Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 160 of 213
Found at i:47940242 original size:22 final size:22
Alignment explanation
Indices: 47940107--47940272 Score: 100
Period size: 22 Copynumber: 7.8 Consensus size: 22
47940097 TATATCGAAG
* *
47940107 CATATCTTATATCATATCATAT
1 CATATCTCATATCATATCACAT
*
47940129 CATA--TCATATCATATCATAT
1 CATATCTCATATCATATCACAT
*
47940149 CATA--TCATATCATATCATAT
1 CATATCTCATATCATATCACAT
* * *
47940169 --TATATCATATCGAATTTCATAT
1 CATATCTCATATC--ATATCACAT
* * * *
47940191 CATGTCGT-AGCA-CATTTCATAT
1 CATATC-TCA-TATCATATCACAT
47940213 CATATCTCATATCATATCACAT
1 CATATCTCATATCATATCACAT
* * *
47940235 TATATCTCTTATCATATCATAT
1 CATATCTCATATCATATCACAT
47940257 CATA--TCATATCATATC
1 CATATCTCATATCATATC
47940273 CTATCTCATC
Statistics
Matches: 120, Mismatches: 14, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
18 2 0.02
20 53 0.44
21 2 0.02
22 57 0.47
24 4 0.03
25 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.42
Consensus pattern (22 bp):
CATATCTCATATCATATCACAT
Found at i:47944645 original size:44 final size:45
Alignment explanation
Indices: 47944595--47944884 Score: 232
Period size: 44 Copynumber: 6.7 Consensus size: 45
47944585 ATCTGCTATT
* ** *
47944595 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGGGTTCACGATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGAATTCACAATC
**
47944639 TTCAACCTATTCCACTACTGAC-CAGGGAGATAAGACCT-ACAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGAT-AGAATTCACAATC
* * * *
47944683 TTCAATCTATTCCACTGCTG-CCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGAATTCACAATC
* *
47944727 TTCAACCTATTCCACTATTGACT-AGGGAGATA-AGATTCACGATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGA-ATTCACAATC
* ** * * *
47944771 TTTAACCTATTCCACTGTTGTC-CAAGGAGATAGGATT--C--T-
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGAATTCACAATC
* * * * *
47944810 TT-AATCTATTCCACTGCAG-CCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTACTGACTCAGGGAGATAGAATTCACAATC
* *
47944853 TTCAACCTATTCCACTTCTGAC-CAAGGAGATA
1 TTCAACCTATTCCACTACTGACTCAGGGAGATA
47944885 AGGCTGGTAT
Statistics
Matches: 200, Mismatches: 30, Indels: 32
0.76 0.11 0.12
Matches are distributed among these distances:
37 1 0.00
38 27 0.14
39 2 0.01
40 2 0.01
42 2 0.01
43 8 0.04
44 152 0.76
45 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
TTCAACCTATTCCACTACTGACTCAGGGAGATAGAATTCACAATC
Found at i:47944709 original size:88 final size:88
Alignment explanation
Indices: 47944595--47944884 Score: 281
Period size: 88 Copynumber: 3.4 Consensus size: 88
47944585 ATCTGCTATT
* * * * *
47944595 TTCAACCTACTCCACTACTGCTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA
47944660 CCAGGGAGATAAGAC-CTACAATC
66 CCAGGGAGATAAGACTC-ACAATC
* * * *
47944683 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTATTGA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA
* * *
47944748 CTAGGGAGATAAGATTCACGATC
66 CCAGGGAGATAAGACTCACAATC
* * * * * * * *
47944771 TTTAACCTATTCCACTGTTGTCCAAGGAGATAGGATT--C--T-TT-AATCTATTCCACTGCAGC
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA
* *
47944830 CCAGGGAGAT-AGAATTCTCAATC
66 CCAGGGAGATAAG-ACTCACAATC
* * *
47944853 TTCAACCTATTCCACTTCTGACCAAGGAGATA
1 TTCAACCTATTCCACTGCTGCCCAGGGAGATA
47944885 AGGCTGGTAT
Statistics
Matches: 170, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
81 2 0.01
82 58 0.34
83 2 0.01
84 1 0.01
86 1 0.01
88 105 0.62
89 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (88 bp):
TTCAACCTATTCCACTGCTGCCCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA
CCAGGGAGATAAGACTCACAATC
Found at i:47944838 original size:38 final size:38
Alignment explanation
Indices: 47944769--47944847 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 38
47944759 AGATTCACGA
** * *
47944769 TCTTTAACCTATTCCACTGTTGTCCAAGGAGATAGGAT
1 TCTTTAACCTATTCCACTGCAGCCCAAGGAGATAGAAT
* *
47944807 TCTTTAATCTATTCCACTGCAGCCCAGGGAGATAGAAT
1 TCTTTAACCTATTCCACTGCAGCCCAAGGAGATAGAAT
47944845 TCT
1 TCT
47944848 CAATCTTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (38 bp):
TCTTTAACCTATTCCACTGCAGCCCAAGGAGATAGAAT
Found at i:47944867 original size:126 final size:128
Alignment explanation
Indices: 47944595--47944886 Score: 376
Period size: 126 Copynumber: 2.3 Consensus size: 128
47944585 ATCTGCTATT
* * * *
47944595 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGGGTTCACGATCTTCAACCTATTCCACTACTG
1 TTCAACCTATTCCACTATTGACT-AGGGAGATAAGATTCACGATCTTCAACCTATTCCACTACTG
* *
47944659 ACCAGGGAGATAAGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCA
65 ACCAAGGAGATAAGA-CT---ATCTTCAATCTATTCCACTGCAGCCCAGGGAGATAGAATTCTCA
47944724 ATC
126 ATC
* ** *
47944727 TTCAACCTATTCCACTATTGACTAGGGAGATAAGATTCACGATCTTTAACCTATTCCACTGTTGT
1 TTCAACCTATTCCACTATTGACTAGGGAGATAAGATTCACGATCTTCAACCTATTCCACTACTGA
* *
47944792 CCAAGGAGATAGGA-T-TCTTTAATCTATTCCACTGCAGCCCAGGGAGATAGAATTCTCAATC
66 CCAAGGAGATAAGACTATCTTCAATCTATTCCACTGCAGCCCAGGGAGATAGAATTCTCAATC
* *
47944853 TTCAACCTATTCCACT-TCTGACCAAGGAGATAAG
1 TTCAACCTATTCCACTAT-TGACTAGGGAGATAAG
47944887 GCTGGTATCT
Statistics
Matches: 144, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
125 1 0.01
126 74 0.51
130 1 0.01
132 66 0.46
133 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (128 bp):
TTCAACCTATTCCACTATTGACTAGGGAGATAAGATTCACGATCTTCAACCTATTCCACTACTGA
CCAAGGAGATAAGACTATCTTCAATCTATTCCACTGCAGCCCAGGGAGATAGAATTCTCAATC
Found at i:47944999 original size:88 final size:88
Alignment explanation
Indices: 47944884--47945384 Score: 696
Period size: 88 Copynumber: 5.7 Consensus size: 88
47944874 CCAAGGAGAT
* * *
47944884 AAGGCTGGTATCTTCGATTTGCTTCACTGTCGGTACAGGAAAGCAAGATCTGCTATCTTCAACTT
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
*
47944949 GCTCCACTACGACCCAGGGAGGC
66 GCTCCACTACAACCCAGGGAGGC
* * *
47944972 AAGGCTGGTATTTTTGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTACTATCTTCAACCT
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
* *
47945037 GCTCCACTACGACCCAGGCAGGC
66 GCTCCACTACAACCCAGGGAGGC
* * *
47945060 AAGGCCGGTATCTTCAATCTGCTTCATTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
* *
47945125 ACTCCACTACAACCCTGGGAGGC
66 GCTCCACTACAACCCAGGGAGGC
* *
47945148 AAGGCTGGTATCTTCGATCTACTTCACTGTCGGTACAGGAAGGCAAGATCTACTATCTTCAACCT
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
47945213 GCTCCACTACAACCCAGGGAGGC
66 GCTCCACTACAACCCAGGGAGGC
* * * * * * * * *
47945236 AAGACTGGTATCTTCGATCTGCTTCGCTGTTGATGCAGAAAGACAAAATTTGCTATCTTCAACCT
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
47945301 GCTCCACTACAACCCAGGGAGGC
66 GCTCCACTACAACCCAGGGAGGC
* * * ** * * * *
47945324 AAGGCTGGTGTCTTTGATCTGTTTTGCTGCCAGTACAGGAAGGCAGGATCTGTTATCTTCA
1 AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCA
47945385 CTGATCTACT
Statistics
Matches: 362, Mismatches: 51, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 362 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (88 bp):
AAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACCT
GCTCCACTACAACCCAGGGAGGC
Found at i:47945060 original size:44 final size:44
Alignment explanation
Indices: 47944919--47945326 Score: 230
Period size: 44 Copynumber: 9.3 Consensus size: 44
47944909 ACTGTCGGTA
* *
47944919 CAGGAAAGCAAGATCTGCTATCTTCAACTTGCTCCACTACGACC
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
* * * * ** * * * ***
47944963 CAGGGAGGCAAG-GCTGGTATTTTTGATCTGCTTCACTGTCGGTA
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACC
*
47945007 CAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACGACC
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
* * * * * * * * ***
47945051 CAGGCAGGCAAG-GCCGGTATCTTCAATCTGCTTCATTGTCGGTA
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACC
* *
47945095 CAGGAAGGCAAGATCTGCTATCTTCAACCTACTCCACTACAACC
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
* * * * * * * * * ***
47945139 CTGGGAGGCAAG-GCTGGTATCTTCGATCTACTTCACTGTCGGTA
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACC
* *
47945183 CAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACC
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
* * * * * * ** **
47945227 CAGGGAGGCAAGA-CTGGTATCTTCGATCTGCTTCGCTGTTGATG
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACGACC
* * * * *
47945271 CAGAAAGACAAAATTTGCTATCTTCAACCTGCTCCACTACAACC
1 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
*
47945315 CAGGGAGGCAAG
1 CAGGAAGGCAAG
47945327 GCTGGTGTCT
Statistics
Matches: 247, Mismatches: 109, Indels: 16
0.66 0.29 0.04
Matches are distributed among these distances:
43 73 0.30
44 103 0.42
45 71 0.29
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACC
Found at i:47946665 original size:17 final size:16
Alignment explanation
Indices: 47946629--47946664 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
47946619 GGCCTCTCTA
47946629 TTTTCTTTCTTCTTTT
1 TTTTCTTTCTTCTTTT
47946645 TTTTCTTT-TCTCTTTT
1 TTTTCTTTCT-TCTTTT
47946661 TTTT
1 TTTT
47946665 TTTGAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.05
16 18 0.95
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTCTTTCTTCTTTT
Found at i:47950605 original size:3 final size:3
Alignment explanation
Indices: 47950597--47950634 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
47950587 AACAAAAATA
47950597 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
47950635 ACATCCTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:47956014 original size:6 final size:6
Alignment explanation
Indices: 47956005--47956059 Score: 96
Period size: 6 Copynumber: 9.5 Consensus size: 6
47955995 TTTTGATAGA
47956005 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG -TTTAG
1 TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTAG
47956052 -TTTAG TTT
1 TTTTAG TTT
47956060 GTTTTTCTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 10 0.21
6 38 0.79
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (6 bp):
TTTTAG
Found at i:47962804 original size:59 final size:56
Alignment explanation
Indices: 47962732--47962882 Score: 196
Period size: 59 Copynumber: 2.6 Consensus size: 56
47962722 CTGCTAGTTG
47962732 TTTTATACTTAAGAAAATTTTGAAAGATAACACA-AATGGGAATGTTACTCCAAGAGCTA
1 TTTTATACTTAAGAAAATTTTGAAA-ATAACACACAA-GGG-ATGTTACTCCAAGAG-TA
* ** *
47962791 TTTTATACTTAAGAAAATTTTGACAAATAACACAGCCAGGGATGTTACTCCGTGAGTT
1 TTTTATACTTAAGAAAATTTTGA-AAATAACACA-CAAGGGATGTTACTCCAAGAGTA
47962849 TTTTATACTTAAGAAAATTTTGAAATATAACACA
1 TTTTATACTTAAGAAAATTTTGAAA-ATAACACA
47962883 GCTGAGAGTT
Statistics
Matches: 84, Mismatches: 4, Indels: 9
0.87 0.04 0.09
Matches are distributed among these distances:
57 2 0.02
58 32 0.38
59 44 0.52
60 5 0.06
61 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (56 bp):
TTTTATACTTAAGAAAATTTTGAAAATAACACACAAGGGATGTTACTCCAAGAGTA
Found at i:47962879 original size:58 final size:57
Alignment explanation
Indices: 47962678--47962884 Score: 222
Period size: 58 Copynumber: 3.6 Consensus size: 57
47962668 AAGCTGTTTC
* * * * * * *
47962678 ATACTTAAGAAAATCTCGAAAGATAATATAGCTGAGATGTTACTCTGCT-AGTTGTTTT
1 ATACTTAAGAAAATTTTGAAAGATAACACAGCAGGGATGTTACTCCG-TGAGTT-TTTT
* ** *
47962736 ATACTTAAGAAAATTTTGAAAGATAACACA-AATGGGAATGTTACTCCAAGAGCTATTTT
1 ATACTTAAGAAAATTTTGAAAGATAACACAGCA-GGG-ATGTTACTCCGTGAG-TTTTTT
47962795 ATACTTAAGAAAATTTTGACAA-ATAACACAGCCAGGGATGTTACTCCGTGAGTTTTTT
1 ATACTTAAGAAAATTTTGA-AAGATAACACAG-CAGGGATGTTACTCCGTGAGTTTTTT
*
47962853 ATACTTAAGAAAATTTTGAAATATAACACAGC
1 ATACTTAAGAAAATTTTGAAAGATAACACAGC
47962885 TGAGAGTTTT
Statistics
Matches: 126, Mismatches: 15, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
57 3 0.02
58 61 0.48
59 55 0.44
60 6 0.05
61 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.32
Consensus pattern (57 bp):
ATACTTAAGAAAATTTTGAAAGATAACACAGCAGGGATGTTACTCCGTGAGTTTTTT
Found at i:47969837 original size:16 final size:15
Alignment explanation
Indices: 47969812--47969843 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
47969802 CTATTTCGTA
47969812 GATTGTTGGAAGCTT
1 GATTGTTGGAAGCTT
47969827 GATTAGTTGGAAGCTT
1 GATT-GTTGGAAGCTT
47969843 G
1 G
47969844 TCGAAGATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.22, C:0.06, G:0.34, T:0.38
Consensus pattern (15 bp):
GATTGTTGGAAGCTT
Found at i:47972805 original size:16 final size:16
Alignment explanation
Indices: 47972784--47972817 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
47972774 CGCGGCCTAT
47972784 CTGGTCCTTGAATGTC
1 CTGGTCCTTGAATGTC
47972800 CTGGTCCTTGAATGTC
1 CTGGTCCTTGAATGTC
47972816 CT
1 CT
47972818 ATTTACCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.38
Consensus pattern (16 bp):
CTGGTCCTTGAATGTC
Found at i:47974173 original size:20 final size:21
Alignment explanation
Indices: 47974136--47974174 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
47974126 TATTTACCTC
**
47974136 TAAAGTTAAAAGTCAAAACAT
1 TAAAGTTAAAAGGAAAAACAT
47974157 TAAA-TTAAAAGGAAAAAC
1 TAAAGTTAAAAGGAAAAAC
47974175 TACATCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (21 bp):
TAAAGTTAAAAGGAAAAACAT
Found at i:47977321 original size:27 final size:27
Alignment explanation
Indices: 47977290--47977467 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47977280 TAAATTGTAC
47977290 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47977317 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47977343 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47977371 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47977399 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47977426 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47977453 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47977468 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47977404 original size:82 final size:81
Alignment explanation
Indices: 47977291--47977446 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47977281 AAATTGTACA
* *
47977291 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
47977355 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47977372 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
47977437 TGCGAGTTGA
65 TGCGAATTGA
47977447 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47977458 original size:82 final size:81
Alignment explanation
Indices: 47977287--47977467 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
47977277 GATTAAATTG
* *
47977287 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
47977352 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
47977368 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
47977432 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
47977450 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47977468 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47980761 original size:20 final size:19
Alignment explanation
Indices: 47980738--47980776 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
47980728 ATATTTTACT
*
47980738 AAAATATTACAAAATCAATA
1 AAAAAATTACAAAAT-AATA
*
47980758 AAAAAATTCCAAAATAATA
1 AAAAAATTACAAAATAATA
47980777 TAACTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAAAATTACAAAATAATA
Found at i:47981138 original size:154 final size:151
Alignment explanation
Indices: 47980858--47981512 Score: 802
Period size: 154 Copynumber: 4.4 Consensus size: 151
47980848 CAATTGTTCG
* * **
47980858 TATTTTGGCCCTTTTTTCGTATTTTTTT--TGGATTTTATTAC-TTTAAAAAATATACTATTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAA-ATACTATTTTT
*
47980920 TAATTTT-TTAATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATTTTTT
65 TAATTTTATT-ATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATGTTTT
47980984 TTAAATAAATTTAAAAAAAAATC-T
129 TTAAATAAATTT--AAAAAAATCAT
* * *
47981008 TATTTCTGCCCTATGTTCGTATTTTTTTCTCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
* * *
47981073 AATTTTTTTTTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTT
66 AA--TTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATGTTTT
47981138 TTAAATAAA-TT-AAAAAATCAT
129 TTAAATAAATTTAAAAAAATCAT
*
47981159 TATTTCGGCCCTTTGTTCGTATTTTTTT-CCAGATTTTATTACTTTCAATAAAAATA-TA----T
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAA-AAAAATACTATTTTT
* * * *
47981218 T-ATTTTATTATTTTATATTATTTTAGTACATCATGTTTGAAATGTATTAATTTACTGTGTTTTT
65 TAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATGTTTTT
* *
47981282 TAAATAAATTTAGAAAAATCTT
130 TAAATAAATTTAAAAAAATCAT
* * *
47981304 TATTTCGGCCATTTGTTCGTATTTTTTCCCCAGAGTTTATTAC-TTTAAACAAATATACTATTTT
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAA-AAA-ATACTATTTT
* * * * *
47981368 CTAATTTTATTATTTTAAATTATTTTAGTACATTATGTTTGAAATGTATTCATTTAGTATGTTTT
64 TTAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATGTTTT
47981433 TTAAATAAATTTTAAAAAAAACTC-T
129 TTAAATAAA-TTT-AAAAAAA-TCAT
* * * * *
47981458 TATTTCGGCCTTTTGTTCATATTTTTTTCCCGGATTTTCTTACTTTCAATAAAAA
1 TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAA-AAAAA
47981513 AACACACTAA
Statistics
Matches: 443, Mismatches: 38, Indels: 44
0.84 0.07 0.08
Matches are distributed among these distances:
143 65 0.15
144 3 0.01
145 42 0.09
146 18 0.04
147 2 0.00
150 52 0.12
151 35 0.08
152 91 0.21
153 14 0.03
154 109 0.25
155 11 0.02
156 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.53
Consensus pattern (151 bp):
TATTTCGGCCCTTTGTTCGTATTTTTTTCCCAGATTTTATTACTTTTAAAAAAATACTATTTTTT
AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTACTATGTTTTTT
AAATAAATTTAAAAAAATCAT
Found at i:47981844 original size:150 final size:151
Alignment explanation
Indices: 47981509--47981927 Score: 614
Period size: 150 Copynumber: 2.8 Consensus size: 151
47981499 ACTTTCAATA
*
47981509 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA-T
1 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
* * * *
47981573 TAGAAAATAATATATTTTTTAAAAGTAATAAAATCCGAG--AAAAATACGAACAAATGGTCAAAA
66 TA-AAAATAATATATTTTTTAAAAGTAATAAAATTCGAGAAAAAAATACGAATAAAGGGCCAAAA
47981636 TAAGGATTTTTTTAATTTATTT
130 TAAGGATTTTTTTAATTTATTT
*
47981658 AAAAAACACACTAAATTAATACATTTCATACATAATGTACTAAAATAATGTAAAATAAAAAAATT
1 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
* * * *
47981723 TAAAAATAGTAT-TTTTTTAGAAGTAATAAAATTCGAGAAAAAAATACGAATATAGGGCCGAAAT
66 TAAAAATAATATATTTTTTAAAAGTAATAAAATTCGAGAAAAAAATACGAATAAAGGGCCAAAAT
47981787 AA-GAGTTTTTTTAATTTATTT
131 AAGGA-TTTTTTTAATTTATTT
* * * * **
47981808 AAAAAATACAATAAATTAATATATTTCAAATATAATGTACTAAAATAATGTAAAATTTAAAAATT
1 AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
* * *
47981873 TAAAAATAATATATTTTTTAAAAATAATAAAATTTGAGAAAAAAATACAAATAAA
66 TAAAAATAATATATTTTTTAAAAGTAATAAAATTCGAGAAAAAAATACGAATAAA
47981928 ATGTCAAAAT
Statistics
Matches: 242, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
148 23 0.10
149 72 0.30
150 110 0.45
151 37 0.15
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.32
Consensus pattern (151 bp):
AAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAATT
TAAAAATAATATATTTTTTAAAAGTAATAAAATTCGAGAAAAAAATACGAATAAAGGGCCAAAAT
AAGGATTTTTTTAATTTATTT
Found at i:47982300 original size:10 final size:10
Alignment explanation
Indices: 47982285--47982400 Score: 57
Period size: 10 Copynumber: 11.5 Consensus size: 10
47982275 TTTTTATTTT
47982285 AAAAATTTAA
1 AAAAATTTAA
*
47982295 AAAAATTAAAA
1 AAAAATT-TAA
47982306 AAAAGTATTTTAA
1 AAAA--A-TTTAA
*
47982319 AAATATTT--
1 AAAAATTTAA
*
47982327 TAAAA-TTAA
1 AAAAATTTAA
47982336 AAAAATTTAAA
1 AAAAATTT-AA
47982347 AAAAGTATTTTAA
1 AAAA--A-TTTAA
*
47982360 AAATATTT--
1 AAAAATTTAA
*
47982368 TAAAA-TTAA
1 AAAAATTTAA
*
47982377 AAAAAATTAA
1 AAAAATTTAA
47982387 AAAAA-TTAA
1 AAAAATTTAA
47982396 AAAAA
1 AAAAA
47982401 GTATGTAAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
7 4 0.05
8 6 0.07
9 17 0.21
10 24 0.29
11 14 0.17
13 12 0.15
14 5 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (10 bp):
AAAAATTTAA
Found at i:47982320 original size:12 final size:11
Alignment explanation
Indices: 47982305--47982372 Score: 56
Period size: 11 Copynumber: 6.4 Consensus size: 11
47982295 AAAAATTAAA
47982305 AAAAAGTATTTT
1 AAAAA-TATTTT
47982317 AAAAATATTTT
1 AAAAATATTTT
47982328 --AAA-A--TT
1 AAAAATATTTT
* *
47982334 AAAAAAATTTAA
1 AAAAATATTT-T
47982346 AAAAAGTATTTT
1 AAAAA-TATTTT
47982358 AAAAATATTTT
1 AAAAATATTTT
47982369 AAAA
1 AAAA
47982373 TTAAAAAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
6 2 0.04
8 4 0.09
9 4 0.09
11 17 0.37
12 15 0.33
13 4 0.09
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:47982320 original size:32 final size:32
Alignment explanation
Indices: 47982279--47982340 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
47982269 GGCCCATTTT
47982279 TATTTTAAAAAT-TTAAAAAAATTAAAAAAAAG
1 TATTTTAAAAATATT-AAAAAATTAAAAAAAAG
**
47982311 TATTTTAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTAAAAAATTAAAAAAA
47982341 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (32 bp):
TATTTTAAAAATATTAAAAAATTAAAAAAAAG
Found at i:47982348 original size:17 final size:17
Alignment explanation
Indices: 47982315--47982348 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47982305 AAAAAGTATT
* *
47982315 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTAAAAA
47982332 TTAAAAAAATTTAAAAA
1 TTAAAAAAATTTAAAAA
47982349 AAGTATTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAAAATTTAAAAA
Found at i:47982348 original size:41 final size:41
Alignment explanation
Indices: 47982279--47982391 Score: 190
Period size: 41 Copynumber: 2.7 Consensus size: 41
47982269 GGCCCATTTT
*
47982279 TATTTTAAAAATTTAAAAAAATTAAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAA-TTAAAAAAATTTAAAAAAAGTATTTTAAAAA
47982322 TATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAA
*
47982363 TATTTTAAAATTAAAAAAAATTAAAAAAA
1 TATTTTAAAATTAAAAAAATTTAAAAAAA
47982392 TTAAAAAAAG
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 58 0.85
42 4 0.06
43 6 0.09
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAA
Found at i:47982400 original size:9 final size:9
Alignment explanation
Indices: 47982369--47982400 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
47982359 AAAATATTTT
47982369 AAAATTAAAA
1 AAAATT-AAA
47982379 AAAATTAAA
1 AAAATTAAA
47982388 AAAATTAAA
1 AAAATTAAA
47982397 AAAA
1 AAAA
47982401 GTATGTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAATTAAA
Found at i:47982418 original size:49 final size:51
Alignment explanation
Indices: 47982328--47982432 Score: 187
Period size: 49 Copynumber: 2.1 Consensus size: 51
47982318 AAAATATTTT
*
47982328 AAAATTAAAAAAATTTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAATTTAAAAAAAGTATTGTAAAAATATTTTAAAATTAAAA
47982379 AAAATTAAAAAAA-TTAAAAAAAGTA-TGTAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAATTTAAAAAAAGTATTGTAAAAATATTTTAAAATTAAAA
47982428 AAAAT
1 AAAAT
47982433 AATTTATTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
49 28 0.53
50 12 0.23
51 13 0.25
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (51 bp):
AAAATTAAAAAAATTTAAAAAAAGTATTGTAAAAATATTTTAAAATTAAAA
Found at i:47988729 original size:41 final size:42
Alignment explanation
Indices: 47988650--47988738 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 42
47988640 TAATAATATG
* **
47988650 ATTTT-TATAATTTCTTTTACAATTTTTTACAATTTCTAA-T
1 ATTTTATATAATTTCTTTTACAATTTTTTAAAAACTCTAACT
*
47988690 ATTTTATATAGTTT-TTTTACAATTTTTTAAAAAACTCTAACCT
1 ATTTTATATAATTTCTTTTACAATTTTTT-AAAAACTCTAA-CT
47988733 ATTTTA
1 ATTTTA
47988739 ATTTTTTAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 19 0.46
41 15 0.37
43 7 0.17
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.56
Consensus pattern (42 bp):
ATTTTATATAATTTCTTTTACAATTTTTTAAAAACTCTAACT
Found at i:47989269 original size:6 final size:6
Alignment explanation
Indices: 47989238--47989268 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
47989228 AGATTTAAAA
47989238 TTGATT TTGATT TTGATT TTGATT TTG-TT TT
1 TTGATT TTGATT TTGATT TTGATT TTGATT TT
47989269 TATTAATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (6 bp):
TTGATT
Found at i:47990719 original size:15 final size:15
Alignment explanation
Indices: 47990683--47990721 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
47990673 GCAAATATCG
*
47990683 TGATAACAAATACAA
1 TGATAATAAATACAA
47990698 T-AGTAATAAATACAA
1 TGA-TAATAAATACAA
47990713 TGATAATAA
1 TGATAATAA
47990722 TTTTAACGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.26
Consensus pattern (15 bp):
TGATAATAAATACAA
Found at i:47992629 original size:44 final size:44
Alignment explanation
Indices: 47992581--47992802 Score: 165
Period size: 44 Copynumber: 5.0 Consensus size: 44
47992571 GAGACAGGAT
47992581 TTGTTCATTCAGTCTGC-CGCACTGCAACTTCAAGAGGATAAGAC
1 TTGTTCATTCAGTCTGCTC-CACTGCAACTTCAAGAGGATAAGAC
* * *
47992625 TTGTTTACTT-AGTCTGCTCCACTGCAACTTC-AGGGAGATAGGA-
1 TTGTTCA-TTCAGTCTGCTCCACTGCAACTTCAAGAG-GATAAGAC
* * * * * *
47992668 TT-ATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAAGATAAGAT
1 TTGTTC--ATTCAGTCTGCTCCACTGCAACTTCAAGAGGATAAGAC
* * *
47992713 TTG-CCATCTTCAGTCTGC-CTCACTGCAACTTCAGGAGAATAAGAC
1 TTGTTCA--TTCAGTCTGCTC-CACTGCAACTTCAAGAGGATAAGAC
* *
47992758 TTGCTT-ATTTAGTCTTCTCCACTGCAACTTCAAG-GAGATAAGAC
1 TTG-TTCATTCAGTCTGCTCCACTGCAACTTCAAGAG-GATAAGAC
47992802 T
1 T
47992803 AAATGCAATC
Statistics
Matches: 139, Mismatches: 23, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 8 0.06
44 88 0.63
45 41 0.29
46 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (44 bp):
TTGTTCATTCAGTCTGCTCCACTGCAACTTCAAGAGGATAAGAC
Found at i:47992779 original size:89 final size:88
Alignment explanation
Indices: 47992600--47993451 Score: 351
Period size: 89 Copynumber: 9.8 Consensus size: 88
47992590 CAGTCTGCCG
* **
47992600 CACTGCAACTTCAAGAGGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * *
47992665 GGATTATCGGCTTTAATCTGCTC
66 AGATTAGCGGATTTAATCTGCTC
*
47992688 CACTGCAACTTCAAGAAGATAAGATTTGCCAT-CTTCAGTCTGC-CTCACTGCAACTTCA-GGAG
1 CACTGCAACTTCAAGAAGATAAGACTTG-CATACTT-AGTCTGCTC-CACTGCAACTTCAGGGAG
** * *
47992750 AATAAGACTT-GCTTATTTAGTCTTCTC
63 -ATAAGA-TTAGCGGATTTAATCTGCTC
* ** * * * * *
47992777 CACTGCAACTTCAAGGAGATAAGAC-TAAATGC--AATCTACT-CTCTGCAACTTCAGAGAGATA
1 CACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
47992838 AGATCCA-AGGTTTTAATCCGCTC
66 AGAT-TAGCGGATTTAATCTGCTC
* * * * * * * *
47992861 CACTGCAACTTCAGGGAGATAGGA-TT--ATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAG
1 CACTGCAACTTCAAGAAGATAAGACTTGCAT--AC-TTAGTCTGCTCCACTGCAACTTCAGGGAG
* * **
47992923 ATAAGATTTGC-CATCTTTAGCCTGC-C
63 ATAAGATTAGCGGA--TTTAATCTGCTC
* * * *
47992949 TCACTGCAACTTC-AGGAGAATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTTAGAGAGA
1 -CACTGCAACTTCAAGAAG-ATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGA
* * ***
47993013 TAAGACTA---AATGCGATCTGCT-
64 TAAGATTAGCGGATTTAATCTGCTC
* * * * * *
47993034 CTCTGCAACTTC-AGAGAGATAAGA--TCCA-AGGTTTTAATCCGCTCCACTGTAACTTCAGGGA
1 CACTGCAACTTCAAGA-AGATAAGACTTGCATA---CTTAGTCTGCTCCACTGCAACTTCAGGGA
* * * *
47993095 GATAGGATTATCAGCTTTAATCTGCTC
62 GATAAGATTAGCGGATTTAATCTGCTC
* * *
47993122 CACTGCAACTTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGC-CTCACTGCAACTTCA-GGAG
1 CACTGCAACTTCAAGAAGATAAGACTTG-CATACTT-AGTCTGCTC-CACTGCAACTTCAGGGAG
** * *
47993184 AATAAGACTT-GCTTACTTAGTCTGCTC
63 -ATAAGA-TTAGCGGATTTAATCTGCTC
* ** * * * *
47993211 CACTGCAACTT-TAGAGAGATAAGAC-TAAATGC-GA-TCTGCT-CTCTGCAACTTCAGAGAGAT
1 CACTGCAACTTCAAGA-AGATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
* * *
47993271 AAGATTCA-AGGTTTTAATCCGCTC
65 AAGATT-AGCGGATTTAATCTGCTC
* * * * * * * * * *
47993295 TACTGCAACTTCAGGGAGATAGGA-TT--ATCGGCTTTAATATTCTCTACTGCAACTTCAGGGAA
1 CACTGCAACTTCAAGAAGATAAGACTTGCAT--AC-TTAGTCTGCTCCACTGCAACTTCAGGGAG
* *
47993357 ATAAGATTTGAC--ATCTCCAATCTGC-C
63 ATAAGATTAG-CGGAT-T-TAATCTGCTC
* * * * * *
47993383 TCACTGCAACTTTAGGAGGATAAGACTTGCTTGCTTAGTTTGCTCCACTGCAACTTCAGGGAGAT
1 -CACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGAT
47993448 AAGA
65 AAGA
47993452 CTAAATGCAA
Statistics
Matches: 562, Mismatches: 137, Indels: 129
0.68 0.17 0.16
Matches are distributed among these distances:
81 1 0.00
82 6 0.01
83 3 0.01
84 149 0.27
85 24 0.04
86 2 0.00
87 25 0.04
88 114 0.20
89 222 0.40
90 12 0.02
91 2 0.00
92 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (88 bp):
CACTGCAACTTCAAGAAGATAAGACTTGCATACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
AGATTAGCGGATTTAATCTGCTC
Found at i:47992893 original size:217 final size:217
Alignment explanation
Indices: 47992640--47993538 Score: 1428
Period size: 217 Copynumber: 4.1 Consensus size: 217
47992630 TACTTAGTCT
47992640 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAA
*
47992705 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTATTTAG
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
* *
47992770 TCTTCTCCACTGCAACTTCAAG-GAGATAAGACTAAATGCAATCTACTCTCTGCAACTTCAGAGA
131 TCTGCTCCACTGCAACTT-AAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGA
47992834 GATAAGATCCAAGGTTTTAATCC
195 GATAAGATCCAAGGTTTTAATCC
*
47992857 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAA
* *
47992922 GATAAGATTTGCCATCTTTAGCCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
* *
47992987 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAG
131 TCTGCTCCACTGCAACTTAAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAG
47993052 ATAAGATCCAAGGTTTTAATCC
196 ATAAGATCCAAGGTTTTAATCC
* * * *
47993074 GCTCCACTGTAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAA
47993139 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
66 GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
* *
47993204 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAG
131 TCTGCTCCACTGCAACTTAAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAG
*
47993269 ATAAGATTCAAGGTTTTAATCC
196 ATAAGATCCAAGGTTTTAATCC
* * * * *
47993291 GCTCTACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATATTCTCTACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCA-AGA
* * * * * *
47993356 A-ATAAGATTTGACATCTCCAATCTGCCTCACTGCAACTTTAGGAGGATAAGACTTGCTTGCTTA
65 AGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTA
* * *
47993420 GTTTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGA
130 GTCTGCTCCACTGCAACTTAAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGA
* * *
47993485 GATAATATCTGTAA--TTTTAACCC
195 GATAAGATC--CAAGGTTTTAATCC
* *
47993508 ACTCCACTGCAACTTCAGGGAGATAAGATTA
1 GCTCCACTGCAACTTCAGGGAGATAGGATTA
47993539 CTGGCTACCG
Statistics
Matches: 638, Mismatches: 40, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
216 2 0.00
217 631 0.99
218 3 0.00
219 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (217 bp):
GCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAAGAA
GATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGAATAAGACTTGCTTACTTAG
TCTGCTCCACTGCAACTTAAGAGAGATAAGACTAAATGCAATCTGCTCTCTGCAACTTCAGAGAG
ATAAGATCCAAGGTTTTAATCC
Found at i:47993042 original size:173 final size:173
Alignment explanation
Indices: 47992863--47993192 Score: 379
Period size: 173 Copynumber: 1.9 Consensus size: 173
47992853 ATCCGCTCCA
* * * * * *
47992863 CTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTCCACTGCAATTTCAAGAAGATAA
1 CTGCAACTTCAGAGAGATAAGATCCA-AGGCTTTAATCCGCTCCACTGCAACTTCAAGAAGATAA
* * *
47992927 GATT-TGCCATCTTTAGCCTGC-CTCACTGCAACTTCA-GGAGAATAAGACTTG-CTTACTT-AG
65 GATTAT--CAGCTTTAACCTGCTC-CACTGCAACTTCAGGGAG-ATAAGACTTGCCAT-CTTCAG
*
47992987 TCTG-CTCCACTGCAACTTTA-GAGAGATAAGACTAAATGCGATCTGCTCT
125 TCTGCCT-CACTGCAACTTCAGGAGA-ATAAGACTAAATGCGATCTGCTCT
* * * * *
47993036 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGG
1 CTGCAACTTCAGAGAGATAAGATCCAAGGCTTTAATCCGCTCCACTGCAACTTCAAGAAGATAAG
* *
47993101 ATTATCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCC
66 ATTATCAGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCC
47993166 TCACTGCAACTTCAGGAGAATAAGACT
131 TCACTGCAACTTCAGGAGAATAAGACT
47993193 TGCTTACTTA
Statistics
Matches: 132, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
172 36 0.27
173 88 0.67
174 8 0.06
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (173 bp):
CTGCAACTTCAGAGAGATAAGATCCAAGGCTTTAATCCGCTCCACTGCAACTTCAAGAAGATAAG
ATTATCAGCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCC
TCACTGCAACTTCAGGAGAATAAGACTAAATGCGATCTGCTCT
Found at i:47993331 original size:44 final size:44
Alignment explanation
Indices: 47992637--47993538 Score: 406
Period size: 44 Copynumber: 20.8 Consensus size: 44
47992627 GTTTACTTAG
* *
47992637 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * *
47992681 TCTGCTCCACTGCAACTTCAAGAAGATAAGATT-T-GCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGC-T-TT-AA
* *
47992726 TCTGC-CTCACTGCAACTTCA-GGAGAATAAGACT-T--GCTTATTTAG
1 TCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTATAGGC---TTTAA
* * * * *
47992770 TCTTCTCCACTGCAACTTCAAGGAGATAAGACTAAATGC---AA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * * *
47992811 TCTACT-CTCTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATAGGCTTTAA
* * *
47992854 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * * *
47992898 TCTGCTCCACTGCAATTTCAAGAAGATAAGATT-T-GCCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAG---GCTTTAA
* * *
47992943 CCTGC-CTCACTGCAACTTCA-GGAGAATAAGACT-T--GCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTATAGGC-T--TTAA
* * * * * *
47992987 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGC---GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * *
47993028 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCA-AGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATAGGCTTTAA
* * *
47993071 TCCGCTCCACTGTAACTTCAGGGAGATAGGATTATCA-GCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-AGGCTTTAA
* *
47993115 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT-T-GCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGC-T-TT-AA
* *
47993160 TCTGC-CTCACTGCAACTTCA-GGAGAATAAGACT-T--GCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTATAGGC-T--TTAA
* * * * * *
47993204 TCTGCTCCACTGCAACTTTAGAGAGATAAGACTAAATGC---GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * *
47993245 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATTCA-AGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ATAGGCTTTAA
* * * *
47993288 TCCGCTCTACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * * * *
47993332 TATTCTCTACTGCAACTTCAGGGAAATAAGATT-T-GACATCTCCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGC-T-T-TAA
* * * *
47993377 TCTGC-CTCACTGCAACTTTA-GGAGGATAAGACTTGCT-TGC-TTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TT-ATAGGCTTTAA
* * * *
47993421 TTTGCTCCACTGCAACTTCAGGGAGATAAGACTAAATGC---AA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
* * * * **
47993462 TCTGCT-CTCTGCAACTTCAGAGAGATAATATCTGTA-ATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATAGGCTTTAA
* **
47993505 CCCACTCCACTGCAACTTCAGGGAGATAAGATTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTA
47993539 CTGGCTACCG
Statistics
Matches: 663, Mismatches: 123, Indels: 145
0.71 0.13 0.16
Matches are distributed among these distances:
40 93 0.14
41 30 0.05
42 7 0.01
43 38 0.06
44 354 0.53
45 129 0.19
46 4 0.01
47 6 0.01
48 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTATAGGCTTTAA
Found at i:48005445 original size:15 final size:15
Alignment explanation
Indices: 48005409--48005447 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
48005399 GCAAATATTG
*
48005409 TGATAACAAATACAA
1 TGATAATAAATACAA
48005424 T-AGTAATAAATACAA
1 TGA-TAATAAATACAA
48005439 TGATAATAA
1 TGATAATAA
48005448 TTTTAACGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.59, C:0.08, G:0.08, T:0.26
Consensus pattern (15 bp):
TGATAATAAATACAA
Found at i:48011385 original size:16 final size:16
Alignment explanation
Indices: 48011364--48011409 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
48011354 AAATGGGTTG
48011364 AGAAAATTATTTAATT
1 AGAAAATTATTTAATT
*
48011380 AGAAAATTAATTAATT
1 AGAAAATTATTTAATT
48011396 --AAAATTAATTTAAT
1 AGAAAATT-ATTTAAT
48011410 AACTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 6 0.22
15 6 0.22
16 15 0.56
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (16 bp):
AGAAAATTATTTAATT
Found at i:48013107 original size:24 final size:24
Alignment explanation
Indices: 48013078--48013139 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
48013068 TCGAAGAAGT
** **
48013078 TGATAGTAATAGTGGGAGTTATGA
1 TGATAGTAATAGTGCAAACTATGA
48013102 TGATAGTAATAGTGCAAACTATGA
1 TGATAGTAATAGTGCAAACTATGA
*
48013126 TGATAGTGATAGTG
1 TGATAGTAATAGTG
48013140 AACTTTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.32
Consensus pattern (24 bp):
TGATAGTAATAGTGCAAACTATGA
Found at i:48014067 original size:42 final size:42
Alignment explanation
Indices: 48014008--48014098 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
48013998 GTTTGCAGCG
*
48014008 TTTTTCTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCA
1 TTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCA
* *
48014050 TTTTTTTCTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCG
1 TTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCA
48014092 TTTTTTT
1 TTTTTTT
48014099 ACAAAAACGT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (42 bp):
TTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCA
Found at i:48014451 original size:21 final size:21
Alignment explanation
Indices: 48014417--48014478 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
48014407 GCTCTGCTCT
*
48014417 GCTTCTCTCGCTGCAGCCTCC
1 GCTTCCCTCGCTGCAGCCTCC
* * *
48014438 GCTTCCCTCACTGCAGCCGCT
1 GCTTCCCTCGCTGCAGCCTCC
*
48014459 GCTTCCCTCGCTGCCGCCTC
1 GCTTCCCTCGCTGCAGCCTC
48014479 TTCTTTAAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.05, C:0.50, G:0.19, T:0.26
Consensus pattern (21 bp):
GCTTCCCTCGCTGCAGCCTCC
Found at i:48020014 original size:9 final size:9
Alignment explanation
Indices: 48020000--48020205 Score: 109
Period size: 9 Copynumber: 24.2 Consensus size: 9
48019990 TTTTTATGTA
48020000 TTATGTAAG
1 TTATGTAAG
48020009 TTATGTAAG
1 TTATGTAAG
*
48020018 TTATGT--C
1 TTATGTAAG
48020025 TTATGT-A-
1 TTATGTAAG
48020032 TTATGTAAG
1 TTATGTAAG
48020041 -TACTGTAAG
1 TTA-TGTAAG
*
48020050 TAATGTAAG
1 TTATGTAAG
48020059 TTATGTAAG
1 TTATGTAAG
* * *
48020068 -AAAGTTA-
1 TTATGTAAG
48020075 TTATGTAAG
1 TTATGTAAG
*
48020084 TTGTGTATA-
1 TTATGTA-AG
*
48020093 ATAT-TAA-
1 TTATGTAAG
*
48020100 TTATGTGAG
1 TTATGTAAG
**
48020109 TCGTGT-A-
1 TTATGTAAG
*
48020116 TAATGTAAG
1 TTATGTAAG
*
48020125 TTAAG-AAGG
1 TTATGTAA-G
48020134 TTATGT-A-
1 TTATGTAAG
*
48020141 TAATGTAAG
1 TTATGTAAG
48020150 TTATGTAAG
1 TTATGTAAG
* * *
48020159 TAATTTAAT
1 TTATGTAAG
48020168 TTATGTAAG
1 TTATGTAAG
48020177 TTATGTAAG
1 TTATGTAAG
* *
48020186 TTATTTAAT
1 TTATGTAAG
*
48020195 TTATGTCAG
1 TTATGTAAG
48020204 TT
1 TT
48020206 TCTATATATG
Statistics
Matches: 147, Mismatches: 34, Indels: 32
0.69 0.16 0.15
Matches are distributed among these distances:
7 25 0.17
8 20 0.14
9 100 0.68
10 2 0.01
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:48020029 original size:32 final size:32
Alignment explanation
Indices: 48019993--48020055 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
48019983 TGATATATTT
*
48019993 TTATGTATTATGTAAGTTA-TGTAAGTTATGTC
1 TTATGTATTATGTAAG-TACTGTAAGTAATGTC
48020025 TTATGTATTATGTAAGTACTGTAAGTAATGT
1 TTATGTATTATGTAAGTACTGTAAGTAATGT
48020056 AAGTTATGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 2 0.07
32 27 0.93
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.48
Consensus pattern (32 bp):
TTATGTATTATGTAAGTACTGTAAGTAATGTC
Found at i:48020322 original size:22 final size:21
Alignment explanation
Indices: 48020276--48020327 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
48020266 AGTGGTGTAT
* * *
48020276 TAAGTTATGGAAGTTATTATG
1 TAAGTTATGCAAGTTATAATA
48020297 TAAGTTATGCAAGATTATAATA
1 TAAGTTATGCAAG-TTATAATA
48020319 TAAGTTATG
1 TAAGTTATG
48020328 TATTATGTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.38, C:0.02, G:0.19, T:0.40
Consensus pattern (21 bp):
TAAGTTATGCAAGTTATAATA
Found at i:48020341 original size:8 final size:7
Alignment explanation
Indices: 48020323--48020360 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
48020313 ATAATATAAG
48020323 TTATGTA
1 TTATGTA
48020330 TTATGTTA
1 TTATG-TA
48020338 TTATGTA
1 TTATGTA
48020345 TTATGTA
1 TTATGTA
48020352 --ATGTA
1 TTATGTA
48020357 TTAT
1 TTAT
48020361 CAGATTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (7 bp):
TTATGTA
Found at i:48020341 original size:27 final size:26
Alignment explanation
Indices: 48020308--48020380 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
48020298 AAGTTATGCA
*
48020308 AGATTATAATATAAGTTATGTATTATG
1 AGATTAT-ATATAAGTTATGTATTATC
** * * *
48020335 TTATTATGTATTATGTAATGTATTATC
1 AGATTATATA-TAAGTTATGTATTATC
48020362 AGATTATATATAAGTTATG
1 AGATTATATATAAGTTATG
48020381 AAAGTTATTA
Statistics
Matches: 34, Mismatches: 11, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (26 bp):
AGATTATATATAAGTTATGTATTATC
Found at i:48020397 original size:21 final size:22
Alignment explanation
Indices: 48020372--48020457 Score: 67
Period size: 21 Copynumber: 4.0 Consensus size: 22
48020362 AGATTATATA
48020372 TAAGTTATGA-AAGTTATTATG
1 TAAGTTATGATAAGTTATTATG
* *
48020393 TAAGTTAT-ACAAGCTTA-TATA
1 TAAGTTATGATAAG-TTATTATG
*
48020414 TAAGTTATGTATTATGTTATTATG
1 TAAGTTATG-A-TAAGTTATTATG
*
48020438 T-A-TTATG-TAATTTATTATG
1 TAAGTTATGATAAGTTATTATG
48020457 T
1 T
48020458 TATTATATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
19 11 0.21
20 1 0.02
21 22 0.42
22 8 0.15
23 5 0.09
24 6 0.11
ACGTcount: A:0.35, C:0.02, G:0.14, T:0.49
Consensus pattern (22 bp):
TAAGTTATGATAAGTTATTATG
Found at i:48020416 original size:42 final size:42
Alignment explanation
Indices: 48020365--48020508 Score: 119
Period size: 50 Copynumber: 3.2 Consensus size: 42
48020355 TATTATCAGA
48020365 TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
1 TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
* * * *
48020407 TTATATATAAGTTATGTATTATGTTATTATGTATTATGTAATTTATTATG-
1 TTATATATAAGTTATG-A--AAGTTATTATGTA--A-GT--TATA-CAAGC
* *
48020457 TTATTATATATACGTTATGGAAGTTATTATGTAAGTTATGCAAGC
1 TTA-TATATA-A-GTTATGAAAGTTATTATGTAAGTTATACAAGC
48020502 TTATATA
1 TTATATA
48020509 CCAATTATGC
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
42 16 0.20
43 1 0.01
44 6 0.08
45 17 0.22
47 3 0.04
48 3 0.04
50 18 0.23
51 8 0.10
52 1 0.01
53 6 0.08
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.47
Consensus pattern (42 bp):
TTATATATAAGTTATGAAAGTTATTATGTAAGTTATACAAGC
Found at i:48020436 original size:8 final size:7
Alignment explanation
Indices: 48020418--48020463 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
48020408 TATATATAAG
48020418 TTATGTA
1 TTATGTA
48020425 TTATGTTA
1 TTATG-TA
48020433 TTATGTA
1 TTATGTA
48020440 TTATGTA
1 TTATGTA
*
48020447 --ATTTA
1 TTATGTA
48020452 TTATGTTA
1 TTATG-TA
48020460 TTAT
1 TTAT
48020464 ATATACGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:48020437 original size:95 final size:95
Alignment explanation
Indices: 48020276--48020542 Score: 401
Period size: 95 Copynumber: 2.8 Consensus size: 95
48020266 AGTGGTGTAT
*
48020276 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGATTATAATATAAGTTATGTATTATGTTATTA
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTAT-ATATAAGTTATGTATTATGTTATTA
48020341 TGTATTATGTAATGTATTATCAGATTATATA
65 TGTATTATGTAATGTATTATCAGATTATATA
* *
48020372 TAAGTTATGAAAGTTATTATGTAAGTTATACAAGCTTATATATAAGTTATGTATTATGTTATTAT
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATATAAGTTATGTATTATGTTATTAT
* ***
48020437 GTATTATGTAATTTATTATGTTATTATATA
66 GTATTATGTAATGTATTATCAGATTATATA
* * * *
48020467 TACGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATACCAA-TTATGCATTGTGTTATTA
1 TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATA-TAAGTTATGTATTATGTTATTA
*
48020531 TGTATTAAGTAA
65 TGTATTATGTAA
48020543 GCAAATGATT
Statistics
Matches: 156, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
95 118 0.76
96 38 0.24
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (95 bp):
TAAGTTATGGAAGTTATTATGTAAGTTATGCAAGCTTATATATAAGTTATGTATTATGTTATTAT
GTATTATGTAATGTATTATCAGATTATATA
Found at i:48020438 original size:15 final size:15
Alignment explanation
Indices: 48020418--48020463 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
48020408 TATATATAAG
48020418 TTATGTATTATGTTA
1 TTATGTATTATGTTA
48020433 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
48020447 --ATTTATTATGTTA
1 TTATGTATTATGTTA
48020460 TTAT
1 TTAT
48020464 ATATACGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:48020825 original size:60 final size:61
Alignment explanation
Indices: 48020684--48020832 Score: 178
Period size: 61 Copynumber: 2.5 Consensus size: 61
48020674 TTAAAAATAT
* * * *
48020684 ATAATTATTTACAAAACGTGTAAAATTGATACTTATAAATTTTATTAATAATAAATCTAGA
1 ATAATTATTTACAAAACTTATAAATTTAATACTTATAAATTTTATTAATAATAAATCTAGA
* * * * *
48020745 ACACTTTTTTAGAAAACTTATAAATTTAATAC-TACTAAATTTT-TATACTAATAAAT-TAGA
1 ATAATTATTTACAAAACTTATAAATTTAATACTTA-TAAATTTTAT-TAATAATAAATCTAGA
48020805 ATAATTATTTACAAAACTTATAAATTTA
1 ATAATTATTTACAAAACTTATAAATTTA
48020833 GAAAACTTAT
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
60 31 0.42
61 42 0.58
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.41
Consensus pattern (61 bp):
ATAATTATTTACAAAACTTATAAATTTAATACTTATAAATTTTATTAATAATAAATCTAGA
Found at i:48020837 original size:17 final size:17
Alignment explanation
Indices: 48020811--48020843 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
48020801 TAGAATAATT
48020811 ATTTACAAAACTTATAA
1 ATTTACAAAACTTATAA
*
48020828 ATTTAGAAAACTTATA
1 ATTTACAAAACTTATA
48020844 TAGAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (17 bp):
ATTTACAAAACTTATAA
Found at i:48022540 original size:22 final size:20
Alignment explanation
Indices: 48022486--48022525 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
48022476 AAGAGATGAA
48022486 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
48022506 GAAAGGATGAGGGGAAATCG
1 GAAAGGATGAGGGGAAATCG
48022526 TAGAAAGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.45, T:0.10
Consensus pattern (20 bp):
GAAAGGATGAGGGGAAATCG
Found at i:48025730 original size:114 final size:112
Alignment explanation
Indices: 48025474--48025731 Score: 306
Period size: 113 Copynumber: 2.3 Consensus size: 112
48025464 TATCCCAATA
* * * * * *
48025474 TTTTGCGGCGTTTTTTAATAAGCGCCACTAACTCTAATCTACCTCAAGACCAAACGGTGCGTTTT
1 TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCATTTT
** * *
48025539 GGTTAAGATATTTGCGGCGCTTTTTGTAATACGCCGCTAATACTGTT
66 GGTTAAGATATTTGCGGCGCTTCATATAATACGCCACTAATACTGTT
* **
48025586 TTTTAGCGGCGTTTTCTCGTAAACGCCACTAA-TACTAATATACCTCAAAACCAAACGCTGCATT
1 TTTTA-CGGCGTTTTTTAATAAACGCCACTAACT-CTAATATACCTCAAAACCAAACGCTGCATT
*
48025650 TTGGTTAAGGTATTTTGCGGCGCTTACATATAA-ACGCCACTAATGA-TGTT
64 TTGGTTAAGATA-TTTGCGGCGCTT-CATATAATACGCCACTAAT-ACTGTT
*
48025700 CTTTTACGGCGTTTTTTAAAAAACGCCACTAA
1 -TTTTACGGCGTTTTTTAATAAACGCCACTAA
48025732 ATGTTTAGGT
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
112 5 0.04
113 59 0.48
114 48 0.39
115 10 0.08
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (112 bp):
TTTTACGGCGTTTTTTAATAAACGCCACTAACTCTAATATACCTCAAAACCAAACGCTGCATTTT
GGTTAAGATATTTGCGGCGCTTCATATAATACGCCACTAATACTGTT
Found at i:48027397 original size:7 final size:7
Alignment explanation
Indices: 48027357--48027382 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
48027347 ATAACTCCAA
48027357 AAAATTT
1 AAAATTT
48027364 AAAATTT
1 AAAATTT
48027371 AAAATTT
1 AAAATTT
48027378 AAAAT
1 AAAAT
48027383 AATAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:48038584 original size:16 final size:17
Alignment explanation
Indices: 48038563--48038601 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
48038553 ATATATGAAG
48038563 ATTATTATTTA-AAATT
1 ATTATTATTTATAAATT
*
48038579 ATTATT-TTTATAATTT
1 ATTATTATTTATAAATT
48038595 ATTATTA
1 ATTATTA
48038602 AAATAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTATTATTTATAAATT
Found at i:48046565 original size:28 final size:28
Alignment explanation
Indices: 48046517--48046570 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
48046507 TGGCCATGCC
48046517 ATGGTCTTACACTCATAATGCCATAGTT
1 ATGGTCTTACACTCATAATGCCATAGTT
48046545 ATGGTCTTATCA-TCA-AGATGCCATAG
1 ATGGTCTTA-CACTCATA-ATGCCATAG
48046571 CCCAACTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 1 0.04
28 21 0.88
29 2 0.08
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (28 bp):
ATGGTCTTACACTCATAATGCCATAGTT
Found at i:48046704 original size:106 final size:101
Alignment explanation
Indices: 48046541--48046727 Score: 250
Period size: 106 Copynumber: 1.8 Consensus size: 101
48046531 ATAATGCCAT
* * * * *
48046541 AGTTATGGTCTTATCATCAAGATGCCATAGCCCAACTATGGTCTTACACGTATACATTTACTGCC
1 AGTTATGGTCTTATCATAAAAATACCATAGCCCAAATATGGTCTTACACGTAAACA-TT--T-CC
48046606 ATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
62 ATGGTCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
* *
48046646 AGTTATGGTCTTTTCATTAAAAATACCATAGCCCAAATATGGTCTTACA-TTCAAACATTTCCAT
1 AGTTATGGTCTTATCA-TAAAAATACCATAGCCCAAATATGGTCTTACACGT-AAACATTTCCAT
48046710 GGTCCAACCATGGTCTTA
64 GGTCCAACCATGGTCTTA
48046728 TCTATCAATT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
102 22 0.30
103 1 0.01
105 18 0.25
106 32 0.44
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (101 bp):
AGTTATGGTCTTATCATAAAAATACCATAGCCCAAATATGGTCTTACACGTAAACATTTCCATGG
TCCAACCATGGTCTTACGTTCAAGGTGCCATAACCC
Found at i:48047842 original size:53 final size:53
Alignment explanation
Indices: 48047781--48047882 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
48047771 TTTCTAACAA
* *
48047781 AATTTTAATATTAACTCCATGACACTCCGTATTCATATACTAAGTTGGTCTAG
1 AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGTCTAG
**
48047834 AATTTTAATACTAACTCAATGACACTTTGTATTCATATACTAAGTTGGT
1 AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGT
48047883 TTTAAATTTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (53 bp):
AATTTTAATACTAACTCAATGACACTCCGTATTCATATACTAAGTTGGTCTAG
Found at i:48054863 original size:20 final size:20
Alignment explanation
Indices: 48054838--48054882 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
48054828 AATATATAAA
*
48054838 TTTGAAATTTCTATAAA-TAT
1 TTTGAAATTT-TAAAAATTAT
48054858 TTTG-AATTTTAAAAATTAT
1 TTTGAAATTTTAAAAATTAT
48054877 TTTGAA
1 TTTGAA
48054883 TTATTTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.23
19 12 0.55
20 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
TTTGAAATTTTAAAAATTAT
Found at i:48055875 original size:12 final size:12
Alignment explanation
Indices: 48055858--48055882 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48055848 GCCGCTACTG
48055858 ACAACGCCGCTA
1 ACAACGCCGCTA
48055870 ACAACGCCGCTA
1 ACAACGCCGCTA
48055882 A
1 A
48055883 AGGTCATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.16, T:0.08
Consensus pattern (12 bp):
ACAACGCCGCTA
Found at i:48055933 original size:43 final size:43
Alignment explanation
Indices: 48055872--48056032 Score: 225
Period size: 43 Copynumber: 3.7 Consensus size: 43
48055862 CGCCGCTAAC
* * *
48055872 AACGCCGCTAAAGGTCATGTTCTTTAGCGACGCTTTTTCAACA
1 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
48055915 AACGCCGCTAAAGATCATGTT-TCTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTAAAGATCATGTTCT-TTAGCGGCGCTTTTTCCACA
* *
48055958 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTCTTCCGCA
1 AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
* * *
48056001 AATGCCACTAAAGGTCATGTTCTTTTAGCGGC
1 AACGCCGCTAAAGATCATGTTC-TTTAGCGGC
48056033 ATTTGTGTTG
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
42 1 0.01
43 96 0.90
44 10 0.09
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (43 bp):
AACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCACA
Found at i:48063271 original size:114 final size:112
Alignment explanation
Indices: 48062967--48063347 Score: 503
Period size: 114 Copynumber: 3.3 Consensus size: 112
48062957 AGAAAAATAA
* * * *
48062967 TTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAATCCTAAAGCATTAGCGGCGCTGTATTAAAA
1 TTTTTTT-CGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCT-TCTTAAAA
* *
48063032 ACGCCACTAAATCCCCCGAAAGGTCAGAAAACGGCGTCGTTGGGCTTATG
64 ACGCCACTAAAT-CCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* * * *
48063082 TCTTTTTGCGGCGCTTTAC-CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
1 T-TTTTTTCGGCGCTTT-CTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGC-TTCTTAAA
*
48063146 AACGCCACTAAATCCCTGAAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
63 AACGCCACTAAATCCCCG-AAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
* *
48063197 TTTTTTTCGGTGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCCTAAAAAA
1 TTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTT-CTTAAAAA
* * * * *
48063262 CACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGGTTAGG
65 CGCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
*
48063310 TTTTTTTGCGGCGCTTTCTCAAAATCGCCGCTAAATCC
1 TTTTTTT-CGGCGCTTTCTCAAAAACGCCGCTAAATCC
48063348 CCGAATGCTC
Statistics
Matches: 235, Mismatches: 24, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
113 39 0.17
114 98 0.42
115 91 0.39
116 7 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (112 bp):
TTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCTTAAAAAC
GCCACTAAATCCCCGAAAGATCAGAAAACGGCGTCGTTGGGCTTAGG
Found at i:48063346 original size:73 final size:72
Alignment explanation
Indices: 48063244--48063416 Score: 265
Period size: 73 Copynumber: 2.4 Consensus size: 72
48063234 TTAAGCATTA
* * * * * *
48063244 GCGGCGCTTCCTAAAAAACACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGGTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
48063309 GTTTTTTT
66 G-TTTTTT
*
48063317 GCGGCGCTTTCTCAAAATCGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
48063382 GTTTTTT
66 GTTTTTT
*
48063389 GCGGCGCTTTCTCAAAAACGTCGCTAAA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAA
48063417 ACCCTGAGCA
Statistics
Matches: 91, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 32 0.35
73 59 0.65
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (72 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
GTTTTTT
Found at i:48063383 original size:186 final size:186
Alignment explanation
Indices: 48063130--48063576 Score: 660
Period size: 186 Copynumber: 2.4 Consensus size: 186
48063120 CTGAGCATTA
* * * * *
48063130 GCGGCGCTTTCTTAAAAACGCCACTAAATCCCTGAAAAGATCAGAAAACGGCGTCGTTGGGCTTA
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCG-AATGCTCAGAAAACGGCGTCGTTGGGCTTA
* * * **
48063195 GGTTTTTTTCGGTGCTTTCTCAAAAACGCCGCTAAATCCTTAAGCATTAGCGGCGCTTCCTAAAA
65 GGTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAA
* * *
48063260 AACACCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGGTTAGGTTTTTTT
130 AACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
* * *
48063317 GCGGCGCTTTCTCAAAATCGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTAG
* * * *
48063382 GTTTTTTGCGGCGCTTTCTCAAAAACGTCGCTAAAACCCTGAGCATTAGCAACGCTTCCTCAAAA
66 GTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAAA
* *
48063447 ACGCCGCTAAATCCCCGAATGCTCAGAAAACAGTGTCATTGGGCTTAGGTTTTTTT
131 ACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
* *
48063503 GCGACGCTTTCTCAATAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGAGCTTA
1 GCGGCGCTTTCTCAA-AAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTA
48063568 GGTTTTTTT
65 GGTTTTTTT
48063577 GTGGCGTTTT
Statistics
Matches: 231, Mismatches: 28, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
186 148 0.64
187 83 0.36
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (186 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGGGCTTAG
GTTTTTTTCGGCGCTTTCTCAAAAACGCCGCTAAAACCCTAAGCATTAGCAACGCTTCCTAAAAA
ACACCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTTTTTT
Found at i:48063411 original size:113 final size:115
Alignment explanation
Indices: 48063321--48063531 Score: 345
Period size: 113 Copynumber: 1.9 Consensus size: 115
48063311 TTTTTTGCGG
* *
48063321 CGCTTTCTCAAAATCGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGG-TT
1 CGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTT
* **
48063385 TTTTGCGGCGCTTTCTCAA-AAACGTCGCTAAAACCCTGAGCATTAGCAA
66 TTTTGCGACGCTTTCTCAATAAACGTCGCTAAAACCAGGAGCATTAGCAA
*
48063434 CGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGTGTCATTGGGCTTAGGTTT
1 CGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTT
*
48063499 TTTTGCGACGCTTTCTCAATAAACGCCGCTAAA
66 TTTTGCGACGCTTTCTCAATAAACGTCGCTAAA
48063532 TCCCCGAATG
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 59 0.65
114 20 0.22
115 12 0.13
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (115 bp):
CGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCATTGGGCTTAGGTTT
TTTTGCGACGCTTTCTCAATAAACGTCGCTAAAACCAGGAGCATTAGCAA
Found at i:48063529 original size:74 final size:73
Alignment explanation
Indices: 48063433--48063688 Score: 307
Period size: 85 Copynumber: 3.3 Consensus size: 73
48063423 AGCATTAGCA
* *
48063433 ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGTGTCATTGGGCTTAGGTT
1 ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
48063498 TTTTTGCG
66 TTTTTGCG
* * *
48063506 ACGCTTTCTCAATAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCGTCGTTGAGCTTAGGT
1 ACGCTTCCTCAA-AAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGG-
48063571 TTTTTTGTGGCGTTTTTGGCG
64 -----T-T----TTTTT-GCG
* *
48063592 GCGCTTCCTCAAAAATGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGG-T
1 ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
48063656 TTTTTGCG
66 TTTTTGCG
* *
48063664 GCGCTTTCTCAAAAACGCCGCTAAA
1 ACGCTTCCTCAAAAACGCCGCTAAA
48063689 GCCCTGAACA
Statistics
Matches: 158, Mismatches: 12, Indels: 27
0.80 0.06 0.14
Matches are distributed among these distances:
72 26 0.16
73 16 0.10
74 47 0.30
77 1 0.01
80 1 0.01
81 1 0.01
85 53 0.34
86 13 0.08
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (73 bp):
ACGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAGGTT
TTTTTGCG
Found at i:48063792 original size:113 final size:113
Alignment explanation
Indices: 48063589--48063800 Score: 370
Period size: 113 Copynumber: 1.9 Consensus size: 113
48063579 GGCGTTTTTG
* *
48063589 GCGGCGCTTCCTCAAAAATGCCGCTAAATCCCCGAATGCTCAGAAAACAGCGTCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
48063654 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
* *
48063702 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTAG
1 GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
**
48063767 GTTTTTTGCGGCGCTTTCTGGAAAACGCCGCTAA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
48063801 TGCTTATTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 93 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (113 bp):
GCGGCGCTTCCTCAAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACAGCATCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAACATTA
Found at i:48071990 original size:27 final size:28
Alignment explanation
Indices: 48071950--48072032 Score: 78
Period size: 27 Copynumber: 2.9 Consensus size: 28
48071940 CATTTTATTT
*
48071950 AAAAATTAAAATACTTTAGAAATTTA-G
1 AAAAATTATAATACTTTAGAAATTTATG
* * *
48071977 AAAAATTATTATACATTATTAATATGTTATG
1 AAAAATTATAATACTTTA-GAA-AT-TTATG
*
48072008 AAAATATTATAATATTTTAGAAATT
1 AAAA-ATTATAATACTTTAGAAATT
48072033 ATATAGAATA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
27 15 0.35
28 2 0.05
29 3 0.07
30 5 0.12
31 7 0.16
32 11 0.26
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (28 bp):
AAAAATTATAATACTTTAGAAATTTATG
Found at i:48072020 original size:21 final size:21
Alignment explanation
Indices: 48071991--48072030 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
48071981 ATTATTATAC
48071991 ATTATTAATATGTTATGAAAAT
1 ATTATTAATATGTTA-GAAAAT
*
48072013 ATTA-TAATATTTTAGAAA
1 ATTATTAATATGTTAGAAA
48072031 TTATATAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTAATATGTTAGAAAAT
Found at i:48072037 original size:19 final size:20
Alignment explanation
Indices: 48071991--48072037 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
48071981 ATTATTATAC
48071991 ATTAT-TAATATGTTATGAA
1 ATTATATAATATGTTATGAA
* *
48072010 AATATTATAATATTTTA-GAA
1 ATTA-TATAATATGTTATGAA
48072030 ATTATATA
1 ATTATATA
48072038 GAATACTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 7 0.30
20 7 0.30
21 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (20 bp):
ATTATATAATATGTTATGAA
Found at i:48072112 original size:10 final size:10
Alignment explanation
Indices: 48072028--48072148 Score: 53
Period size: 10 Copynumber: 12.4 Consensus size: 10
48072018 AATATTTTAG
48072028 AAATTATATA
1 AAATTATATA
*
48072038 GAA-TACTATA
1 AAATTA-TATA
*
48072048 AAACTATATA
1 AAATTATATA
*
48072058 AATATT-T-TT
1 AA-ATTATATA
48072067 AAA-TATATA
1 AAATTATATA
48072076 AAA-TACTATA
1 AAATTA-TATA
* *
48072086 AAAGGTCATAGA
1 AAA--TTATATA
48072098 AAATTATATA
1 AAATTATATA
48072108 AAATT-TATTA
1 AAATTATA-TA
*
48072118 AAATGATA-A
1 AAATTATATA
* *
48072127 AAA-TAAAAA
1 AAATTATATA
48072136 AAATTATA-A
1 AAATTATATA
48072145 AAAT
1 AAAT
48072149 CATAAACATT
Statistics
Matches: 85, Mismatches: 13, Indels: 27
0.68 0.10 0.22
Matches are distributed among these distances:
7 1 0.01
8 4 0.05
9 26 0.31
10 41 0.48
11 6 0.07
12 6 0.07
13 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (10 bp):
AAATTATATA
Found at i:48072146 original size:9 final size:9
Alignment explanation
Indices: 48072097--48072154 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
48072087 AAGGTCATAG
48072097 AAAATTATA
1 AAAATTATA
*
48072106 TAAAATTTATT
1 -AAAA-TTATA
*
48072117 AAAATGATA
1 AAAATTATA
* *
48072126 AAAATAAAA
1 AAAATTATA
48072135 AAAATTATA
1 AAAATTATA
*
48072144 AAAATCATA
1 AAAATTATA
48072153 AA
1 AA
48072155 CATTTTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
9 27 0.69
10 8 0.21
11 4 0.10
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAATTATA
Found at i:48072851 original size:16 final size:16
Alignment explanation
Indices: 48072819--48072852 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48072809 ACAATTTAAT
* *
48072819 ATATTTTTTCATTTTA
1 ATATTTTTTAATATTA
48072835 ATATTTTTTAATATTA
1 ATATTTTTTAATATTA
48072851 AT
1 AT
48072853 TAGTTTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (16 bp):
ATATTTTTTAATATTA
Found at i:48074573 original size:14 final size:15
Alignment explanation
Indices: 48074544--48074577 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
48074534 TTGGAACCCT
*
48074544 ATTTAGATAGATTAG
1 ATTTAGAGAGATTAG
48074559 ATTTAGAGA-ATTAG
1 ATTTAGAGAGATTAG
48074573 ATTTA
1 ATTTA
48074578 CATTAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (15 bp):
ATTTAGAGAGATTAG
Found at i:48080890 original size:26 final size:26
Alignment explanation
Indices: 48080841--48080893 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
48080831 TGAAATATTA
* *
48080841 TCAAATCGAGTCGAGTAAAATGAAAT
1 TCAAATCGAATCGAATAAAATGAAAT
* *
48080867 TCAAATCGAATCGAATTAAGTGAAAT
1 TCAAATCGAATCGAATAAAATGAAAT
48080893 T
1 T
48080894 GTTCTAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.26
Consensus pattern (26 bp):
TCAAATCGAATCGAATAAAATGAAAT
Found at i:48081184 original size:23 final size:23
Alignment explanation
Indices: 48081142--48081201 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 23
48081132 TGTTTAGAGT
* * *
48081142 TTTTTAGAATATTAATTTTTATAA
1 TTTTTAAAATA-TAAATTTTAGAA
48081166 TTTTTAAAATATAAATTTTAGAA
1 TTTTTAAAATATAAATTTTAGAA
48081189 TTTTTATAAATAT
1 TTTTTA-AAATAT
48081202 TTTAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (23 bp):
TTTTTAAAATATAAATTTTAGAA
Found at i:48081205 original size:20 final size:20
Alignment explanation
Indices: 48081180--48081241 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 20
48081170 TAAAATATAA
48081180 ATTTTAGAATTTTTATAAAT
1 ATTTTAGAATTTTTATAAAT
*
48081200 ATTTTA-AA-TTTTAAAAATT
1 ATTTTAGAATTTTTATAAA-T
48081219 ATTTT-GAAATTTTT-TAAAT
1 ATTTTAG-AATTTTTATAAAT
48081238 -TTTT
1 ATTTT
48081242 GTTGAGACAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
18 12 0.33
19 9 0.25
20 11 0.31
21 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTTTAGAATTTTTATAAAT
Found at i:48083481 original size:54 final size:54
Alignment explanation
Indices: 48083413--48083556 Score: 157
Period size: 54 Copynumber: 2.7 Consensus size: 54
48083403 CTGTTGGGAT
**
48083413 AGTAAACACCGGGTAGTTCATCAGGACAGTAAACACGGGGTAG-TCTGTCAAGAC
1 AGTAAACATGGGGTAGTTCATCAGGACAGTAAACACGGGGTAGTTC-GTCAAGAC
* * * *
48083467 AGTAAACATGGGGTAGTTCAT-TGAGACAATAAATACGGGGTAGTTCGTCGAGAC
1 AGTAAACATGGGGTAGTTCATCAG-GACAGTAAACACGGGGTAGTTCGTCAAGAC
* * * * *
48083521 AATAAACGTGGGGTAGTTCGTCGGGAGAGTAAACAC
1 AGTAAACATGGGGTAGTTCATCAGGACAGTAAACAC
48083557 ATGGTTGTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.01
54 70 0.95
55 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (54 bp):
AGTAAACATGGGGTAGTTCATCAGGACAGTAAACACGGGGTAGTTCGTCAAGAC
Found at i:48083540 original size:27 final size:27
Alignment explanation
Indices: 48083415--48083591 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
48083405 GTTGGGATAG
* * *
48083415 TAAACACCGGGTAGTTCATC-AGGACAG
1 TAAACACGGGGTAGTTCGTCGA-GACAA
* *
48083442 TAAACACGGGGTAG-TCTGTCAAGACAG
1 TAAACACGGGGTAGTTC-GTCGAGACAA
* * *
48083469 TAAACATGGGGTAGTTCATTGAGACAA
1 TAAACACGGGGTAGTTCGTCGAGACAA
*
48083496 TAAATACGGGGTAGTTCGTCGAGACAA
1 TAAACACGGGGTAGTTCGTCGAGACAA
** * * *
48083523 TAAACGTGGGGTAGTTCGTCGGGAGAG
1 TAAACACGGGGTAGTTCGTCGAGACAA
** * * * *
48083550 TAAACACATGGTTGTTTGTTGAGACAG
1 TAAACACGGGGTAGTTCGTCGAGACAA
*
48083577 TAAACACGGGATAGT
1 TAAACACGGGGTAGT
48083592 CCACTAAGAC
Statistics
Matches: 117, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
26 2 0.02
27 112 0.96
28 3 0.03
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (27 bp):
TAAACACGGGGTAGTTCGTCGAGACAA
Found at i:48092533 original size:15 final size:15
Alignment explanation
Indices: 48092513--48092550 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
48092503 TTGAGAAATC
48092513 AAAAAGAAAAGAAAG
1 AAAAAGAAAAGAAAG
*
48092528 AAAAAGAAAAGAGAG
1 AAAAAGAAAAGAAAG
*
48092543 AAGAAGAA
1 AAAAAGAA
48092551 GAAAAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAGAAAG
Found at i:48093267 original size:26 final size:27
Alignment explanation
Indices: 48093238--48093294 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
48093228 TAAACAACTT
48093238 AATTACATTACACATATTT-TTTTAAA
1 AATTACATTACACATATTTATTTTAAA
*** * *
48093264 AATTTGTTTACATATTTTTATTTTAAA
1 AATTACATTACACATATTTATTTTAAA
48093291 AATT
1 AATT
48093295 GAGAAATACA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (27 bp):
AATTACATTACACATATTTATTTTAAA
Found at i:48098917 original size:20 final size:20
Alignment explanation
Indices: 48098874--48098935 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
48098864 ATAAACATTC
*
48098874 AATTAAATTTAATACTAAGAT
1 AATT-AATTTAATATTAAGAT
48098895 AATTAATTTAATATTAA-ATT
1 AATTAATTTAATATTAAGA-T
**
48098915 AA-TAAAATAATATTAAGAT
1 AATTAATTTAATATTAAGAT
48098934 AA
1 AA
48098936 ATATAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 16 0.44
20 16 0.44
21 4 0.11
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTAATTTAATATTAAGAT
Found at i:48098975 original size:68 final size:69
Alignment explanation
Indices: 48098834--48098978 Score: 161
Period size: 68 Copynumber: 2.1 Consensus size: 69
48098824 TTAATCACTT
* * **
48098834 TAATATTAAATTAAACTAATATTTATCAAGATAAACATTCAATTAAATTTAATACTAAGATAATT
1 TAATATTAAATTAAACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGATAATT
**
48098899 AATT
66 AAAA
* * * *
48098903 TAATATTAAATTAATA-AAATA-ATATTAAGATAAATATAAAATTAAATTTAATATTAA-ATCTA
1 TAATATTAAATTAA-ACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGAT-AA
48098965 TTAAAA
64 TTAAAA
48098971 TAATATTA
1 TAATATTA
48098979 CTTTTGAAAT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
67 2 0.03
68 43 0.67
69 18 0.28
70 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.39
Consensus pattern (69 bp):
TAATATTAAATTAAACAAATATATATCAAGATAAACATAAAATTAAATTTAATACTAAGATAATT
AAAA
Found at i:48104732 original size:14 final size:14
Alignment explanation
Indices: 48104713--48104744 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
48104703 CTAATTAAAT
*
48104713 ATATAGATATACAC
1 ATATAGATACACAC
48104727 ATATAGATACACAC
1 ATATAGATACACAC
48104741 ATAT
1 ATAT
48104745 CATACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.16, G:0.06, T:0.28
Consensus pattern (14 bp):
ATATAGATACACAC
Found at i:48109466 original size:23 final size:24
Alignment explanation
Indices: 48109430--48109474 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
48109420 TAGTCATTTA
* *
48109430 TTTTAATTTTTTTATT-TAAAAGT
1 TTTTAAGTTATTTATTATAAAAGT
48109453 TTTTAAGTTATTTATTATAAAA
1 TTTTAAGTTATTTATTATAAAA
48109475 ATAAATGTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTAAGTTATTTATTATAAAAGT
Found at i:48122180 original size:40 final size:39
Alignment explanation
Indices: 48122115--48122375 Score: 301
Period size: 40 Copynumber: 6.6 Consensus size: 39
48122105 TACATCGTCA
* *
48122115 GATCC-ACCGAACACACTAGACAGAAGCTCATAAGAGCT
1 GATCCAACCGAACACACCAAACAGAAGCTCATAAGAGCT
* * *
48122153 AATCCACCCGAAGTACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCGAA-CACACCAAACAGAAGCTCATAAGAGCT
48122193 GATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCG-AACACACCAAACAGAAGCTCATAAGAGCT
* * * *
48122233 GATCC-ACTTGAAGCACACTAGACAGAAACTCATAAGAGCT
1 GATCCAAC-CGAA-CACACCAAACAGAAGCTCATAAGAGCT
*
48122273 GATCCAATCGTAACACACCAAACAGAAGCTCATAAGAGCT
1 GATCCAACCG-AACACACCAAACAGAAGCTCATAAGAGCT
* ** *
48122313 GATCCAACTGTAACATGCCAAACAAAAGCTCATAAGAGCT
1 GATCCAACCG-AACACACCAAACAGAAGCTCATAAGAGCT
* *
48122353 GGTCCAACCGAAACACGCCAAAC
1 GATCCAACCG-AACACACCAAAC
48122376 TGAAAGTATA
Statistics
Matches: 190, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
38 4 0.02
39 9 0.05
40 172 0.91
41 5 0.03
ACGTcount: A:0.41, C:0.29, G:0.16, T:0.14
Consensus pattern (39 bp):
GATCCAACCGAACACACCAAACAGAAGCTCATAAGAGCT
Found at i:48122291 original size:120 final size:120
Alignment explanation
Indices: 48122126--48122358 Score: 360
Period size: 120 Copynumber: 1.9 Consensus size: 120
48122116 ATCCACCGAA
* * *
48122126 CACACTAGACAGAAGCTCATAAGAGCTAATCCACCCGAAGTACACCAAACAGAAGCTCATAAGAG
1 CACACTAGACAGAAACTCATAAGAGCTAATCCAACCGAAGCACACCAAACAGAAGCTCATAAGAG
*
48122191 CTGATCCAACCGTAACACACCAAACAGAAGCTCATAAGAGCTGATCCACTTGAAG
66 CTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCTGATCCACTTGAAG
* *
48122246 CACACTAGACAGAAACTCATAAGAGCTGATCCAATCGTAA-CACACCAAACAGAAGCTCATAAGA
1 CACACTAGACAGAAACTCATAAGAGCTAATCCAACCG-AAGCACACCAAACAGAAGCTCATAAGA
* ** *
48122310 GCTGATCCAACTGTAACATGCCAAACAAAAGCTCATAAGAGCTGGTCCA
65 GCTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCTGATCCA
48122359 ACCGAAACAC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
120 100 0.98
121 2 0.02
ACGTcount: A:0.41, C:0.27, G:0.16, T:0.15
Consensus pattern (120 bp):
CACACTAGACAGAAACTCATAAGAGCTAATCCAACCGAAGCACACCAAACAGAAGCTCATAAGAG
CTGATCCAACCGTAACACACCAAACAAAAGCTCATAAGAGCTGATCCACTTGAAG
Found at i:48128705 original size:61 final size:61
Alignment explanation
Indices: 48128635--48128765 Score: 149
Period size: 61 Copynumber: 2.1 Consensus size: 61
48128625 ATGTATGCAT
* * * * *
48128635 TATATATATGTGGTTTGAATATAGGT-TACAAATTCA-TTGAGCTAAATTTAATGTTTTGAAC
1 TATATATATGAGGTTCGAATATA-ATATACAAATT-ATTTGAGCTAAACTTAATGTTATGAAC
* * * *
48128696 TATACATATGAGGTTCGAATGTAATATACAAGTTATTTGAGCTAAACTTAATGTTATGAAT
1 TATATATATGAGGTTCGAATATAATATACAAATTATTTGAGCTAAACTTAATGTTATGAAC
48128757 TATATATAT
1 TATATATAT
48128766 TTATTCATGT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
60 2 0.03
61 56 0.97
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (61 bp):
TATATATATGAGGTTCGAATATAATATACAAATTATTTGAGCTAAACTTAATGTTATGAAC
Found at i:48128923 original size:41 final size:41
Alignment explanation
Indices: 48128878--48129013 Score: 218
Period size: 41 Copynumber: 3.3 Consensus size: 41
48128868 GCTCTATACT
* * *
48128878 TAGCAAGCTTAATGCCAGTGAAATAATTCAGACTTTATGTC
1 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
*
48128919 TAGCAGGCTTAATGCCGGTGAAATATTTCAGACTTTACGTC
1 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
* *
48128960 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACATT
1 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
48129001 TAGCAGGCTTAAT
1 TAGCAGGCTTAAT
48129014 ACCGATGTTC
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACGTC
Found at i:48129045 original size:82 final size:82
Alignment explanation
Indices: 48128878--48129063 Score: 196
Period size: 82 Copynumber: 2.3 Consensus size: 82
48128868 GCTCTATACT
* ** * *
48128878 TAGCAAGCTTAATGCCAGTGAAATAATTCAGACTTTATGTCTAGCAGGCTTAATGCCGGTGAAAT
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACATCTAGCAGGCTTAATACCGATGAAAT
* * * *
48128943 ATTTCAGACTTTACGTC
66 ATATCAGACGTTAAGCC
* * ***
48128960 TAGCAGGCTTAATGCCAGTGAAATATTTCAGACTTTACATTTAGCAGGCTTAATACCGATGTTCT
1 TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACATCTAGCAGGCTTAATACCGATGAAAT
*
48129025 GA-ATCAGGCGTTAAGCC
66 -ATATCAGACGTTAAGCC
*
48129042 TAGCAGGC-TACATGCTAGTGAA
1 TAGCAGGCTTA-ATGCCAGTGAA
48129064 TCATTTTAAA
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 2 0.02
82 83 0.97
83 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (82 bp):
TAGCAGGCTTAATGCCAGTGAAATAATTCAGACTTTACATCTAGCAGGCTTAATACCGATGAAAT
ATATCAGACGTTAAGCC
Found at i:48132141 original size:11 final size:10
Alignment explanation
Indices: 48132118--48132159 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
48132108 CACTAAATCA
48132118 AAAATATTTGG
1 AAAA-ATTTGG
48132129 AAAAATTTAGG
1 AAAAATTT-GG
48132140 AAAAATTT-G
1 AAAAATTTGG
48132149 AAAAATTTGG
1 AAAAATTTGG
48132159 A
1 A
48132160 CTGCAGGGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 9 0.31
10 6 0.21
11 14 0.48
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (10 bp):
AAAAATTTGG
Found at i:48154970 original size:40 final size:40
Alignment explanation
Indices: 48154872--48155095 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
48154862 TCCTCGTTCA
* * * * *
48154872 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48154911 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48154951 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48154991 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
48155031 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48155071 AAGGCCTTC-GGATCTTAATCCGGAT
1 AATGCCTTCGGGA-CTTAACCCGGAT
48155096 ATATTCACTT
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.22
40 134 0.78
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48155118 original size:80 final size:80
Alignment explanation
Indices: 48154875--48155133 Score: 274
Period size: 80 Copynumber: 3.3 Consensus size: 80
48154865 TCGTTCAAAT
* * * * * * * *
48154875 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* * *
48154939 ACAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
48154954 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
48155019 ATAACTCGCACGAAT
66 ATAACTAGCACGAAA
* * *
48155034 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
* *
48155098 ATTCACTTAGCAC-AAA
65 AATAAC-TAGCACGAAA
*
48155114 GCCTTC-GGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
48155134 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
79 47 0.30
80 107 0.67
81 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ATAACTAGCACGAAA
Found at i:48155118 original size:120 final size:118
Alignment explanation
Indices: 48154870--48155133 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 118
48154860 GCTCCTCGTT
* * *
48154870 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGA
* * * *
48154935 TTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * *
48154989 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 C-AAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGG
** * * * *
48155054 ATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
64 ATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
48155110 CAAAGCCTTC-GGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
48155134 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
119 48 0.39
120 69 0.57
121 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (118 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:48155142 original size:40 final size:41
Alignment explanation
Indices: 48155066--48155142 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 41
48155056 TTAGTATCTC
* * *
48155066 GCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
*
48155107 GCACAAA-GCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTCGGATCTTAACCCGGACA-CATTCA
48155143 ATTAATCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
39 10 0.32
40 14 0.45
41 7 0.23
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAACCCGGACACATTCACTTA
Found at i:48162915 original size:40 final size:40
Alignment explanation
Indices: 48162817--48163079 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
48162807 TCCTCGTTCA
* * * * *
48162817 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
48162856 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48162896 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
48162936 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
48162976 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGTACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
48163016 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
48163056 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
48163080 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 154 0.78
41 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:48179832 original size:16 final size:17
Alignment explanation
Indices: 48179811--48179842 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48179801 AAATATGCAA
48179811 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
48179827 TCACATAACTTCATAT
1 TCACATAACTTCATAT
48179843 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:48180101 original size:41 final size:42
Alignment explanation
Indices: 48180003--48180119 Score: 139
Period size: 41 Copynumber: 2.8 Consensus size: 42
48179993 GACTCGTACA
* * * *
48180003 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGAC-AGGTCTTACACGTAATCAAATATCG
* *
48180046 ATGCCACTATCCCAGACAGGATCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACAGG-TCTTACACGTAATCAAATATCG
48180087 ATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATGCCAATGTCCCAGACA-GGTCTTACACGTAA
48180120 ACACAAGTCA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 27 0.43
42 14 0.22
43 22 0.35
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGTCTTACACGTAATCAAATATCG
Found at i:48187336 original size:43 final size:43
Alignment explanation
Indices: 48187275--48187444 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
48187265 AAGACTCGTA
*
48187275 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
*
48187318 CAATGCC-ACTGTCCCAGACAG-GGTCTTACACG-AATCAAATAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATAT
* * * * *
48187360 -GATGCCAATGTCCCAGACATGGTCTTACATGTAAACACA-AGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATA-T
* *
48187402 CGATGCCAACGTCCCAAACGTGGTCTTACACGATAA-CACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCACATAT
48187445 TAGAAATCCT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
41 25 0.24
42 18 0.17
43 58 0.55
44 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
Found at i:48187427 original size:84 final size:84
Alignment explanation
Indices: 48187277--48187434 Score: 223
Period size: 84 Copynumber: 1.9 Consensus size: 84
48187267 GACTCGTACA
* * *
48187277 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAACACATATCAATGCCACTGTCCCAAACAGGGT
48187342 CTTACACGAATCAAATATG
66 CTTACACGAATCAAATATG
* *
48187361 ATGCCAATGTCCCAGACATGGTCTTACATGTAAACACA-AGTCGATGCCAAC-GTCCCAAAC-GT
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAAACACATA-TCAATGCC-ACTGTCCCAAACAG-
48187423 GGTCTTACACGA
63 GGTCTTACACGA
48187435 TAACACATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
83 2 0.03
84 62 0.94
85 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAAACACATATCAATGCCACTGTCCCAAACAGGGT
CTTACACGAATCAAATATG
Found at i:48187951 original size:9 final size:9
Alignment explanation
Indices: 48187937--48187970 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
48187927 CAAGCCCACA
48187937 TATTTCATT
1 TATTTCATT
**
48187946 TATTTCACA
1 TATTTCATT
48187955 TATTTCATT
1 TATTTCATT
48187964 TATTTCA
1 TATTTCA
48187971 CATTTTAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (9 bp):
TATTTCATT
Found at i:48187956 original size:18 final size:18
Alignment explanation
Indices: 48187933--48187973 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
48187923 CATACAAGCC
48187933 CACATATTTCATTTATTT
1 CACATATTTCATTTATTT
48187951 CACATATTTCATTTATTT
1 CACATATTTCATTTATTT
48187969 CACAT
1 CACAT
48187974 TTTAGTCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (18 bp):
CACATATTTCATTTATTT
Found at i:48192883 original size:6 final size:6
Alignment explanation
Indices: 48192872--48192896 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
48192862 AGACGGAGAA
48192872 AACCTC AACCTC AACCTC AACCTC A
1 AACCTC AACCTC AACCTC AACCTC A
48192897 TTCTCTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
AACCTC
Found at i:48195356 original size:59 final size:61
Alignment explanation
Indices: 48195258--48195380 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 61
48195248 TTTTATTATG
48195258 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
* * *
48195319 CCAATAT-TTGATACCCATATC-TTGACTTTCCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
48195378 CCA
1 CCA
48195381 TAAATATGGA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 39 0.66
60 13 0.22
61 7 0.12
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (61 bp):
CCAATATCTCGATACCCATATCTTTGACTTTCCAATATTTGATACCCATATCTTTGACTTT
Found at i:48195381 original size:30 final size:30
Alignment explanation
Indices: 48195258--48195380 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
48195248 TTTTATTATG
*
48195258 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
48195289 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
48195319 CCAATATTTGATACCCATATC-TTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
48195348 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
48195378 CCA
1 CCA
48195381 TAAATATGGA
Statistics
Matches: 88, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
29 28 0.32
30 53 0.60
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:48200010 original size:15 final size:15
Alignment explanation
Indices: 48199963--48200041 Score: 56
Period size: 15 Copynumber: 5.3 Consensus size: 15
48199953 TACCCATATC
48199963 TTTGAC-TTCCAATA
1 TTTGACTTTCCAATA
** *
48199977 TTTGA-TACCCATATC
1 TTTGACTTTCCA-ATA
48199992 TTTGACTTTCCAATA
1 TTTGACTTTCCAATA
** *
48200007 TTTGA-TACCCATATC
1 TTTGACTTTCCA-ATA
*
48200022 TTTGACTTTCCATTA
1 TTTGACTTTCCAATA
48200037 TTTGA
1 TTTGA
48200042 TACCCATATC
Statistics
Matches: 47, Mismatches: 13, Indels: 9
0.68 0.19 0.13
Matches are distributed among these distances:
14 12 0.26
15 27 0.57
16 8 0.17
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.46
Consensus pattern (15 bp):
TTTGACTTTCCAATA
Found at i:48200064 original size:30 final size:30
Alignment explanation
Indices: 48199941--48200063 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
48199931 TTTTATTATG
*
48199941 CCAATATCTCGATACCCATATCTTTGAC-TT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
48199971 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
48200001 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
48200031 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
48200061 CCA
1 CCA
48200064 TAAATATGGA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
29 19 0.21
30 70 0.79
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:48203370 original size:21 final size:21
Alignment explanation
Indices: 48203346--48203433 Score: 88
Period size: 21 Copynumber: 4.2 Consensus size: 21
48203336 CCATAAAGGT
* *
48203346 TAAACTGAAGCTCAAAAGAGC
1 TAAACTGAAACTCATAAGAGC
* * *
48203367 TAAACTGAAACCCAGAAGGGC
1 TAAACTGAAACTCATAAGAGC
* *
48203388 TAAACTAAAACTCATATGAG-
1 TAAACTGAAACTCATAAGAGC
* *
48203408 TTAACTGAAGCTCATAAGAGC
1 TAAACTGAAACTCATAAGAGC
48203429 TAAAC
1 TAAAC
48203434 AAAAAGAAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 16 0.31
21 36 0.69
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.18
Consensus pattern (21 bp):
TAAACTGAAACTCATAAGAGC
Found at i:48203392 original size:42 final size:42
Alignment explanation
Indices: 48203310--48203393 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
48203300 GGGTTAAATG
* * * * * *
48203310 GAAGCTTATAAGAGCTGAACGGAAATCCATAAAGGTTAAACT
1 GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
* *
48203352 GAAGCTCAAAAGAGCTAAACTGAAACCCAGAAGGGCTAAACT
1 GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
48203394 AAAACTCATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
GAAGCTCAAAAGAGCTAAACGGAAACCCAGAAAGGCTAAACT
Found at i:48209158 original size:41 final size:41
Alignment explanation
Indices: 48209101--48209206 Score: 185
Period size: 41 Copynumber: 2.6 Consensus size: 41
48209091 AATGAGATAA
* *
48209101 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
48209142 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
*
48209183 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
48209207 AATTGCCAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTGAAATAT
Found at i:48210377 original size:12 final size:12
Alignment explanation
Indices: 48210360--48210390 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
48210350 TATTCATACG
48210360 ATTTTTATATAT
1 ATTTTTATATAT
48210372 ATTTTTATATAT
1 ATTTTTATATAT
48210384 ATTTTTA
1 ATTTTTA
48210391 AAACCTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATTTTTATATAT
Found at i:48210444 original size:24 final size:24
Alignment explanation
Indices: 48210400--48210445 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
48210390 AAAACCTTTA
*
48210400 TATACTTTATATTTTATATATACT
1 TATACTTTATATTTTAAATATACT
*
48210424 TATACTTT-TTTTTGTAAATATA
1 TATACTTTATATTT-TAAATATA
48210446 TACACATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (24 bp):
TATACTTTATATTTTAAATATACT
Found at i:48214636 original size:18 final size:18
Alignment explanation
Indices: 48214601--48214638 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
48214591 TTGAGTCATT
*
48214601 AAAAAATGATGAAATGAA
1 AAAAAATGATAAAATGAA
48214619 AAAAAATGA-AAAAGTGAA
1 AAAAAATGATAAAA-TGAA
48214637 AA
1 AA
48214639 GGAAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (18 bp):
AAAAAATGATAAAATGAA
Found at i:48214637 original size:23 final size:23
Alignment explanation
Indices: 48214610--48214662 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
48214600 TAAAAAATGA
48214610 TGAAATGAAAAAAAAT-GAAAAAG
1 TGAAATG-AAAAAAATGGAAAAAG
* *
48214633 TGAAAAGGAAAAAATGGAAAAAG
1 TGAAATGAAAAAAATGGAAAAAG
*
48214656 TAAAATG
1 TGAAATG
48214663 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (23 bp):
TGAAATGAAAAAAATGGAAAAAG
Found at i:48214647 original size:22 final size:22
Alignment explanation
Indices: 48214619--48214660 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
48214609 ATGAAATGAA
48214619 AAAAAAT-GAAAAAGTGAAAAGG
1 AAAAAATGGAAAAAGT-AAAAGG
48214641 AAAAAATGGAAAAAGTAAAA
1 AAAAAATGGAAAAAGTAAAA
48214661 TGGAGAGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (22 bp):
AAAAAATGGAAAAAGTAAAAGG
Found at i:48216778 original size:397 final size:392
Alignment explanation
Indices: 48215922--48217179 Score: 1704
Period size: 397 Copynumber: 3.2 Consensus size: 392
48215912 CTGCATAGAC
* * * * *
48215922 AGTGAAGCAGATCGAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTAGTTACAGTGGAGTACATTGAAGCCA
* *
48215987 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCA
66 GTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC-
* * *
48216052 ATAGTGGAGCAAATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAG
130 ATAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAG
* *
48216116 CCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAAATCTTGCCTCCCTAA
194 CCAGTAATTCTACTTCCCT-GGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCT-A
* ** *
48216181 GCAGTAGTGGAGCAGGTCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGA
257 GCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCTC-GTGGTTACAGTGGAGTACATTGA
* * * *
48216246 AGCCAATAATTCTACTTCTCTGGGCAGCAGCAGAATAGATTGAAGATTTCAGATCTTGCCTCCCT
321 AGCCAGTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCCCT
48216311 AAGCAGT
386 AAGCAGT
* *
48216318 AGTGGAGCAGGTCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTAGTTACAGTGGAGTACATTGAAGCCA
* * *
48216383 ATAATTCTACTTCCCTAGGCAGTAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
* * *
48216448 GTAGTGGAGCAGATCAAAAATGGCAGATTTTACCTCTCTGTGGTTACAGTGGAGTATATTGAAGC
131 -TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * *
48216513 CAGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTTCCT-GC
195 CAGTAATTCTACTTCCCTGG-CAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAGC
* * *
48216577 A-TAGACAGCGAAGCAAATCGAAGATGGCAGATTTTACCTCATCGTGGTTACAGTGGAGTACATT
259 AGTAG--TG-G-AGCAGATCAAAGATGGCAGATTTTACCTC-TCGTGGTTACAGTGGAGTACATT
*
48216641 AAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCC
319 GAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCC
48216706 CTAAGCAGT
384 CTAAGCAGT
* *
48216715 AGTGGGGCAGATCAAAGATGGCGGATTTTACCT-CATCGTAGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCT-GTAGTTACAGTGGAGTACATTGAAGCC
** ** * * *
48216779 AGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCT--GC
65 AGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
* *
48216842 ATAGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTG
130 ATAG-T-G-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTG
** * *
48216907 AAGTTAGTAATTCTACTTCCCTAGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTCTCCC
191 AAGCCAGTAATTCTACTTCCCT-GGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCC
* *
48216972 TAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGCGGAGTACAT
255 T-AGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACCT-CTCGTGGTTACAGTGGAGTACAT
* * *
48217037 TGAAGCCAGTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCT
318 TGAAGCCAGTAATTCTACT-TCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCT
*
48217101 CCCTAGGCAGT
382 CCCTAAGCAGT
* * * * * *
48217112 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTTCTTG-ATGTTATAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTA-GTTACAGTGGAGTACATTGAAGCC
48217176 AGTA
65 AGTA
48217180 TTCCTATCTC
Statistics
Matches: 766, Mismatches: 75, Indels: 41
0.87 0.09 0.05
Matches are distributed among these distances:
393 3 0.00
394 6 0.01
395 8 0.01
396 235 0.31
397 395 0.52
398 110 0.14
399 3 0.00
400 3 0.00
401 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (392 bp):
AGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTAGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
AGTAATTCTACTTCCCTGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAGCAG
TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCTCGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GT
Found at i:48217137 original size:44 final size:44
Alignment explanation
Indices: 48216924--48217137 Score: 137
Period size: 44 Copynumber: 4.9 Consensus size: 44
48216914 TAATTCTACT
* * ** *
48216924 TCCCTAGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* * * ** * *
48216968 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAGATTTTACC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* * * * * *** *
48217012 TCCTTGTGGTTA-CAGCGGAGTACATTGAAGCCAGTA-AT-TCTATC
1 TCCCT-AGG-CAGCAGTGGAGTAGATTGAAGATGGCAGATCT-TATC
* * **
48217056 TCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATC
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
* *
48217100 TCCCTAGGCAGTAGTGGAGTAGATCGAAGATGGCAGAT
1 TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGAT
48217138 TTTACCTTCT
Statistics
Matches: 120, Mismatches: 44, Indels: 12
0.68 0.25 0.07
Matches are distributed among these distances:
42 1 0.01
43 19 0.16
44 83 0.69
45 16 0.13
46 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (44 bp):
TCCCTAGGCAGCAGTGGAGTAGATTGAAGATGGCAGATCTTATC
Found at i:48217190 original size:132 final size:132
Alignment explanation
Indices: 48215922--48217179 Score: 1703
Period size: 132 Copynumber: 9.5 Consensus size: 132
48215912 CTGCATAGAC
* * *
48215922 AGTGAAGCAGATCGAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
*
48215986 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGC
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
*
48216051 AAT
130 AGT
* * *
48216054 AGTGGAGCAAATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* * *
48216118 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATTTCAAATCTTGCCTCCCTAAGC
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
48216183 AGT
130 AGT
* **
48216186 AGTGGAGCAGGTCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * ** *
48216251 ATAATTCTACTTCTCTGGGCAGCAGCAGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
48216316 GT
131 GT
* *
48216318 AGTGGAGCAGGTCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * * *
48216383 ATAATTCTACTTCCCTAGGCAGTAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
48216448 GT
131 GT
* * *
48216450 AGTGGAGCAGATCAAAAATGGCAGATTTTACCTCTCTGTGGTTACAGTGGAGTATATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * ** *
48216515 GTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTTCCT--GCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
48216578 -T
131 GT
* * * * *
48216579 AGACAGCGAAGCAAATCGAAGATGGCAGATTTTACCT-CATCGTGGTTACAGTGGAGTACATTAA
1 AG--TG-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGA
*
48216643 AGCCAGTAATTCTACTTCCCTGGGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCCCT
61 AGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCT
48216708 AAGCAGT
126 AAGCAGT
* * * *
48216715 AGTGGGGCAGATCAAAGATGGCGGATTTTACCT-CATCGTAGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTGAAGCC
* ** ** * * *
48216779 AGTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCT--GC
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
48216842 A-T
130 AGT
* *
48216844 AGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
1 AG-T-G-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
** * *
48216909 GTTAGTAATTCTACTTCCCTAGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
62 GCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
48216974 AGCAGT
127 AGCAGT
* *
48216980 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGCGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
* * *
48217045 GTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGC
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
48217109 AGT
130 AGT
* * * * *
48217112 AGTGGAGTAGATCGAAGATGGCAGATTTTACCTTCTTGAT-GTTATAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-TGGTTACAGTGGAGTACATTGAAGCC
48217176 AGTA
65 AGTA
48217180 TTCCTATCTC
Statistics
Matches: 1006, Mismatches: 101, Indels: 38
0.88 0.09 0.03
Matches are distributed among these distances:
129 6 0.01
130 7 0.01
131 3 0.00
132 761 0.76
133 212 0.21
134 4 0.00
135 7 0.01
136 6 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GT
Done.