGCTTTAAT
1 CTTTAGCTTTAATCTATTCCACTGTAACT-CCAAGGAAATAAGATTCGCTACCTTCAGCTTTAAT
* *
47100610 CTGTTCCA
65 CCGCTCCA
47100618 CT
1 CT
47100620 GCAAAGCCAG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
71 1 0.02
72 64 0.98
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (72 bp):
CTTTAGCTTTAATCTATTCCACTGTAACTCCAAGGAAATAAGATTCGCTACCTTCAGCTTTAATC
CGCTCCA
Found at i:47100634 original size:51 final size:51
Alignment explanation
Indices: 47100546--47100642 Score: 158
Period size: 51 Copynumber: 1.9 Consensus size: 51
47100536 ATCCGCTCCA
* *
47100546 CTTTAGCTTTAATCTATTCCACTGTAATGCCAAGGAAATAAGATTCTCTAC
1 CTTTAGCTTTAATCTATTCCACTGCAAAGCCAAGGAAATAAGATTCTCTAC
* *
47100597 CTTTAGCTTTAATCTGTTCCACTGCAAAGCCAGGGAAATAAGATTC
1 CTTTAGCTTTAATCTATTCCACTGCAAAGCCAAGGAAATAAGATTC
47100643 GCTGTTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (51 bp):
CTTTAGCTTTAATCTATTCCACTGCAAAGCCAAGGAAATAAGATTCTCTAC
Found at i:47100681 original size:261 final size:261
Alignment explanation
Indices: 47100217--47100789 Score: 727
Period size: 261 Copynumber: 2.2 Consensus size: 261
47100207 GCCGCACTTC
* * * * * * * *
47100217 AGCTTTAATCTATTCCACTACAATGCTAGGGAAACAAGATTCGCTACCTTTAGCTTTAATCCGTC
1 AGCTTTAATCTGTTCCACTATAATGCCAAGGAGATAGGATTCGCTACCTTCAGCTTTAATCCGTC
* * * *
47100282 GCAGTTCAGCTTTAATCTATTTCATTGCAACGCCAGGGAAACAAGATTCGCTACCTTTAGCTTTA
66 GCACTTCAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTA
* * * *
47100347 ATCTGTTCCATTGCAACGCCAGGGAAATAAAATTCGCTACCTTCGGTCTTAACGCCAGGGAGATA
131 ATCTGTTCCACTGCAAAGCCAGGGAAATAAAATTCGCTACCTTCAGTCTTAACACCAGGGAGATA
* ** * *
47100412 AGATTCGCTACCTTCAGCTTTAATCTGCTCTGCTACTATACCAAGGAAACAAGATTCCCTACCTT
196 AGATTCGCTACCTTCAGCTTTAATCTACTCCACTACAACACCAAGGAAACAAGATTCCCTACCTT
*
47100477 T
261 A
* *
47100478 AGCTTTAATCTGTTCCACTGTAACT-CCAAGGAGATAGGATTCGCTGCCTTCAGCTTTAATCCGC
1 AGCTTTAATCTGTTCCACTATAA-TGCCAAGGAGATAGGATTCGCTACCTTCAGCTTTAATCCG-
* * * * *
47100542 TC-CACTTTAGCTTTAATCTATTCCACTGTAATGCCAAGGAAATAAGATTCTCTACCTTTAGCTT
64 TCGCACTTCAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTT
* *** *
47100606 TAATCTGTTCCACTGCAAAGCCAGGGAAATAAGATTCGCTGTTTTCAGTTTTAACACCAGGGAGA
129 TAATCTGTTCCACTGCAAAGCCAGGGAAATAAAATTCGCTACCTTCAGTCTTAACACCAGGGAGA
* * * * *
47100671 TAAGATTCGCTGCCTTCAGCTTTAATCTACTCCATTGCAACACCAATGAAACAAGATTCGCTACC
194 TAAGATTCGCTACCTTCAGCTTTAATCTACTCCACTACAACACCAAGGAAACAAGATTCCCTACC
47100736 TTA
259 TTA
* * * *
47100739 AGCTTTAATCTGTTCTACTATAATGCCTAGGAGATAGGATTTGCTATCTTC
1 AGCTTTAATCTGTTCCACTATAATGCCAAGGAGATAGGATTCGCTACCTTC
47100790 GATCTGCTCC
Statistics
Matches: 264, Mismatches: 45, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
260 1 0.00
261 260 0.98
262 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (261 bp):
AGCTTTAATCTGTTCCACTATAATGCCAAGGAGATAGGATTCGCTACCTTCAGCTTTAATCCGTC
GCACTTCAGCTTTAATCTATTCCACTGCAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTA
ATCTGTTCCACTGCAAAGCCAGGGAAATAAAATTCGCTACCTTCAGTCTTAACACCAGGGAGATA
AGATTCGCTACCTTCAGCTTTAATCTACTCCACTACAACACCAAGGAAACAAGATTCCCTACCTT
A
Found at i:47100689 original size:36 final size:36
Alignment explanation
Indices: 47100626--47100695 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
47100616 CACTGCAAAG
** *
47100626 CCAGGGAAATAAGATTCGCTGTTTTCAGTTTTAACA
1 CCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAACA
*
47100662 CCAGGGAGATAAGATTCGCTGCCTTCAGCTTTAA
1 CCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAA
47100696 TCTACTCCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (36 bp):
CCAGGGAAATAAGATTCGCTGCCTTCAGCTTTAACA
Found at i:47100746 original size:87 final size:87
Alignment explanation
Indices: 47100583--47100746 Score: 186
Period size: 87 Copynumber: 1.9 Consensus size: 87
47100573 TGCCAAGGAA
* * ** * * **
47100583 ATAAGATTCTCTACCTTTAGCTTTAATCTGTTCCACTGCAAAGCCAGGGAAATAAGATTCGCTGT
1 ATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAAAGCCAAGGAAACAAGATTCGCTAC
* * *
47100648 TTTCAGTTTTAACACCAGGGAG
66 CTTAAGCTTTAACACCAGGGAG
* * *
47100670 ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCATTGCAACA-CCAATGAAACAAGATTCGCTA
1 ATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAA-AGCCAAGGAAACAAGATTCGCTA
47100734 CCTTAAGCTTTAA
65 CCTTAAGCTTTAA
47100747 TCTGTTCTAC
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
87 61 0.98
88 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (87 bp):
ATAAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAAAGCCAAGGAAACAAGATTCGCTAC
CTTAAGCTTTAACACCAGGGAG
Found at i:47100982 original size:132 final size:132
Alignment explanation
Indices: 47100784--47101261 Score: 690
Period size: 132 Copynumber: 3.6 Consensus size: 132
47100774 AGGATTTGCT
* * **
47100784 ATCTTCGATCTGCTCCACTACTGTTTAGGGAGACAGGATCTACAATCTTTGACCTACTCCACTGC
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
* *
47100849 TGCTCCGGGAGATAGGACTAGTGGCTTAAATCTGCTTTCCTACTACCTTGGGAAGATAAGATTCA
66 TGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTTCCTACTACCTTGGGAAGATAAGATTCA
47100914 CC
131 CC
* * * *
47100916 GTCTTTGATCTGCTTCACTACTGCTTAGGGAGGCAGGATCTACAATCTTCAAGCTACTCCACTGC
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
* * *
47100981 TGCTCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACATTGGGAAGATCAA-ATTC
66 TGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTTCCTACTACCTTGGGAAGAT-AAGATTC
47101045 ACC
130 ACC
* *
47101048 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATGTACAATCTTTAACCTACTCCACTGC
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
*
47101113 TGCTCAGGTAGATAGGACTGGTGGCTTAAATCTGC-TTCTCTACTACCTTGGGAAGATAAGATTC
66 TGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTTC-CTACTACCTTGGGAAGATAAGATTC
*
47101177 CCC
130 ACC
* * * * * ** *
47101180 TTTTTTTATCTTCTCCACTACTGCTTAGGGAGACAGGATCTATAATCTTCAACCTACTTTACTGT
1 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
*
47101245 TTCTCAGGGAGATAGGA
66 TGCTCAGGGAGATAGGA
47101262 TTTACAATCT
Statistics
Matches: 307, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
131 4 0.01
132 301 0.98
133 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
ATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
TGCTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTTCCTACTACCTTGGGAAGATAAGATTCA
CC
Found at i:47101295 original size:44 final size:44
Alignment explanation
Indices: 47101192--47101296 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
47101182 TTTTTATCTT
* *
47101192 CTCCACT-ACTGCTTAGGGAGACAGGATCTATAATCTTCAACCTA
1 CTCCACTGA-TGCTCAGGGAGACAGGATCTACAATCTTCAACCTA
** * * * *
47101236 CTTTACTGTTTCTCAGGGAGATAGGATTTACAATCTTCAACCTA
1 CTCCACTGATGCTCAGGGAGACAGGATCTACAATCTTCAACCTA
47101280 CTCCACTGATGCTCAGG
1 CTCCACTGATGCTCAGG
47101297 AGAGCGAATG
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
CTCCACTGATGCTCAGGGAGACAGGATCTACAATCTTCAACCTA
Found at i:47105286 original size:88 final size:88
Alignment explanation
Indices: 47105125--47105791 Score: 699
Period size: 88 Copynumber: 7.6 Consensus size: 88
47105115 TTCTATGTGC
* *
47105125 TTTCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
47105190 GCTCAGGGAGATAAGGCTGGTGT
66 GCTCAGGGAGATAAGGCTGGTGT
* * * * * * * * *
47105213 TTTTGATTTGCTTCATTGCCAGTACAAGAAGACAAGATCTACAATATTCAACATACTCCATTGCT
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
*
47105278 GCTTAGGGAGATAAGGCTGGTGT
66 GCTCAGGGAGATAAGGCTGGTGT
* ** * *
47105301 TTTTGATCTACTTCGTTGCCAATACAGGAAGACAAGATCTACAATCTTTAACCTACTCCACTACT
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
47105366 GCTCAGGGAGATAAGGCTGGTGT
66 GCTCAGGGAGATAAGGCTGGTGT
* * * ** *
47105389 TTTCGATCTACTTCACTGCCAATACAAGAAGACAAGATCTGCTA-CTTTCAGTCTACTCCGCTGG
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATC-TTCAACCTACTCCACT-G
*** * ** *
47105453 AAACTGAGGGAGGCAAGGCTAGTGT
64 CTGCTCAGGGAGATAAGGCTGGTGT
* ** * * * ** *
47105478 CTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGATTTGCTA-CTTTCAGTCTGCTCCACTGC
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATC-TTCAACCTACTCCACTGC
** **
47105542 AAACTCAGGGAGGCAAGGCTGGTGT
65 -TGCTCAGGGAGATAAGGCTGGTGT
* ** * *
47105567 CTTCGATCTACTTCGTTGCCAATACTGGAAGACAAGATCTGCAATCTTCAACCTACTCCACTGCT
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
* * * *
47105632 ACTCAGGTAGATAAGGCTAGAGT
66 GCTCAGGGAGATAAGGCTGGTGT
* * * * * * *
47105655 TTTCGATCTGCTTCACTGCTAGTACAGGAAGAAAAGATCTACATTCTTTAACTTACTCCACTGCT
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
* *
47105720 GCTCTGGGAGATAAGGCTAGTGT
66 GCTCAGGGAGATAAGGCTGGTGT
* * * *
47105743 TTTCGATCTACTTCACTGCTAGTATAGGAAGACAAGATCTACAACCTTC
1 TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTC
47105792 TTCAATCCAT
Statistics
Matches: 492, Mismatches: 83, Indels: 8
0.84 0.14 0.01
Matches are distributed among these distances:
87 1 0.00
88 341 0.69
89 149 0.30
90 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (88 bp):
TTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTACAATCTTCAACCTACTCCACTGCT
GCTCAGGGAGATAAGGCTGGTGT
Found at i:47114143 original size:16 final size:14
Alignment explanation
Indices: 47114110--47114146 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
47114100 GGCACACGAC
*
47114110 TGTGTGGCAGACCA
1 TGTGTGCCAGACCA
47114124 TGTGTGCCAGACCA
1 TGTGTGCCAGACCA
47114138 TGTGTGCCA
1 TGTGTGCCA
47114147 AAAATGCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (14 bp):
TGTGTGCCAGACCA
Found at i:47121193 original size:11 final size:11
Alignment explanation
Indices: 47121177--47121202 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47121167 CAATAAAAAT
47121177 TAAATCTATTC
1 TAAATCTATTC
47121188 TAAATCTATTC
1 TAAATCTATTC
47121199 TAAA
1 TAAA
47121203 AAGGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (11 bp):
TAAATCTATTC
Found at i:47121672 original size:14 final size:15
Alignment explanation
Indices: 47121653--47121683 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47121643 TGATTTTTAT
47121653 AAATAA-ATAACTAA
1 AAATAACATAACTAA
47121667 AAATAACATAACTAA
1 AAATAACATAACTAA
47121682 AA
1 AA
47121684 GGAGTCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATAACATAACTAA
Found at i:47126885 original size:19 final size:18
Alignment explanation
Indices: 47126858--47126894 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
47126848 TTTTAGTAAT
47126858 GCTTAAAAAAACACTTTTG
1 GCTT-AAAAAACACTTTTG
*
47126877 GCTTGAAAAACACTTTTG
1 GCTTAAAAAACACTTTTG
47126895 AAAGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (18 bp):
GCTTAAAAAACACTTTTG
Found at i:47127219 original size:18 final size:19
Alignment explanation
Indices: 47127182--47127219 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47127172 TTCAAATTAA
* *
47127182 AATTTAAAATAAAATCATT
1 AATTAAAAATAAAATAATT
47127201 AATTAAAAATAAAA-AATT
1 AATTAAAAATAAAATAATT
47127219 A
1 A
47127220 GTTCTTAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AATTAAAAATAAAATAATT
Found at i:47130800 original size:57 final size:57
Alignment explanation
Indices: 47130711--47130826 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
47130701 ATTTTTAGGC
* *
47130711 CATTTTCATTTTGGAGAAAACCACATTGATTTCCAAATGACTCCATTTCTCCATTTT
1 CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGACTCCATTTCTCCATTTT
* * * *
47130768 CATTTTCATTTTGGAGAAAACTATAATCATTTCCAAATGATTCCATTTCTCTATTTT
1 CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGACTCCATTTCTCCATTTT
47130825 CA
1 CA
47130827 CCATTTCTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (57 bp):
CATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGACTCCATTTCTCCATTTT
Found at i:47135852 original size:7 final size:7
Alignment explanation
Indices: 47135840--47135870 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
47135830 GTGAGATAAA
47135840 TTTAGGG
1 TTTAGGG
47135847 TTTAGGG
1 TTTAGGG
47135854 TTTAGGG
1 TTTAGGG
47135861 TTTAGGG
1 TTTAGGG
47135868 TTT
1 TTT
47135871 TAAGTTTAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.00, G:0.39, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:47135877 original size:21 final size:21
Alignment explanation
Indices: 47135840--47135879 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
47135830 GTGAGATAAA
*
47135840 TTTAGGGTTTAGGGTTTAGGG
1 TTTAGGGTTTAGAGTTTAGGG
47135861 TTTAGGGTTTTA-AGTTTAG
1 TTTAGGG-TTTAGAGTTTAG
47135880 AAAATGAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.47
Consensus pattern (21 bp):
TTTAGGGTTTAGAGTTTAGGG
Found at i:47137966 original size:63 final size:64
Alignment explanation
Indices: 47137844--47137967 Score: 144
Period size: 63 Copynumber: 2.0 Consensus size: 64
47137834 AAAGAAATTG
* * * ** **
47137844 TGAAAATGGAGAATTGGGCAACATTAGGAAATGATTATGGTTTTGTTGAAAATGGAAATGAAAA
1 TGAAAATGGAGAAATGGGCAACATTAGGAAATGAATATGGTTTTCTCCAAAATAAAAATGAAAA
* *
47137908 TGAAAATGGAGAAAT-GG-AATCATTTGGAAATGAATGTGGTTTTCTCCAAAATAAAAATGA
1 TGAAAATGGAGAAATGGGCAA-CATTAGGAAATGAATATGGTTTTCTCCAAAATAAAAATGA
47137968 CTTGAAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
62 2 0.04
63 34 0.68
64 14 0.28
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.28
Consensus pattern (64 bp):
TGAAAATGGAGAAATGGGCAACATTAGGAAATGAATATGGTTTTCTCCAAAATAAAAATGAAAA
Found at i:47143547 original size:50 final size:50
Alignment explanation
Indices: 47143430--47143721 Score: 236
Period size: 50 Copynumber: 5.7 Consensus size: 50
47143420 GAATATAACA
* * * ** * *
47143430 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTACT--TGTAC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTT-CTCATCTAG
* * * *
47143479 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTCATCTA-G
* **
47143529 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACC-TCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTCATCT-AG
* *
47143579 TGCCAACT-CCATATCCCAGACATGGTCTTACATGGGACCTT-TCATCTTGG
1 TGCCAA-TGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTCATC-TAG
* * * *
47143629 TGCCAACGCCATGTCCTAGACATGGTCTTACATGAGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-TC-TCATCT--A-G
* * *
47143684 ATGCAAATGTCATGTCCCAAACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
47143722 TCTTATCCTC
Statistics
Matches: 196, Mismatches: 31, Indels: 25
0.78 0.12 0.10
Matches are distributed among these distances:
47 2 0.01
48 3 0.02
49 35 0.18
50 114 0.58
51 5 0.03
52 1 0.01
53 4 0.02
55 1 0.01
56 31 0.16
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTCTCATCTAG
Found at i:47143595 original size:100 final size:100
Alignment explanation
Indices: 47143479--47143721 Score: 274
Period size: 100 Copynumber: 2.4 Consensus size: 100
47143469 TTACTTGTAC
* * * *
47143479 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGA-GTTCTCATATAGGTGCCCATGCCATGT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTT-TCATATAGGTGCCAACGCCATGT
* *
47143543 CCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
65 CCCAGACATGGTCTTACAGGAGACCTCTCATCTCAG
* *
47143579 TGCCAACT-CCATATCCCAGACATGGTCTTACATGGGACCTTTCATCTTGGTGCCAACGCCATGT
1 TGCCAA-TGCCATATCCCAGACATGGTCTTACATGGGACCTTTCATATAGGTGCCAACGCCATGT
* *
47143643 CCTAGACATGGTCTTACATGAGACCTCTCATAATCTCAATG
65 CCCAGACATGGTCTTACAGGAGACCTCTC---ATCTC-A-G
* * * *
47143684 ATGCAAATGTCATGTCCCAAACATGGTCTTACATGGGA
1 -TGCCAATGCCATATCCCAGACATGGTCTTACATGGGA
47143722 TCTTATCCTC
Statistics
Matches: 120, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
100 78 0.65
101 3 0.03
103 5 0.04
104 1 0.01
105 2 0.02
106 31 0.26
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (100 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTTTCATATAGGTGCCAACGCCATGTC
CCAGACATGGTCTTACAGGAGACCTCTCATCTCAG
Found at i:47154401 original size:27 final size:27
Alignment explanation
Indices: 47154277--47154454 Score: 117
Period size: 27 Copynumber: 6.6 Consensus size: 27
47154267 TTCAAATTCT
**
47154277 CCACAAAGGCTTTTATCTCTTA-GTTCG
1 CCACAAAGGCTTCCATCTCTTAGGTT-G
* * * * **
47154304 CAACAAGGGTTTACATCTCTTAAATTG
1 CCACAAAGGCTTCCATCTCTTAGGTTG
* * * * *
47154331 CCACAAAGGCTTTCTTCTTTTAGATCTC
1 CCACAAAGGCTTCCATCTCTTAGGT-TG
* * * **
47154359 CCA-AAAAGATTTCATCTCTTAGGTCA
1 CCACAAAGGCTTCCATCTCTTAGGTTG
**
47154385 CCACAAAGGCTTCCATCTCTTACATTG
1 CCACAAAGGCTTCCATCTCTTAGGTTG
* *
47154412 CCACAAAGGCTTCCATCACATAGGTTG
1 CCACAAAGGCTTCCATCTCTTAGGTTG
*
47154439 CCAGAAAGGCTTCCAT
1 CCACAAAGGCTTCCAT
47154455 TTTTTCTAGG
Statistics
Matches: 115, Mismatches: 33, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
26 3 0.03
27 106 0.92
28 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (27 bp):
CCACAAAGGCTTCCATCTCTTAGGTTG
Found at i:47156083 original size:22 final size:22
Alignment explanation
Indices: 47156055--47156134 Score: 101
Period size: 22 Copynumber: 3.6 Consensus size: 22
47156045 TACTCTAATC
47156055 TAGCCTTTATGGCACATTCTAT
1 TAGCCTTTATGGCACATTCTAT
* *
47156077 TAGCCTTTGTGG--CATTCTTTT
1 TAGCCTTTATGGCACATTC-TAT
47156098 ATAGCCTTTATGGCACATTCTAT
1 -TAGCCTTTATGGCACATTCTAT
*
47156121 TAGCCTTTGTGGCA
1 TAGCCTTTATGGCA
47156135 TACTGTATGG
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
20 5 0.10
21 2 0.04
22 35 0.71
23 2 0.04
24 5 0.10
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.42
Consensus pattern (22 bp):
TAGCCTTTATGGCACATTCTAT
Found at i:47158837 original size:65 final size:65
Alignment explanation
Indices: 47158733--47158864 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
47158723 TGACTCATGC
*
47158733 ACATATATTCAAAACCTTTCTAAAGCATACCATAACTTGACCATGTTGTGGTCAATCCATCACCT
1 ACATATATTCAAAACCTTTCCAAAGCATACCATAACTTGACCATGTTGTGGTCAATCCATCACCT
*
47158798 ACATATATTCAAAACCTTTCCAAAGCGTACCATAACTTGACCATGTTGTGGTCAATCCATCACCT
1 ACATATATTCAAAACCTTTCCAAAGCATACCATAACTTGACCATGTTGTGGTCAATCCATCACCT
47158863 AC
1 AC
47158865 CATTTTAGCT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (65 bp):
ACATATATTCAAAACCTTTCCAAAGCATACCATAACTTGACCATGTTGTGGTCAATCCATCACCT
Found at i:47159771 original size:50 final size:50
Alignment explanation
Indices: 47159700--47159807 Score: 173
Period size: 50 Copynumber: 2.2 Consensus size: 50
47159690 TCCATTTCAG
* *
47159700 TCCTTTTCATAATTTCATGACATAGTTCATTTGAATACATACCTTTCCTT
1 TCCTTTTCATAATTTCATGACATAGTTCATTTGAACACATACCTTTCATT
*
47159750 TCCCTTTT-ATGATTTCATGACATAGTTCATTTGAACACATACCTTTCATT
1 T-CCTTTTCATAATTTCATGACATAGTTCATTTGAACACATACCTTTCATT
47159800 TCCTTTTC
1 TCCTTTTC
47159808 CATGCTCGCT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
49 6 0.11
50 41 0.77
51 6 0.11
ACGTcount: A:0.24, C:0.23, G:0.06, T:0.46
Consensus pattern (50 bp):
TCCTTTTCATAATTTCATGACATAGTTCATTTGAACACATACCTTTCATT
Found at i:47163542 original size:81 final size:78
Alignment explanation
Indices: 47163426--47163723 Score: 254
Period size: 81 Copynumber: 3.8 Consensus size: 78
47163416 CACCACAGGT
* * *
47163426 TTTTCTTTCATGATTC-GCCATAAATGTTTTTCTTTCATGATTAGCCACAAAGG-TTGTTCTTTC
1 TTTTCTTTCAT-ATTCTGCCACAAA-GGTTTTCTTTCAT-ATTCGCCACAAAGGCTT-TTCTTTC
47163489 ATATTCCACCACAAAGGC
62 ATATTCC-CCACAAAGGC
*
47163507 TTTTCTTTCATATTCTGTCACAAAGGTTTTCCTTTCATATATCGCCACAAAGGCTTTTCTTTCAA
1 TTTTCTTTCATATTCTGCCACAAAGGTTTT-CTTTCATAT-TCGCCACAAAGGCTTTTCTTTC-A
* ****
47163572 GATTCGTTGCAAAGGC
63 TATTCCCCACAAAGGC
* * * * **
47163588 GTTTCTTTCATATTTTACCACAAATGATTTTCTTAAATATTTCGCCACAAAGGCTTTTCTTTCAT
1 TTTTCTTTCATATTCTGCCACAAA-GGTTTTCTTTCATA-TTCGCCACAAAGGCTTTTCTTTCAT
*
47163653 ATTTCCCCACAAAGTC
64 A-TTCCCCACAAAGGC
* * *
47163669 TTTCCTTTCATATTTTGCCA-TAA------CTTTCATGATTCGCCACAAAGGCTTTTCTTTC
1 TTTTCTTTCATATTCTGCCACAAAGGTTTTCTTTCAT-ATTCGCCACAAAGGCTTTTCTTTC
47163724 CTAACGTGTT
Statistics
Matches: 180, Mismatches: 28, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
73 28 0.16
74 1 0.01
80 15 0.08
81 123 0.68
82 13 0.07
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (78 bp):
TTTTCTTTCATATTCTGCCACAAAGGTTTTCTTTCATATTCGCCACAAAGGCTTTTCTTTCATAT
TCCCCACAAAGGC
Found at i:47163683 original size:27 final size:27
Alignment explanation
Indices: 47163426--47163688 Score: 223
Period size: 27 Copynumber: 9.7 Consensus size: 27
47163416 CACCACAGGT
* * *
47163426 TTTTCTTTCATGA-TTCGCCATAAATGT
1 TTTTCTTTCAT-ATTTCGCCACAAAGGC
*
47163453 TTTTCTTTCATGA-TTAGCCACAAAGG-
1 TTTTCTTTCAT-ATTTCGCCACAAAGGC
* *
47163479 TTGTTCTTTCATATTCCACCACAAAGGC
1 TT-TTCTTTCATATTTCGCCACAAAGGC
*
47163507 TTTTCTTTCATA-TTCTGTCACAAAGG-
1 TTTTCTTTCATATTTC-GCCACAAAGGC
*
47163533 TTTTCCTTTCATATATCGCCACAAAGGC
1 TTTT-CTTTCATATTTCGCCACAAAGGC
* ***
47163561 TTTTCTTTCA-AGATTCGTTGCAAAGGC
1 TTTTCTTTCATA-TTTCGCCACAAAGGC
* ** * *
47163588 GTTTCTTTCATATTTTACCACAAATGA
1 TTTTCTTTCATATTTCGCCACAAAGGC
**
47163615 TTTTCTTAAATATTTCGCCACAAAGGC
1 TTTTCTTTCATATTTCGCCACAAAGGC
* *
47163642 TTTTCTTTCATATTTCCCCACAAAGTC
1 TTTTCTTTCATATTTCGCCACAAAGGC
* *
47163669 TTTCCTTTCATATTTTGCCA
1 TTTTCTTTCATATTTCGCCA
47163689 TAACTTTCAT
Statistics
Matches: 188, Mismatches: 39, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
26 10 0.05
27 169 0.90
28 9 0.05
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (27 bp):
TTTTCTTTCATATTTCGCCACAAAGGC
Found at i:47175798 original size:21 final size:18
Alignment explanation
Indices: 47175774--47175814 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 18
47175764 CTTGAGATAT
47175774 TTAAACTTTGTTTTCAGTGTC
1 TTAAA-TTTGTTTT-AGT-TC
47175795 TTAAATTTGTTTTAGTTC
1 TTAAATTTGTTTTAGTTC
47175813 TT
1 TT
47175815 TTGGAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 3 0.15
20 8 0.40
21 5 0.25
ACGTcount: A:0.20, C:0.10, G:0.12, T:0.59
Consensus pattern (18 bp):
TTAAATTTGTTTTAGTTC
Found at i:47176509 original size:44 final size:44
Alignment explanation
Indices: 47176460--47176544 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
47176450 TCAACACGAA
47176460 TTAATAATTAATTCATTAGTTACCCTACAACGATAATGCAATAT
1 TTAATAATTAATTCATTAGTTACCCTACAACGATAATGCAATAT
* *
47176504 TTAATAATTAATTCATTAGTTACCTTACAATGATAATGCAA
1 TTAATAATTAATTCATTAGTTACCCTACAACGATAATGCAA
47176545 GATTAACTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (44 bp):
TTAATAATTAATTCATTAGTTACCCTACAACGATAATGCAATAT
Found at i:47180626 original size:16 final size:15
Alignment explanation
Indices: 47180601--47180634 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
47180591 AAAGTTGATA
*
47180601 ATAATTAATATATATT
1 ATAATAAATATA-ATT
47180617 ATAATAAATATAATT
1 ATAATAAATATAATT
47180632 ATA
1 ATA
47180635 TTTTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:47186251 original size:37 final size:37
Alignment explanation
Indices: 47186201--47186274 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
47186191 GTGCAAGTGT
47186201 ACACAATCGCAACACATAATAAAGTGACAAGAAAATG
1 ACACAATCGCAACACATAATAAAGTGACAAGAAAATG
47186238 ACACAATCGCAACACATAATAAAGTGACAAGAAAATG
1 ACACAATCGCAACACATAATAAAGTGACAAGAAAATG
47186275 TCGAGTTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.54, C:0.19, G:0.14, T:0.14
Consensus pattern (37 bp):
ACACAATCGCAACACATAATAAAGTGACAAGAAAATG
Found at i:47191554 original size:9 final size:9
Alignment explanation
Indices: 47191537--47191581 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
47191527 TCTAATCCAT
*
47191537 TTCTATCAA
1 TTCTCTCAA
47191546 TTCTCTCAA
1 TTCTCTCAA
* *
47191555 GTCTCTTAA
1 TTCTCTCAA
47191564 TTCTCTCAA
1 TTCTCTCAA
47191573 TTCTCTCAA
1 TTCTCTCAA
47191582 GATTTTAGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.44
Consensus pattern (9 bp):
TTCTCTCAA
Found at i:47195708 original size:41 final size:41
Alignment explanation
Indices: 47195610--47195711 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
47195600 TGATTCAGTA
* * *
47195610 CACCGGCACTTAGCCTACTAGACATATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
* * * * *
47195651 CACCGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
47195692 CACCGGCAATAAGCCTGCTA
1 CACCGGCAATAAGCCTGCTA
47195712 AGCTCTAAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:47196328 original size:21 final size:21
Alignment explanation
Indices: 47196283--47196328 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
47196273 TATAAGCATA
*
47196283 TATATACATATTCGAACATTG
1 TATATACATATTCAAACATTG
*
47196304 TATATACATATTTAAACCATT-
1 TATATACATATTCAAA-CATTG
47196325 TATA
1 TATA
47196329 ATTTGAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.41, C:0.13, G:0.04, T:0.41
Consensus pattern (21 bp):
TATATACATATTCAAACATTG
Found at i:47197386 original size:13 final size:13
Alignment explanation
Indices: 47197368--47197392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47197358 CAATCAAATG
47197368 CACACAAAATAAA
1 CACACAAAATAAA
47197381 CACACAAAATAA
1 CACACAAAATAA
47197393 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:47198255 original size:61 final size:57
Alignment explanation
Indices: 47198148--47198278 Score: 172
Period size: 61 Copynumber: 2.2 Consensus size: 57
47198138 ATCACTTTAA
* ** *
47198148 TATTAAATTAATATAATACTTATCAAGATAAATATTCGATTAAATTTAATATTAAATT
1 TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAA-C
*
47198206 TATTAAATTAATAGAATAGTTATCTACAAGATAAATATTAAATTAAATTTAATATTAAAC
1 TATTAAATTAATAGAATACTTA--T-CAAGATAAATATTAAATTAAATTTAATATTAAAC
*
47198266 TATTAAAATAATA
1 TATTAAATTAATA
47198279 TTATTTTTAG
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
58 20 0.31
60 13 0.20
61 31 0.48
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (57 bp):
TATTAAATTAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAATATTAAAC
Found at i:47206236 original size:32 final size:32
Alignment explanation
Indices: 47206199--47206272 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
47206189 AAAACTTCGG
* * *
47206199 GATTCTTGGGACATTTAAAAAATAAGGACGGC
1 GATTCTTGGGACATCTAAAAAATAAGGACCGA
* * *
47206231 GATTCTTGGGATATCTAAAACATGAGGACCGA
1 GATTCTTGGGACATCTAAAAAATAAGGACCGA
47206263 GATTCTTGGG
1 GATTCTTGGG
47206273 TTTTAAAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (32 bp):
GATTCTTGGGACATCTAAAAAATAAGGACCGA
Found at i:47217432 original size:17 final size:18
Alignment explanation
Indices: 47217412--47217452 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
47217402 TAAATTAATA
* *
47217412 TTTTATATT-TTTATATT
1 TTTTATATTATTAAAATT
47217429 TTTTAT-TTATTAAAATT
1 TTTTATATTATTAAAATT
47217446 TTTTATA
1 TTTTATA
47217453 CAATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATATTATTAAAATT
Found at i:47219959 original size:23 final size:23
Alignment explanation
Indices: 47219933--47219976 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
47219923 AACTTTTTTT
**
47219933 TATAATTTTTATGATTTTAAATA
1 TATAATTTTTAAAATTTTAAATA
*
47219956 TATATTTTTTAAAATTTTAAA
1 TATAATTTTTAAAATTTTAAA
47219977 GGGGTTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TATAATTTTTAAAATTTTAAATA
Found at i:47221025 original size:21 final size:23
Alignment explanation
Indices: 47221001--47221045 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
47220991 TAAAGAATAA
47221001 AGAG-AGTA-AAAAAAAAAAGAG
1 AGAGAAGTAGAAAAAAAAAAGAG
* *
47221022 AGAGAAGTAGAAGAACAAAAGAG
1 AGAGAAGTAGAAAAAAAAAAGAG
47221045 A
1 A
47221046 AGCATATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 4 0.20
23 12 0.60
ACGTcount: A:0.67, C:0.02, G:0.27, T:0.04
Consensus pattern (23 bp):
AGAGAAGTAGAAAAAAAAAAGAG
Found at i:47225665 original size:32 final size:32
Alignment explanation
Indices: 47225622--47225728 Score: 169
Period size: 32 Copynumber: 3.3 Consensus size: 32
47225612 TTTATATATT
* * *
47225622 TTATCAGGGTTCTTTAAACAAGGGTTATATAC
1 TTATCAGGGTTCCTCAAACAAGGGTCATATAC
*
47225654 TTATCAAGGTTCCTCAAACAAGGGTCATATAC
1 TTATCAGGGTTCCTCAAACAAGGGTCATATAC
47225686 TTATCAGGGTTCCTCAAACAAGGGTCATATAC
1 TTATCAGGGTTCCTCAAACAAGGGTCATATAC
*
47225718 TTATCATGGTT
1 TTATCAGGGTT
47225729 TGCAAACACA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (32 bp):
TTATCAGGGTTCCTCAAACAAGGGTCATATAC
Found at i:47225961 original size:22 final size:22
Alignment explanation
Indices: 47225936--47225979 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
47225926 TATAACTAAT
*
47225936 CAATCAATCAATCAAGTAATAA
1 CAATCAACCAATCAAGTAATAA
47225958 CAATCAACCAATCAAGTAATAA
1 CAATCAACCAATCAAGTAATAA
47225980 TCTACATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.20, G:0.05, T:0.20
Consensus pattern (22 bp):
CAATCAACCAATCAAGTAATAA
Found at i:47228724 original size:43 final size:43
Alignment explanation
Indices: 47228641--47228730 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
47228631 CATGGTCTGG
* * * **
47228641 AAATTTTGTGGTTTATCCCTAACTTATATGGCAATTTGTCTAC
1 AAATTTTGTGGTTTATCCCTAACCTACATGACAACGTGTCTAC
* *
47228684 AAATTTTGTGGTTTATCCAC-AACCTACATGACAGCGTGTCTGC
1 AAATTTTGTGGTTTATCC-CTAACCTACATGACAACGTGTCTAC
47228727 AAAT
1 AAAT
47228731 ATTAATGGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (43 bp):
AAATTTTGTGGTTTATCCCTAACCTACATGACAACGTGTCTAC
Found at i:47231556 original size:18 final size:17
Alignment explanation
Indices: 47231525--47231573 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
47231515 TCTCATTAAC
47231525 ACCATAATTCAATTATCA-
1 ACCA-AATTCAATT-TCAT
47231543 ACCAAATTCAAATTTCAT
1 ACCAAATTC-AATTTCAT
47231561 ACCAAATT-AATTT
1 ACCAAATTCAATTT
47231574 GCATTCAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.17
17 8 0.28
18 16 0.55
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (17 bp):
ACCAAATTCAATTTCAT
Found at i:47235079 original size:22 final size:20
Alignment explanation
Indices: 47235038--47235079 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
47235028 CCATTGTTGA
*
47235038 GAAATTGAAGAATTAGGCTT
1 GAAATTGAAGAATTAAGCTT
47235058 GAAATTGATAGAAGTTAAGCTT
1 GAAATTGA-AGAA-TTAAGCTT
47235080 AGATTATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 4 0.21
22 7 0.37
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (20 bp):
GAAATTGAAGAATTAAGCTT
Found at i:47240469 original size:20 final size:19
Alignment explanation
Indices: 47240425--47240474 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
47240415 TATGTATTTT
* *
47240425 TTAAATAATATTGATACAT
1 TTAAAAAATATTGATACAA
*
47240444 TTAAAACATATTGATAACAA
1 TTAAAAAATATTGAT-ACAA
47240464 TTAAAAAATAT
1 TTAAAAAATAT
47240475 ATTATTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (19 bp):
TTAAAAAATATTGATACAA
Found at i:47241614 original size:12 final size:13
Alignment explanation
Indices: 47241597--47241626 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
47241587 CGATTTACAG
47241597 AAAATAGAGAA-A
1 AAAATAGAGAATA
47241609 AAAATAGAGAATA
1 AAAATAGAGAATA
47241622 AAAAT
1 AAAAT
47241627 CAATCCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAATAGAGAATA
Found at i:47241956 original size:14 final size:14
Alignment explanation
Indices: 47241937--47241985 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
47241927 TGGGCATTTG
47241937 GGCTAGTTGGGTTT
1 GGCTAGTTGGGTTT
47241951 GGCTAG--GGGATTT
1 GGCTAGTTGGG-TTT
47241964 GGGCTAGTTGGGTTT
1 -GGCTAGTTGGGTTT
*
47241979 GGGTAGT
1 GGCTAGT
47241986 GGATTTGGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
12 3 0.10
13 3 0.10
14 18 0.60
15 3 0.10
16 3 0.10
ACGTcount: A:0.10, C:0.06, G:0.47, T:0.37
Consensus pattern (14 bp):
GGCTAGTTGGGTTT
Found at i:47241964 original size:28 final size:28
Alignment explanation
Indices: 47241932--47241995 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
47241922 GGTCATGGGC
47241932 ATTTGGGCTAGTTGGGTTTGGCTAGGGG
1 ATTTGGGCTAGTTGGGTTTGGCTAGGGG
* *
47241960 ATTTGGGCTAGTTGGGTTTGGGTAGTGG
1 ATTTGGGCTAGTTGGGTTTGGCTAGGGG
47241988 ATTTGGGC
1 ATTTGGGC
47241996 CATTAGGCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.11, C:0.06, G:0.45, T:0.38
Consensus pattern (28 bp):
ATTTGGGCTAGTTGGGTTTGGCTAGGGG
Found at i:47249509 original size:103 final size:103
Alignment explanation
Indices: 47249330--47249535 Score: 333
Period size: 103 Copynumber: 2.0 Consensus size: 103
47249320 GTGTAAAAAT
47249330 TAATCGCTTTTGAATTTACCTAAGTCCAAAATTTGTTGCAGAATATCGTGTTATATTTATAGTGC
1 TAATCGCTTTTGAATTTACCTAAGTCCAAAATTTGTTGCAGAATATCGTGTTATATTTATAGTGC
47249395 TTCTGGTGTGTTATCGGGGGCAGAGGTAAAGCCTTCGG
66 TTCTGGTGTGTTATCGGGGGCAGAGGTAAAGCCTTCGG
* ** * **
47249433 TAATCGCTTTTGAATTTA-TTGAAGTCCAGCATTTGTTGCGGGCTATCGTGTTATATTTATAGTG
1 TAATCGCTTTTGAATTTACCT-AAGTCCAAAATTTGTTGCAGAATATCGTGTTATATTTATAGTG
*
47249497 CTTCTGGTGTGTTATTGGGGGCAGAGGTAAAGCCTTCGG
65 CTTCTGGTGTGTTATCGGGGGCAGAGGTAAAGCCTTCGG
47249536 GATTGGCACT
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 1 0.01
103 94 0.99
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (103 bp):
TAATCGCTTTTGAATTTACCTAAGTCCAAAATTTGTTGCAGAATATCGTGTTATATTTATAGTGC
TTCTGGTGTGTTATCGGGGGCAGAGGTAAAGCCTTCGG
Found at i:47253027 original size:14 final size:14
Alignment explanation
Indices: 47253008--47253077 Score: 58
Period size: 14 Copynumber: 5.1 Consensus size: 14
47252998 TTTGGGAAAG
47253008 AAATATATATTTTT
1 AAATATATATTTTT
47253022 AAATATATA--TTT
1 AAATATATATTTTT
*
47253034 AAAAATA-ATTTTAT
1 AAATATATATTTT-T
*
47253048 ATAAT-TTTATTTTTT
1 A-AATATATA-TTTTT
*
47253063 AAAAATATATTTTT
1 AAATATATATTTTT
47253077 A
1 A
47253078 CTTAATTTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
11 1 0.02
12 9 0.20
13 2 0.05
14 20 0.45
15 8 0.18
16 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
AAATATATATTTTT
Found at i:47253993 original size:21 final size:21
Alignment explanation
Indices: 47253967--47254019 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
47253957 TAAATAAAAT
* *
47253967 AATAAATTGAAATTTATTTAA
1 AATAAAATAAAATTTATTTAA
47253988 AATAAAATAAAATTTATTTAAA
1 AATAAAATAAAATTTATTT-AA
47254010 AATTAAAATA
1 AA-TAAAATA
47254020 TATAGTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 17 0.61
22 4 0.14
23 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AATAAAATAAAATTTATTTAA
Found at i:47254668 original size:16 final size:18
Alignment explanation
Indices: 47254641--47254673 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
47254631 ATTTATCTTT
47254641 GTTTTAATTTTG-AGCCC
1 GTTTTAATTTTGCAGCCC
47254658 GTTTTAA-TTTGCAGCC
1 GTTTTAATTTTGCAGCC
47254674 TATTTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (18 bp):
GTTTTAATTTTGCAGCCC
Found at i:47255643 original size:20 final size:21
Alignment explanation
Indices: 47255604--47255645 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
47255594 ATAGGGTAGA
*
47255604 GAAAAGAGAATAGAGGTTGAGG
1 GAAAAGAAAATAGA-GTTGAGG
47255626 GAAAAGAAAATAGA-TTGAGG
1 GAAAAGAAAATAGAGTTGAGG
47255646 AAATGGTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.36, T:0.14
Consensus pattern (21 bp):
GAAAAGAAAATAGAGTTGAGG
Found at i:47271296 original size:33 final size:28
Alignment explanation
Indices: 47271238--47271341 Score: 91
Period size: 28 Copynumber: 3.5 Consensus size: 28
47271228 AATATACAAC
* * *
47271238 ATACAATAATAGTCTAGGCCTTAGCCCT
1 ATACAGTAATAGTGTGGGCCTTAGCCCT
* *
47271266 ATTCAGTATCAGTACAGTGTGGGCCTTAGCCTT
1 ATACAGTA--A-T--AGTGTGGGCCTTAGCCCT
*
47271299 ATACAGTAATAGTGTGGGCCTTAGCCCA
1 ATACAGTAATAGTGTGGGCCTTAGCCCT
* *
47271327 ATACAATAACAGTGT
1 ATACAGTAATAGTGT
47271342 AATAATGCAA
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
28 35 0.57
30 2 0.03
31 2 0.03
33 22 0.36
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (28 bp):
ATACAGTAATAGTGTGGGCCTTAGCCCT
Found at i:47271466 original size:26 final size:26
Alignment explanation
Indices: 47271437--47271490 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
47271427 AACACACTAA
47271437 TATCGCAACAAAGCTGCCAGTAAAAG
1 TATCGCAACAAAGCTGCCAGTAAAAG
* * * *
47271463 TATCGCAGCGAAGCTGCTAGTAACAG
1 TATCGCAACAAAGCTGCCAGTAAAAG
47271489 TA
1 TA
47271491 CATGTGGCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
TATCGCAACAAAGCTGCCAGTAAAAG
Found at i:47271994 original size:27 final size:27
Alignment explanation
Indices: 47271650--47271996 Score: 338
Period size: 27 Copynumber: 12.9 Consensus size: 27
47271640 GGGTATAACA
* **
47271650 GTCATTTTACCCTATGGGCATATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * *
47271677 GTCATTTTACCCTTTGAGAGTATTTTG
1 GTCATTTTACCCTTTGGGGGTATTTCG
*
47271704 GTCATTTTACCCTTTGGGGATATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* *
47271731 GTCATTTTACCGTTTGAGGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* *
47271758 GTTATTTTACCCTTCGGGGGTATTT-G
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * *
47271784 ATTATTTTACCCTTCGGGGGTATTTCA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* ** *
47271811 GTCATTCTACCCTTCAGGAGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
*
47271838 GTCATTTTACCCTTTGGAGGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * ** **
47271865 GTTATTCTACCATTCAGGGGTATTTTA
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * *
47271892 GTCATTTTA-TCTTCGGGGCTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * *
47271918 GTGATTTTATCCTTTAGGGGTATTTTG
1 GTCATTTTACCCTTTGGGGGTATTTCG
* * * *
47271945 GTTATTTTACCCTTAGAGAGTATTTCG
1 GTCATTTTACCCTTTGGGGGTATTTCG
47271972 GTCATTTTACCCTTTGGGGGTATTT
1 GTCATTTTACCCTTTGGGGGTATTT
47271997 TGGGCTTACC
Statistics
Matches: 256, Mismatches: 62, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
26 44 0.17
27 212 0.83
ACGTcount: A:0.16, C:0.17, G:0.22, T:0.45
Consensus pattern (27 bp):
GTCATTTTACCCTTTGGGGGTATTTCG
Found at i:47271997 original size:107 final size:107
Alignment explanation
Indices: 47271678--47271997 Score: 369
Period size: 107 Copynumber: 3.0 Consensus size: 107
47271668 CATATTTCGG
* * *
47271678 TCATTTTACCCTTTGAGAG-TATTTTGGTCATTTTACCCTTT-GGGGATATTTCGGTCATTTTAC
1 TCATTTTACCCTTCG-GGGCTATTTCGGTCATTTTACCCTTTAGGGG-TATTTCGGTCATTTTAC
* * *
47271741 CGTTTGAGGGTATTTCGGTTATTTTACCCTTCGGGGGTATTTGA
64 CCTTTGAGAGTATTTCGGTTATTTTACCCTTCGGGGGTATTTTA
* * * * * *
47271785 TTATTTTACCCTTCGGGGGTATTTCAGTCATTCTACCCTTCAGGAGTATTTCGGTCATTTTACCC
1 TCATTTTACCCTTCGGGGCTATTTCGGTCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCC
* * *
47271850 TTTG-GAGGTATTTCGGTTATTCTACCATTCAGGGGTATTTTA
66 TTTGAGA-GTATTTCGGTTATTTTACCCTTCGGGGGTATTTTA
* * * * *
47271892 GTCATTTTA-TCTTCGGGGCTATTTCGGTGATTTTATCCTTTAGGGGTATTTTGGTTATTTTACC
1 -TCATTTTACCCTTCGGGGCTATTTCGGTCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACC
* * *
47271956 CTTAGAGAGTATTTCGGTCATTTTACCCTTTGGGGGTATTTT
65 CTTTGAGAGTATTTCGGTTATTTTACCCTTCGGGGGTATTTT
47271998 GGGCTTACCA
Statistics
Matches: 177, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
106 3 0.02
107 162 0.92
108 12 0.07
ACGTcount: A:0.16, C:0.17, G:0.22, T:0.46
Consensus pattern (107 bp):
TCATTTTACCCTTCGGGGCTATTTCGGTCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCC
TTTGAGAGTATTTCGGTTATTTTACCCTTCGGGGGTATTTTA
Found at i:47277951 original size:15 final size:15
Alignment explanation
Indices: 47277931--47277964 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
47277921 ATTCCAGTAA
47277931 TTATTAATAGATGTC
1 TTATTAATAGATGTC
47277946 TTATTAATAGATGTC
1 TTATTAATAGATGTC
47277961 TTAT
1 TTAT
47277965 GAGAAGCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.50
Consensus pattern (15 bp):
TTATTAATAGATGTC
Found at i:47278753 original size:28 final size:28
Alignment explanation
Indices: 47278671--47278757 Score: 84
Period size: 28 Copynumber: 2.9 Consensus size: 28
47278661 ATTATACAAC
* * *
47278671 ATACAGTAACAGTCTGGGCCTGAGCCCT
1 ATACAGTAACAGTGTGGGCCTTAGCCCG
* *
47278699 ATTCAGTACCAATGCAGTGTGGTCCTTAGCCCG
1 ATACAGT---AA--CAGTGTGGGCCTTAGCCCG
47278732 ATACAGTAACAGTGTGGGCCTTAGCC
1 ATACAGTAACAGTGTGGGCCTTAGCC
47278758 AAATACAATA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
28 22 0.47
30 2 0.04
31 2 0.04
33 21 0.45
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Consensus pattern (28 bp):
ATACAGTAACAGTGTGGGCCTTAGCCCG
Found at i:47278772 original size:28 final size:28
Alignment explanation
Indices: 47278708--47278772 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
47278698 TATTCAGTAC
* **
47278708 CAAT-GCAGTGTGGTCCTTAGCCCGATA
1 CAATAGCAGTGTGGGCCTTAGCCAAATA
* *
47278735 CAGTAACAGTGTGGGCCTTAGCCAAATA
1 CAATAGCAGTGTGGGCCTTAGCCAAATA
47278763 CAATAGCAGT
1 CAATAGCAGT
47278773 TTGATAATGC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (28 bp):
CAATAGCAGTGTGGGCCTTAGCCAAATA
Found at i:47279171 original size:27 final size:26
Alignment explanation
Indices: 47279134--47279351 Score: 224
Period size: 27 Copynumber: 8.1 Consensus size: 26
47279124 ATAGGCGTAA
*
47279134 TTCGATTATTTTACCCTTCGGGGCTAT
1 TTCGATCATTTTACCCTTCGGGG-TAT
*
47279161 TTCTG-TCATTTTACCCTTTAGGGGTAT
1 TTC-GATCATTTTACCC-TTCGGGGTAT
* *
47279188 TTCGATCATTTTATCCTTTGAGGGTAT
1 TTCGATCATTTTACCCTTCG-GGGTAT
* * *
47279215 TTCAATCATTTTACCCTTCGAAGATAT
1 TTCGATCATTTTACCCTTCG-GGGTAT
*
47279242 TTCGATCATTTTACCCTTCGAGGTTAT
1 TTCGATCATTTTACCCTTCG-GGGTAT
*
47279269 TTCGATCATTTTACCCTTTGGGAGTAT
1 TTCGATCATTTTACCCTTCGGG-GTAT
*
47279296 TTC-AGTCATTTTACCTTTCGTGGGTAT
1 TTCGA-TCATTTTACCCTTCG-GGGTAT
* *
47279323 TTCGATCATTTTACCATTTGGGGATAT
1 TTCGATCATTTTACCCTTCGGGG-TAT
47279350 TT
1 TT
47279352 TGGGCTTACC
Statistics
Matches: 164, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.06
27 144 0.88
28 10 0.06
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (26 bp):
TTCGATCATTTTACCCTTCGGGGTAT
Found at i:47279228 original size:81 final size:79
Alignment explanation
Indices: 47279141--47279351 Score: 264
Period size: 81 Copynumber: 2.6 Consensus size: 79
47279131 TAATTCGATT
*
47279141 ATTTTACCCTTCGGGGCTATTTCTG-TCATTTTACCCTTTAGGGGTATTTCGATCATTTTATCCT
1 ATTTTACCCTTCGGGG-TATTTC-GATCATTTTACCCTTT-GGGGTATTTCGATCATTTTACCCT
47279205 TTGAGG-GTATTTCAATC
63 TTG-GGAGTATTTCAATC
* * * *
47279222 ATTTTACCCTTCGAAGATATTTCGATCATTTTACCCTTCGAGGTTATTTCGATCATTTTACCCTT
1 ATTTTACCCTTCG-GGGTATTTCGATCATTTTACCCTTTG-GGGTATTTCGATCATTTTACCCTT
*
47279287 TGGGAGTATTTCAGTC
64 TGGGAGTATTTCAATC
* *
47279303 ATTTTACCTTTCGTGGGTATTTCGATCATTTTACCATTTGGGGATATTT
1 ATTTTACCCTTCG-GGGTATTTCGATCATTTTACCCTTTGGGG-TATTT
47279352 TGGGCTTACC
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
80 6 0.05
81 105 0.94
82 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (79 bp):
ATTTTACCCTTCGGGGTATTTCGATCATTTTACCCTTTGGGGTATTTCGATCATTTTACCCTTTG
GGAGTATTTCAATC
Found at i:47283106 original size:17 final size:18
Alignment explanation
Indices: 47283084--47283124 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
47283074 ATGTATAAGT
47283084 ATGTATAT-TAATTA-AAA
1 ATGTATATGT-ATTATAAA
*
47283101 ATGTATGTGTATTATAAA
1 ATGTATATGTATTATAAA
47283119 ATGTAT
1 ATGTAT
47283125 GCATGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (18 bp):
ATGTATATGTATTATAAA
Found at i:47283106 original size:21 final size:18
Alignment explanation
Indices: 47283082--47283125 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
47283072 ACATGTATAA
47283082 GTATGTATATTAATTAAAAAT
1 GTATGTATATT-A-T-AAAAT
*
47283103 GTATGTGTATTATAAAAT
1 GTATGTATATTATAAAAT
47283121 GTATG
1 GTATG
47283126 CATGTATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 1 0.05
21 10 0.45
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (18 bp):
GTATGTATATTATAAAAT
Found at i:47287180 original size:24 final size:22
Alignment explanation
Indices: 47287153--47287233 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 22
47287143 ATCAAGTTGC
47287153 ACGTTGTGGATAAGTCACTCAATA
1 ACGTTGTGG-TAAG-CACTCAATA
*
47287177 ACGTTGTGGCCAAGCTACTCAATA
1 ACGTTGTGG-TAAGC-ACTCAATA
* *
47287201 GCATTGTGGTCAAGCCACTCAATA
1 ACGTTGTGGT-AAG-CACTCAATA
47287225 ACGTTGTGG
1 ACGTTGTGG
47287234 CCAGGCCATC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.02
24 45 0.96
25 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (22 bp):
ACGTTGTGGTAAGCACTCAATA
Found at i:47287227 original size:48 final size:48
Alignment explanation
Indices: 47287168--47287272 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
47287158 GTGGATAAGT
* *
47287168 CACTCAATAACGTTGTGGCCAAGCTA-CTCAATAGCATTGTGGTCAAGC
1 CACTCAATAACGTTGTGGCCAAGCCATC-CAATAACATTGTGGTCAAGC
*
47287216 CACTCAATAACGTTGTGGCCAGGCCATCCAATAACATTGTGGTCAAGC
1 CACTCAATAACGTTGTGGCCAAGCCATCCAATAACATTGTGGTCAAGC
47287264 CACTCAATA
1 CACTCAATA
47287273 TTGTAGTAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
48 52 0.98
49 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
CACTCAATAACGTTGTGGCCAAGCCATCCAATAACATTGTGGTCAAGC
Found at i:47287241 original size:24 final size:24
Alignment explanation
Indices: 47287168--47287272 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
47287158 GTGGATAAGT
*
47287168 CACTCAATAACGTTGTGGCCAAGC
1 CACTCAATAACATTGTGGCCAAGC
* * *
47287192 TACTCAATAGCATTGTGGTCAAGC
1 CACTCAATAACATTGTGGCCAAGC
* *
47287216 CACTCAATAACGTTGTGGCCAGGC
1 CACTCAATAACATTGTGGCCAAGC
*
47287240 CA-TCCAATAACATTGTGGTCAAGC
1 CACT-CAATAACATTGTGGCCAAGC
47287264 CACTCAATA
1 CACTCAATA
47287273 TTGTAGTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
23 1 0.01
24 65 0.97
25 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (24 bp):
CACTCAATAACATTGTGGCCAAGC
Found at i:47287429 original size:42 final size:42
Alignment explanation
Indices: 47287360--47287470 Score: 161
Period size: 42 Copynumber: 2.6 Consensus size: 42
47287350 ATTTTCAGTA
* * * *
47287360 GACATGCTTAACATGCGATTCAGATTTATAATCTAA-ATAGTT
1 GACATGCTTAACATGCAAATCATATTTATAATC-AACATAGTC
47287402 GACATGCTTAACATGCAAATCATATTTATAATCAACATAGTC
1 GACATGCTTAACATGCAAATCATATTTATAATCAACATAGTC
*
47287444 GGCATGCTTAACATGCAAATCATATTT
1 GACATGCTTAACATGCAAATCATATTT
47287471 CAATATCAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.03
42 61 0.97
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (42 bp):
GACATGCTTAACATGCAAATCATATTTATAATCAACATAGTC
Found at i:47287490 original size:42 final size:42
Alignment explanation
Indices: 47287356--47287491 Score: 159
Period size: 42 Copynumber: 3.2 Consensus size: 42
47287346 CAATATTTTC
* * * * *
47287356 AGTAGACATGCTTAACATGCGATTCAGATTTATAATCTAAAT
1 AGTAGGCATGCTTAACATGCAAATCATATTTATAATCAAAAT
* * *
47287398 AGTTGACATGCTTAACATGCAAATCATATTTATAATCAACAT
1 AGTAGGCATGCTTAACATGCAAATCATATTTATAATCAAAAT
*
47287440 AGTCGGCATGCTTAACATGCAAATCATATTTCA-ATATCAAAAT
1 AGTAGGCATGCTTAACATGCAAATCATATTT-ATA-ATCAAAAT
47287483 AG-AGGCATG
1 AGTAGGCATG
47287492 ATTTATTTAT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
42 72 0.88
43 10 0.12
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (42 bp):
AGTAGGCATGCTTAACATGCAAATCATATTTATAATCAAAAT
Found at i:47287873 original size:19 final size:19
Alignment explanation
Indices: 47287849--47287886 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
47287839 GGTTCCAACT
47287849 CCAAGGGAAAAAACTGGTC
1 CCAAGGGAAAAAACTGGTC
47287868 CCAAGGGAAAAAACTGGTC
1 CCAAGGGAAAAAACTGGTC
47287887 TTGATTCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (19 bp):
CCAAGGGAAAAAACTGGTC
Found at i:47295679 original size:75 final size:75
Alignment explanation
Indices: 47295453--47295810 Score: 413
Period size: 75 Copynumber: 4.7 Consensus size: 75
47295443 TTTCAAAAAT
* *
47295453 TATTTTTCAATTTCTGTTTTTCTCAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TATTTTTCAATTTCTATTTTTCTAAAATCAACTCATAATG-GAGAGGTGAGTTGAGCCTCGGGTC
47295518 ACACGC-AGAGG
65 ACACGCTA-AGG
** * * *
47295529 TATTTTTCAATTTCTATTTTTGAAAAAATCAACTCATAATGCGATAGGTGAGTTGAACCTCAGG-
1 TATTTTTCAATTTCTATTTTT-CTAAAATCAACTCATAATG-GAGAGGTGAGTTGAGCCTCGGGT
47295593 CACACGCTAAGG
64 CACACGCTAAGG
* * *
47295605 TATTTTTTAATTTCTATTTTTTTAAAATCAACTCATAATGGATAGGTGAGTTGAGCCTCGGGTCA
1 TATTTTTCAATTTCTATTTTTCTAAAATCAACTCATAATGGAGAGGTGAGTTGAGCCTCGGGTCA
* *
47295670 TACACTAAGG
66 CACGCTAAGG
* * * * *
47295680 TATTTTT-AATTTATGTTTTTCAAAAATCAACTCATAATCTGAGAGGTGAGTTGAGCATCGGGTC
1 TATTTTTCAATTTCTATTTTTCTAAAATCAACTCATAAT-GGAGAGGTGAGTTGAGCCTCGGGTC
*
47295744 ACATC-CTGAGG
65 ACA-CGCTAAGG
* * *
47295755 TA-TTTTCAATTTCTATTTCT-TAAAGATCAACTCATAATCCGAGAGGTGAATTGAGC
1 TATTTTTCAATTTCTATTTTTCTAAA-ATCAACTCATAAT-GGAGAGGTGAGTTGAGC
47295811 TTTAAATCAC
Statistics
Matches: 246, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
74 54 0.22
75 104 0.42
76 51 0.21
77 37 0.15
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (75 bp):
TATTTTTCAATTTCTATTTTTCTAAAATCAACTCATAATGGAGAGGTGAGTTGAGCCTCGGGTCA
CACGCTAAGG
Found at i:47295766 original size:149 final size:151
Alignment explanation
Indices: 47295453--47295810 Score: 442
Period size: 149 Copynumber: 2.4 Consensus size: 151
47295443 TTTCAAAAAT
* * *
47295453 TATTTTTCAATTTCTGTTTTTCTCAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTC
1 TATTTTTCAATTTCTATTTTTTTAAAATCAACTCATAATG-GAGAGGTGAGTTGAGCCTCGGGTC
* * *
47295518 ACACGCAGAGGTATTTTTCAATTTCTATTTTTGAAAAAATCAACTCATAATGCGATAGGTGAGTT
65 ACACACAGAGGTATTTTTCAATTTATATTTTTGAAAAAATCAACTCATAATGCGAGAGGTGAGTT
*
47295583 GAACCTCAGGCACACGCTAAGG
130 GAACATCAGGCACACGCTAAGG
* *
47295605 TATTTTTTAATTTCTATTTTTTTAAAATCAACTCATAATGGATAGGTGAGTTGAGCCTCGGGTCA
1 TATTTTTCAATTTCTATTTTTTTAAAATCAACTCATAATGGAGAGGTGAGTTGAGCCTCGGGTCA
* * *
47295670 TACACTA-AGGTATTTTT-AATTTATGTTTTT-CAAAAATCAACTCATAAT-CTGAGAGGTGAGT
66 CACAC-AGAGGTATTTTTCAATTTATATTTTTGAAAAAATCAACTCATAATGC-GAGAGGTGAGT
* * *
47295731 TGAGCATCGGGTCACATC-CTGAGG
129 TGAACATCAGG-CACA-CGCTAAGG
* * *
47295755 TA-TTTTCAATTTCTA-TTTCTTAAAGATCAACTCATAATCCGAGAGGTGAATTGAGC
1 TATTTTTCAATTTCTATTTTTTTAAA-ATCAACTCATAAT-GGAGAGGTGAGTTGAGC
47295811 TTTAAATCAC
Statistics
Matches: 180, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
148 9 0.05
149 60 0.33
150 36 0.20
151 38 0.21
152 37 0.21
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (151 bp):
TATTTTTCAATTTCTATTTTTTTAAAATCAACTCATAATGGAGAGGTGAGTTGAGCCTCGGGTCA
CACACAGAGGTATTTTTCAATTTATATTTTTGAAAAAATCAACTCATAATGCGAGAGGTGAGTTG
AACATCAGGCACACGCTAAGG
Found at i:47295842 original size:75 final size:75
Alignment explanation
Indices: 47295705--47295843 Score: 163
Period size: 75 Copynumber: 1.9 Consensus size: 75
47295695 TTTTTCAAAA
* * *** * *
47295705 ATCAACTCATAATCTGAGAGGTGAGTTGAGCATCGGGTCACATCCTGAGGTATTTTCAATTTCTA
1 ATCAACTCATAATCCGAGAGGTGAATTGAGCATCAAATCACATCCTGAGCTAGTTTCAATTTCTA
47295770 TTTCTTAAAG
66 TTTCTTAAAG
* * * *
47295780 ATCAACTCATAATCCGAGAGGTGAATTGAGCTTTAAATCACA-CACTTAGCTAGTTTCGATTTCT
1 ATCAACTCATAATCCGAGAGGTGAATTGAGCATCAAATCACATC-CTGAGCTAGTTTCAATTTCT
47295844 GGCTTTCAAA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
74 1 0.02
75 51 0.98
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (75 bp):
ATCAACTCATAATCCGAGAGGTGAATTGAGCATCAAATCACATCCTGAGCTAGTTTCAATTTCTA
TTTCTTAAAG
Found at i:47295855 original size:149 final size:149
Alignment explanation
Indices: 47295453--47295854 Score: 330
Period size: 150 Copynumber: 2.7 Consensus size: 149
47295443 TTTCAAAAAT
* * * ***
47295453 TATTTTTCAATTTCTGTTTT-TCTCAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT
1 TATTTTTCAATTTCTATTTTCT-TAAAATCAACTCATAAT-CGAGAGGTGAATTGAGCCTCAAAT
* * * * *** * *
47295517 CACACGC-AGAGGTATTTTTCAATTTCTATTTTTGAAAAAATCAACTCATAATGCGATAGGTGAG
64 CACACACTA-AGCTA-GTTTCAATTTATGGCTTT-CAAAAATCAACTCATAATGCGAGAGGTGAG
*
47295581 TTGAACCTCAGGCACACGCTAAGG
126 TTGAACATCAGGCACACGCTAAGG
* * * * * ***
47295605 TATTTTTTAATTTCTATTTTTTTAAAATCAACTCATAATGGATAGGTGAGTTGAGCCTCGGGTCA
1 TATTTTTCAATTTCTATTTTCTTAAAATCAACTCATAATCGAGAGGTGAATTGAGCCTCAAATCA
* * * * **
47295670 TACACTAAGGTATTTTTAATTTATGTTTTTCAAAAATCAACTCATAAT-CTGAGAGGTGAGTTGA
66 CACACTAAGCTAGTTTCAATTTATGGCTTTCAAAAATCAACTCATAATGC-GAGAGGTGAGTTGA
* * *
47295734 GCATCGGGTCACATC-CTGAGG
130 ACATCAGG-CACA-CGCTAAGG
* *
47295755 TA-TTTTCAATTTCTA-TTTCTTAAAGATCAACTCATAATCCGAGAGGTGAATTGAGCTTTAAAT
1 TATTTTTCAATTTCTATTTTCTTAAA-ATCAACTCATAAT-CGAGAGGTGAATTGAGCCTCAAAT
* * *
47295818 CACACACTTAGCTAGTTTCGATTTCTGGCTTTCAAAA
64 CACACACTAAGCTAGTTTCAATTTATGGCTTTCAAAA
47295855 TTTTTTTGAC
Statistics
Matches: 208, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
148 9 0.04
149 60 0.29
150 70 0.34
151 33 0.16
152 35 0.17
153 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.36
Consensus pattern (149 bp):
TATTTTTCAATTTCTATTTTCTTAAAATCAACTCATAATCGAGAGGTGAATTGAGCCTCAAATCA
CACACTAAGCTAGTTTCAATTTATGGCTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAA
CATCAGGCACACGCTAAGG
Found at i:47296723 original size:23 final size:24
Alignment explanation
Indices: 47296697--47296750 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
47296687 AGGAAAGGAG
* *
47296697 AGAAAGAAAAAATATGAGA-GAAA
1 AGAAAGAAAAAAGAGGAGAGGAAA
*
47296720 AGAAA-AAAGAAGAGGAGAGGAAA
1 AGAAAGAAAAAAGAGGAGAGGAAA
*
47296743 AGGAAGAA
1 AGAAAGAA
47296751 GAGAACGCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 10 0.40
23 13 0.52
24 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (24 bp):
AGAAAGAAAAAAGAGGAGAGGAAA
Found at i:47296737 original size:20 final size:21
Alignment explanation
Indices: 47296682--47296738 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
47296672 GAAAAAATAT
47296682 AAAAAAGGAA-AGGAGAGAAAG
1 AAAAAA-GAAGAGGAGAGAAAG
* *
47296703 AAAAAATATGA-GAGA-AAAG
1 AAAAAAGAAGAGGAGAGAAAG
47296722 AAAAAAGAAGAGGAGAG
1 AAAAAAGAAGAGGAGAG
47296739 GAAAAGGAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 13 0.45
20 9 0.31
21 7 0.24
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (21 bp):
AAAAAAGAAGAGGAGAGAAAG
Found at i:47296865 original size:13 final size:13
Alignment explanation
Indices: 47296843--47296884 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 13
47296833 GGAAAGAGAA
47296843 AAAGAGAAAAAAG
1 AAAGAGAAAAAAG
47296856 -AA-AGAAAAAAG
1 AAAGAGAAAAAAG
47296867 AGAAGAGGAAAAAAG
1 A-AAGA-GAAAAAAG
47296882 AAA
1 AAA
47296885 ACGGAAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
13 2 0.08
14 3 0.12
15 9 0.36
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (13 bp):
AAAGAGAAAAAAG
Found at i:47296872 original size:12 final size:11
Alignment explanation
Indices: 47296834--47296913 Score: 51
Period size: 11 Copynumber: 7.3 Consensus size: 11
47296824 CAACTAGGGG
47296834 GAAAGAGAAAAA
1 GAAAGA-AAAAA
47296846 G--AGAAAAAA
1 GAAAGAAAAAA
47296855 GAAAGAAAAAA
1 GAAAGAAAAAA
**
47296866 GAGAAGAGGAAA
1 GA-AAGAAAAAA
**
47296878 -AAAGAAAACG
1 GAAAGAAAAAA
47296888 GAAAGAGAAAACA
1 GAAAGA-AAAA-A
*
47296901 GAAA-AAAATA
1 GAAAGAAAAAA
47296911 GAA
1 GAA
47296914 GAACAAGAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
9 6 0.11
10 12 0.23
11 19 0.36
12 12 0.23
13 4 0.08
ACGTcount: A:0.72, C:0.03, G:0.24, T:0.01
Consensus pattern (11 bp):
GAAAGAAAAAA
Found at i:47296884 original size:33 final size:33
Alignment explanation
Indices: 47296836--47296903 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
47296826 ACTAGGGGGA
*
47296836 AAGAGAAAAAGAGAAAAAAGAAAGAAAAAAGAG
1 AAGAGAAAAAGAGAAAAAAGAAAGAAAAAACAG
** *
47296869 AAGAGGAAAAA-AGAAAACGGAAAGAGAAAACAG
1 AAGA-GAAAAAGAGAAAAAAGAAAGAAAAAACAG
47296902 AA
1 AA
47296904 AAAAATAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (33 bp):
AAGAGAAAAAGAGAAAAAAGAAAGAAAAAACAG
Found at i:47297520 original size:17 final size:17
Alignment explanation
Indices: 47297498--47297550 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
47297488 GTAATCTATC
47297498 AAAATTTTCGTGTTTCA
1 AAAATTTTCGTGTTTCA
*
47297515 AAAATTTGCGTGTTTTCA
1 AAAATTTTCGTG-TTTCA
* *
47297533 AAAATTCTCTTGTTTCA
1 AAAATTTTCGTGTTTCA
47297550 A
1 A
47297551 TCTGATCCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 17 0.55
18 14 0.45
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.45
Consensus pattern (17 bp):
AAAATTTTCGTGTTTCA
Found at i:47299406 original size:27 final size:26
Alignment explanation
Indices: 47299374--47299552 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 26
47299364 TTAAATTGTA
47299374 TAGCACTAAGTGTGCGATTCGACTATG
1 TAGCACTAAGTGTGCGATT-GACTATG
* * *
47299401 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCG-ATTGACTATG
*
47299428 -ATGCACTAAGTGTGCGAATTGACCATG
1 TA-GCACTAAGTGTGCG-ATTGACTATG
**
47299455 CGGCACTAAGTGTGCGAGTCTGACTATG
1 TAGCACTAAGTGTGCGA-T-TGACTATG
* *
47299483 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGA-TTGACTATG
* * *
47299510 TGGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGA-TTGACTATG
*
47299537 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
47299553 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
TAGCACTAAGTGTGCGATTGACTATG
Found at i:47299491 original size:82 final size:81
Alignment explanation
Indices: 47299376--47299531 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
47299366 AAATTGTATA
* * *
47299376 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
47299440 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47299457 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
47299522 TGCGAGTTGA
65 TGCGAATTGA
47299532 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47299543 original size:82 final size:81
Alignment explanation
Indices: 47299372--47299552 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
47299362 GATTAAATTG
* * *
47299372 TATAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
47299437 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
*** ** *
47299453 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TATAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
47299517 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
*
47299535 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
47299553 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 19 0.23
82 63 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47318671 original size:3 final size:3
Alignment explanation
Indices: 47318665--47318690 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
47318655 CTACTACTAC
47318665 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
47318691 AACTCCAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:47319030 original size:3 final size:3
Alignment explanation
Indices: 47319022--47319056 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
47319012 TTTCTACACA
47319022 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
47319057 AAGTATTGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:47319259 original size:29 final size:30
Alignment explanation
Indices: 47319234--47319311 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
47319224 ATGCAATTTA
47319234 ACATAT-AATCTTTAATT-TGGTACAATTGT
1 ACATATAAAT-TTTAATTGTGGTACAATTGT
* *
47319263 ACATATGAAATTTTAATTGTGGTTCAAATGT
1 ACATAT-AAATTTTAATTGTGGTACAATTGT
*
47319294 ATATATGAAATTTTAATT
1 ACATAT-AAATTTTAATT
47319312 TTGATTCAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 6 0.14
30 7 0.16
31 30 0.70
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (30 bp):
ACATATAAATTTTAATTGTGGTACAATTGT
Found at i:47319302 original size:31 final size:30
Alignment explanation
Indices: 47319244--47319312 Score: 102
Period size: 31 Copynumber: 2.3 Consensus size: 30
47319234 ACATATAATC
* *
47319244 TTTAATTTGGTACAATTGTACATATGAAAT
1 TTTAATTTGGTTCAAATGTACATATGAAAT
*
47319274 TTTAATTGTGGTTCAAATGTATATATGAAAT
1 TTTAATT-TGGTTCAAATGTACATATGAAAT
47319305 TTTAATTT
1 TTTAATTT
47319313 TGATTCAATC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
30 8 0.23
31 27 0.77
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (30 bp):
TTTAATTTGGTTCAAATGTACATATGAAAT
Found at i:47319320 original size:31 final size:31
Alignment explanation
Indices: 47319260--47319320 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
47319250 TTGGTACAAT
*
47319260 TGTACATATGAAATTTTAATTGTGGTTCAAA
1 TGTACATATGAAATTTTAATTGTGATTCAAA
* *
47319291 TGTATATATGAAATTTTAATTTTGATTCAA
1 TGTACATATGAAATTTTAATTGTGATTCAA
47319321 TCATAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (31 bp):
TGTACATATGAAATTTTAATTGTGATTCAAA
Found at i:47319522 original size:31 final size:31
Alignment explanation
Indices: 47319451--47319531 Score: 112
Period size: 29 Copynumber: 2.6 Consensus size: 31
47319441 TGAGAGTTGG
* * *
47319451 ATTAAATCAAAATTTCATGTATGAAATTGCAC
1 ATTAAATCAAAA-TTCATGTATAAAACTACAC
47319483 A--AAATCAAAATTCATGTATAAAACTACAC
1 ATTAAATCAAAATTCATGTATAAAACTACAC
47319512 ATTAAATCAAAATTCATGTA
1 ATTAAATCAAAATTCATGTA
47319532 CAATTTTGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 17 0.39
30 9 0.20
31 17 0.39
32 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (31 bp):
ATTAAATCAAAATTCATGTATAAAACTACAC
Found at i:47323090 original size:27 final size:27
Alignment explanation
Indices: 47323059--47323146 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
47323049 TAAGAAACAA
47323059 CCTTTGTGGCGTACTCTGAAAGAATAG
1 CCTTTGTGGCGTACTCTGAAAGAATAG
* * *
47323086 CCTTTGTGGCATACTCTAAAATAATAG
1 CCTTTGTGGCGTACTCTGAAAGAATAG
* *
47323113 CATTTGTGGCGAACTC-GAAAAGAATAG
1 CCTTTGTGGCGTACTCTG-AAAGAATAG
47323140 CCTTTGT
1 CCTTTGT
47323147 TGCATGTTCT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (27 bp):
CCTTTGTGGCGTACTCTGAAAGAATAG
Found at i:47330006 original size:39 final size:39
Alignment explanation
Indices: 47329879--47330008 Score: 170
Period size: 39 Copynumber: 3.3 Consensus size: 39
47329869 GTATTACGAT
* *
47329879 ATATATGCTTGAATATTATGTGAATATATGAGTATTGTG
1 ATATATGCTTAAATATTATGTGATTATATGAGTATTGTG
* * *
47329918 ATATATGCTTGAACATTATGTAATTATATGAGTATTGTG
1 ATATATGCTTAAATATTATGTGATTATATGAGTATTGTG
* * * * *
47329957 ATATATGCTTAAATGTTATATGATTATATGTGTAATGCG
1 ATATATGCTTAAATATTATGTGATTATATGAGTATTGTG
47329996 ATATATGCTTAAA
1 ATATATGCTTAAA
47330009 AGTGAATATT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.35, C:0.05, G:0.18, T:0.43
Consensus pattern (39 bp):
ATATATGCTTAAATATTATGTGATTATATGAGTATTGTG
Found at i:47335698 original size:11 final size:10
Alignment explanation
Indices: 47335667--47335714 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
47335657 TAACATGTTG
*
47335667 AATTTTAATT
1 AATTTTTATT
47335677 AATTTTATATT
1 AATTTT-TATT
47335688 AAATTTTTATT
1 -AATTTTTATT
*
47335699 AATTTTGATT
1 AATTTTTATT
*
47335709 TATTTT
1 AATTTT
47335715 CAACAGATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 20 0.61
11 7 0.21
12 6 0.18
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
AATTTTTATT
Found at i:47340218 original size:14 final size:14
Alignment explanation
Indices: 47340199--47340227 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47340189 TAAAACCGAC
47340199 TCTCAAGGAGAAGG
1 TCTCAAGGAGAAGG
47340213 TCTCAAGGAGAAGG
1 TCTCAAGGAGAAGG
47340227 T
1 T
47340228 TTATGGTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.34, T:0.17
Consensus pattern (14 bp):
TCTCAAGGAGAAGG
Found at i:47343113 original size:16 final size:17
Alignment explanation
Indices: 47343076--47343124 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
47343066 TTGCTTTATG
*
47343076 TAATTAATGCAAAATAA
1 TAATTAATTCAAAATAA
*
47343093 -CATT-ATTCAAAATAA
1 TAATTAATTCAAAATAA
47343108 TAATTAATT-AAAATAA
1 TAATTAATTCAAAATAA
47343124 T
1 T
47343125 GAACTCTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
15 10 0.37
16 14 0.52
17 3 0.11
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (17 bp):
TAATTAATTCAAAATAA
Found at i:47353517 original size:18 final size:18
Alignment explanation
Indices: 47353469--47353523 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
47353459 AATTTTTGAA
*
47353469 AAATATAAAAAAATTAAT
1 AAATATATAAAAATTAAT
*
47353487 GGAAAT-CAT-AAAATTAAT
1 --AAATATATAAAAATTAAT
*
47353505 AAATATATAAAAATAAAT
1 AAATATATAAAAATTAAT
47353523 A
1 A
47353524 TATTTTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
16 4 0.14
17 2 0.07
18 18 0.62
19 1 0.03
20 4 0.14
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (18 bp):
AAATATATAAAAATTAAT
Found at i:47353711 original size:9 final size:9
Alignment explanation
Indices: 47353558--47353712 Score: 63
Period size: 9 Copynumber: 16.8 Consensus size: 9
47353548 TAAAAGTGAT
47353558 TAAAAATTGA
1 TAAAAATT-A
*
47353568 TAAATAATTG
1 TAAA-AATTA
47353578 TACAAAATGTA
1 TA-AAAAT-TA
47353589 TAAAAAATTACA
1 T-AAAAATT--A
*
47353601 TAAAAGTTA
1 TAAAAATTA
47353610 TAGAAAATT-
1 TA-AAAATTA
*
47353619 TTAAAA-TA
1 TAAAAATTA
*
47353627 CAAAAA--A
1 TAAAAATTA
*
47353634 T--AAATAA
1 TAAAAATTA
* *
47353641 TAAATATTG
1 TAAAAATTA
47353650 TAAATAATTA
1 TAAA-AATTA
47353660 T-AAAATTA
1 TAAAAATTA
* *
47353668 TAAACATTT
1 TAAAAATTA
47353677 TGGAAAAATTA
1 T--AAAAATTA
*
47353688 TGAAAATTA
1 TAAAAATTA
*
47353697 AAAAAATTA
1 TAAAAATTA
47353706 TAAAAAT
1 TAAAAAT
47353713 ATTCTTTTTC
Statistics
Matches: 108, Mismatches: 21, Indels: 33
0.67 0.13 0.20
Matches are distributed among these distances:
5 3 0.03
7 4 0.04
8 14 0.13
9 39 0.36
10 19 0.18
11 26 0.24
12 3 0.03
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:47358708 original size:45 final size:45
Alignment explanation
Indices: 47358657--47358745 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
47358647 GGAAAGTCTA
* *
47358657 CTTAGTACATTTGTCTATGGTGAAAGGGAAGTAGAGAACCTTGGC
1 CTTAGTACATTTGTCCATGGTGAAAGGGAAGTACAGAACCTTGGC
47358702 CTTAGTACATTTGTCCATGGTGAAAGGGAAGTACAGAACCTTGG
1 CTTAGTACATTTGTCCATGGTGAAAGGGAAGTACAGAACCTTGG
47358746 TCACTTTGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (45 bp):
CTTAGTACATTTGTCCATGGTGAAAGGGAAGTACAGAACCTTGGC
Done.