Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 158 of 213
Found at i:47371866 original size:29 final size:28
Alignment explanation
Indices: 47371824--47371879 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
47371814 ACTATACTTG
*
47371824 TTTTCTTAAATTGGTACTTAAAATATTT
1 TTTTCTTAAATTGGTACCTAAAATATTT
* *
47371852 TTTTGTTAGAATTGGTACCTAAATTATT
1 TTTTCTTA-AATTGGTACCTAAAATATT
47371880 AAATCGTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (28 bp):
TTTTCTTAAATTGGTACCTAAAATATTT
Found at i:47372632 original size:26 final size:25
Alignment explanation
Indices: 47372592--47372640 Score: 89
Period size: 26 Copynumber: 1.9 Consensus size: 25
47372582 TGAAAAAAGA
47372592 AGAAGAGTGGAAGCTTGAAGATGGT
1 AGAAGAGTGGAAGCTTGAAGATGGT
47372617 AGAAGCAGTGGAAGCTTGAAGATG
1 AGAAG-AGTGGAAGCTTGAAGATG
47372641 ATAAAATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.37, C:0.06, G:0.39, T:0.18
Consensus pattern (25 bp):
AGAAGAGTGGAAGCTTGAAGATGGT
Found at i:47373278 original size:20 final size:21
Alignment explanation
Indices: 47373248--47373302 Score: 69
Period size: 19 Copynumber: 2.7 Consensus size: 21
47373238 ATATACTTTT
* *
47373248 TATACTTTTTTTTAACAATT-
1 TATAATTTTTTTTAAAAATTA
*
47373268 TTTAA-TTTTTTTAAAAATTA
1 TATAATTTTTTTTAAAAATTA
47373288 TATAATTTTTTTTAA
1 TATAATTTTTTTTAA
47373303 TTTTTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 13 0.45
20 7 0.24
21 9 0.31
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (21 bp):
TATAATTTTTTTTAAAAATTA
Found at i:47373308 original size:38 final size:39
Alignment explanation
Indices: 47373248--47373324 Score: 95
Period size: 37 Copynumber: 2.0 Consensus size: 39
47373238 ATATACTTTT
* * *
47373248 TATACTTTTTTTTAACAATTTTTAATTTTTTTAAAAATTA
1 TATAATTTTTTTTAACAATTTTTAA-ATTTTAAAAAATTA
*
47373288 TATAATTTTTTTT-A-ATTTTTTAAATTTTAAAAAATTA
1 TATAATTTTTTTTAACAATTTTTAAATTTTAAAAAATTA
47373325 ATTAAGCACC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 12 0.36
38 8 0.24
39 1 0.03
40 12 0.36
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (39 bp):
TATAATTTTTTTTAACAATTTTTAAATTTTAAAAAATTA
Found at i:47373323 original size:29 final size:30
Alignment explanation
Indices: 47373266--47373323 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
47373256 TTTTTAACAA
* *
47373266 TTTTTAATTTTTTTAAAAATTATATAATTT
1 TTTTTAATTTTTTTAAAAATTAAAAAATTT
**
47373296 TTTTTAA-TTTTTTAAATTTTAAAAAATT
1 TTTTTAATTTTTTTAAAAATTAAAAAATT
47373324 AATTAAGCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTTAATTTTTTTAAAAATTAAAAAATTT
Found at i:47373532 original size:6 final size:6
Alignment explanation
Indices: 47373521--47373561 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
47373511 TAGTAGAATG
47373521 CACATA CACATA CACATA CACATA CACATA CACATA CACAT
1 CACATA CACATA CACATA CACATA CACATA CACATA CACAT
47373562 GAGAGTAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (6 bp):
CACATA
Found at i:47375089 original size:3 final size:3
Alignment explanation
Indices: 47375081--47375120 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
47375071 CCACCTGTAC
*
47375081 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
47375121 ACCAAATTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:47390578 original size:50 final size:50
Alignment explanation
Indices: 47390461--47390757 Score: 290
Period size: 50 Copynumber: 5.8 Consensus size: 50
47390451 AATAATAACA
* * ** * * * **
47390461 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATATTTCTTGT-AT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * **
47390510 TGCCAATGCCATATCCCAGATATTGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* ** * *
47390560 TGCCCACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
47390610 TGCCAACGCCATGTCCTAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
47390660 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
47390716 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
47390758 TTATCCAAAT
Statistics
Matches: 206, Mismatches: 35, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
49 37 0.18
50 127 0.62
53 2 0.01
56 40 0.19
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:47390653 original size:100 final size:102
Alignment explanation
Indices: 47390461--47390757 Score: 325
Period size: 100 Copynumber: 2.9 Consensus size: 102
47390451 AATAATAACA
* * * ** * * * *
47390461 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGAGATATTTC-TTGTAT--TGCCAATGCCATA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTATGATGCCAATGCCATG
* **
47390523 TCCCAGATATTGTCTTACATGGGAGTTCTCATATCGG
66 TCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* * * *
47390560 TGCCCACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTC-ATCT-TGGTGCCAACGCCATG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTATGATGCCAATGCCATG
* * * *
47390623 TCCTAGACATGGTCTTACATGAGACCTCTCATCTCGG
66 TCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* *
47390660 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC--AATCT--ATGATGCCAATGC
47390725 CATGTCCCAGATATGGTCTTACATGGGACCTCT
62 CATGTCCCAGATATGGTCTTACATGGGACCTCT
47390758 TTATCCAAAT
Statistics
Matches: 162, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
98 1 0.01
99 37 0.23
100 80 0.49
103 4 0.02
106 40 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (102 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCAATCTATGATGCCAATGCCATG
TCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
Found at i:47391768 original size:27 final size:27
Alignment explanation
Indices: 47391708--47391762 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
47391698 ATGGTCTAAT
*
47391708 TACCATATAAGGACCTCCAATTTGAAG
1 TACCATATAAGGACCTCCAATTTAAAG
47391735 TACCATATAAGGACCTCCAATTTAAAG
1 TACCATATAAGGACCTCCAATTTAAAG
47391762 T
1 T
47391763 TTCATAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (27 bp):
TACCATATAAGGACCTCCAATTTAAAG
Found at i:47403500 original size:20 final size:19
Alignment explanation
Indices: 47403477--47403541 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
47403467 AAGCTCAAAC
47403477 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
47403497 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
47403517 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
47403537 GAGCT
1 GAGCT
47403542 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:47412372 original size:12 final size:13
Alignment explanation
Indices: 47412347--47412376 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
47412337 TGAGCTATAA
47412347 TTATTGCATTTAT
1 TTATTGCATTTAT
47412360 TTATTGC-TTTAT
1 TTATTGCATTTAT
47412372 TTATT
1 TTATT
47412377 CATGTATGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (13 bp):
TTATTGCATTTAT
Found at i:47418604 original size:20 final size:20
Alignment explanation
Indices: 47418579--47418618 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
47418569 AATATTTTCT
*
47418579 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
47418599 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
47418619 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:47418621 original size:34 final size:35
Alignment explanation
Indices: 47418567--47418633 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
47418557 CAAACAGCAG
* *
47418567 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
47418602 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
47418634 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:47418625 original size:14 final size:14
Alignment explanation
Indices: 47418602--47418641 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
47418592 ACAGAAAAGT
*
47418602 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
47418616 AAATCATTTTACGG
1 AAAACATTTTACAG
47418630 AAAACATTTTAC
1 AAAACATTTTAC
47418642 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:47419766 original size:16 final size:15
Alignment explanation
Indices: 47419741--47419770 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
47419731 GGTTTACACT
47419741 AGATACAATTTTAAA
1 AGATACAATTTTAAA
47419756 AGATAACAATTTTAA
1 AGAT-ACAATTTTAA
47419771 GGCAGTGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (15 bp):
AGATACAATTTTAAA
Found at i:47440544 original size:39 final size:40
Alignment explanation
Indices: 47440443--47440627 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
47440433 TTGAATGATG
* * * *
47440443 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
47440482 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
47440523 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47440562 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
47440601 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
47440628 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:47440579 original size:79 final size:81
Alignment explanation
Indices: 47440443--47440627 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
47440433 TTGAATGATG
* * *
47440443 TCCGGGCTAAGTCCCGAAGGC-CTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
47440507 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
47440522 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
47440584 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
47440602 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47440628 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:47440649 original size:79 final size:79
Alignment explanation
Indices: 47440496--47440660 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
47440486 GGACTAAGAT
* * **
47440496 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
47440561 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
47440575 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
47440638 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
47440654 CCGAAGG
1 CCGAAGG
47440661 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:47442273 original size:6 final size:6
Alignment explanation
Indices: 47442262--47442286 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
47442252 GCGTACCAAT
47442262 CAAAAC CAAAAC CAAAAC CAAAAC C
1 CAAAAC CAAAAC CAAAAC CAAAAC C
47442287 GATCATTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAC
Found at i:47448415 original size:20 final size:20
Alignment explanation
Indices: 47448343--47448437 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 20
47448333 GCCTCTATTA
*
47448343 TGCACTTCGGTGCCTCTG-T
1 TGCACTTTGGTGCCTCTGCT
* * * * *
47448362 TACACTTTGATGTCTTTGAT
1 TGCACTTTGGTGCCTCTGCT
***
47448382 TCGCACTACCGTGCCTCTGCT
1 T-GCACTTTGGTGCCTCTGCT
*
47448403 TGCACATTT-GTGCCTCTGTT
1 TGCAC-TTTGGTGCCTCTGCT
47448423 TGCACTTTGGTGCCT
1 TGCACTTTGGTGCCT
47448438 TTTTATTGCA
Statistics
Matches: 56, Mismatches: 16, Indels: 7
0.71 0.20 0.09
Matches are distributed among these distances:
19 16 0.29
20 27 0.48
21 13 0.23
ACGTcount: A:0.11, C:0.28, G:0.21, T:0.40
Consensus pattern (20 bp):
TGCACTTTGGTGCCTCTGCT
Found at i:47448436 original size:40 final size:38
Alignment explanation
Indices: 47448331--47448437 Score: 97
Period size: 40 Copynumber: 2.7 Consensus size: 38
47448321 TTGTAATTCG
*
47448331 GTGCCTCTATTATGCACTTCGGTGCCTCTGTTACACTTT
1 GTGCCTCTGTT-TGCACTTCGGTGCCTCTGTTACACTTT
* * * * * *
47448370 GATGTCTTTGATTCGCACTACCGTGCCTCTGCTTGCACATTT
1 G-TGCCTCTG-TTTGCACTTCGGTGCCTCTG-TTACAC-TTT
*
47448412 GTGCCTCTGTTTGCACTTTGGTGCCT
1 GTGCCTCTGTTTGCACTTCGGTGCCT
47448438 TTTTATTGCA
Statistics
Matches: 51, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
39 1 0.02
40 33 0.65
41 13 0.25
42 4 0.08
ACGTcount: A:0.11, C:0.28, G:0.21, T:0.40
Consensus pattern (38 bp):
GTGCCTCTGTTTGCACTTCGGTGCCTCTGTTACACTTT
Found at i:47450052 original size:23 final size:23
Alignment explanation
Indices: 47450001--47450052 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
47449991 CCTACTTTCT
*
47450001 TACT-GTAATTTTTGGGGTATTA
1 TACTAGTAATTTTTGGGATATTA
* *
47450023 CAGTAGTAATTTTTGGGATATTA
1 TACTAGTAATTTTTGGGATATTA
47450046 TACTAGT
1 TACTAGT
47450053 GTTTGGGATA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.46
Consensus pattern (23 bp):
TACTAGTAATTTTTGGGATATTA
Found at i:47452884 original size:15 final size:16
Alignment explanation
Indices: 47452857--47452886 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
47452847 AAAAATAATT
47452857 AATATATATTATATAA
1 AATATATATTATATAA
47452873 AATATA-ATTATATA
1 AATATATATTATATA
47452887 TTAGTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:47460744 original size:20 final size:19
Alignment explanation
Indices: 47460707--47460817 Score: 87
Period size: 20 Copynumber: 5.6 Consensus size: 19
47460697 TAGGACACCA
* *
47460707 AAGTGCAATCAAGAGCACG
1 AAGTGCAATCAGGGGCACG
*
47460726 AATGTGCAATCAGGGGCACCA
1 AA-GTGCAATCAGGGGCA-CG
* *
47460747 AAGTGCAAACAGGGGCGCG
1 AAGTGCAATCAGGGGCACG
* *
47460766 TAAGTGCAATCAAGGGTACCG
1 -AAGTGCAATCAGGGGCA-CG
* * *
47460787 AAGTACAAACAGGGGCATG
1 AAGTGCAATCAGGGGCACG
47460806 TAAGTGCAATCA
1 -AAGTGCAATCA
47460818 TTGAATAATT
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
19 4 0.06
20 61 0.87
21 5 0.07
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.14
Consensus pattern (19 bp):
AAGTGCAATCAGGGGCACG
Found at i:47460773 original size:40 final size:40
Alignment explanation
Indices: 47460702--47460817 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
47460692 CATAATAGGA
* * * *
47460702 CACCAAAGTGCAATCAAGAGCACG-AATGTGCAATCAGGGG
1 CACCAAAGTGCAAACAGGGGCACGTAA-GTGCAATCAAGGG
*
47460742 CACCAAAGTGCAAACAGGGGCGCGTAAGTGCAATCAAGGG
1 CACCAAAGTGCAAACAGGGGCACGTAAGTGCAATCAAGGG
* * * *
47460782 TACCGAAGTACAAACAGGGGCATGTAAGTGCAATCA
1 CACCAAAGTGCAAACAGGGGCACGTAAGTGCAATCA
47460818 TTGAATAATT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
40 63 0.97
41 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (40 bp):
CACCAAAGTGCAAACAGGGGCACGTAAGTGCAATCAAGGG
Found at i:47464306 original size:25 final size:25
Alignment explanation
Indices: 47464272--47464335 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
47464262 ATTTTTATAA
47464272 CTCGTGTGAGCATA-TCGATTCACAG
1 CTCGTGTGAGCATACT-GATTCACAG
*
47464297 CTCGTGTGAGCATACTGATTCATAG
1 CTCGTGTGAGCATACTGATTCACAG
* *
47464322 CTTGTATGAGCATA
1 CTCGTGTGAGCATA
47464336 AATGTACATC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (25 bp):
CTCGTGTGAGCATACTGATTCACAG
Found at i:47467258 original size:40 final size:40
Alignment explanation
Indices: 47467077--47467244 Score: 221
Period size: 40 Copynumber: 4.2 Consensus size: 40
47467067 CTCGTTCAAG
* * * * *
47467077 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* *
47467116 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
47467156 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * * *
47467196 TGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
*
47467236 GGCCTTCGG
1 TGCCTTCGG
47467245 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 32 0.28
40 83 0.72
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:47467285 original size:80 final size:79
Alignment explanation
Indices: 47467078--47467297 Score: 201
Period size: 80 Copynumber: 2.8 Consensus size: 79
47467068 TCGTTCAAGT
* * * * * *
47467078 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGGATTTA
* *
47467142 ACAACTCGCACGAAT
65 ACAACTCGCACAAAG
* * *
47467157 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCCTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGGATTTA
** *
47467222 GTATCTCGCACAAAG
65 ACAACTCGCACAAAG
** * ** * *
47467237 GCCTTC-GGATCTTAGTCCGGATATATTCGCTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCGGA
47467298 CAGCATTCAA
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
79 33 0.29
80 77 0.67
81 5 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGATTTAA
CAACTCGCACAAAG
Found at i:47470033 original size:17 final size:19
Alignment explanation
Indices: 47469995--47470042 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
47469985 TCTTCTTGCG
*
47469995 TTTTTCTTA-TTTACTTTC
1 TTTTTTTTATTTTACTTTC
47470013 TTTTTTTTATTTTA-TTT-
1 TTTTTTTTATTTTACTTTC
*
47470030 TTTTGTTTATTTT
1 TTTTTTTTATTTT
47470043 CTACAACTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 12 0.44
18 11 0.41
19 4 0.15
ACGTcount: A:0.10, C:0.06, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTTTTTATTTTACTTTC
Found at i:47472790 original size:27 final size:26
Alignment explanation
Indices: 47472736--47472792 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
47472726 TAAAATGGTA
* * *
47472736 ATTTTACCCCCGGGGGTATTTTGGTC
1 ATTTTACCCCCGAGGGTATTTCGATC
*
47472762 ATTTTACCCTTCGAGGGTATTTCGATC
1 ATTTTACCC-CCGAGGGTATTTCGATC
47472789 ATTT
1 ATTT
47472793 AACCATCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCCGAGGGTATTTCGATC
Found at i:47475433 original size:15 final size:15
Alignment explanation
Indices: 47475405--47475452 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
47475395 AGGGAGAAAG
47475405 AGAAAAGAATGTGTGA
1 AGAAAAG-ATGTGTGA
47475421 AGAAAAGATGTGTGA
1 AGAAAAGATGTGTGA
47475436 A-AGAAAGATGTGTGA
1 AGA-AAAGATGTGTGA
47475451 AG
1 AG
47475453 TGAGGGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.03
15 22 0.73
16 7 0.23
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.19
Consensus pattern (15 bp):
AGAAAAGATGTGTGA
Found at i:47475747 original size:131 final size:131
Alignment explanation
Indices: 47475508--47475766 Score: 419
Period size: 131 Copynumber: 2.0 Consensus size: 131
47475498 AGATGGCTAC
* * * *
47475508 TAAATTTAGCTAAAAATAGCAGCCAATCCCCCTTGTAATGGCTAGTCATGCTACGTTGAAGGTTT
1 TAAAATTAGCAAAAAATAGCAGCCAATCCCCCTTCTAATGGCTAGTCATGCTACGTGGAAGGTTT
*
47475573 GATTAATTCAAACTTGATATTTTTTACTTATGGATAAAAATAGAGGGCATGAAAAGAGAAGGGTG
66 GATTAATTCAAACTTGATATTTTTTACTTATGGATAAAAATAGAAGGCATGAAAAGAGAAGGGTG
47475638 A
131 A
* * *
47475639 TAAAATTAGCAAAAAATAGCAGCCAATGCCCCTTCTCATGGCTTGTCATGCTACGTGGAAGGTTT
1 TAAAATTAGCAAAAAATAGCAGCCAATCCCCCTTCTAATGGCTAGTCATGCTACGTGGAAGGTTT
* * *
47475704 GATTGATTCAAACTTGCTATTTTTTTCTTATGGATAAAAATAGAAGGCATGAAAAGAGAAGGG
66 GATTAATTCAAACTTGATATTTTTTACTTATGGATAAAAATAGAAGGCATGAAAAGAGAAGGG
47475767 GTTTGAATGG
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 117 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.30
Consensus pattern (131 bp):
TAAAATTAGCAAAAAATAGCAGCCAATCCCCCTTCTAATGGCTAGTCATGCTACGTGGAAGGTTT
GATTAATTCAAACTTGATATTTTTTACTTATGGATAAAAATAGAAGGCATGAAAAGAGAAGGGTG
A
Found at i:47477554 original size:32 final size:31
Alignment explanation
Indices: 47477501--47477766 Score: 266
Period size: 32 Copynumber: 8.4 Consensus size: 31
47477491 CAGAATGGCT
* * *
47477501 ACAAGCCATAAGT-ACAGTAATATGATTGGC
1 ACAAGCCATCAGTAATAGTAATATGATCGGC
*
47477531 ACGAAGCCATCAGTAGTAGTAATATGATCGGC
1 AC-AAGCCATCAGTAATAGTAATATGATCGGC
* * *
47477563 ACATAGCCTTCGGTAATAGTAGTATGATCGGC
1 ACA-AGCCATCAGTAATAGTAATATGATCGGC
* *
47477595 ACAAAGCCATCAGTAGTAGTAATATGATCGAC
1 AC-AAGCCATCAGTAATAGTAATATGATCGGC
* *
47477627 ACACAGCCATCAGTAATGGTAGTATGATCGGC
1 ACA-AGCCATCAGTAATAGTAATATGATCGGC
* * *
47477659 ATGC-AGCCATTAGTAATGGTAATATGATCAGC
1 A--CAAGCCATCAGTAATAGTAATATGATCGGC
* * *
47477691 ACACAGCCATTAGTAATGGTAATATGATCGAC
1 ACA-AGCCATCAGTAATAGTAATATGATCGGC
* *
47477723 ACACAGCCATCAGTAGTCGTAATATGATCGGC
1 ACA-AGCCATCAGTAATAGTAATATGATCGGC
47477755 ACAAAGCCATCA
1 AC-AAGCCATCA
47477767 ATAGCATTGC
Statistics
Matches: 200, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
30 3 0.01
31 12 0.06
32 182 0.91
33 2 0.01
34 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (31 bp):
ACAAGCCATCAGTAATAGTAATATGATCGGC
Found at i:47477763 original size:64 final size:64
Alignment explanation
Indices: 47477517--47477764 Score: 302
Period size: 64 Copynumber: 3.9 Consensus size: 64
47477507 CATAAGTACA
* * *
47477517 GTAATATGATTGGCACGA-AGCCATCAGTAGTAGTAATATGATCGGCACATAGCC-TTCGGTAAT
1 GTAATATGATCGGCAC-ACAGCCATCAGTAGTAGTAATATGATCGGCACACAGCCATT-AGTAAT
*
47477580 A
64 G
* * * *
47477581 GTAGTATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAATG
1 GTAATATGATCGGCACACAGCCATCAGTAGTAGTAATATGATCGGCACACAGCCATTAGTAATG
* ** * * * *
47477645 GTAGTATGATCGGCATGCAGCCATTAGTAATGGTAATATGATCAGCACACAGCCATTAGTAATG
1 GTAATATGATCGGCACACAGCCATCAGTAGTAGTAATATGATCGGCACACAGCCATTAGTAATG
* * *
47477709 GTAATATGATCGACACACAGCCATCAGTAGTCGTAATATGATCGGCACAAAGCCAT
1 GTAATATGATCGGCACACAGCCATCAGTAGTAGTAATATGATCGGCACACAGCCAT
47477765 CAATAGCATT
Statistics
Matches: 157, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
63 1 0.01
64 155 0.99
65 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (64 bp):
GTAATATGATCGGCACACAGCCATCAGTAGTAGTAATATGATCGGCACACAGCCATTAGTAATG
Found at i:47477763 original size:96 final size:97
Alignment explanation
Indices: 47477503--47477764 Score: 307
Period size: 96 Copynumber: 2.7 Consensus size: 97
47477493 GAATGGCTAC
* * * *
47477503 AAGCCATAAGT-ACAGTAATATGATTGGCACGA-AGCCATCAGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGACAC-ACAGCCATCAGTAGTAGTAATATGATCGGCACA
* * * *
47477566 TAGCC-TTCGGTAATAGTAGTATGATCGGCACA
65 AAGCCATTCAGTAATAGTAATATGATCAGCACA
* * * * ***
47477598 AAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAATGGTAGTATGATCGGCATGC
1 AAGCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAGTAGTAATATGATCGGCACAA
*
47477663 AGCCATT-AGTAATGGTAATATGATCAGCACA
66 AGCCATTCAGTAATAGTAATATGATCAGCACA
* * * *
47477694 CAGCCATTAGTAATGGTAATATGATCGACACACAGCCATCAGTAGTCGTAATATGATCGGCACAA
1 AAGCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAGTAGTAATATGATCGGCACAA
47477759 AGCCAT
66 AGCCAT
47477765 CAATAGCATT
Statistics
Matches: 139, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
95 11 0.08
96 126 0.91
97 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (97 bp):
AAGCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAGTAGTAATATGATCGGCACAA
AGCCATTCAGTAATAGTAATATGATCAGCACA
Found at i:47477824 original size:26 final size:26
Alignment explanation
Indices: 47477760--47477825 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
47477750 TCGGCACAAA
* * *
47477760 GCCATCAATAGCATTGCAGCAAAGCT
1 GCCAGCAATAGTATCGCAGCAAAGCT
*
47477786 GCCAGCAACAGTATCGCAGCAAAGCT
1 GCCAGCAATAGTATCGCAGCAAAGCT
* *
47477812 GCTAGTAATAGTAT
1 GCCAGCAATAGTAT
47477826 ATGTAGCCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (26 bp):
GCCAGCAATAGTATCGCAGCAAAGCT
Found at i:47477845 original size:27 final size:27
Alignment explanation
Indices: 47477815--47477872 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
47477805 CAAAGCTGCT
47477815 AGTAATAGT-ATATGTAGCCA-AGCCACC
1 AGTAATAGTGAT-TGT-GCCAGAGCCACC
*
47477842 AGTAATAGTGATTGTGGCAGAGCCACC
1 AGTAATAGTGATTGTGCCAGAGCCACC
47477869 AGTA
1 AGTA
47477873 CAATACTTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 3 0.11
27 23 0.82
28 2 0.07
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
AGTAATAGTGATTGTGCCAGAGCCACC
Found at i:47478009 original size:28 final size:24
Alignment explanation
Indices: 47477951--47478030 Score: 124
Period size: 24 Copynumber: 3.3 Consensus size: 24
47477941 AATCAGTCAT
*
47477951 ACAAATCAGTCATTTAAACCACAG
1 ACAAATCAATCATTTAAACCACAG
*
47477975 ACAAATCAATCATTTAAACCACAT
1 ACAAATCAATCATTTAAACCACAG
* *
47477999 ACAAATCAATCATTTAAATCACAA
1 ACAAATCAATCATTTAAACCACAG
47478023 ACAAATCA
1 ACAAATCA
47478031 GTTATCTACA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.51, C:0.24, G:0.03, T:0.23
Consensus pattern (24 bp):
ACAAATCAATCATTTAAACCACAG
Found at i:47478136 original size:27 final size:27
Alignment explanation
Indices: 47478106--47478440 Score: 339
Period size: 27 Copynumber: 12.4 Consensus size: 27
47478096 AGCAAAAATA
*
47478106 GTCATTTTACCCTACAGGGGCATCACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
47478133 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * *
47478160 ATAATTTTACCTTATAGGGGCGTTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
47478187 ATCATTTTACCCTATAGGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
*
47478214 GTAATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
47478241 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
47478268 GTCATTTTACCCTACAAGGTCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * **
47478295 GTTATTTTATCCTACAGGGGCGTTATA
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
47478322 GTCATTTTATCCTACAAGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
47478349 ATCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* * * **
47478376 ATCATTTTACCC-ATAGAGGGTATTTTG
1 GTCATTTTACCCTACAG-GGGCATTACG
* * * * *
47478403 GTAATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTACAGGGGCATTACG
*
47478430 ATCATTTTACC
1 GTCATTTTACC
47478441 ATTTAAGGGT
Statistics
Matches: 258, Mismatches: 48, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 254 0.98
28 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:47478434 original size:81 final size:81
Alignment explanation
Indices: 47478349--47478523 Score: 217
Period size: 81 Copynumber: 2.2 Consensus size: 81
47478339 GGGCATTACA
* * *
47478349 ATCATTTTACCCTACAGGGGCATTAC-AATCATTTTACCCATAGAGGGTATTTTGGTAATTTTAC
1 ATCATTTTACCCTACAAGGGCATT-CTAATAATTTTACCCATAGAGGGTATTTAGGTAATTTTAC
*
47478413 CCTTCGGGGGTATTTCG
65 CCTTCGGGGGTATTTAG
* ** * * ** *
47478430 ATCATTTTACCATTTAAGGGTATTCTAGTAATTTTACCTTTCGAGGGTATTTAGGTAATTTTACC
1 ATCATTTTACCCTACAAGGGCATTCTAATAATTTTACCCATAGAGGGTATTTAGGTAATTTTACC
47478495 CTTCGGGGGTATTTAG
66 CTTCGGGGGTATTTAG
*
47478511 ATAATTTTACCCT
1 ATCATTTTACCCT
47478524 TCGAGGGTAT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 78 0.99
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (81 bp):
ATCATTTTACCCTACAAGGGCATTCTAATAATTTTACCCATAGAGGGTATTTAGGTAATTTTACC
CTTCGGGGGTATTTAG
Found at i:47478531 original size:81 final size:81
Alignment explanation
Indices: 47478391--47478543 Score: 234
Period size: 81 Copynumber: 1.9 Consensus size: 81
47478381 TTTACCCATA
* * * *
47478391 GAGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTCGATCATTTTACCATTTAAGGGTATTCT
1 GAGGGTATTTAGGTAATTTTACCCTTCGGGGGTATTTAGATAATTTTACCATTCAAGGGTATTCT
47478456 AGTAATTTTACCTTTC
66 AGTAATTTTACCTTTC
* * *
47478472 GAGGGTATTTAGGTAATTTTACCCTTCGGGGGTATTTAGATAATTTTACCCTTCGAGGGTATTTT
1 GAGGGTATTTAGGTAATTTTACCCTTCGGGGGTATTTAGATAATTTTACCATTCAAGGGTATTCT
*
47478537 GGTAATT
66 AGTAATT
47478544 ACAACCTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (81 bp):
GAGGGTATTTAGGTAATTTTACCCTTCGGGGGTATTTAGATAATTTTACCATTCAAGGGTATTCT
AGTAATTTTACCTTTC
Found at i:47478551 original size:27 final size:27
Alignment explanation
Indices: 47478379--47478543 Score: 188
Period size: 27 Copynumber: 6.1 Consensus size: 27
47478369 CATTACAATC
* * *
47478379 ATTTTACCCATAGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTAGGTA
* * * *
47478406 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTTAGGTA
* **
47478433 ATTTTACCATTTAAGGGTATTCTA-GTA
1 ATTTTACCCTTCGAGGGTATT-TAGGTA
*
47478460 ATTTTACCTTTCGAGGGTATTTAGGTA
1 ATTTTACCCTTCGAGGGTATTTAGGTA
* *
47478487 ATTTTACCCTTCGGGGGTATTTAGATA
1 ATTTTACCCTTCGAGGGTATTTAGGTA
*
47478514 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTAGGTA
47478541 ATT
1 ATT
47478544 ACAACCTTTT
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 111 0.97
28 1 0.01
ACGTcount: A:0.22, C:0.14, G:0.21, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTAGGTA
Found at i:47481672 original size:51 final size:50
Alignment explanation
Indices: 47481542--47481780 Score: 257
Period size: 51 Copynumber: 4.7 Consensus size: 50
47481532 AAAGTGATGG
*** *
47481542 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-ATGAAAGG
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATA-GTTTGA
* * * * * *
47481592 TCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAG-TTTGA
* *
47481643 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATA-TTAATGG
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGTT--TGA
* * * * *
47481694 TCATGTGTGTAGTACTATATGCAGGCTACTACGTGAACCGGAAAGTTTGA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGTTTGA
* *
47481744 TCATGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTA
47481781 TCGAATGATA
Statistics
Matches: 157, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 2 0.01
50 74 0.47
51 79 0.50
52 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGATAGTTTGA
Found at i:47481746 original size:101 final size:101
Alignment explanation
Indices: 47481542--47481788 Score: 327
Period size: 101 Copynumber: 2.5 Consensus size: 101
47481532 AAAGTGATGG
* *
47481542 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
* * * * *
47481607 TATGTGTAGGCTACTATGCGTACCAGATAGCTTCGA
66 TATATGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * **
47481643 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGATATTAATGGTCATGTGTGTAGTA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGA-ATGAAAGGTCACATGTGTAGTA
* * *
47481708 CTATATGCAGGCTACTACGTGAACCGGAAAG-TTTGA
65 CTATATGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* *
47481744 TCATGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAATGA
47481789 TAATAGTTAA
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
99 3 0.02
100 2 0.02
101 82 0.64
102 41 0.32
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAATGAAAGGTCACATGTGTAGTAC
TATATGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:47481810 original size:101 final size:102
Alignment explanation
Indices: 47481542--47481817 Score: 326
Period size: 101 Copynumber: 2.7 Consensus size: 102
47481532 AAAGTGATGG
* **
47481542 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGA-AA-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATC-GAATGATAATGGTCAAATGTGTAGT
* * * *
47481605 ACTATGTGTAGGCTACTATGCGTACCAGATAGCTTCGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* **
47481643 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGGAT-ATTAATGGTCATGTGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGA-TAATGGTCAAATGTGTAGT
* * * *
47481707 ACTATATGCAGGCTACTACGTGAACCGGAAAG-TTTGA
65 ACTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
* * * * * *
47481744 TCATGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGATAATGGTCAAATGTGTAGTA
47481809 CTATGTGCA
66 CTATGTGCA
47481818 AACGACTGAA
Statistics
Matches: 148, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
99 1 0.01
100 3 0.02
101 106 0.72
102 38 0.26
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCGAATGATAATGGTCAAATGTGTAGTA
CTATGTGCAGGCTACTACGCGAACCAGAAAGCTTCGA
Found at i:47487851 original size:40 final size:41
Alignment explanation
Indices: 47487701--47487854 Score: 238
Period size: 41 Copynumber: 3.8 Consensus size: 41
47487691 AATATTGTTG
* *
47487701 AATTACACATACGTGCCCCTGTTTGTACTTCGGTACCCTTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTA
* * *
47487742 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACTCTTA
1 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTA
*
47487783 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCATA
1 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTA
*
47487824 AATTGCA-ATACATGCCCCTGTTTGTACTTCG
1 AATTGCACATACGTGCCCCTGTTTGTACTTCG
47487855 ATGCCCCTGA
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 23 0.22
41 80 0.78
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.35
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCTTA
Found at i:47491662 original size:138 final size:138
Alignment explanation
Indices: 47491341--47491900 Score: 824
Period size: 138 Copynumber: 4.1 Consensus size: 138
47491331 TAGAAAAAGG
* ** * **
47491341 AATTATATTCTTTCGAAAAGAATATTAATTTCCATGTCTTTTATGCTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATAATTTGACCAAAATTAATTAA
* *
47491406 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATA-TTT-T-TGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47491468 CAAATATATATT
131 C----ATATATT
*
47491480 AATTATATTC-TTCCTAAAAGAATATTAATTTTCATGTCTTTTATAATTTGACCAAAATTAATTA
1 AATTATATTCTTTCC-AAAAGAATATTAATTTCCATGTCTTTTATAATTTGACCAAAATTAATTA
* * * **
47491544 ATTTAATTGTTTATATTACTAAGTAAGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
65 ATATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
47491609 TCATATATT
130 TCATATATT
* *
47491618 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATAATTTGACCAAAATTAATTAA
47491683 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47491748 CATATATT
131 CATATATT
* * * *
47491756 AATTATATTCTTTCCAAAATAATATTAATTTCCATGTCTTTTAT-ACTTGATCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATAATTTGACCAAAATTAATTAA
* * * *
47491820 TATAATTGTTTATATTAATAAATTCGATAAAATATGTACAATTAATATTTTTTATAAATCAAATT
66 TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
47491885 CATATATT
131 CATATATT
47491893 AATTATAT
1 AATTATAT
47491901 CTATGTTCTC
Statistics
Matches: 384, Mismatches: 32, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
137 92 0.24
138 178 0.46
139 98 0.26
140 3 0.01
141 1 0.00
142 12 0.03
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATAATTTGACCAAAATTAATTAA
TATAATTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:47497596 original size:21 final size:21
Alignment explanation
Indices: 47497567--47497608 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
47497557 AAATCCATTT
*
47497567 CATCATCTCCTTCTTCTTCGC
1 CATCATCTCCTTCCTCTTCGC
*
47497588 CATCCTCTCCTTCCTCTTCGC
1 CATCATCTCCTTCCTCTTCGC
47497609 TTTCACGCGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.48, G:0.05, T:0.40
Consensus pattern (21 bp):
CATCATCTCCTTCCTCTTCGC
Found at i:47500713 original size:18 final size:18
Alignment explanation
Indices: 47500690--47500728 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
47500680 CTTTATTTTG
47500690 AAATAGTTGAAAAATATC
1 AAATAGTTGAAAAATATC
47500708 AAATAGTTGAAAAATATC
1 AAATAGTTGAAAAATATC
47500726 AAA
1 AAA
47500729 ACTTTGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.59, C:0.05, G:0.10, T:0.26
Consensus pattern (18 bp):
AAATAGTTGAAAAATATC
Found at i:47500997 original size:5 final size:5
Alignment explanation
Indices: 47500987--47501019 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
47500977 ATATGGCAAA
47500987 AAAAG AAAAG AAAAG AAAAG AAAA- ATAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG A-AAAG AAA
47501020 CAAGAATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.04
5 24 0.92
6 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:47501181 original size:3 final size:3
Alignment explanation
Indices: 47501175--47501215 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
47501165 TAATAATATT
47501175 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TA
47501216 ATGATAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:47501769 original size:42 final size:42
Alignment explanation
Indices: 47501660--47502169 Score: 535
Period size: 42 Copynumber: 12.2 Consensus size: 42
47501650 ATATACAATA
* * * *
47501660 CAATGAAAAGTAAATAGACTTTCACACCTGTGCCT-TAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
47501701 GAATGAAAAGTAAATGGACTTTCACACCTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
47501743 CATTGAAAATTCAACT-GACCTCCACACTTGGGCCTCTAAATG
1 CAATGAAAAGT-AAATGGACCTCCACACCTGGGCCTCTAAATG
* * * * *
47501785 CAATGAAAATTCAATGGACCTCCGCACCGGGGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * * *
47501827 CAATGAAAAGAAAATGGACCTCCGCACCTAGGTCTCTAAATA
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * **
47501869 CAATGAAAAG-AAAGTGGACCTACACACTTTAGCCTCTAAATG
1 CAATGAAAAGTAAA-TGGACCTCCACACCTGGGCCTCTAAATG
* * *
47501911 CAATAAAAAGCAAATGGACCTCCACACTTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
47501953 CAATAAAAAGTAAATGGAACTCCACACCTGGGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
47501995 CAGTAAAAAGTAAATGGACCTCCACACATGGGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
47502037 CAAT-AGAAAGTAAATAGACCTCCACACTTGGGCCTCTAAATG
1 CAATGA-AAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
47502079 CAAT-AAAATGTAAATGGACCTCTACGCCTGGGCATCTAAATG
1 CAATGAAAA-GTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * ** *
47502121 CAATGAAAAGTGAATGGACCTCCACTCCTAGGTTTCTAAATA
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
47502163 CAATGAA
1 CAATGAA
47502170 TGTTTTCCTT
Statistics
Matches: 404, Mismatches: 57, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
41 41 0.10
42 353 0.87
43 10 0.02
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
Found at i:47503176 original size:20 final size:21
Alignment explanation
Indices: 47503151--47503195 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
47503141 CTTTTTCTCC
47503151 TTTTGTATT-TCATTTCTTCT-
1 TTTTGT-TTCTCATTTCTTCTG
*
47503171 TTTTGTTTCTTATTTCTTCTG
1 TTTTGTTTCTCATTTCTTCTG
47503192 TTTT
1 TTTT
47503196 CTTTTTTCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 2 0.09
20 16 0.73
21 4 0.18
ACGTcount: A:0.07, C:0.13, G:0.07, T:0.73
Consensus pattern (21 bp):
TTTTGTTTCTCATTTCTTCTG
Found at i:47505890 original size:14 final size:14
Alignment explanation
Indices: 47505871--47505898 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
47505861 TCATATTCAG
47505871 TGAACCATCTTGTT
1 TGAACCATCTTGTT
47505885 TGAACCATCTTGTT
1 TGAACCATCTTGTT
47505899 GCCGCAGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (14 bp):
TGAACCATCTTGTT
Found at i:47520217 original size:40 final size:41
Alignment explanation
Indices: 47520061--47520227 Score: 180
Period size: 42 Copynumber: 4.0 Consensus size: 41
47520051 AGGAGCACAA
* *
47520061 TCACTTAAGCTTGCA-TAGGGAGCTTTGTTGATACACAACTTG
1 TCACTTAAGC-T-CACTAGGGAGCTTCGCTGATACACAACTTG
* * *
47520103 TCAGTTAAGCTCACGT-GAGGAGCATT-GCTGATACACAGCTTA
1 TCACTTAAGCTCAC-TAG-GGAGC-TTCGCTGATACACAACTTG
* *
47520145 TCACTTGAGCTCATGTAGGGAGCTTCGCTGATACACAACTTG
1 TCACTTAAGCTCA-CTAGGGAGCTTCGCTGATACACAACTTG
*
47520187 TCACTTAAGCTCACT-GGGAGCTTCGCTGATACACAGCTTG
1 TCACTTAAGCTCACTAGGGAGCTTCGCTGATACACAACTTG
47520227 T
1 T
47520228 AAAAACCGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
40 27 0.25
41 5 0.05
42 71 0.67
43 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (41 bp):
TCACTTAAGCTCACTAGGGAGCTTCGCTGATACACAACTTG
Found at i:47523325 original size:28 final size:28
Alignment explanation
Indices: 47523293--47523367 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
47523283 AACAGTGTAA
*
47523293 GCCTTAGCCCAATATAGTAACAATGTGG
1 GCCTTAGCCCAATACAGTAACAATGTGG
*
47523321 GCCTTAGCCCAATACAGTAACATTGTGG
1 GCCTTAGCCCAATACAGTAACAATGTGG
47523349 GCCTTAGCCCAATACAGTA
1 GCCTTAGCCCAATACAGTA
47523368 TCGATACAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (28 bp):
GCCTTAGCCCAATACAGTAACAATGTGG
Found at i:47523638 original size:32 final size:32
Alignment explanation
Indices: 47523595--47523820 Score: 184
Period size: 32 Copynumber: 7.1 Consensus size: 32
47523585 GCCATAAATA
* *
47523595 CAGTAATATGATTGGCACA-ACGCCATCAGTAG
1 CAGTGATATGATCGGCACACA-GCCATCAGTAG
* * * * *
47523627 CAGTGAGATGATTGGCTCGCAGCCATCAGTAA
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
* * ** *
47523659 CGGTAATATGATCAACACAAAGCCATCAGTAG
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
* *
47523691 CAGTGATATGATCGACACACAGCCATCAGTAA
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
* * * * * *
47523723 CGGTAATATGATCGGTAAAAAGCCATCAGTGG
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
* *
47523755 CAGTGATATGATCAGCACACAGCCATCAGTAA
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
* * * * * *
47523787 CGGTAATATGACCGGCATAAAGCCATCAGCAG
1 CAGTGATATGATCGGCACACAGCCATCAGTAG
47523819 CA
1 CA
47523821 TCGCAGCAAA
Statistics
Matches: 148, Mismatches: 45, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
32 147 0.99
33 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (32 bp):
CAGTGATATGATCGGCACACAGCCATCAGTAG
Found at i:47523678 original size:64 final size:64
Alignment explanation
Indices: 47523610--47523820 Score: 269
Period size: 64 Copynumber: 3.3 Consensus size: 64
47523600 ATATGATTGG
* * * * *
47523610 CACAACGCCATCAGTAGCAGTGAGATGATTGGCTCGCAGCCATCAGTAACGGTAATATGATCAA
1 CACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAATATGATCAA
* **
47523674 CACAAAGCCATCAGTAGCAGTGATATGATCGACACACAGCCATCAGTAACGGTAATATGATCGG
1 CACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAATATGATCAA
* * * * * **
47523738 TAAAAAGCCATCAGTGGCAGTGATATGATCAGCACACAGCCATCAGTAACGGTAATATGACCGG
1 CACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAATATGATCAA
* *
47523802 CATAAAGCCATCAGCAGCA
1 CACAAAGCCATCAGTAGCA
47523821 TCGCAGCAAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 129 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (64 bp):
CACAAAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAGTAACGGTAATATGATCAA
Found at i:47524128 original size:27 final size:27
Alignment explanation
Indices: 47524098--47524189 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
47524088 GGTATTTTTT
*
47524098 TCATTTTACCCTAATA-GGGT-ATCTCGA
1 TCATTTTACCCT-ATAGGGGTAAT-TCAA
*
47524125 TCATTTTACCCTTTAGGGGTAATTCAA
1 TCATTTTACCCTATAGGGGTAATTCAA
* * *
47524152 TCATTTTACCC-ATCGAGGGTATTTCAG
1 TCATTTTACCCTATAG-GGGTAATTCAA
*
47524179 TAATTTTACCC
1 TCATTTTACCC
47524190 ATTGAGGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 4 0.07
27 49 0.89
28 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTAATTCAA
Found at i:47524309 original size:81 final size:81
Alignment explanation
Indices: 47524100--47524321 Score: 227
Period size: 81 Copynumber: 2.7 Consensus size: 81
47524090 TATTTTTTTC
* * * * * *
47524100 ATTTTACCCTAAT-AGGGTATCTCGATCATTTTACCCTTT-AGGGGTAATTCAATCATTTTACCC
1 ATTTTACCC-ATTCAGGGTATTTCGATAATTTTA-CCTTTCAAGGGTATTTCAATAATTTTACCC
47524163 ATCGAGGGTATTTCAGTA
64 ATCGAGGGTATTTCAGTA
* * * * * *
47524181 ATTTTACCCATTGAGGGTATTTCGGTAATTTTACCCTTCGAGAGTATTTCGATAATTTTACCCAT
1 ATTTTACCCATTCAGGGTATTTCGATAATTTTACCTTTCAAGGGTATTTCAATAATTTTACCCAT
* *
47524246 TGGGGGTATTTC-GCTA
66 CGAGGGTATTTCAG-TA
* * *
47524262 ATTTTACCC-TTCAGAGGTATTTTGATAATTTTACCTTTCAAGGGTATTTTAGTAATTTTA
1 ATTTTACCCATTCAG-GGTATTTCGATAATTTTACCTTTCAAGGGTATTTCAATAATTTTA
47524322 TAGGCCCATT
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
80 11 0.10
81 104 0.90
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (81 bp):
ATTTTACCCATTCAGGGTATTTCGATAATTTTACCTTTCAAGGGTATTTCAATAATTTTACCCAT
CGAGGGTATTTCAGTA
Found at i:47524311 original size:27 final size:27
Alignment explanation
Indices: 47524113--47524310 Score: 190
Period size: 27 Copynumber: 7.3 Consensus size: 27
47524103 TTACCCTAAT
* * *
47524113 AGGGTATCTCGATCATTTTACCCTT-T
1 AGGGTATTTCGATAATTTTACCCTTCG
* * * *
47524139 AGGGGTAATTCAATCATTTTACCCATCG
1 A-GGGTATTTCGATAATTTTACCCTTCG
47524167 AGGGTATTTC-AGTAATTTTACCCATT-G
1 AGGGTATTTCGA-TAATTTTACCC-TTCG
*
47524194 AGGGTATTTCGGTAATTTTACCCTTCG
1 AGGGTATTTCGATAATTTTACCCTTCG
*
47524221 AGAGTATTTCGATAATTTTACCCATT-G
1 AGGGTATTTCGATAATTTTACCC-TTCG
* *
47524248 GGGGTATTTCGCTAATTTTACCCTTC-
1 AGGGTATTTCGATAATTTTACCCTTCG
* * *
47524274 AGAGGTATTTTGATAATTTTACCTTTCA
1 AG-GGTATTTCGATAATTTTACCCTTCG
47524302 AGGGTATTT
1 AGGGTATTT
47524311 TAGTAATTTT
Statistics
Matches: 144, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.05
27 131 0.91
28 6 0.04
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACCCTTCG
Found at i:47533215 original size:20 final size:21
Alignment explanation
Indices: 47533180--47533218 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
47533170 GTTGGGAATA
47533180 TATATTAATTACATGTTTTTT
1 TATATTAATTACATGTTTTTT
*
47533201 TATATT-ATTAGATGTTTT
1 TATATTAATTACATGTTTT
47533219 GAATGTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.62
Consensus pattern (21 bp):
TATATTAATTACATGTTTTTT
Found at i:47536169 original size:25 final size:24
Alignment explanation
Indices: 47536125--47536175 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
47536115 TTTATGTGAA
*
47536125 TAAAATATTAATTAATTATAATAAT
1 TAAAATATTAATCAATTATAA-AAT
47536150 TAAAATATTAATC-ATATATAAAAT
1 TAAAATATTAATCAAT-TATAAAAT
47536174 TA
1 TA
47536176 TAAAAAGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TAAAATATTAATCAATTATAAAAT
Found at i:47537227 original size:3 final size:3
Alignment explanation
Indices: 47537219--47537262 Score: 52
Period size: 3 Copynumber: 13.3 Consensus size: 3
47537209 AAAAGAACCC
47537219 CAT CAT CAT CAT CCAT CAT CCAT CAT CTAT CAT CCAT CAT CAT C
1 CAT CAT CAT CAT -CAT CAT -CAT CAT C-AT CAT -CAT CAT CAT C
47537263 GACGTACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 25 0.68
4 12 0.32
ACGTcount: A:0.30, C:0.39, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:47537237 original size:7 final size:7
Alignment explanation
Indices: 47537218--47537259 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
47537208 AAAAAGAACC
47537218 CCATCAT
1 CCATCAT
47537225 -CATCAT
1 CCATCAT
47537231 CCATCAT
1 CCATCAT
47537238 CCATCAT
1 CCATCAT
*
47537245 CTATCAT
1 CCATCAT
47537252 CCATCAT
1 CCATCAT
47537259 C
1 C
47537260 ATCGACGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (7 bp):
CCATCAT
Found at i:47540772 original size:2 final size:2
Alignment explanation
Indices: 47540767--47540799 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
47540757 TAAAAAAAAT
47540767 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
47540800 TTTCAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:47541559 original size:18 final size:18
Alignment explanation
Indices: 47541536--47541574 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
47541526 AATCAACCAT
47541536 TAAAAATATAGAAAAAA-A
1 TAAAAAT-TAGAAAAAATA
*
47541554 TAAAAATTTGAAAAAATA
1 TAAAAATTAGAAAAAATA
47541572 TAA
1 TAA
47541575 CCACCTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
TAAAAATTAGAAAAAATA
Found at i:47547478 original size:130 final size:129
Alignment explanation
Indices: 47547301--47547548 Score: 361
Period size: 130 Copynumber: 1.9 Consensus size: 129
47547291 TCACGAACAA
* ** *
47547301 TGTTGAAGTTTATCAGCTAAGAGCGTAGGTCCGTGAGCTGTTTTAGAGTAGCGAGCTTAAATCAG
1 TGTTAAAGTTTATCAGCTAAGAGCGTAGGTCCACGAGCTGTTCTAGAGTAGCGAGCTTAAATCAG
* * * **
47547366 CTAACTCAAATAAATGAATGTTGTGAGTATAACTCAGCTAACCTTTAAACATCAACTGCGAGATG
66 CTAACTCAAA-AAATGAAGGTTGTAAGTATAACTCAACTAAAATTTAAACATCAACTGCGAGATG
* * * *
47547431 TGTTAAAGTTTATCAGTTAGGAGTGTAGGTCCACGAGCTGTTCTAGAGTAGCGAGCTTAACTCAG
1 TGTTAAAGTTTATCAGCTAAGAGCGTAGGTCCACGAGCTGTTCTAGAGTAGCGAGCTTAAATCAG
*
47547496 CTAACTCAAAAAATGAAGGTTGTAAGTGTAACTCAACTAAAATTTAAACATCA
66 CTAACTCAAAAAATGAAGGTTGTAAGTATAACTCAACTAAAATTTAAACATCA
47547549 GTTGGGAGCA
Statistics
Matches: 104, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
129 37 0.36
130 67 0.64
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (129 bp):
TGTTAAAGTTTATCAGCTAAGAGCGTAGGTCCACGAGCTGTTCTAGAGTAGCGAGCTTAAATCAG
CTAACTCAAAAAATGAAGGTTGTAAGTATAACTCAACTAAAATTTAAACATCAACTGCGAGATG
Found at i:47547685 original size:103 final size:102
Alignment explanation
Indices: 47547456--47547685 Score: 254
Period size: 103 Copynumber: 2.2 Consensus size: 102
47547446 GTTAGGAGTG
* *
47547456 TAGGTCCACGAGCTGTTCTAGAGTAGCGAGCTTAACTCAGCTAACTCAAAAAATGAAGGTTGTAA
1 TAGGTCCACGAGCTATT-TAAAGTAGCGAGCTTAACTCAGCTAACTCAAAAAATGAAGGTTGTAA
* *
47547521 GTGTAACTCAACTAAAATTTAAACATCAGTTGGGAGCA
65 GTATAACTCAACTAAAATTTAAACATCAGTTGAGAGCA
* * ***
47547559 AAAGTCTGTGAG-TACTTTCAAAGTAGCGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGT
1 TAGGTCCACGAGCTA-TTT-AAAGTAGCGAGCTTAACTCAGCTAACTCAAA-AAATGAAGGTTGT
**
47547623 GAA-TATAA-T-ATAGCTAACCTTTAAA-ATCAGTTGAGAGCA
63 -AAGTATAACTCA-A-CTAAAATTTAAACATCAGTTGAGAGCA
47547662 TAGGTCCACGAGCTATGTTAAAGT
1 TAGGTCCACGAGCTAT-TTAAAGT
47547686 TTATCAACTT
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
102 3 0.03
103 67 0.65
104 31 0.30
105 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (102 bp):
TAGGTCCACGAGCTATTTAAAGTAGCGAGCTTAACTCAGCTAACTCAAAAAATGAAGGTTGTAAG
TATAACTCAACTAAAATTTAAACATCAGTTGAGAGCA
Found at i:47551841 original size:42 final size:42
Alignment explanation
Indices: 47551794--47551875 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
47551784 GGGTATAAGG
* *
47551794 TTCAAACTTA-CCTTGAGGGATGTACTTCATTATGCACTCTGC
1 TTCAAACTTACCCTCG-GGGATGTACCTCATTATGCACTCTGC
47551836 TTCAAACTTACCCTCGGGGATGTACCTCATTATGCACTCT
1 TTCAAACTTACCCTCGGGGATGTACCTCATTATGCACTCT
47551876 AGTTAAGCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 33 0.89
43 4 0.11
ACGTcount: A:0.23, C:0.27, G:0.16, T:0.34
Consensus pattern (42 bp):
TTCAAACTTACCCTCGGGGATGTACCTCATTATGCACTCTGC
Found at i:47575917 original size:97 final size:97
Alignment explanation
Indices: 47575788--47575987 Score: 346
Period size: 97 Copynumber: 2.1 Consensus size: 97
47575778 TTCTGTAGGA
47575788 AAAATGACTCGTGGAAAGAACACGCCGATATTGAACGAGGCAGAAACCAATAAGACAAGAAAGGG
1 AAAATGACTCGTGGAAAGAACACGCCGATATTGAACGAGGCAGAAACCAATAAGACAAGAAAGGG
47575853 CAAAGCCAAAGCCAACAGCAAAGGAACAAACC
66 CAAAGCCAAAGCCAACAGCAAAGGAACAAACC
* * * * *
47575885 AAAATTACTCGTGGCAAGAACACGCCGATATTGAAGGAGGCGGAAACCAGTAAGACAAGAAAGGG
1 AAAATGACTCGTGGAAAGAACACGCCGATATTGAACGAGGCAGAAACCAATAAGACAAGAAAGGG
47575950 CAAAGCCAAAGCCAACAGCAAAGGAACAAACC
66 CAAAGCCAAAGCCAACAGCAAAGGAACAAACC
*
47575982 TAAATG
1 AAAATG
47575988 TAGAGACATC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.47, C:0.21, G:0.23, T:0.09
Consensus pattern (97 bp):
AAAATGACTCGTGGAAAGAACACGCCGATATTGAACGAGGCAGAAACCAATAAGACAAGAAAGGG
CAAAGCCAAAGCCAACAGCAAAGGAACAAACC
Found at i:47576427 original size:21 final size:21
Alignment explanation
Indices: 47576402--47576452 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
47576392 GTTGAGAAGG
*
47576402 AAGTTGCTGCTGTAGAAGAAA
1 AAGTTGCTGCTGAAGAAGAAA
* *
47576423 AAGTTGTTGCTGAAGAAGAAG
1 AAGTTGCTGCTGAAGAAGAAA
47576444 AAGTTGCTG
1 AAGTTGCTG
47576453 AAAATGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.25
Consensus pattern (21 bp):
AAGTTGCTGCTGAAGAAGAAA
Found at i:47576439 original size:18 final size:18
Alignment explanation
Indices: 47576416--47576454 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
47576406 TGCTGCTGTA
**
47576416 GAAGAAAAAGTTGTTGCT
1 GAAGAAAAAGAAGTTGCT
*
47576434 GAAGAAGAAGAAGTTGCT
1 GAAGAAAAAGAAGTTGCT
47576452 GAA
1 GAA
47576455 AATGAGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.31, T:0.21
Consensus pattern (18 bp):
GAAGAAAAAGAAGTTGCT
Found at i:47577183 original size:21 final size:21
Alignment explanation
Indices: 47577158--47577199 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
47577148 ATCTTCAAGG
47577158 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
47577179 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
47577200 TTCTAATCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:47577233 original size:23 final size:23
Alignment explanation
Indices: 47577170--47577235 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
47577160 ATGCAATCTT
*
47577170 AGATATGATATATGCAATCTT---
1 AGATATGATAT-TGTAATCTTAGA
*
47577191 AGATATGAT-TTCTAATCTTAGA
1 AGATATGATATTGTAATCTTAGA
47577213 AGATATGATATTGTAATCTTAGA
1 AGATATGATATTGTAATCTTAGA
47577236 GATTTAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
19 7 0.18
20 1 0.03
21 9 0.24
22 9 0.24
23 12 0.32
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (23 bp):
AGATATGATATTGTAATCTTAGA
Found at i:47582834 original size:6 final size:6
Alignment explanation
Indices: 47582779--47582817 Score: 53
Period size: 6 Copynumber: 6.5 Consensus size: 6
47582769 TGATGATGGA
*
47582779 AAAAAG GAAAAG AAAAAG -AAAAG AAAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAA
47582818 GAATAAGAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
6 19 0.66
7 5 0.17
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:47584205 original size:44 final size:44
Alignment explanation
Indices: 47584137--47584434 Score: 431
Period size: 44 Copynumber: 6.8 Consensus size: 44
47584127 TGACTCCAAC
* *
47584137 CCTATCTCCCTGGTCAGCAATGGAATAGGTTAAAGATTGTAAGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
47584181 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-T
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT
* * * *
47584225 TCTATCTCCTTGGTTAGCAGTGGAATAGGTTGAATATTGTAAGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* *
47584269 CCTATCTCCTTGGTCAACAGTGGAATAGGTTGAAGATTGTAAGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
*
47584313 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAATGTAAGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
* * *
47584357 CCTATCTACCTGGTCAGCAATGGAATAGATTGAAGATTGTGAA-T
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGT
*
47584401 CCTATCTCCCTGAG-CAACAGTGGAATAGGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
47584435 AATAGCAAAT
Statistics
Matches: 229, Mismatches: 21, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
43 2 0.01
44 222 0.97
45 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGT
Found at i:47584989 original size:268 final size:267
Alignment explanation
Indices: 47584512--47585125 Score: 978
Period size: 268 Copynumber: 2.3 Consensus size: 267
47584502 GTTGCAATGG
* *
47584512 AAAAGATTGAAGCCACAACGGCGAATCTTATTTCCCTGGCATTGTAGCGGAGCAGATTGAAGCCA
1 AAAAGATTGAAGCCGCAACGGCGAATCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCA
* *
47584577 CGGCGGTGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGTGGATTGAAGCT
66 CGACGGTGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCT
* *
47584642 GTGGGCAGCGAATCCTATCACTTTGGCATTACAGTGGAGCAGATTGAAACCACAACGGTGGATCT
131 GTGGGCAGCGAATCCTATCACTTTAGCATTACAGTGGAGCAGATTGAAACCACAACGGTGAATCT
* * *
47584707 TACTCCCTTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATT
196 TACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGACGGCAAATCTTGTTTCCCCAACATT
*
47584772 GCAATTTA
261 ACAA-TTA
*
47584780 AAAAGATTGAAGCCGCAACGGTGAATCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCA
1 AAAAGATTGAAGCCGCAACGGCGAATCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCA
* *
47584845 CGATGGTGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGTAGCGGATTGAAGCT
66 CGACGGTGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCT
* * *
47584910 GTGGGCAGCGAATCCTATCTCTTTAGCATTACAGTGGAGCAGATTGAAGCCGCAACGGTGAATCT
131 GTGGGCAGCGAATCCTATCACTTTAGCATTACAGTGGAGCAGATTGAAACCACAACGGTGAATCT
*
47584975 TACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGACGGTAAATCTTGTTTCCCCAACATT
196 TACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGACGGCAAATCTTGTTTCCCCAACATT
47585040 ACAATTA
261 ACAATTA
* * * * * * * *
47585047 AAAAGATTGAAGGCGCAATGGCAAATCTTACTCCCCTGGCAG-TGTAGTGGAACAGATTGAAGCT
1 AAAAGATTGAAGCCGCAACGGCGAATCTTATTTCCCTGGC-GTTGTAGCGGAGCAGATTGAAGCC
47585111 ACGACGGTGAATCTT
65 ACGACGGTGAATCTT
47585126 GTTTCCCTAA
Statistics
Matches: 318, Mismatches: 27, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
267 70 0.22
268 248 0.78
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (267 bp):
AAAAGATTGAAGCCGCAACGGCGAATCTTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCCA
CGACGGTGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCT
GTGGGCAGCGAATCCTATCACTTTAGCATTACAGTGGAGCAGATTGAAACCACAACGGTGAATCT
TACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGACGGCAAATCTTGTTTCCCCAACATT
ACAATTA
Found at i:47585074 original size:100 final size:100
Alignment explanation
Indices: 47584950--47585258 Score: 447
Period size: 100 Copynumber: 3.1 Consensus size: 100
47584940 ACAGTGGAGC
* *
47584950 AGATTGAAGCCGCAACGGTGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCCACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
* *
47585015 CGGTAAATCTTGTTTCCCCAACATTACAATTAAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
* * * *
47585050 AGATTGAAGGCGCAATGGCAAATCTTACTCCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
*
47585115 CGGTGAATCTTGTTTCCCTAACATTGCAATTAAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
* * *
47585150 AGATTGAACCCGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGTTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
* ** * * *
47585215 TGACGAATCTTATTTTCCCAACATTGCAATTTAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
*
47585250 AGACTGAAG
1 AGATTGAAG
47585259 ATAGCAAATC
Statistics
Matches: 184, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 184 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCGCAACGGCGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
CGGTGAATCTTGTTTCCCCAACATTGCAATTAAAA
Found at i:47585204 original size:50 final size:50
Alignment explanation
Indices: 47584942--47585208 Score: 183
Period size: 50 Copynumber: 5.3 Consensus size: 50
47584932 TTAGCATTAC
* * *
47584942 AGTGGAGCAGATTGAAGCCGCAACGGTGAATCTTACTCCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
* * * ** *** * **
47584992 AGTGGAACAGATTGAAGCCACGACGGTAAATCTTGTTTCCCCAACATTAC
1 AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
* ** * * * ** *
47585042 AATTAAAAAGATTGAAGGCGCAATGGCAAATCTTACTCCCCTGGCAGTGT
1 AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
** * ** ** * *
47585092 AGTGGAACAGATTGAAGCTACGACGGTGAATCTTGTTTCCCTAACATTGC
1 AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
* ** * * * *
47585142 AATTAAAAAGATTGAACCCGCAACGGCGAATCTTACTTCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
47585192 AGTGGAACAGATTGAAG
1 AGTGGAACAGATTGAAG
47585209 TTACGATGAC
Statistics
Matches: 146, Mismatches: 71, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
50 146 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCAGTGT
Found at i:47585362 original size:44 final size:43
Alignment explanation
Indices: 47585266--47585643 Score: 191
Period size: 44 Copynumber: 8.7 Consensus size: 43
47585256 AAGATAGCAA
* * * * *
47585266 ATCTTATCTCTCTGAAGTTGTAGTGGAGTAGATTAAAGCCAATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAA-G
* * *
47585310 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA-AG
* * ** * *
47585354 ATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATT-GCATCTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAAG
* * *
47585395 -TCTTATCTCCTTGAAGTTGCAGTGGAGCAGAGTAAGTAAGCAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACCAAG
* * * * * ** *
47585439 -TCTTATC-CTTCTAAAGTTACAGT-GAGGCATACTGAAGATGGCGA-
1 ATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-ACCAAG
* * *
47585483 ATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAA-G
* * * * *
47585527 ATCCTATCTCCCTGAAGTTGTAGTAGAGCGGATTAAAACCACTG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCA-AG
* * * * * * * *
47585571 ATCTTATCT-CTTTAATGTTGCAGTAGAGTAGA-TCACATC-GG
1 ATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAACCAAG
* *
47585612 GTCTTATCTCCCTGAAGCTGCAGTGGAGCAGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
47585644 CTCAAGAAAA
Statistics
Matches: 254, Mismatches: 63, Indels: 37
0.72 0.18 0.10
Matches are distributed among these distances:
40 20 0.08
41 32 0.13
42 10 0.04
43 20 0.08
44 140 0.55
45 29 0.11
46 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCAAG
Found at i:47586280 original size:19 final size:19
Alignment explanation
Indices: 47586256--47586313 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 19
47586246 AATCTTCAAG
*
47586256 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
47586275 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
47586297 GATATTGTAATCTTAGA
1 GATA-TGTAATCTTAGA
47586314 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 12 0.35
20 3 0.09
22 10 0.29
23 9 0.26
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:47586297 original size:22 final size:23
Alignment explanation
Indices: 47586269--47586313 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
47586259 ATGCAATCTT
47586269 AGATATGATA-TGTAATCTTAGA
1 AGATATGATATTGTAATCTTAGA
47586291 AGATATGATATTGTAATCTTAGA
1 AGATATGATATTGTAATCTTAGA
47586314 GATTTAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (23 bp):
AGATATGATATTGTAATCTTAGA
Found at i:47586795 original size:3 final size:3
Alignment explanation
Indices: 47586787--47586817 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
47586777 ATCTTGTATC
47586787 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
47586818 CCACGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:47590959 original size:19 final size:16
Alignment explanation
Indices: 47590933--47590975 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 16
47590923 ACATAAAATG
47590933 TTATTAAAAATTTATATT
1 TTATTAAAAA-TTAT-TT
*
47590951 TTAATTAAATATTATTT
1 TT-ATTAAAAATTATTT
47590968 TTATTAAA
1 TTATTAAA
47590976 TTAGATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 6 0.26
17 4 0.17
18 6 0.26
19 7 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTAAAAATTATTT
Found at i:47590969 original size:17 final size:16
Alignment explanation
Indices: 47590940--47590977 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
47590930 ATGTTATTAA
47590940 AAATTTATATTTTAATT
1 AAATTTATATTTT-ATT
47590957 AAATATTAT-TTTTATT
1 AAAT-TTATATTTTATT
47590973 AAATT
1 AAATT
47590978 AGATTTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 7 0.35
17 8 0.40
18 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AAATTTATATTTTATT
Found at i:47602762 original size:89 final size:89
Alignment explanation
Indices: 47602595--47602763 Score: 196
Period size: 89 Copynumber: 1.9 Consensus size: 89
47602585 TACTGGTGGC
** ** *
47602595 GAAAACAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATACCAGATCTTGCCTTCCC
1 GAAAACAGATATTGTCTTCATGTACCGGCGTGAAACAGATCAAAGATACCAGATCCTGCCTTCCC
*
47602660 ATACTGGTGGCGAAGCAGATCAAA
66 ATACTGGTAGCGAAGCAGATCAAA
* * * ** * * *
47602684 GAAAGCAGATCTTGTTTTCATGTACCGGCGTGAAACAGATCAAAGATAGTAGGTCCTGTCTTCCT
1 GAAAACAGATATTGTCTTCATGTACCGGCGTGAAACAGATCAAAGATACCAGATCCTGCCTTCCC
47602749 ATA-TCGGTAGCGAAG
66 ATACT-GGTAGCGAAG
47602764 TGGATCGAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
88 1 0.02
89 64 0.98
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (89 bp):
GAAAACAGATATTGTCTTCATGTACCGGCGTGAAACAGATCAAAGATACCAGATCCTGCCTTCCC
ATACTGGTAGCGAAGCAGATCAAA
Found at i:47603025 original size:44 final size:44
Alignment explanation
Indices: 47602938--47603052 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
47602928 CAGTGGAATC
*
47602938 GATCGGAAAAAGCAGATCTTGTCTTCATGTATTGAAGTAAAGTA
1 GATCGGAAAAAGCAGATCTTGTCTTCATGTATGGAAGTAAAGTA
* *
47602982 GATCGGAGAAAA-CAGATCTTGTCTTCATGTACTGGCA-TGAAGTA
1 GATCGGA-AAAAGCAGATCTTGTCTTCATGTA-TGGAAGTAAAGTA
***
47603026 GATAAAAAATAAGCAGATCTTGTCTTC
1 GATCGGAAA-AAGCAGATCTTGTCTTC
47603053 CCATACTGGT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
43 2 0.03
44 38 0.62
45 21 0.34
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (44 bp):
GATCGGAAAAAGCAGATCTTGTCTTCATGTATGGAAGTAAAGTA
Found at i:47606266 original size:27 final size:27
Alignment explanation
Indices: 47606215--47606266 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
47606205 AGAATAATAA
* *
47606215 ATTTTATATACAATAAATATTTTAATT
1 ATTTTATATAAAATAAATATATTAATT
* *
47606242 ATTTTATATAAAATAACTCTATTAA
1 ATTTTATATAAAATAAATATATTAA
47606267 ATATATATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTTTATATAAAATAAATATATTAATT
Found at i:47607232 original size:3 final size:3
Alignment explanation
Indices: 47607224--47607271 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
47607214 TTAGTGCCGG
47607224 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
47607272 TTGTTTTAAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:47607693 original size:3 final size:3
Alignment explanation
Indices: 47607680--47607711 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
47607670 GTTACCATAA
*
47607680 GGT GAT GGT GGT GGT GGT GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
47607712 AAAATACGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.66, T:0.31
Consensus pattern (3 bp):
GGT
Found at i:47608599 original size:18 final size:18
Alignment explanation
Indices: 47608546--47608600 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
47608536 AATATTTTTA
*
47608546 TATTATTTAATTTTAATATAT
1 TATTTTTTAA-TTT-ATA-AT
47608567 TATTCTTTT--TTTATAAT
1 TATT-TTTTAATTTATAAT
47608584 TATTTTTTAATTTATAA
1 TATTTTTTAATTTATAA
47608601 AACTTCGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
16 4 0.13
17 6 0.20
18 10 0.33
19 3 0.10
21 4 0.13
22 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTTTTTAATTTATAAT
Found at i:47616270 original size:51 final size:51
Alignment explanation
Indices: 47616144--47616320 Score: 216
Period size: 51 Copynumber: 3.5 Consensus size: 51
47616134 AGTGAAAGTG
* * *
47616144 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGA-A-TG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * *
47616193 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
* * * * *
47616244 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
47616296 ATGGTCACATGTGTAGTACTATGTG
1 ATGGTCACATGTGTAGTACTATGTG
47616321 AACCGAACAT
Statistics
Matches: 107, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.02
50 39 0.36
51 64 0.60
52 2 0.02
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTA
Found at i:47616391 original size:45 final size:45
Alignment explanation
Indices: 47616322--47616416 Score: 163
Period size: 45 Copynumber: 2.1 Consensus size: 45
47616312 TACTATGTGA
* *
47616322 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
*
47616367 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
47616412 ACCGA
1 ACCGA
47616417 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:47618387 original size:16 final size:16
Alignment explanation
Indices: 47618363--47618430 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
47618353 GTTAACGGAG
47618363 GTGGCGAGCTAGTGGA
1 GTGGCGAGCTAGTGGA
* *
47618379 GTGGTGAGCTAGTAGA
1 GTGGCGAGCTAGTGGA
*
47618395 GTTGGCGAGCTAGCGGA
1 G-TGGCGAGCTAGTGGA
*
47618412 GGTGGC-AGCTAGTGAA
1 -GTGGCGAGCTAGTGGA
47618428 GTG
1 GTG
47618431 ACAAGCTGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 3 0.07
16 23 0.53
17 16 0.37
18 1 0.02
ACGTcount: A:0.21, C:0.12, G:0.47, T:0.21
Consensus pattern (16 bp):
GTGGCGAGCTAGTGGA
Found at i:47620319 original size:17 final size:17
Alignment explanation
Indices: 47620294--47620372 Score: 79
Period size: 17 Copynumber: 4.7 Consensus size: 17
47620284 AGTTAGCAGA
* *
47620294 GTGGTGAGCTAGTGAAG
1 GTGGCGAGCTAGCGAAG
* *
47620311 GTGGCGAGCTAGTGGAG
1 GTGGCGAGCTAGCGAAG
* *
47620328 TTGGCGAACTAGCGAAG
1 GTGGCGAGCTAGCGAAG
* *
47620345 GTGGTGAGCTAGCGGA-
1 GTGGCGAGCTAGCGAAG
47620361 GTGGCGAGCTAG
1 GTGGCGAGCTAG
47620373 AAGAGGTTGC
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
16 11 0.22
17 40 0.78
ACGTcount: A:0.22, C:0.13, G:0.47, T:0.19
Consensus pattern (17 bp):
GTGGCGAGCTAGCGAAG
Found at i:47620354 original size:34 final size:33
Alignment explanation
Indices: 47620287--47620372 Score: 100
Period size: 34 Copynumber: 2.6 Consensus size: 33
47620277 TATGGTGAGT
* * * *
47620287 TAGCAGAGTGGTGAGCTAGTGAAGGTGGCGAGC
1 TAGCGGAGTGGCGAACTAGCGAAGGTGGCGAGC
* *
47620320 TAGTGGAGTTGGCGAACTAGCGAAGGTGGTGAGC
1 TAGCGGAG-TGGCGAACTAGCGAAGGTGGCGAGC
*
47620354 TAGCGGAGTGGCGAGCTAG
1 TAGCGGAGTGGCGAACTAG
47620373 AAGAGGTTGC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 16 0.36
34 28 0.64
ACGTcount: A:0.23, C:0.13, G:0.45, T:0.19
Consensus pattern (33 bp):
TAGCGGAGTGGCGAACTAGCGAAGGTGGCGAGC
Found at i:47620390 original size:50 final size:51
Alignment explanation
Indices: 47620294--47620393 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 51
47620284 AGTTAGCAGA
* **
47620294 GTGGTGAGCTAGTGAAGGTGGCGAGCTAGTGGAGTTGGCGAACTAGCGAAG
1 GTGGTGAGCTAGCGAAGGTGGCGAGCTAGAAGAGTTGGCGAACTAGCGAAG
*
47620345 GTGGTGAGCTAGCGGA-GTGGCGAGCTAGAAGAGGTT-GC-AAGCTAGCGAA
1 GTGGTGAGCTAGCGAAGGTGGCGAGCTAGAAGA-GTTGGCGAA-CTAGCGAA
47620394 CGCTAGCGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
49 2 0.05
50 24 0.56
51 17 0.40
ACGTcount: A:0.25, C:0.13, G:0.44, T:0.18
Consensus pattern (51 bp):
GTGGTGAGCTAGCGAAGGTGGCGAGCTAGAAGAGTTGGCGAACTAGCGAAG
Found at i:47620907 original size:23 final size:23
Alignment explanation
Indices: 47620857--47620909 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
47620847 AAAATTAGGT
47620857 GAGTTGTACAGCAAAACTTTGAC
1 GAGTTGTACAGCAAAACTTTGAC
*
47620880 TAGTTGTACAGCGAAAA-TTT-AGC
1 GAGTTGTACAGC-AAAACTTTGA-C
47620903 GAGTTGT
1 GAGTTGT
47620910 GCTTTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 21 0.81
24 4 0.15
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (23 bp):
GAGTTGTACAGCAAAACTTTGAC
Found at i:47621286 original size:108 final size:107
Alignment explanation
Indices: 47621149--47621666 Score: 447
Period size: 108 Copynumber: 4.8 Consensus size: 107
47621139 AAGATTCTGG
** *
47621149 AAATCTTGTAAGTATAAGGCTGAAATCTTAAATCAGTGAGCTGCAAGATTCAAAAAATCTTGTAA
1 AAATCTTGTAAGTATAAGGCTGCGATCTTAAAT-AG-GAACTGCAAGATTCAAAAAATCTTGTAA
* * *
47621214 GTATAAGGTTGCGATCTTAAATTGGA-GAGCCATAGGATT-TAGA
64 GTATAAGGTTGCGATCTTAAATTGGACGAGCCACAAGATTCGA-A
* * * * ** *
47621257 AAATCTTATAAGTATAAGGTTGCGGTCTTAAATTGGCAAACCACAA-ATTCAGAAAATCTTGTAA
1 AAATCTTGTAAGTATAAGGCTGCGATCTTAAATAGG--AACTGCAAGATTCAAAAAATCTTGTAA
* * * * *
47621321 GTATAAGGCTACGATCTTAAATT-GACGAGTCGCAAGATTTGAA
64 GTATAAGGTTGCGATCTTAAATTGGACGAGCCACAAGATTCGAA
** * * * *
47621364 AAATCTTGTATCTATAAGGGTGTGATCATAAATTGGCAACTTGCAAGATTCAAAAAATCTTGTAA
1 AAATCTTGTAAGTATAAGGCTGCGATCTTAAATAGG-AAC-TGCAAGATTCAAAAAATCTTGTAA
* * * * *
47621429 GTATAAGGCTT-TGATATTAAA-TCGACAAGCTACAAGATTCGAA
64 GTATAAGG-TTGCGATCTTAAATTGGACGAGCCACAAGATTCGAA
* * * * * *
47621472 AAATCTTGTAAGTATAAGGTTGTGATCTTAAATAGGAAAATTGTAGGATTCAAAAAATCTTATAA
1 AAATCTTGTAAGTATAAGGCTGCGATCTTAAATAGG--AACTGCAAGATTCAAAAAATCTTGTAA
* * * *
47621537 GTATAAGGTTGCAATTTTAAATTGG-CAAGCCGCAAGATTCGAA
64 GTATAAGGTTGCGATCTTAAATTGGACGAGCCACAAGATTCGAA
* * * * * *
47621580 AAATCTTTTAAGTATAAAGCTACGATCTTAAATCGGCGACTGTCGAGATTCAAAAAATCTTGTAA
1 AAATCTTGTAAGTATAAGGCTGCGATCTTAAATAGG-AACTG-CAAGATTCAAAAAATCTTGTAA
** *
47621645 GTATAAGACTGCAATCTTAAAT
64 GTATAAGGTTGCGATCTTAAAT
47621667 CGATGAGCCA
Statistics
Matches: 330, Mismatches: 68, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
106 6 0.02
107 87 0.26
108 232 0.70
109 5 0.02
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (107 bp):
AAATCTTGTAAGTATAAGGCTGCGATCTTAAATAGGAACTGCAAGATTCAAAAAATCTTGTAAGT
ATAAGGTTGCGATCTTAAATTGGACGAGCCACAAGATTCGAA
Found at i:47621668 original size:54 final size:54
Alignment explanation
Indices: 47621132--47621666 Score: 385
Period size: 54 Copynumber: 9.9 Consensus size: 54
47621122 CTTAAACCGA
*** ** *
47621132 CAACTG-CAAGATTCTGGAAATCTTGTAAGTATAAGGCTGAAATCTTAAATCAGTG
1 CAACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAAT-TG-G
* *
47621187 -AGCTG-CAAGATTCAAAAAATCTTGTAAGTATAAGGTTGCGATCTTAAATTGG
1 CAACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * * * * *
47621239 -AGA--GCCATAGGATTTAGAAAATCTTATAAGTATAAGGTTGCGGTCTTAAATTGG
1 CA-ACTGTCA-A-GATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
** * * *
47621293 CAAAC-CACAA-ATTCAGAAAATCTTGTAAGTATAAGGCTACGATCTTAAATTGA
1 C-AACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * ** ** * * *
47621346 CGAGTCG-CAAGATTTGAAAAATCTTGTATCTATAAGGGTGTGATCATAAATTGG
1 CAACT-GTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
** * * *
47621400 CAACT-TGCAAGATTCAAAAAATCTTGTAAGTATAAGGCTTTGATATTAAATCGA
1 CAACTGT-CAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * * * *
47621454 CAAGCT-ACAAGATTCGAAAAATCTTGTAAGTATAAGGTTGTGATCTTAAATAGG
1 CAA-CTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * * * * * *
47621508 AAAATTGT-AGGATTCAAAAAATCTTATAAGTATAAGGTTGCAATTTTAAATTGG
1 -CAACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * * * * *
47621562 CAAGCCG-CAAGATTCGAAAAATCTTTTAAGTATAAAGCTACGATCTTAAATCGG
1 CAA-CTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
* * * *
47621616 CGACTGTCGAGATTCAAAAAATCTTGTAAGTATAAGACTGCAATCTTAAAT
1 CAACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAAT
47621667 CGATGAGCCA
Statistics
Matches: 378, Mismatches: 84, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
51 1 0.00
52 5 0.01
53 47 0.12
54 316 0.84
55 6 0.02
56 3 0.01
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (54 bp):
CAACTGTCAAGATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATTGG
Found at i:47621817 original size:29 final size:28
Alignment explanation
Indices: 47621784--47621865 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 28
47621774 GTAAGTAGCT
* *
47621784 AATTGAGCGAAGAAGAAAACCATGGAGTG
1 AATTGAG-GAAGGAGAAAATCATGGAGTG
47621813 AATTGAGGGAAGGAGAAAATCATGGAGTG
1 AATTGA-GGAAGGAGAAAATCATGGAGTG
47621842 AATTGAGGAAAGGAGAAAATCATG
1 AATTGAGG-AAGGAGAAAATCATG
47621866 CCATTTTCAT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
28 2 0.04
29 46 0.94
30 1 0.02
ACGTcount: A:0.45, C:0.06, G:0.33, T:0.16
Consensus pattern (28 bp):
AATTGAGGAAGGAGAAAATCATGGAGTG
Found at i:47623011 original size:17 final size:16
Alignment explanation
Indices: 47622987--47623030 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
47622977 GATAATAATG
47622987 AAAATGAAAATAAATA
1 AAAATGAAAATAAATA
* *
47623003 AATAATGAATATAATTA
1 AA-AATGAAAATAAATA
47623020 AAAATGTAAAA
1 AAAATG-AAAA
47623031 AGATATATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (16 bp):
AAAATGAAAATAAATA
Found at i:47623303 original size:3 final size:3
Alignment explanation
Indices: 47623295--47623328 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
47623285 AAGATGAAAC
*
47623295 TAA TAA TAA TTAA TAG TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA
47623329 CACTAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:47624990 original size:44 final size:44
Alignment explanation
Indices: 47624872--47625675 Score: 357
Period size: 44 Copynumber: 18.4 Consensus size: 44
47624862 CACTCTACTT
* * * * * *
47624872 CAACTTCAGAGAGATAAGATCT-ATTACTTTAATCCGCTCCACTA
1 CAACTTCAGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* * * ** *
47624916 CAACCTCAGGGTGATAGGATTAT-CGACTTCAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATT-TGCTTCTTCAATCTGCTCCACTG
* *
47624960 CAACCTCAGGGAGATAAGATTTGCTTCTTCAGTCTGC-CTCACTG
1 CAACTTCAGGGAGATAAGATTTGCTTCTTCAATCTGCTC-CACTG
** * * *
47625004 TGACTTCAAGGG-GATAAGACTTG-TTTTCTCAGTCTGCTCCACTG
1 CAACTTC-AGGGAGATAAGATTTGCTTCT-TCAATCTGCTCCACTG
* ** * * * *
47625048 CAACCTCAGGGAGATAAGACCTGATGCGATCCA-CT-CT--ACTG
1 CAACTTCAGGGAGATAAGATTTGCTTC-TTCAATCTGCTCCACTG
* * * * * * * *
47625089 TAACTTCAGAGAGATAAGATCT-ATTACTTTAATCCGCTTCACTA
1 CAACTTCAGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* * ** * *
47625133 CAACTTTAGGGAGATAGGATTAT-CGGCTTCAATCTACTCCACTA
1 CAACTTCAGGGAGATAAGATT-TGCTTCTTCAATCTGCTCCACTG
* * * *
47625177 TAACTTCAGGGAGATAAGATTTGTCATCTTCGATCTGCCCCACTG
1 CAACTTCAGGGAGATAAGATTTG-CTTCTTCAATCTGCTCCACTG
* ** * *
47625222 CAACTTCAGGGTGATAAGACCTGCTTACTT-AGTCTGCTCCGCTG
1 CAACTTCAGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* * * * * *
47625266 CAACTTTAGGGAGATAAGACTTGATGCGATCCA-CT-CT--ACTG
1 CAACTTCAGGGAGATAAGATTTGCTTC-TTCAATCTGCTCCACTG
* * * * * * *
47625307 CAACTTCAGAGAGATAATATCT-ATTACTTTAATCCGCTCCACTA
1 CAACTTCAGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* **
47625351 CAACTTCAGGGAGATAGGATTAT-CGGCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATT-TGCTTCTTCAATCTGCTCCACTG
* * * * * * *
47625395 TAACATCAGGGAAATCAGATTTGTCATCTTCGATCTGCCCCACTG
1 CAACTTCAGGGAGATAAGATTTG-CTTCTTCAATCTGCTCCACTG
** * *
47625440 CAACTTCAAGGG-GATAAGACCTGCTTACTT-AGTCTGCTCCGCTG
1 CAACTTC-AGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* * * * * *
47625484 CAACTTTAGGGAGATAAGACTTGATGCGATCCA-CT-CT--ACTG
1 CAACTTCAGGGAGATAAGATTTGCTTC-TTCAATCTGCTCCACTG
* * * * * *
47625525 CAACTTCAGAGAGATAAGATCT-ATTACTTTAATCCGCTCCACTA
1 CAACTTCAGGGAGATAAGATTTGCTT-CTTCAATCTGCTCCACTG
* **
47625569 CAACTTCAGGGAGATAGGATTAT-CGACTTCAATCTGCTCC-CTG
1 CAACTTCAGGGAGATAAGATT-TGCTTCTTCAATCTGCTCCACTG
* * * * *
47625612 CAACCTCAGGGAGACAAGATTTGCTTTCTTCGATCAGCCCCACTG
1 CAACTTCAGGGAGATAAGATTTGC-TTCTTCAATCTGCTCCACTG
* *
47625657 CAACTTTAGGGGGATAAGA
1 CAACTTCAGGGAGATAAGA
47625676 CCTGCTTAAT
Statistics
Matches: 557, Mismatches: 161, Indels: 83
0.70 0.20 0.10
Matches are distributed among these distances:
40 12 0.02
41 69 0.12
42 7 0.01
43 44 0.08
44 322 0.58
45 99 0.18
46 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTTGCTTCTTCAATCTGCTCCACTG
Found at i:47625343 original size:218 final size:217
Alignment explanation
Indices: 47624847--47625683 Score: 1293
Period size: 218 Copynumber: 3.8 Consensus size: 217
47624837 CTAGTCGGCC
*
47624847 AGACTTGATGCGATCCACTCTACTTCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* *
47624912 ACTACAACCTCAGGGTGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
66 ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
* * ** * * * *
47624977 GATTTGCTTCTTC-AGTCTGCCTCACTGTGACTTCAAGGGGATAAGACTTGTTTTCTCAGTCTGC
131 GATTTGCATCTTCGA-TCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTTAGTCTGC
* * *
47625041 TCCACTGCAACCTCAGGGAGATA
195 TCCGCTGCAACTTTAGGGAGATA
* * *
47625064 AGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTTC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* * ** *
47625129 ACTACAACTTTAGGGAGATAGGATTATCGGCTTCAATCTACTCCACTATAACTTCAGGGAGATAA
66 ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
47625194 GATTTGTCATCTTCGATCTGCCCCACTGCAACTTC-AGGGTGATAAGACCTGCTTACTTAGTCTG
131 GATTTG-CATCTTCGATCTGCCCCACTGCAACTTCAAGGG-GATAAGACCTGCTTACTTAGTCTG
47625258 CTCCGCTGCAACTTTAGGGAGATA
194 CTCCGCTGCAACTTTAGGGAGATA
*
47625282 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAATATCTATTACTTTAATCCGCTCC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* * * * * *
47625347 ACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACATCAGGGAAATCA
66 ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
47625412 GATTTGTCATCTTCGATCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTTAGTCTGC
131 GATTTG-CATCTTCGATCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTTAGTCTGC
47625477 TCCGCTGCAACTTTAGGGAGATA
195 TCCGCTGCAACTTTAGGGAGATA
47625500 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* *
47625565 ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTGCTCC-CTGCAACCTCAGGGAGACAA
66 ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
* * * *
47625629 GATTTGCTTTCTTCGATCAGCCCCACTGCAACTTTAGGGGGATAAGACCTGCTTA
131 GATTTGC-ATCTTCGATCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTA
47625684 ATAAACTGAA
Statistics
Matches: 572, Mismatches: 43, Indels: 10
0.92 0.07 0.02
Matches are distributed among these distances:
216 1 0.00
217 193 0.34
218 373 0.65
219 5 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (217 bp):
AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
ACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
GATTTGCATCTTCGATCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTTAGTCTGCT
CCGCTGCAACTTTAGGGAGATA
Found at i:47625657 original size:435 final size:435
Alignment explanation
Indices: 47624847--47625683 Score: 1311
Period size: 435 Copynumber: 1.9 Consensus size: 435
47624837 CTAGTCGGCC
*
47624847 AGACTTGATGCGATCCACTCTACTTCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* * *
47624912 ACTACAACCTCAGGGTGATAGGATTATCGACTTCAATCTACTCCACTGCAACCTCAGGGAGATAA
66 ACTACAACCTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACATCAGGGAAATAA
* * ** * * *
47624977 GATTTGCTTCTTCAGTCTGCCTCACTGTGACTTCAAGGGGATAAGACTTGTTTTCTCAGTCTGCT
131 GATTTGCATCTTCAGTCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTCAGTCTGCT
*
47625042 CCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGTAACTTCAGAGAGATAAG
196 CCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAG
* * *
47625107 ATCTATTACTTTAATCCGCTTCACTACAACTTTAGGGAGATAGGATTATCGGCTTCAATCTACTC
261 ATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTC
* * * * *
47625172 CACTATAACTTCAGGGAGATAAGATTTGTCATCTTCGATCTGCCCCACTGCAACTTCAGGGTGAT
326 CACTACAACCTCAGGGAGACAAGATTTGTCATCTTCGATCAGCCCCACTGCAACTTCAGGGGGAT
47625237 AAGACCTGCTTACTTAGTCTGCTCCGCTGCAACTTTAGGGAGATA
391 AAGACCTGCTTACTTAGTCTGCTCCGCTGCAACTTTAGGGAGATA
*
47625282 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAATATCTATTACTTTAATCCGCTCC
1 AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
* * * * *
47625347 ACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATCTGCTCCACTGTAACATCAGGGAAATCA
66 ACTACAACCTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACATCAGGGAAATAA
*
47625412 GATTTGTCATCTTC-GATCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTTAGTCTG
131 GATTTG-CATCTTCAG-TCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTCAGTCTG
* * * *
47625476 CTCCGCTGCAACTTTAGGGAGATAAGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATA
194 CTCCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATA
*
47625541 AGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTGC
259 AGATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTAC
* * *
47625606 TCC-CTGCAACCTCAGGGAGACAAGATTTG-CTTTCTTCGATCAGCCCCACTGCAACTTTAGGGG
324 TCCACTACAACCTCAGGGAGACAAGATTTGTC-ATCTTCGATCAGCCCCACTGCAACTTCAGGGG
47625669 GATAAGACCTGCTTA
388 GATAAGACCTGCTTA
47625684 ATAAACTGAA
Statistics
Matches: 364, Mismatches: 35, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
434 1 0.00
435 192 0.53
436 171 0.47
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (435 bp):
AGACTTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCC
ACTACAACCTCAGGGAGATAGGATTATCGACTTCAATCTACTCCACTGCAACATCAGGGAAATAA
GATTTGCATCTTCAGTCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTCAGTCTGCT
CCACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAG
ATCTATTACTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATCGACTTCAATCTACTC
CACTACAACCTCAGGGAGACAAGATTTGTCATCTTCGATCAGCCCCACTGCAACTTCAGGGGGAT
AAGACCTGCTTACTTAGTCTGCTCCGCTGCAACTTTAGGGAGATA
Found at i:47627772 original size:16 final size:17
Alignment explanation
Indices: 47627739--47627772 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
47627729 ATATTATGAA
47627739 AATAAAACTAGAATAAT
1 AATAAAACTAGAATAAT
47627756 AATAAAACTAG-ATAAT
1 AATAAAACTAGAATAAT
47627772 A
1 A
47627773 TTCTAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
AATAAAACTAGAATAAT
Found at i:47631228 original size:23 final size:22
Alignment explanation
Indices: 47631176--47631228 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
47631166 TTCACGTCTT
*
47631176 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
47631198 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
47631221 TTTCTTTT
1 TTTCTTTT
47631229 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:47633845 original size:13 final size:13
Alignment explanation
Indices: 47633827--47633851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47633817 ATTGGACTTT
47633827 GAATTTATATTTG
1 GAATTTATATTTG
47633840 GAATTTATATTT
1 GAATTTATATTT
47633852 ATTTATGCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
GAATTTATATTTG
Found at i:47636385 original size:29 final size:29
Alignment explanation
Indices: 47636345--47636501 Score: 181
Period size: 29 Copynumber: 5.4 Consensus size: 29
47636335 TCATCGACCA
* * *
47636345 ATGAAAGGGGATAGTTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGATT
* * * * *
47636374 ATGAAAAGGGAT-GGTGACGACCATCAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGATT
47636403 ATGAAAAGGGATAGCTTCGACTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGATT
* * *
47636432 ATGAAACGGGATAGCTTCAACTAGCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGATT
* *
47636461 ATGAAAAGGGATAGCTCCAACTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGATT
47636490 ATGAAAAGGGAT
1 ATGAAAAGGGAT
47636502 GGTGACGACC
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 2 0.02
29 104 0.96
30 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCGATT
Found at i:47636414 original size:58 final size:58
Alignment explanation
Indices: 47636345--47636588 Score: 231
Period size: 58 Copynumber: 4.2 Consensus size: 58
47636335 TCATCGACCA
* * *
47636345 ATGAAAGGGGATAGTTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATCAAAT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAAAT
* * * * * * * *
47636403 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAACGGGATAGCT-TCAACTAGCGATT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGAT-GGTGACGACCATCAAAT
* * *
47636461 ATGAAAAGGGATAGCTCCAACTATCGATTATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAAAT
* * * * * * *** *
47636519 ATCAAAAGGAAT-GGTGACGACCATCGATTAATGAAAAAGGATGGTTTTGACCATCGAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGATT-ATGAAAAGGGATGGTGACGACCATCAAAT
47636578 ATGAAAAGGGA
1 ATGAAAAGGGA
47636589 CGGTTACGAC
Statistics
Matches: 147, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
57 4 0.03
58 109 0.74
59 34 0.23
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGACGACCATCAAAT
Found at i:47636525 original size:29 final size:28
Alignment explanation
Indices: 47636489--47636603 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
47636479 AACTATCGAT
47636489 TATGAAAAGGGATGGTGACGACCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
* * *
47636517 CTATCAAAAGGAATGGTGACGACCATCGAT
1 -TATGAAAAGGGATGGTGACGACCATC-AA
* ***
47636547 TAATGAAAAAGGATGGTTTTGACCATCGAA
1 T-ATGAAAAGGGATGGTGACGACCATC-AA
* *
47636577 TATGAAAAGGGACGGTTACGACCATCA
1 TATGAAAAGGGATGGTGACGACCATCA
47636604 TTTAGCACAC
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
28 1 0.01
29 46 0.66
30 23 0.33
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.21
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGACCATCAA
Found at i:47636598 original size:59 final size:58
Alignment explanation
Indices: 47636483--47636602 Score: 143
Period size: 59 Copynumber: 2.1 Consensus size: 58
47636473 AGCTCCAACT
* *
47636483 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATCAAAAGGAATGGTGACGACC
1 ATCGATTATGAAAAAGGATGGTGACGACCATCAACTATCAAAAGGAACGGTGACGACC
*** * * *
47636541 ATCGATTAATGAAAAAGGATGGTTTTGACCATCGAA-TATGAAAAGGGACGGTTACGACC
1 ATCGATT-ATGAAAAAGGATGGTGACGACCATC-AACTATCAAAAGGAACGGTGACGACC
47636600 ATC
1 ATC
47636603 ATTTAGCACA
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
58 7 0.13
59 43 0.83
60 2 0.04
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (58 bp):
ATCGATTATGAAAAAGGATGGTGACGACCATCAACTATCAAAAGGAACGGTGACGACC
Found at i:47640540 original size:13 final size:13
Alignment explanation
Indices: 47640501--47640552 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
47640491 TTTAAATTTG
47640501 TTGTTCATTTTGATA
1 TTGTTCATTTT--TA
* *
47640516 TTGTTTAGTTTTA
1 TTGTTCATTTTTA
47640529 TTGTTCATTTTTA
1 TTGTTCATTTTTA
*
47640542 -TATTCATTTTT
1 TTGTTCATTTTT
47640553 GTTAATTAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
12 10 0.31
13 13 0.41
15 9 0.28
ACGTcount: A:0.17, C:0.06, G:0.10, T:0.67
Consensus pattern (13 bp):
TTGTTCATTTTTA
Found at i:47643988 original size:26 final size:22
Alignment explanation
Indices: 47643959--47644011 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
47643949 AAATTATTAA
47643959 ATATATGAAAAAATAGAAATATGT
1 ATATAT-AAAAAATA-AAATATGT
*
47643983 ATATATAAAAATTAAAATATGT
1 ATATATAAAAAATAAAATATGT
*
47644005 ATGTATA
1 ATATATA
47644012 TAGGTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 14 0.52
23 7 0.26
24 6 0.22
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (22 bp):
ATATATAAAAAATAAAATATGT
Found at i:47644435 original size:3 final size:3
Alignment explanation
Indices: 47644427--47644488 Score: 81
Period size: 3 Copynumber: 20.0 Consensus size: 3
47644417 ATATGTAAGT
*
47644427 ATA ATA ATA ATA GTA AGTA AT- ATA ATA ATA ATTA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA A-TA ATA ATA ATA ATA
47644473 ATA ATA ATA AGTA ATA
1 ATA ATA ATA A-TA ATA
47644489 GTAGCAACGA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
2 2 0.04
3 42 0.79
4 9 0.17
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:47645938 original size:89 final size:88
Alignment explanation
Indices: 47645798--47647132 Score: 1292
Period size: 89 Copynumber: 15.0 Consensus size: 88
47645788 ATAAGACTTG
* * ** * * *
47645798 TATCTTCGATCTACTTCGCCACCAATATGGGAAGACAATATCTACTATCTTTGATTTACTTCATT
1 TATCTTCGATCTACTTC-ACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-T
*
47645863 GCCAGTACATGAAGACAAGATTTGC
64 GCCAGTACATGAAGACAAGATCTGC
* * *
47645888 TTTCTTCGATCTACTTCACGCCAATATATG-AGTACAAGATCTGCTATCTTTGATCTACTTCACT
1 TATCTTCGATCTACTTCACGCCAATACAGGAAG-ACAAGATCTGCTATCTTTGATCTACTTCA-T
* *
47645952 GCCAGTACAGGAAGACAAGATCTGT
64 GCCAGTACATGAAGACAAGATCTGC
* *
47645977 TATCTTTGATCTACTTCACTG-CAAGTACAAGAAGACAAGATCTGCTATCTTTGATCTACTTCAT
1 TATCTTCGATCTACTTCAC-GCCAA-TACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCAT
* * *
47646041 GCCAATACGTGGAGACAAGATCTGC
64 GCCAGTACATGAAGACAAGATCTGC
* * * * *
47646066 TATCTTCGATCTACTTCATGCCAATATATGAAGATAAGATCTGCTATCCTCTGATCTACTTCATG
1 TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTAT-CTTTGATCTACTTCATG
* *
47646131 CTAGTACATGGAGACAAGATCTGC
65 CCAGTACATGAAGACAAGATCTGC
* * * * * *
47646155 TTTGTTTGATCTAC-TC-CGCCACCAGTACGGGAAGATAAGATCTACTATCTTTGATCTACTTCA
1 TATCTTCGATCTACTTCACGCCA--A-TACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA
*
47646218 TGCCAATACATGAAGACAAGATCTGC
63 TGCCAGTACATGAAGACAAGATCTGC
* * * * * ** * * *
47646244 TTTATTTGATCTACTTCGCTGCCAGTACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCACC
1 TATCTTCGATCTACTTCAC-GCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-T
* ***
47646309 ACCAGTATGGGAAGACAAGATCTGC
64 GCCAGTACATGAAGACAAGATCTGC
* * ** * ** **
47646334 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTATTTTCTTCAATCTACTTCACCA
1 TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-TG
* *** *
47646399 CCAATATGGGATGACAAGATCTGC
65 CCAGTACATGAAGACAAGATCTGC
* * * * * *
47646423 TATCTTTGATCTACTTCACCCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGC
1 TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
* * *
47646488 CAATATATGAATACAAGATCTGC
66 CAGTACATGAAGACAAGATCTGC
* * * *
47646511 TATCTTTGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTGTTATCTTTGATCTATTTCACT
1 TATCTTCGATCTACTTCAC-GCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-T
*
47646576 GCCAGTACAGGAAGACAAGATCTGC
64 GCCAGTACATGAAGACAAGATCTGC
* * **
47646601 TATGTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACAC
1 TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
* *
47646666 CAATACATGAAGACAAGATCTAC
66 CAGTACATGAAGACAAGATCTGC
* * * * * * * * **
47646689 AATCCTCTGATCTACTTCATGCTAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
1 TATCTTC-GATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTC-AT
* ***
47646754 ACCAGTATGGGAAGACAAGATCTGC
64 GCCAGTACATGAAGACAAGATCTGC
** * * * * * *
47646779 TATCTTTAATCTGCTTCATGCCAATACATGAAGACAAGATCTGCTTTATTTGATCTACTTCGCTG
1 TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTC-ATG
* * **
47646844 CCAGTACAAGAAGACAAGATTTAT
65 CCAGTACATGAAGACAAGATCTGC
* * * * **
47646868 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATG
1 TATCTTCGATCTACTTC-ACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATG
*
47646933 CCAATACATGAAGACAAGATCTGC
65 CCAGTACATGAAGACAAGATCTGC
* * ** * * **
47646957 TATCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATTTGCTATCTTCGATCTACTTCACA
1 TATCTTCGATCTACTTCA-CGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATG
*
47647022 CCAATACATGAAGACAAGATCTGC
65 CCAGTACATGAAGACAAGATCTGC
* * ** *
47647046 TATCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATTTGCTATCTTTGATCTACTTCACT
1 TATCTTCGATCTACTTCA-CGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-T
*
47647111 GCCAGTACAGGAAGACAAGATC
64 GCCAGTACATGAAGACAAGATC
47647133 CGTTGCCTTT
Statistics
Matches: 1069, Mismatches: 156, Indels: 40
0.85 0.12 0.03
Matches are distributed among these distances:
87 4 0.00
88 90 0.08
89 744 0.70
90 224 0.21
91 3 0.00
92 4 0.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (88 bp):
TATCTTCGATCTACTTCACGCCAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
CAGTACATGAAGACAAGATCTGC
Found at i:47646004 original size:134 final size:133
Alignment explanation
Indices: 47645798--47647132 Score: 1374
Period size: 134 Copynumber: 10.0 Consensus size: 133
47645788 ATAAGACTTG
* * *** * * * *
47645798 TATCTTCGATCTACTTCGCCACCAATATGGGAAGACAATATCTACTATCTTTGATTTACTTCATT
1 TATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACT
* * * * * * *
47645863 GCCAGTACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCACGCCAATATATG-AGTACAAGA
65 GCAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAGGAAG-ACAAGA
47645927 TCTGC
129 TCTGC
* * * *
47645932 TATCTTTGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTGTTATCTTTGATCTACTTCACT
1 TATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACT
* * * *
47645997 GCAAGTACAAGAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATAC-GTGGAGACAAGA
65 GCAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAG-GAAGACAAGA
47646061 TCTGC
129 TCTGC
* * * *
47646066 TATCTTCGATCTACTTCATGCCAATATATGAAGATAAGATCTGCTATCCTCTGATCTACTTCA-T
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTAT-CTTTGATCTACTTCACT
* * * * * * * * *
47646130 GCTAGTACATGGAGACAAGATCTGCTTTGTTTGATCTACTCCGCCACCAGTACGGGAAGATAAGA
65 GCAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAGTACAGGAAGACAAGA
*
47646195 TCTAC
129 TCTGC
* * * * *
47646200 TATCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTATTTGATCTACTTCGCTG
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACTG
* * ** * * * **
47646265 CCAGTACAGGAAGACAAGATCTATTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGAT
66 CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCA-CGCCAGTACAGGAAGACAAGAT
47646330 CTGC
130 CTGC
* ** * ** *
47646334 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTATTTTCTTCAATCTACTTCACCA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCA-CT
* *** * * * *
47646399 CCAA-TATGGGATGACAAGATCTGCTATCTTTGATCTACTTCACCCCAATACATGAAGACAAGAT
65 GCAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAGGAAGACAAGAT
47646463 CTGC
130 CTGC
* * *
47646467 TTTCTTCGATCTACTTCACGCCAATATATGAATACAAGATCTGCTATCTTTGATCTACTTCACTG
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACTG
* * * *
47646532 CCAGTACAGGAAGACAAGATCTGTTATCTTTGATCTATTTCACTGCCAGTACAGGAAGACAAGAT
66 CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAGTACAGGAAGACAAGAT
47646597 CTGC
130 CTGC
* **
47646601 TATGTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACAC
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACTG
* * * * * *
47646666 CAA-TACATGAAGACAAGATCTACAATCCTCTGATCTACTTCATGCTAGTACATGAAGACAAGAT
66 CAAGTACATGAAGACAAGATCTGCTAT-CTTTGATCTACTTCACGCCAGTACAGGAAGACAAGAT
47646730 CTGC
130 CTGC
* * * * *** * *
47646734 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTAATCTGCTTCA-T
1 TATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACT
* * * *
47646798 GCCAA-TACATGAAGACAAGATCTGCTTTATTTGATCTACTTCGCTGCCAGTACAAGAAGACAAG
65 G-CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAGTACAGGAAGACAAG
* **
47646862 ATTTAT
128 ATCTGC
* * * * ***
47646868 TTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCA-T
1 TATCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACT
* * **
47646932 GCCAA-TACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
65 G-CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCA-CGCCAGTACAGGAAGACAAG
*
47646996 ATTTGC
128 ATCTGC
* * **
47647002 TATCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACCA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACTG
* *** *
47647067 CCAGTATGGGAAGACAAGATTTGCTATCTTTGATCTACTTCACTGCCAGTACAGGAAGACAAGAT
66 CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCAC-GCCAGTACAGGAAGACAAGAT
47647132 C
130 C
47647133 CGTTGCCTTT
Statistics
Matches: 1010, Mismatches: 172, Indels: 38
0.83 0.14 0.03
Matches are distributed among these distances:
132 3 0.00
133 292 0.29
134 708 0.70
135 7 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (133 bp):
TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACTG
CAAGTACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACAGGAAGACAAGATC
TGC
Done.