Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 161 of 213
Found at i:48217257 original size:265 final size:263
Alignment explanation
Indices: 48215922--48217179 Score: 1685
Period size: 265 Copynumber: 4.8 Consensus size: 263
48215912 CTGCATAGAC
* * * *
48215922 AGTGAAGCAGATCGAAGATGG-TGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCC
* *
48215986 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGC
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCT-CCCTAGC
* * *
48216051 AATAGTGGAGCAAATCAAAGATGG-TGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAA
129 -ATAGTGGAGCAGATCAAAGATGGCAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
* *
48216115 GCCAGTAATTCTACTTCCCTG-GGCAGCAGTGGAATAGATTAAAGATTTCAAATCTTGCCTCCCT
192 GCCAGTAATTCTACTTCCCTGAGGCAGCAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCT
48216179 AAGCAGT
257 AAGCAGT
* ** *
48216186 AGTGGAGCAGGTCAAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
* * **
48216251 ATAATTCTACTTCTCTGGGCAGCAGCAGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCT-AGCA
* *
48216316 GTAGTGGAGCAGGTCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
130 -TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* *
48216381 CAATAATTCTACTTCCCT-AGGCAGTAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAA
194 CAGTAATTCTACTTCCCTGAGGCAGCAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAA
48216445 GCAGT
259 GCAGT
* *
48216450 AGTGGAGCAGATCAAAAATGGCAGATTTTACCT-CTCTGTGGTTACAGTGGAGTATATTGAAGCC
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCT-TGTGGTTACAGTGGAGTACATTGAAGCC
* * * *
48216514 AGTAATTCTACTTCCCTGGACAGCAGTGGAATAGATTGAAGATTTTAGATCTTACCTTCCT-GCA
65 AGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAGCA
* * * * *
48216578 TAGACAGCGAAGCAAATCGAAGATGGCAGATTTTACCT-CATCGTGGTTACAGTGGAGTACATTA
130 TAG--TG-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCT-GTGGTTACAGTGGAGTACATTG
* *
48216642 AAGCCAGTAATTCTACTTCCCTG-GGCAGCAGTAGAATAGATTGAAGATTTCAGATCTTGTCTCC
190 AAGCCAGTAATTCTACTTCCCTGAGGCAGCAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCC
48216706 CTAAGCAGT
255 CTAAGCAGT
* * * * *
48216715 AGTGGGGCAGATCAAAGATGGCGGATTTTACCTCATCGTAGTTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
* ** ** * *
48216780 GTAATTCTACTTCCCTAGGCAGCAGTGGAATAGATCAAAGATAACAGATCTCGCCTTCCT-GCAT
66 GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAGCAT
* *
48216844 AGATAGCGAAGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
131 AG-T-G-G-AGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
** * *
48216909 GTTAGTAATTCTACTTCCCT-AGGCAGCAGTGAAATAGATTGAAGATTTCAGATCTTGTCTCCCT
192 GCCAGTAATTCTACTTCCCTGAGGCAGCAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCT
48216973 AAGCAGT
257 AAGCAGT
*
48216980 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGCGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
* **
48217045 GTAATTCTA-TCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAGGC
66 GTAATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTA-GC
* * * * *
48217109 AGTAGTGGAGTAGATCGAAGATGGCAGATTTTACCTTCTTGAT-GTTATAGTGGAGTACATTGAA
129 A-TAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTG-TGGTTACAGTGGAGTACATTGAA
48217173 GCCAGTA
192 GCCAGTA
48217180 TTCCTATCTC
Statistics
Matches: 879, Mismatches: 94, Indels: 42
0.87 0.09 0.04
Matches are distributed among these distances:
261 3 0.00
262 3 0.00
263 6 0.01
264 400 0.46
265 456 0.52
266 4 0.00
267 4 0.00
268 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (263 bp):
AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTGCCTCCCTAGCAT
AGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGAGGCAGCAGTGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGC
AGT
Found at i:48218620 original size:13 final size:13
Alignment explanation
Indices: 48218602--48218628 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48218592 CATTATATCG
48218602 TTATTTATTATTA
1 TTATTTATTATTA
48218615 TTATTTATTATTA
1 TTATTTATTATTA
48218628 T
1 T
48218629 GGTTATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:48218703 original size:27 final size:26
Alignment explanation
Indices: 48218680--48218757 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 26
48218670 ATAATATATT
* *
48218680 TATATATGCATTTTTTATATATATAG
1 TATATACGCATTTTTTATATATATAA
* *
48218706 CACATACGCATATTTTTATATATATAA
1 TATATACGCAT-TTTTTATATATATAA
*
48218733 TATATAGGCATTTTTT-TAATATATA
1 TATATACGCATTTTTTAT-ATATATA
48218758 CGTTTTTAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 1 0.02
26 20 0.47
27 22 0.51
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (26 bp):
TATATACGCATTTTTTATATATATAA
Found at i:48222963 original size:16 final size:16
Alignment explanation
Indices: 48222942--48222978 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
48222932 AATTGCCTAC
48222942 TCCACTACATTAGCTT
1 TCCACTACATTAGCTT
*
48222958 TCCACTACCTTAGCTT
1 TCCACTACATTAGCTT
48222974 TCCAC
1 TCCAC
48222979 AACTAAGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.38, G:0.05, T:0.35
Consensus pattern (16 bp):
TCCACTACATTAGCTT
Found at i:48227554 original size:30 final size:30
Alignment explanation
Indices: 48227511--48227581 Score: 124
Period size: 30 Copynumber: 2.3 Consensus size: 30
48227501 TGTTACATTT
*
48227511 AATTTCAAATATCACAGGTAAATTAAATTAA
1 AATTT-AAGTATCACAGGTAAATTAAATTAA
48227542 AATTTAAGTATCACAGGTAAATTAAATTAA
1 AATTTAAGTATCACAGGTAAATTAAATTAA
48227572 AATTTAAGTA
1 AATTTAAGTA
48227582 ATTCATCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 34 0.87
31 5 0.13
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (30 bp):
AATTTAAGTATCACAGGTAAATTAAATTAA
Found at i:48228020 original size:5 final size:6
Alignment explanation
Indices: 48228009--48228034 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
48227999 ATAAATAAAA
48228009 TATTTT TATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TA
48228035 AAAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:48228785 original size:91 final size:92
Alignment explanation
Indices: 48228674--48228878 Score: 306
Period size: 92 Copynumber: 2.2 Consensus size: 92
48228664 TGCTTAAAAT
* * * **
48228674 TTAAATTCATTTATTCTAAATGTTTAATAGGAAT-GGAAAATATTTTAATAGAAAACTAATAGTA
1 TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
48228738 A-AGTAGAGTATTTTCCAAAAGAAAGGC
66 ACA-TAGAGTATTTTCCAAAAGAAAGGC
*
48228765 TTAAATTTATTCATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
1 TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
* *
48228830 ACATAGAGTATTTTCTAAAGGAAAGGC
66 ACATAGAGTATTTTCCAAAAGAAAGGC
*
48228857 TTAAATTTATTTGTTTTAAATG
1 TTAAATTTATTTATTTTAAATG
48228879 ACGGCTTGTG
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
91 30 0.29
92 71 0.70
93 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (92 bp):
TTAAATTTATTTATTTTAAATGTTTAATAAGAATAAAAAAATATTTTAATAGAAAACTAATAGTA
ACATAGAGTATTTTCCAAAAGAAAGGC
Found at i:48232939 original size:20 final size:20
Alignment explanation
Indices: 48232918--48233015 Score: 81
Period size: 20 Copynumber: 4.9 Consensus size: 20
48232908 GTATGATTGT
*
48232918 ACATACGTGCCCCTGTTTGT
1 ACATACGTGCCCCTGTTTGC
* ** * * *
48232938 ACCTTGGTACCCATGATTGC
1 ACATACGTGCCCCTGTTTGC
48232958 ACATACGTGCCCCTGTTTGC
1 ACATACGTGCCCCTGTTTGC
* * * *
48232978 AC-TTCGGTACACCTGATTGC
1 ACATAC-GTGCCCCTGTTTGC
48232998 ACATACGTGCCCCTGTTT
1 ACATACGTGCCCCTGTTT
48233016 ATACTTTGGT
Statistics
Matches: 55, Mismatches: 21, Indels: 4
0.69 0.26 0.05
Matches are distributed among these distances:
19 2 0.04
20 51 0.93
21 2 0.04
ACGTcount: A:0.17, C:0.32, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATACGTGCCCCTGTTTGC
Found at i:48232954 original size:40 final size:41
Alignment explanation
Indices: 48232910--48233028 Score: 172
Period size: 40 Copynumber: 3.0 Consensus size: 41
48232900 AAATTATTGT
*
48232910 ATGATTGTACATACGTGCCCCTGTTTGTACCTTGGTAC-CC
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACACC
*
48232950 ATGATTGCACATACGTGCCCCTGTTTGCA-CTTCGGTACACC
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTT-GGTACACC
* *
48232991 -TGATTGCACATACGTGCCCCTGTTTATACTTTGGTACA
1 ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACA
48233029 TTGAATGTAC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.04
40 64 0.90
41 4 0.06
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (41 bp):
ATGATTGCACATACGTGCCCCTGTTTGTACCTTGGTACACC
Found at i:48235844 original size:57 final size:57
Alignment explanation
Indices: 48235706--48235844 Score: 188
Period size: 57 Copynumber: 2.4 Consensus size: 57
48235696 AGGAGAAGAA
* *
48235706 AAGCCTTTATGGTGAACCTATTAAAGGACAGCCTTTGTGGAAAAACTCTAGAAAGGT
1 AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
* * * * *
48235763 AAGCCTATATGGTGAACATGTTAAACGACAGCCTTTGCGGTAAAACTCTGGAAAGGT
1 AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
* * *
48235820 GAGCCTTTGTGGTGAACCTCTTAAA
1 AAGCCTTTATGGTGAACCTATTAAA
48235845 TGATGCTTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (57 bp):
AAGCCTTTATGGTGAACCTATTAAACGACAGCCTTTGCGGAAAAACTCTAGAAAGGT
Found at i:48235967 original size:28 final size:29
Alignment explanation
Indices: 48235906--48235968 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
48235896 AATGAAAAGG
*
48235906 ATGCCTTTGTGGCAATCTCTGGATAAATA
1 ATGCCTTTGAGGCAATCTCTGGATAAATA
**
48235935 A-GCCTTTGAGGCTCTCTCT-GA-AAATAA
1 ATGCCTTTGAGGCAATCTCTGGATAAAT-A
48235962 ATGCCTT
1 ATGCCTT
48235969 CGTGGCGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
26 4 0.14
27 4 0.14
28 20 0.69
29 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (29 bp):
ATGCCTTTGAGGCAATCTCTGGATAAATA
Found at i:48238111 original size:26 final size:27
Alignment explanation
Indices: 48238036--48238113 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
48238026 ACATGTAAGA
* * *
48238036 AAATGGAAGCCTTTATGGAAATCCATG
1 AAATGGAAGCCTTTGTGGCAATCTATG
*
48238063 AAATGGAAGCCTTTGTGGCAATCTATT
1 AAATGGAAGCCTTTGTGGCAATCTATG
48238090 AAATGGAAGCC-TTGTGGCAATCTA
1 AAATGGAAGCCTTTGTGGCAATCTA
48238114 AGGAAAGAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 13 0.28
27 34 0.72
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCAATCTATG
Found at i:48238133 original size:54 final size:54
Alignment explanation
Indices: 48238075--48238244 Score: 183
Period size: 54 Copynumber: 3.2 Consensus size: 54
48238065 ATGGAAGCCT
*
48238075 TTGTGGCAATCTATTAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
* * * *
48238129 TTGTGGCAAAT-GATGAAA-GAAATGCCTTCATGGCGCA-C-ACA--AAAGAACAAA-CC
1 TTGTGGC-AATCTATGAAATGGAA-GCCTT-GTGGC-AATCTA-AGGAAAGAA-AAATCC
*
48238182 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCGATCTAAGGAAAGAAAAATCC
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
48238236 TTGTGGCAA
1 TTGTGGCAA
48238245 ATGATGAAAG
Statistics
Matches: 94, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
51 1 0.01
52 9 0.10
53 33 0.35
54 41 0.44
55 9 0.10
56 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCC
Found at i:48238187 original size:53 final size:53
Alignment explanation
Indices: 48238117--48238297 Score: 194
Period size: 53 Copynumber: 3.4 Consensus size: 53
48238107 CAATCTAAGG
* *
48238117 AAAGAAAAATCCTTGTGGCAAATGATGAAAGAAATGCCTTCATGGCGCACACA
1 AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
*
48238170 AAAGAACAAA-CCTTGTGGC-AATCTATGAAATGGAA-GCCTT-GTGGCG-ATCTA-A
1 AAAGAA-AAATCCTTGTGGCAAAT-GATGAAA-GGAATGCCTTCGTGGCGCA-C-ACA
* *
48238222 GGAAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGTCTTCGTGGAGCACACA
1 --AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
* *
48238277 AAAGAACAACCCTTGTGGCAA
1 AAAGAAAAATCCTTGTGGCAA
48238298 CCATTTGAAG
Statistics
Matches: 107, Mismatches: 8, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
51 1 0.01
52 10 0.09
53 53 0.50
54 32 0.30
55 10 0.09
56 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAAGAAAAATCCTTGTGGCAAATGATGAAAGGAATGCCTTCGTGGCGCACACA
Found at i:48238201 original size:107 final size:107
Alignment explanation
Indices: 48238075--48238297 Score: 383
Period size: 107 Copynumber: 2.1 Consensus size: 107
48238065 ATGGAAGCCT
*
48238075 TTGTGGCAATCTATTAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
*
48238140 GATGAAAGAAATGCCTTCATGGCGCACACAAAAGAACAAACC
66 GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
*
48238182 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCGATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
1 TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
* * * *
48238247 GATGAAAGGAATGTCTTCGTGGAGCACACAAAAGAACAACCC
66 GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
48238289 TTGTGGCAA
1 TTGTGGCAA
48238298 CCATTTGAAG
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 109 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (107 bp):
TTGTGGCAATCTATGAAATGGAAGCCTTGTGGCAATCTAAGGAAAGAAAAATCCTTGTGGCAAAT
GATGAAAGAAATGCCTTCATGGAGCACACAAAAGAACAAACC
Found at i:48238409 original size:27 final size:27
Alignment explanation
Indices: 48238355--48238409 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
48238345 GTATTCTTGA
* * **
48238355 CGAACTCTGAAGGGATAGTATGTGTGG
1 CGAACACTAAAGGGATAGTATGCATGG
48238382 CGAACACTAAAGGGATAGTATGCATGG
1 CGAACACTAAAGGGATAGTATGCATGG
48238409 C
1 C
48238410 AAACTTTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.22
Consensus pattern (27 bp):
CGAACACTAAAGGGATAGTATGCATGG
Found at i:48240787 original size:22 final size:19
Alignment explanation
Indices: 48240769--48240879 Score: 84
Period size: 18 Copynumber: 5.6 Consensus size: 19
48240759 ACTAAAAATT
48240769 TATTTTAAAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
*
48240788 GTATTTTAAAAGTATTTTAAAAA
1 -TATTTTAAAA--A-TTAAAAAA
48240811 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
* ** *
48240829 TAATAAAAAAGTATTTTAAAAA
1 TATTTTAAAA--A-TTAAAAAA
48240851 TATTTT-AAAATTAAAAAA
1 TATTTTAAAAATTAAAAAA
*
48240869 T-TTTAAAAAAT
1 TATTTTAAAAAT
48240880 AAATATATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
17 3 0.04
18 23 0.32
19 5 0.07
20 10 0.14
21 7 0.10
22 17 0.24
23 7 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (19 bp):
TATTTTAAAAATTAAAAAA
Found at i:48240800 original size:11 final size:11
Alignment explanation
Indices: 48240784--48240820 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
48240774 TAAAAATTAA
48240784 AAAAGTATTTT
1 AAAAGTATTTT
48240795 AAAAGTATTTT
1 AAAAGTATTTT
*
48240806 AAAAATATTTT
1 AAAAGTATTTT
48240817 AAAA
1 AAAA
48240821 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:48240839 original size:40 final size:40
Alignment explanation
Indices: 48240769--48240878 Score: 166
Period size: 40 Copynumber: 2.7 Consensus size: 40
48240759 ACTAAAAATT
**
48240769 TATTTTAAAAATTAAAAAAGTATTTTAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAA-TATTAAAAAAGTATTTTAAAAA
*
48240811 TATTTTAAAATTAAAAAATAATAAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATATTAAAAAAGTATTTTAAAAA
*
48240851 TATTTTAAAATTAAAAAATTTTAAAAAA
1 TATTTTAAAATTAAAAAATATTAAAAAA
48240879 TAAATATATT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
40 45 0.71
41 12 0.19
42 6 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAATATTAAAAAAGTATTTTAAAAA
Found at i:48240877 original size:17 final size:17
Alignment explanation
Indices: 48240844--48240876 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
48240834 AAAAAGTATT
48240844 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
48240861 TTAAAAA-ATTTTAAAA
1 TTAAAAATATTTTAAAA
48240877 AATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:48240882 original size:17 final size:17
Alignment explanation
Indices: 48240845--48240889 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
48240835 AAAAGTATTT
*
48240845 TAAAAATATTTTAAAAT
1 TAAAAATATTTTAAAAA
48240862 TAAAAA-ATTTTAAAAAA
1 TAAAAATATTTT-AAAAA
*
48240879 TAAATATATTT
1 TAAAAATATTT
48240890 ATTATATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.21
17 15 0.62
18 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAATATTTTAAAAA
Found at i:48249597 original size:96 final size:97
Alignment explanation
Indices: 48249479--48249750 Score: 329
Period size: 96 Copynumber: 2.8 Consensus size: 97
48249469 GTCAATTAAG
* * * * *
48249479 TTAATTATAATTTTTTT-CAAAATTGGATT-GGGTTTCGTATTTATTGTTTTTTAAGAAAAAATC
1 TTAATTATAATTTTTTTAAAAAATTAGATTAGGGTTTAGTATTTA-GGGTTTTTAAGAAAAAATC
* * * *
48249542 AATTAAATTAAGGTTTAGGGTTACTTGAGTAAT
65 AAATAAATTAGGGTTTAGGATTACTTGAGTAAA
* *
48249575 TTAATTA-AATTTTTTTAAAAAATTAGATTAGGGTTTAG-AGTTAAGGGTTTTTAAGGAAAAATC
1 TTAATTATAATTTTTTTAAAAAATTAGATTAGGGTTTAGTA-TTTAGGGTTTTTAAGAAAAAATC
*
48249638 AAATAAATTAGGGTTCAGGATTACTTGAGTAAA
65 AAATAAATTAGGGTTTAGGATTACTTGAGTAAA
* * * * *
48249671 TTAATTATAA-ATTTTTATAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGTAAAAACTT
1 TTAATTATAATTTTTTTAAAAAATTAGATTAGGGTTTAGTATTTAGGGTTTTTAAG-AAAAAATC
48249735 AAATAAATTAGGGTTT
65 AAATAAATTAGGGTTT
48249751 GGAGTTTAAG
Statistics
Matches: 150, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
95 9 0.06
96 109 0.73
97 32 0.21
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.43
Consensus pattern (97 bp):
TTAATTATAATTTTTTTAAAAAATTAGATTAGGGTTTAGTATTTAGGGTTTTTAAGAAAAAATCA
AATAAATTAGGGTTTAGGATTACTTGAGTAAA
Found at i:48250014 original size:126 final size:126
Alignment explanation
Indices: 48249789--48250205 Score: 674
Period size: 126 Copynumber: 3.3 Consensus size: 126
48249779 TTGTTAATTT
48249789 AAAGAAGCTCCCACGTGGACG-GACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
1 AAAGAAGCTCCCACGTGGACGCG-CTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGA
*
48249853 CGTTTCTGAGCAAATAGTGTCAAAAACGTTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
65 CGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * *
48249915 AAAGAAGCTCTCACATGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAGTAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * *
48249980 GTTTTTGAGCAAGTAGTGTCAAAAACGCTTTAAGCAGGATGCTTTATCAGTAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * * * *
48250041 AAAGAAGCTCCCACGTGGATGCACTTTTGCTATAGTAGCTCTTGAAAAAATAATTTTGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
*
48250106 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCTGAAGTACTG
66 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
*
48250167 AAAGAAGCTCCCACGTGAACGCGCTTTTGCTACAGTAGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
48250206 ACATGTTTGG
Statistics
Matches: 264, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 263 1.00
127 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:48252623 original size:21 final size:21
Alignment explanation
Indices: 48252599--48252639 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
48252589 CCAGCTTTCG
* *
48252599 GCGGGGGTTGTGGTTGCTCCA
1 GCGGGGATTGTGGTTCCTCCA
*
48252620 GCGGGGATTTTGGTTCCTCC
1 GCGGGGATTGTGGTTCCTCC
48252640 GGTAAGGGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.22, G:0.41, T:0.32
Consensus pattern (21 bp):
GCGGGGATTGTGGTTCCTCCA
Found at i:48254796 original size:22 final size:21
Alignment explanation
Indices: 48254771--48254820 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
48254761 TCTTTTAAAT
* *
48254771 AGAAATTTGAGAGGAATTTGAG
1 AGAAATTAGAGA-GAAATTGAG
48254793 AGAATATTAGAGAGAAATTGAG
1 AGAA-ATTAGAGAGAAATTGAG
48254815 AGAAAT
1 AGAAAT
48254821 GATTTAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 2 0.08
22 16 0.64
23 7 0.28
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (21 bp):
AGAAATTAGAGAGAAATTGAG
Found at i:48254815 original size:10 final size:10
Alignment explanation
Indices: 48254771--48254820 Score: 55
Period size: 10 Copynumber: 4.6 Consensus size: 10
48254761 TCTTTTAAAT
48254771 AGAAATTTGAG
1 AGAAA-TTGAG
*
48254782 AGGAATTTGAG
1 A-GAAATTGAG
48254793 AGAATATTAGAG
1 AGAA-ATT-GAG
48254805 AGAAATTGAG
1 AGAAATTGAG
48254815 AGAAAT
1 AGAAAT
48254821 GATTTAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
10 12 0.35
11 12 0.35
12 10 0.29
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (10 bp):
AGAAATTGAG
Found at i:48259972 original size:35 final size:35
Alignment explanation
Indices: 48259911--48260220 Score: 248
Period size: 35 Copynumber: 8.8 Consensus size: 35
48259901 CTTCTTGATA
* ** *
48259911 TTAATTGAATGAAGTATCAATTTTGTGGCGGGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * **
48259946 TTAATTGAAAGAACTATCGGTGTTGTGGTGGTACA
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * *
48259981 TTAAATTAAAAGAAGTATCGGTGTTGTTGCAGGATG
1 TT-AATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * ** *
48260017 TTAAATGAATGAAGTATCAATGTTGTGGCGAGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * *
48260052 CTCATTGGAAGAAGTATCGGTGTTGTGGTGGGATG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * *
48260087 TTACA-TGAATGAAGTATCGATGTTGTAGCGGGATG
1 TTA-ATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
***
48260122 TTAATTGAAAGAAGTATCGGTGTTGTGGCGACCTG
1 TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
* * * **
48260157 TTAATTGAAAGAGAAGTTTTGGTGCTGTGGCTAGATG
1 TTAATTG-AA-AGAAGTATCGGTGTTGTGGCGGGATG
* * *
48260194 TTATTTGAAA-ATG-ATCGGCGTTGTGGC
1 TTAATTGAAAGAAGTATCGGTGTTGTGGC
48260221 AAGATTTTTG
Statistics
Matches: 211, Mismatches: 59, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
33 10 0.05
34 3 0.01
35 140 0.66
36 32 0.15
37 26 0.12
ACGTcount: A:0.28, C:0.08, G:0.31, T:0.34
Consensus pattern (35 bp):
TTAATTGAAAGAAGTATCGGTGTTGTGGCGGGATG
Found at i:48266038 original size:21 final size:21
Alignment explanation
Indices: 48266012--48266061 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
48266002 CATTGTTTCT
* *
48266012 AATCTCATTGCTACAGTATCC
1 AATCTCACTGCTACAGTAACC
*
48266033 AATCTCACTGCTACAGTAACT
1 AATCTCACTGCTACAGTAACC
48266054 AATCTCAC
1 AATCTCAC
48266062 CACCACCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.30, G:0.08, T:0.30
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:48267369 original size:27 final size:27
Alignment explanation
Indices: 48267339--48267398 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
48267329 TGCAAGTTGT
* * *
48267339 GTTCGCCAGTTGGTTTGGCGAGCTGGG
1 GTTCACCAATTGGTTTGGCGAACTGGG
*
48267366 GTTCACCAATTGGTTTGGTGAACTGGG
1 GTTCACCAATTGGTTTGGCGAACTGGG
48267393 GTTCAC
1 GTTCAC
48267399 TAGTCAAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.13, C:0.18, G:0.37, T:0.32
Consensus pattern (27 bp):
GTTCACCAATTGGTTTGGCGAACTGGG
Found at i:48269220 original size:18 final size:18
Alignment explanation
Indices: 48269197--48269233 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
48269187 ACTCATGTTT
* *
48269197 TATGTTGTTATGCGAACC
1 TATGTTGTCATGCAAACC
48269215 TATGTTGTCATGCAAACC
1 TATGTTGTCATGCAAACC
48269233 T
1 T
48269234 TAATAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (18 bp):
TATGTTGTCATGCAAACC
Found at i:48269703 original size:24 final size:24
Alignment explanation
Indices: 48269676--48269734 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
48269666 ATCAGTTGAA
*
48269676 CAATATGAAGCACCTCCTGAA-GAT
1 CAATATGAAGCACCACCT-AATGAT
* *
48269700 CAATATCAAACACCACCTAATGAT
1 CAATATGAAGCACCACCTAATGAT
48269724 CAATATGAAGC
1 CAATATGAAGC
48269735 TCTATCTGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 2 0.07
24 27 0.93
ACGTcount: A:0.42, C:0.25, G:0.12, T:0.20
Consensus pattern (24 bp):
CAATATGAAGCACCACCTAATGAT
Found at i:48274216 original size:8 final size:8
Alignment explanation
Indices: 48274193--48274233 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
48274183 AATAAATAAG
48274193 TATTATAT
1 TATTATAT
48274201 TAATTATAT
1 T-ATTATAT
*
48274210 TATTATAA
1 TATTATAT
48274218 TATTATAT
1 TATTATAT
48274226 TATTATAT
1 TATTATAT
48274234 ATATAACACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATTATAT
Found at i:48274318 original size:4 final size:4
Alignment explanation
Indices: 48274304--48274337 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
48274294 GCAGAGAAGG
48274304 AAGA AAGGA AAGA AAGA AAGA AAGA AA-A AAGA AA
1 AAGA AA-GA AAGA AAGA AAGA AAGA AAGA AAGA AA
48274338 AAGGGAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:48275540 original size:37 final size:36
Alignment explanation
Indices: 48275439--48275573 Score: 92
Period size: 39 Copynumber: 3.5 Consensus size: 36
48275429 CGACCTTGAG
48275439 TCGATGAGACACTGGGTGTCATACTGTTACTTCGGATAGAT
1 TCGATGAGACACTGGGTGTCA-AC--TTACTTCGGAT--AT
** ** *
48275480 TCGATGAGGTACTGGGTACCAACTTACTTCGGCT-T
1 TCGATGAGACACTGGGTGTCAACTTACTTCGGATAT
* *
48275515 TGCCGATGAGACACTGGGTGTCAACTATTGCTTCGAACTAT
1 T--CGATGAGACACTGGGTGTCAAC--TTACTTCGGA-TAT
* *
48275556 CCGATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
48275574 CCATTCTGGT
Statistics
Matches: 74, Mismatches: 14, Indels: 14
0.73 0.14 0.14
Matches are distributed among these distances:
35 2 0.03
37 18 0.24
38 10 0.14
39 23 0.31
40 3 0.04
41 18 0.24
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (36 bp):
TCGATGAGACACTGGGTGTCAACTTACTTCGGATAT
Found at i:48276281 original size:17 final size:17
Alignment explanation
Indices: 48276232--48276282 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
48276222 ATGTGGCATG
*
48276232 TACCTAAGTAATGTACA
1 TACCTAAGTAATGTATA
48276249 TACCTAAGTAATGTATA
1 TACCTAAGTAATGTATA
*
48276266 TACCTAAGTGATGTATA
1 TACCTAAGTAATGTATA
48276283 GGGATTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (17 bp):
TACCTAAGTAATGTATA
Found at i:48280701 original size:29 final size:28
Alignment explanation
Indices: 48280668--48280760 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 28
48280658 CTCACATTTA
*
48280668 GTGGATATATACCTGTAGACTCATACTTG
1 GTGGA-ATATACCTGCAGACTCATACTTG
* * *
48280697 GTGGACACATACCTACAGACTCATGCTTG
1 GTGGA-ATATACCTGCAGACTCATACTTG
* * *
48280726 GGGGAATGTCCCTGCAGACTCATACTTG
1 GTGGAATATACCTGCAGACTCATACTTG
*
48280754 GAGGAAT
1 GTGGAAT
48280761 GTCCCTATGG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 24 0.46
29 28 0.54
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (28 bp):
GTGGAATATACCTGCAGACTCATACTTG
Found at i:48280773 original size:28 final size:28
Alignment explanation
Indices: 48280684--48280767 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
48280674 ATATACCTGT
* ** *
48280684 AGACTCATACTTGGTGGACACATACCTAC
1 AGACTCATACTTGGAGGA-ATGTCCCTAC
* * *
48280713 AGACTCATGCTTGGGGGAATGTCCCTGC
1 AGACTCATACTTGGAGGAATGTCCCTAC
48280741 AGACTCATACTTGGAGGAATGTCCCTA
1 AGACTCATACTTGGAGGAATGTCCCTA
48280768 TGGACTGTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
28 30 0.65
29 16 0.35
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (28 bp):
AGACTCATACTTGGAGGAATGTCCCTAC
Found at i:48286464 original size:7 final size:7
Alignment explanation
Indices: 48286446--48286475 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
48286436 AAAATTACCC
48286446 AATTCA-
1 AATTCAT
48286452 AATTCAT
1 AATTCAT
48286459 AATTCAT
1 AATTCAT
48286466 AATTCAT
1 AATTCAT
48286473 AAT
1 AAT
48286476 AATTCTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (7 bp):
AATTCAT
Found at i:48286726 original size:24 final size:22
Alignment explanation
Indices: 48286699--48286750 Score: 52
Period size: 24 Copynumber: 2.2 Consensus size: 22
48286689 CCTTTCATCA
48286699 CATTTTCACCTATAAAATTCTTTT
1 CATTTTC-CC-ATAAAATTCTTTT
*
48286723 CATTAAATCCCATAAAATTCTTTT
1 CATT--TTCCCATAAAATTCTTTT
48286747 -ATTT
1 CATTT
48286751 GAAAAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
23 3 0.12
24 17 0.71
25 2 0.08
26 2 0.08
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (22 bp):
CATTTTCCCATAAAATTCTTTT
Found at i:48289532 original size:12 final size:14
Alignment explanation
Indices: 48289495--48289532 Score: 53
Period size: 12 Copynumber: 2.8 Consensus size: 14
48289485 TATATGTATG
48289495 TATAATAATATATAA
1 TATAATAATA-ATAA
48289510 TATAATAATAA-AA
1 TATAATAATAATAA
48289523 -ATAATAATAA
1 TATAATAATAA
48289533 CAAAATTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.43
13 2 0.09
14 1 0.04
15 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TATAATAATAATAA
Found at i:48289790 original size:19 final size:21
Alignment explanation
Indices: 48289752--48289790 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
48289742 CCTTTTTTAA
*
48289752 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
48289773 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
48289791 CAGTAAGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:48290002 original size:21 final size:21
Alignment explanation
Indices: 48289976--48290072 Score: 144
Period size: 21 Copynumber: 4.7 Consensus size: 21
48289966 AATCATATCT
*
48289976 TCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATATCATA
48289997 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
48290018 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
* * *
48290037 TATAAGGTTGCATATATCATG
1 TCTAAGATTGCATATATCATA
48290058 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
48290073 CACATATAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.25
21 51 0.75
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:48290011 original size:19 final size:19
Alignment explanation
Indices: 48289989--48290092 Score: 118
Period size: 19 Copynumber: 5.3 Consensus size: 19
48289979 AAGATTGTAT
48289989 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
48290008 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
* *
48290029 ATATCATATATAAGGTTGC
1 ATATCATATCTAAGATTGC
*
48290048 ATATATCATGTCTAAGATTGC
1 --ATATCATATCTAAGATTGC
* * *
48290069 ATATCACATATAAGATTGT
1 ATATCATATCTAAGATTGC
48290088 ATATC
1 ATATC
48290093 CTCGAAAATC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
19 37 0.51
21 35 0.49
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:48290033 original size:40 final size:40
Alignment explanation
Indices: 48289989--48290091 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
48289979 AAGATTGTAT
*
48289989 ATATCATATCTAAGATTGCATATATCATATCTAAGATTGC
1 ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
* *
48290029 ATATCATATATAAGGTTGCATATATCATGTCTAAGATTGC
1 ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
* *
48290069 ATATCACATATAAGATTGTATAT
1 ATATCATATATAAGATTGCATAT
48290092 CCTCGAAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (40 bp):
ATATCATATATAAGATTGCATATATCATATCTAAGATTGC
Found at i:48290496 original size:44 final size:44
Alignment explanation
Indices: 48290429--48290517 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
48290419 GAGACAGGAT
*
48290429 TTGTTTATTTAGTCTGCCTCACTGCAACGTC-AGGAGGATAAGAC
1 TTGTTTACTTAGTCTGCCTCACTGCAACGTCAAGGA-GATAAGAC
*
48290473 TTGTTTACTTAGTCTG-CTCCACTGCAACTTCAAGGAGATAAGAC
1 TTGTTTACTTAGTCTGCCT-CACTGCAACGTCAAGGAGATAAGAC
48290517 T
1 T
48290518 AAACGCGATC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 2 0.05
44 35 0.85
45 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (44 bp):
TTGTTTACTTAGTCTGCCTCACTGCAACGTCAAGGAGATAAGAC
Found at i:48290587 original size:44 final size:43
Alignment explanation
Indices: 48290535--48290861 Score: 159
Period size: 44 Copynumber: 7.5 Consensus size: 43
48290525 ATCTGCTCTT
*
48290535 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCTGCTCCAC
1 TGCAACTTCAGAGAGATAAGAT-CAAGGTTTTAATCTGCTCCAC
* * * * * * *
48290579 TGCAACTTCAGGGAGACAGGATTATCGGCTCTAATCTGCTCCAC
1 TGCAACTTCAGAGAGATAAGATCA-AGGTTTTAATCTGCTCCAC
* * * *
48290623 TGCAACTTCAGGGAGATAAGATTTGCCA--TCTTCAATCTAC-CTCAC
1 TGCAACTTCAGAGAGATAAGA--T-CAAGGT-TTTAATCTGCTC-CAC
* ** * * *
48290668 TGTAACTTCAG-GAGGATAAGA-CTTGCTTGCTGAGTCTGCTCCAC
1 TGCAACTTCAGAGA-GATAAGATCAAGGTT--TTAATCTGCTCCAC
* * * * *** **
48290712 TGCAACTTTAGGGAGATAAGA-CTA-GATGCGATCTGCT-CTT
1 TGCAACTTCAGAGAGATAAGATCAAGGTTTTAATCTGCTCCAC
*
48290752 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCAC
1 TGCAACTTCAGAGAGATAAGAT-CAAGGTTTTAATCTGCTCCAC
* * * * * *
48290796 TGTAACTTCA-AGGAGATAGGATTATCGGCTTTAATCTGCTCCAT
1 TGCAACTTCAGA-GAGATAAGATCA-AGGTTTTAATCTGCTCCAC
*
48290840 TGCAACTTCCGAGAGATAAGAT
1 TGCAACTTCAGAGAGATAAGAT
48290862 TTGCCATCAT
Statistics
Matches: 209, Mismatches: 54, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
40 20 0.10
41 7 0.03
42 3 0.01
43 13 0.06
44 134 0.64
45 31 0.15
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TGCAACTTCAGAGAGATAAGATCAAGGTTTTAATCTGCTCCAC
Found at i:48290729 original size:217 final size:217
Alignment explanation
Indices: 48290445--48290909 Score: 723
Period size: 217 Copynumber: 2.1 Consensus size: 217
48290435 ATTTAGTCTG
* * *
48290445 CCTCACTGCAACGTCAGGAGGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAAGGAG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
* *
48290510 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTGATCTGCT
66 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
* *
48290575 CCACTGCAACTTCAGGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGGGAGAT
131 CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
*
48290640 AAGATTTGCCATCTTCAATCTA
196 AAGATTTGCCATCATCAATCTA
* * * *
48290662 CCTCACTGTAACTTCAGGAGGATAAGACTTGCTTGCTGAGTCTGCTCCACTGCAACTTTAGGGAG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
* *
48290727 ATAAGACTAGATGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
66 ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
* * * * *
48290792 CCACTGTAACTTCAAGGAGATAGGATTATCGGCTTTAATCTGCTCCATTGCAACTTCCGAGAGAT
131 CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
*
48290857 AAGATTTGCCATCATCAATCTG
196 AAGATTTGCCATCATCAATCTA
* * *
48290879 CCCCACTACAACTTCAGGAGGATAAAACTTG
1 CCTCACTGCAACTTCAGGAGGATAAGACTTG
48290910 TTGGCTTAAA
Statistics
Matches: 224, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
217 224 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (217 bp):
CCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTGAGTCTGCTCCACTGCAACTTCAAGGAG
ATAAGACTAAACGCGATCTGCTCTTTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCT
CCACTGCAACTTCAAGGAGACAGGATTATCGGCTCTAATCTGCTCCACTGCAACTTCAGAGAGAT
AAGATTTGCCATCATCAATCTA
Found at i:48291076 original size:132 final size:132
Alignment explanation
Indices: 48290906--48291414 Score: 883
Period size: 132 Copynumber: 3.9 Consensus size: 132
48290896 GAGGATAAAA
* * * * *
48290906 CTTGTTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
*
48290971 CTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
48291036 GG
131 GG
*
48291038 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
*
48291103 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
48291168 GG
131 GG
48291170 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * *
48291235 CACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
48291300 GG
131 GG
* * * *
48291302 CTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTT
1 CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
48291367 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48291415 ACTACTGCTT
Statistics
Matches: 357, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 357 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
GG
Found at i:48291434 original size:47 final size:47
Alignment explanation
Indices: 48291368--48291457 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
48291358 GATCTGCTTC
*
48291368 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCT
*
48291415 ACTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTC
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTC
48291458 TGCTGCAGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:48291455 original size:179 final size:178
Alignment explanation
Indices: 48291236--48291598 Score: 611
Period size: 179 Copynumber: 2.0 Consensus size: 178
48291226 GATCTGCTCC
* * * * *
48291236 ACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAG
48291301 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
*
48291366 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 CCACTACTGCTTAGGGAGATAAGATCTACAATCTTC-ACCTACTCCGCT
*
48291415 ACTACTGCTTAGGAAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGGAGACAA
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTT-AACCTACTCCGCTGCAGCTCAAGGAGACAA
**
48291479 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGC
48291544 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCACCTACTCCGCT
130 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCACCTACTCCGCT
*
48291593 GCTACT
1 ACTACT
48291599 CAGGGAGACA
Statistics
Matches: 173, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
178 20 0.12
179 153 0.88
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (178 bp):
ACTACTGCTTAGGAAGATAAGATCTACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACTACTGCTTAGGGAGATAAGATCTACAATCTTCACCTACTCCGCT
Found at i:48291477 original size:311 final size:310
Alignment explanation
Indices: 48291104--48291724 Score: 1073
Period size: 311 Copynumber: 2.0 Consensus size: 310
48291094 GATCTGCTCC
* *
48291104 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAAG
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
*
48291169 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
* *
48291234 CCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACA
131 CCACTAATGCTTAGGGAGATAAGATCTACAATC-TTAACCTACTCCGCTGCTACTCAGGGAGACA
* * *
48291299 AGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
195 AGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
48291364 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
260 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* *
48291415 ACTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGC-AGCTCAAGGAGACAA
1 ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTA-CTCAAGGAGACAA
* *
48291479 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
* *
48291544 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCACCTACTCCGCTGCTACTCAGGGAGACA
130 TCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAACCTACTCCGCTGCTACTCAGGGAGACA
*
48291609 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
195 AGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
*
48291674 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCT
260 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48291725 GCCTTTCAGG
Statistics
Matches: 293, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
310 140 0.48
311 153 0.52
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (310 bp):
ACTACTGCTTAGGAAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
CCACTAATGCTTAGGGAGATAAGATCTACAATCTTAACCTACTCCGCTGCTACTCAGGGAGACAA
GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGC
TTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:48291566 original size:44 final size:43
Alignment explanation
Indices: 48291517--48291964 Score: 146
Period size: 44 Copynumber: 10.2 Consensus size: 43
48291507 TATCTTGGAA
* *
48291517 AGATAAGATTTGCGGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACT-CTTAGGG
* * * * * * * * *
48291561 AGATAAGATCTACAATC-TTCACCTACTCCGCTGCTACTCAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACT-CTTAGGG
* ** * **
48291604 AGACAAGGCTTG-G-TGGCTTAAATCTGCTTCCCACTA-TCTTAGAA
1 AGATAAGATTTGCGAT--CTTTAATCTGC-T-CCACTACTCTTAGGG
** *
48291648 AGATAAGATTTGAC-ATCTTCGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTG-CGATCTTTAATCTGCTCCACTACT-CTTAGGG
* * * * * * * *
48291692 AGATAAGATCTACAATCTTCAACCTTCTCCGCTGC-CTTTCAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTC-TT-AGGG
* * * * * * * **
48291736 AGACAAGGCTTGGCG-GCTTAAATCTACTTCCCACTA-TCTTTGAA
1 AGATAA-GATTTGCGATCTTTAATCTGC-T-CCACTACTCTTAGGG
* * *
48291780 AGATAAGATTTGCCATCTCTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTACT-CTTAGGG
* * * * * *
48291824 AGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGG
1 AGATAAGATTTGCGATCTTTAATCTGCTCCACTAC-TCTTAGGG
* * * * * * *
48291868 AGACAAGGCTTAGTG-GCTTCAATCTGCTTCCCACTA-TCTT-GGA
1 AGATAA-GATTTGCGATCTTTAATCTGC-T-CCACTACTCTTAGGG
48291911 ATGATAAGATTTGCCG-TCTTTAATCTGCTCCACTACTGCTTAGGG
1 A-GATAAGATTTG-CGATCTTTAATCTGCTCCACTACT-CTTAGGG
48291956 AGATAAGAT
1 AGATAAGAT
48291965 CTACAATCTT
Statistics
Matches: 279, Mismatches: 96, Indels: 58
0.64 0.22 0.13
Matches are distributed among these distances:
41 1 0.00
42 18 0.06
43 48 0.17
44 180 0.65
45 16 0.06
46 16 0.06
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (43 bp):
AGATAAGATTTGCGATCTTTAATCTGCTCCACTACTCTTAGGG
Found at i:48291570 original size:132 final size:132
Alignment explanation
Indices: 48291415--48292780 Score: 2025
Period size: 132 Copynumber: 10.4 Consensus size: 132
48291405 CTACTCCGCT
* * * *** *
48291415 ACTACTGCTTAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* *
48291480 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48291545 CC
131 CC
**
48291547 ACTACTGCTTAGGGAGATAAGATCTACAATCTTC-ACCTACTCCGCTGCTACTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * *
48291611 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48291676 TC
131 CC
* *
48291678 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCCTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * * *
48291743 GCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48291808 CC
131 CC
* * * * *
48291810 ACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * *
48291875 GCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48291940 CC
131 CC
*
48291942 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * *
48292007 GCTTGGTGGCTTAAATTTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGTT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48292072 CT
131 CC
* * * *
48292074 ACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGTTGCTTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * * *
48292139 GCTTGGCGACTTAAATCTACTTCCCACTATCTCGGAAAGATAAGATTTACCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48292204 CT
131 CC
* * * *
48292206 ACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTTAGGGAGTCAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* *
48292271 GCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48292336 CC
131 CC
* * * * *
48292338 ACTACTGCTTAGGGAGATAAGATTTACAATC-TCTAACCTACTGCACTTCTTTTTAGGGAGACAA
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTC-AACCTACTCCGCTGCTTTTCAGGGAGACAA
* *
48292402 GGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
48292467 TCC
130 TCC
* * **
48292470 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* * * *
48292535 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48292600 CT
131 CC
* ** *
48292602 ACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
* *
48292667 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48292732 TC
131 CC
48292734 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48292781 ACTACTGCTT
Statistics
Matches: 1116, Mismatches: 115, Indels: 6
0.90 0.09 0.00
Matches are distributed among these distances:
131 122 0.11
132 992 0.89
133 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTTTTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
CC
Found at i:48291658 original size:574 final size:575
Alignment explanation
Indices: 48290906--48291988 Score: 1805
Period size: 574 Copynumber: 1.9 Consensus size: 575
48290896 GAGGATAAAA
* *
48290906 CTTGTTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
1 CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
* *
48290971 CTCTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
* * *
48291036 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTTGATCTGC
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGACATCTTCGATCTGC
48291101 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTACTCAGGGAGA
196 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCCT-CTCAGGGAGA
* * * *
48291165 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATC-TTGAAAAGATAAGATTTGCCGTCTTTGAT
260 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTG-AAAGATAAGATTTGCCATCTCTGAT
* ** *
48291229 CTGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGTTGCTGCTCAGGG
324 CTGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGGG
* *
48291294 AGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTG
389 AGACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTA
*
48291359 ATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCT
454 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCT
48291424 TAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
519 TAGGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
* * * *
48291481 CTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGCTC
1 CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
48291546 CACTACTGCTTAGGGAGATAAGATCTACAATCTTC-ACCTACTCCGCTGCTACTCAGGGAGACAA
66 CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
48291610 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT-AGAAAGATAAGATTTGACATCTTCGATCTG
131 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGA-AAAGATAAGATTTGACATCTTCGATCTG
* * *
48291674 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCCTTTCAGGGAGA
195 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCCTCTCAGGGAGA
48291739 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATC
260 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATC
* * ** *
48291804 TGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTAAACCTACTCCACTACTTTTTAGGGA
325 TGCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGGGA
* * * *
48291869 GACAAGGCTTAGTGGCTTCAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAA
390 GACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAA
48291934 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
455 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48291989 GCTGTTCAGG
Statistics
Matches: 471, Mismatches: 34, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
573 1 0.00
574 372 0.79
575 98 0.21
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (575 bp):
CTTGGTGGCTTAAATATACTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTACTC
CACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTACTCAGGGAGACAA
GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGACATCTTCGATCTGC
TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCCTCTCAGGGAGAC
AAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTTGAAAGATAAGATTTGCCATCTCTGATCT
GCTCCACTAATGCTTAGGGAGATAAGATCTACAATCTTAAACCTACTCCACTACTGCTCAGGGAG
ACAAGGCTTAGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTA
GGAAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAGG
Found at i:48292357 original size:44 final size:44
Alignment explanation
Indices: 48292176--48294697 Score: 289
Period size: 44 Copynumber: 57.2 Consensus size: 44
48292166 TATCTCGGAA
* * *
48292176 AGATAAGATTTACCGTCTTTGATCTGCTCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* **** * * * * * **
48292220 AGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
** * * * * *
48292264 AG-TCAAGGCTTGGCGGCTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGAT-AAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
*
48292308 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** * * * * * **
48292352 AGATAAGATTTACAATCTCTAACCTACTGCACTTCTTTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * **
48292396 AGACAAGGCTTAG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GAAA
1 AGATAA-GATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAG-GG
*
48292440 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * *
48292484 AGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
48292528 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAG-GG
* * ** * *
48292572 AGATAAGATTTACCCTCTTTGCTCTGCTCTACTACTGCTTAAGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * * * *
48292616 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
48292660 AGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
48292704 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
48292748 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * * ** * * * * *
48292795 AGATAAAATCTACAAT-TTTCAACCTACTCCGCTACTGCTCATGG
1 AGATAAGATTTGCCGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* * ** ** * * * **
48292839 TGACAAGGCTTGGTGGCTTAAATCTGTTTCCCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTG-CT-CCACTACTGCTTAG-GG
** *
48292883 AGATAAGATTTTTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *** * * *
48292927 AGATAAGATCTACAGTCTTCAACCTACTCTGTTGCTGCTCAAGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * *
48292971 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
48293015 AGATAAGATTTGCGGTCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
48293059 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCA-GG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
48293102 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCAATA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
48293146 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * ** * * *
48293190 AGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
48293234 AGACAAGGCTTGGTGGCTTAAATCTGCTTCTCACTA-T-CTT-GAAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-TC-CACTACTGCTTAG-GG
* * *
48293278 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTAATGCTTATGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * ** * * ** * *
48293322 AGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
48293366 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGGG
* * ** *
48293410 AGATAAGATTTGACATCTTCGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * *
48293454 AGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** ** * * *
48293498 ATACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
48293542 AGATAAGATTTGCCATCTTTGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
48293586 AGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCT-C-C-ACTACTGCTTAGGG
* * ** * * ** * * * *
48293633 AGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGG
1 AGATAAGATTTGCCGTCTTT-AATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
48293677 AGACAAGGCTTGGTGGCTTAAATCTACTTCTCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-TC-CACTACTGCTTAGG-G
*
48293721 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * * * *
48293765 AGATAAAATCTACAATCTTCAACCTACTCCCCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** ** * * **
48293809 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGGG
* * ** *
48293853 AGATAAGATTTGACATCTTCGATCTGCTTCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * *
48293897 AGATAAGATCTACAATCTTTAACCTTCTCCGCTGC--CTTTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGC-TT-AGGG
* ** * * * * * * *
48293941 AGACAAGGCTTGGCGGCTTAAATCTACTTCCCGCTATCT-TTTA--A
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTA-CTGCTTAGGG
* *
48293985 AGATAAGATTTGCCGTCTCTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** * * **
48294029 AGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
48294073 AGACAAGGCTTAG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGA
1 AGATAA-GATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGGG
*
48294116 ATGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGAG
1 A-GATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * * *
48294161 AGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
** ** ** * *
48294205 AGACCAGGCTTGGTGGC-TTATATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTTA-ATCTGC-T-CCACTACTGCTTAGG-G
* * *
48294249 AGATAAGATTTGCCGTCTTTGATCTGCTTCACTACTGTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * * * *
48294293 ACATAAGATCTACAATCTTCAACCTTCTCCATTGCT-TTTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT-AGGG
* ** * * * * * *
48294337 AGACAAGGCTTGGCGACTTAAATCTACTTCCCACTA-T-C-TCGGAA
1 AGATAAGATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* * *
48294381 AGATAAGATTTACCGTCTTTGATCTGCTACACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* **** * * * * * *
48294425 AGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCT-TTTCAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTT-AGGG
* ** * * * *
48294469 AG-TCAAGGCTAGGCAG-CTTAAATCTACTTCCCACTA-T-CTT-GGAA
1 AGAT-AA-GATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
* *
48294513 AGATAAGATTTGTCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* ** * * * * **
48294557 AGATAAGATTTACAATCTTTAACCTACTGCACTTCTTTTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
* * * * * * *
48294601 AGACAAGGCTTAG-TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTTAATCTGC-T-CCACTACTGCTTAGG-G
*
48294645 AGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
48294689 AGATAAGAT
1 AGATAAGAT
48294698 CTACAATCTT
Statistics
Matches: 1632, Mismatches: 712, Indels: 268
0.62 0.27 0.10
Matches are distributed among these distances:
41 2 0.00
42 101 0.06
43 104 0.06
44 1189 0.73
45 85 0.05
46 73 0.04
47 78 0.05
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTTAATCTGCTCCACTACTGCTTAGGG
Found at i:48292799 original size:47 final size:47
Alignment explanation
Indices: 48292734--48292830 Score: 176
Period size: 47 Copynumber: 2.1 Consensus size: 47
48292724 GATCTGCTTC
*
48292734 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
*
48292781 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
48292828 ACT
1 ACT
48292831 GCTCATGGTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
Found at i:48292853 original size:179 final size:179
Alignment explanation
Indices: 48292600--48292955 Score: 570
Period size: 179 Copynumber: 2.0 Consensus size: 179
48292590 TTGCTCTGCT
* *
48292600 CTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGACA
1 CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCAGAGAGACA
*
48292665 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
66 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTG
*
48292730 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
131 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
* * * *
48292779 CTACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATG-GTGAC
1 CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCA-GAGAGAC
* * ** *
48292843 AAGGCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCT
65 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCT
*
48292908 GCTCCACTACTGCTTAGGGAGATAAGATCTACAGTCTTCAACCTACTC
130 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC
48292956 TGTTGCTGCT
Statistics
Matches: 162, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
179 161 0.99
180 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (179 bp):
CTACTACTGCTTAAGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTCCTCAGAGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCG
Found at i:48292872 original size:311 final size:311
Alignment explanation
Indices: 48292470--48293091 Score: 1021
Period size: 311 Copynumber: 2.0 Consensus size: 311
48292460 GATCTGCTCC
* * * *
48292470 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
*
48292535 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGATCTGCT
*
48292600 CTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTC-AGAGAGAC
131 CCACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAAG-GAGAC
48292664 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
195 AAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCT
* *
48292729 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
260 GCTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * *
48292781 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
* ** *
48292846 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGATCTGCT
* * * * *
48292911 CCACTACTGCTTAGGGAGATAAGATCTACAGTCTTCAACCTACTCTGTTGCTGCTCAAGGAGACA
131 CCACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAAGGAGACA
* **
48292976 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTG
196 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
48293041 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
261 CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48293092 GCTGCTCAGG
Statistics
Matches: 287, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
311 285 0.99
312 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (311 bp):
ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGATCTGCT
CCACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAAGGAGACA
AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
CTCCACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:48292965 original size:132 final size:132
Alignment explanation
Indices: 48292781--48293618 Score: 1302
Period size: 132 Copynumber: 6.4 Consensus size: 132
48292771 CTACTCCGCT
* * * * *
48292781 ACTACTGCTTAGGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* **
48292846 GCTTGGTGGCTTAAATCTGTTTCCCACTATCTTGAAAAGATAAGATTTTTCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
48292911 CC
131 CC
* * * *
48292913 ACTACTGCTTAGGGAGATAAGATCTACAGTCTTCAACCTACTCTGTTGCTGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
48292978 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCGGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
48293043 CC
131 CC
*
48293045 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCA-GGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
48293109 GCTTGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
48293174 CC
131 CC
* * * *
48293176 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
48293241 GCTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
48293306 CC
131 CC
* * * * * *
48293308 ACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
48293373 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTT-AGAAAGATAAGATTTGACATCTTCGATCTGC
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGA-AAAGATAAGATTTGCCGTCTTTGATCTGC
*
48293437 TTC
130 TCC
* * * *
48293440 ACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
48293505 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48293570 TC
131 CC
48293572 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48293619 ACTACTGCTT
Statistics
Matches: 654, Mismatches: 49, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
131 128 0.20
132 526 0.80
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
CC
Found at i:48293637 original size:47 final size:47
Alignment explanation
Indices: 48293572--48293661 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
48293562 GATCTGCTTC
48293572 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
*
48293619 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTC
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTC
48293662 TGCTGCAGCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (47 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:48293685 original size:179 final size:179
Alignment explanation
Indices: 48293440--48293794 Score: 595
Period size: 179 Copynumber: 2.0 Consensus size: 179
48293430 GATCTGCTTC
* * * *
48293440 ACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATACAAG
1 ACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAG
*
48293505 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
* *
48293570 TCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 CCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
* *
48293619 ACTACTGCTTAGGGAGATAAGATCTACAAT-TTTCAACCTACTCTGCTGCAGCTCAAGGAGACAA
1 ACTACTGCTTAGGGAGATAAGATATACAATCTTT-AACCTACTCCGCTGCAGCTCAAGGAGACAA
* *
48293683 GGCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGC
48293748 TCCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCC
130 TCCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCC
48293795 CCTGCTGCTC
Statistics
Matches: 164, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
178 3 0.02
179 161 0.98
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (179 bp):
ACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCAGCTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCGCT
Found at i:48293814 original size:575 final size:574
Alignment explanation
Indices: 48292470--48294193 Score: 1854
Period size: 575 Copynumber: 3.0 Consensus size: 574
48292460 GATCTGCTCC
* * * *
48292470 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTGCTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCA-GGAGACAAG
* * * * * *
48292535 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTACCCTCTTTGCTCTGCT
65 GCTTGGTGGCTTAAATCTACTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
* * * * * * *
48292600 CTACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTCCTCAGAGAGACA
130 CCACTACTACTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTACTCAGGGAGACA
* * * *
48292665 AGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTG
195 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
* * * * * *
48292730 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTACTGCTTAGGG
260 CTCCACTAATGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGC--CT-CTCAGGG
* ** * *** * * * * ** * ** ****
48292795 AGATAA-AATCT-ACAATTTTCAACCTAC-TCCGCTACT-GCTCATG-GTGACAAGGCTTGGTGG
322 AGACAAGGCT-TGGC-GGCTTAAATCTACTTCC-C-ACTATCTTA-GAAAGATAAGATTTGACAT
* * ** * * * * * *
48292855 CT-TAAATCTGTTTCCCACTA-T-CTT-GAAAAGATAAGATTTTTC-GTCTTTGATCTGCTCCAC
382 CTCT-GATCTG-CT-CCACTACTGCTTAG-GGAGATAAGA-TATACAATCTTTAACCTACTCCAC
* * * * * * * **** * ** *
48292915 TACTGCTTAGGGAGATAAGATCTACAGT--CTTCAACCTACTCTGTTGCTGCTCAAGG--AGACA
442 TACTGCTCAGGGAGACAAG-GCT-TAGTGGCTTAAATCTGCT-TCCCACT-ATCTTGGAAAGATA
** **** * * * * * ** ** *
48292976 AGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTTGGAAAGATAAGATTTGCGGTCTTTGATC
503 AGATTTGCCATCTTTAATCTGC-T-CCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACC
*
48293039 TGCT-C-C-
566 TACTCCGCT
*
48293045 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGAGACAAGG
1 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCAGGAGACAAGG
*
48293110 CTTGGTGGCTTAAATCTGCTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
66 CTTGGTGGCTTAAATCTACTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
* * * *
48293175 CACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAA
131 CACTACTACTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTACTCAGGGAGACAA
* * * *
48293240 GGCTTGGTGGCTTAAATCTGCTTCTCACTATCTT-GAAAAGATAAGATTTGCCGTCTTTGATCTG
196 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAG-AAAGATAAGATTTGACATCTTCGATCTG
* * *
48293304 CTCCACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTG-CTGCTCAGGGAG
260 CTCCACTAATGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCCT-CTCAGGGAG
* *
48293368 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCT-TCGA
324 ACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTCT-GA
* ** *
48293432 TCTGCTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGG
388 TCTGCTCCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCACTACTGCTCAGG
* *
48293497 GATACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTT
453 GAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTT
* * *
48293562 GATCTGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
518 AATCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCT
* * *
48293619 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAG
1 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTC-AGGAGACAAG
* *
48293684 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
65 GCTTGGTGGCTTAAATCTACTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
* *
48293749 CCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGACA
130 CCACTACTACTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTACTCAGGGAGACA
48293814 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
195 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
* * * * *
48293879 CTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTTCTCCGCTGCCTTTCAGGGAGA
260 CTCCACTAATGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCCTCTCAGGGAGA
* ** * *
48293944 CAAGGCTTGGCGGCTTAAATCTACTTCCCGCTATCTTTTAAAGATAAGATTTGCCGTCTCTGATC
325 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTCTGATC
* ** *
48294009 TGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGGGA
390 TGCTCCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCACTACTGCTCAGGGA
* *
48294074 GACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAA
455 GACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAA
48294139 TCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCT
520 TCTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48294194 GCTGCTCAGG
Statistics
Matches: 978, Mismatches: 148, Indels: 46
0.83 0.13 0.04
Matches are distributed among these distances:
569 16 0.02
570 16 0.02
571 131 0.13
572 6 0.01
573 2 0.00
574 281 0.29
575 522 0.53
576 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (574 bp):
ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCAGCTCAGGAGACAAGG
CTTGGTGGCTTAAATCTACTTCCCAATATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCTC
CACTACTACTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTACTCAGGGAGACAA
GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGC
TCCACTAATGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCCTCTCAGGGAGAC
AAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTAGAAAGATAAGATTTGACATCTCTGATCT
GCTCCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCACTACTGCTCAGGGAG
ACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTAAT
CTGCTCCACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCT
Found at i:48293826 original size:132 final size:132
Alignment explanation
Indices: 48293619--48294985 Score: 1980
Period size: 132 Copynumber: 10.4 Consensus size: 132
48293609 CTACTCCGCT
* * * *
48293619 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTGCAGCTCAAGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* *
48293684 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48293749 CC
131 CC
* *
48293751 ACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * *
48293816 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48293881 TC
131 CC
* * *
48293883 ACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTTCTCCGCTGCCT-TTCAGGGAGACAA
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTG-CTGCTCAGGGAGACAA
* * * ** *
48293947 GGCTTGGCGGCTTAAATCTACTTCCCGCTATCTTTTAAAGATAAGATTTGCCGTCTCTGATCTGC
65 GGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
48294012 TCC
130 TCC
* * * * ** *
48294015 ACTACTGCTTAGGGAGATAAGATTTACAATCTTTAACCTACTCCACTACTTTTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
48294080 GCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAATGATAAGATTTGCCGTCTTTAATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48294145 CC
131 CC
* *
48294147 ACTACTGCTTAGAGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACCAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
48294212 GCTTGGTGGCTTATATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48294277 TC
131 CC
* * * ** **
48294279 ACTACTGTTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCATTGCTTTTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * * *
48294344 GCTTGGCGACTTAAATCTACTTCCCACTATCTCGGAAAGATAAGATTTACCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48294409 AC
131 CC
* * ** *
48294411 ACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAACCTTCTCCGCTGCTTTTCAGGGAGTCAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* ** * *
48294476 GCTAGGCAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48294541 CC
131 CC
* * * * * ** *
48294543 ACTACTGCTTAGGGAGATAAGATTTACAATCTTTAACCTACTGCACTTCTTTTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
*
48294608 GCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48294673 CC
131 CC
*
48294675 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGTTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * * * *
48294740 GCTTGGTGGCTTAAATCTGCTTCCCACAATTTTGAAAAGATAAGATTTACCGTCTTTGCTCTGCT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
48294805 CC
131 CC
* *
48294807 ACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
* * *
48294872 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTT
66 GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
*
48294937 TC
131 CC
* *
48294939 ACAACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCT
1 ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
48294986 ACTACTGCTT
Statistics
Matches: 1102, Mismatches: 131, Indels: 4
0.89 0.11 0.00
Matches are distributed among these distances:
131 2 0.00
132 1098 1.00
133 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAG
GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGCT
CC
Found at i:48294010 original size:443 final size:443
Alignment explanation
Indices: 48293176--48294064 Score: 1467
Period size: 443 Copynumber: 2.0 Consensus size: 443
48293166 GATCTGCTCC
* *
48293176 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTTACTCATGGAGACAAG
1 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCACTCAAGGAGACAAG
*
48293241 GCTTGGTGGCTTAAATCTGCTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
66 GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
* * * * **
48293306 CCACTAATGCTTATGGAGATTAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGAGACA
131 CCACTAATGCTTAGGGAGATAAAATATACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGACA
48293371 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
196 AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
* *
48293436 CTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGTTGCTGCTCAGGGATA
261 CTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCTGCTCAGGGAGA
* * *
48293501 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATC
326 CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGATC
* *
48293566 TGCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCT
391 TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACT
* * *
48293619 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCTGCTG-CAGCTCAAGGAGACAA
1 ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCA-CTCAAGGAGACAA
*
48293683 GGCTTGGTGGCTTAAATCTACTTCTCACTATCTTGGAAAGATAAGATTTGCCGTCTTTGATCTGC
65 GGCTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGC
* *
48293748 TCCACTACTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGAC
130 TCCACTAATGCTTAGGGAGATAAAATATACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGAC
48293813 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCT
195 AAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCT
* * *
48293878 GCTTCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTTCTCCGCTGCCT-TTCAGGGA
260 GCTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTG-CTGCTCAGGGA
* ** *
48293942 GACAAGGCTTGGCGGCTTAAATCTACTTCCCGCTATCTTTTAAAGATAAGATTTGCCGTCTCTGA
324 GACAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGA
* *
48294007 TCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTTAACCTACTCCACT
389 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACT
48294062 ACT
1 ACT
48294065 TTTTAGGGAG
Statistics
Matches: 413, Mismatches: 31, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
442 1 0.00
443 410 0.99
444 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (443 bp):
ACTACTACTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGTCACTCAAGGAGACAAG
GCTTGGTGGCTTAAATCTACTTCTCACTATCTTGAAAAGATAAGATTTGCCGTCTTTGATCTGCT
CCACTAATGCTTAGGGAGATAAAATATACAATCTTCAACCTACTCCCCTGCTGCTCAGGGAGACA
AGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTTGACATCTTCGATCTG
CTTCACTACTGCTTAGGGAGATAAGATATACAATCTTTAACCTACTCCGCTGCTGCTCAGGGAGA
CAAGGCTTGGCGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTCTGATC
TGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACT
Found at i:48295005 original size:47 final size:47
Alignment explanation
Indices: 48294942--48295035 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
48294932 CTGTTTCACA
*
48294942 ACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCTACT
1 ACTGCTTAGGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
*
48294989 ACTGCTTACGG-AGATAAAATCTACAATTTTCAACCTACTCCGCTACT
1 ACTGCTTA-GGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
48295036 GCTCATGGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 42 0.95
48 2 0.05
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (47 bp):
ACTGCTTAGGTAGATAAAATCTACAATCTTCAACCTACTCCGCTACT
Found at i:48295040 original size:179 final size:178
Alignment explanation
Indices: 48294807--48295159 Score: 526
Period size: 179 Copynumber: 2.0 Consensus size: 178
48294797 GCTCTGCTCC
* * * *
48294807 ACTACTGCTTAGGGAGATAAGATCGACAATCTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAG
1 ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
* *
48294872 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGTT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
* *
48294937 TCACAACTGCTTAGGTAGATAAGATCTACAATCTTCAACCTACTCCGCT
131 CCACAACTGCTTAGGGAGATAAGATCT-CAATCTTCAACCTACTCCGCT
* * * *
48294986 ACTACTGCTTACGGAGATAAAATCTACAATTTTCAACCTACTCCGCTACTGCTCATGGTGACAAG
1 ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
* * * * *
48295051 GCTTGGTGGCTTAAATCTGTTTCCGACTATCTTGAAAAGATAAGATTTTCCGTCTTTGATCTGCT
66 ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
* *
48295116 CCACTACTTCTTAGGGAGATAAGATCTCAATCTTCAACCTACTC
131 CCACAACTGCTTAGGGAGATAAGATCTCAATCTTCAACCTACTC
48295160 TGTGNNNNNN
Statistics
Matches: 155, Mismatches: 19, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
178 17 0.11
179 138 0.89
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (178 bp):
ACTACTGCTTACGGAGATAAAATCGACAATCTTCAACCTACTCCGCTACTGCTCAGGGAGACAAG
ACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGCCATCTTTGATCTGCT
CCACAACTGCTTAGGGAGATAAGATCTCAATCTTCAACCTACTCCGCT
Found at i:48305620 original size:20 final size:19
Alignment explanation
Indices: 48305590--48305778 Score: 109
Period size: 19 Copynumber: 9.7 Consensus size: 19
48305580 TTTTGGTACA
48305590 ATAACTTTTATAATTTTTTT
1 ATAA-TTTTATAATTTTTTT
48305610 ATGAATTTTAT-ATTTTTTT
1 AT-AATTTTATAATTTTTTT
* * *
48305629 ACATTTTTTATAATTTTCTT
1 ATA-ATTTTATAATTTTTTT
* * **
48305649 ATGACTTTATAA-AATTTT
1 ATAATTTTATAATTTTTTT
* * * *
48305667 ATAATTTATTTCTATATTTCT
1 ATAATTT-TAT-AATTTTTTT
48305688 ATATATTTTATAATTTTTTT
1 ATA-ATTTTATAATTTTTTT
* *
48305708 ATAATTTTTATAAAATTTTTC
1 ATAA-TTTTAT-AATTTTTTT
* *
48305729 A-AGTTTTAATAATTGTTTT
1 ATAATTTT-ATAATTTTTTT
*
48305748 ACAATTTTAT-ATTTATTTT
1 ATAATTTTATAATTT-TTTT
48305767 ATAATTTT-TAAT
1 ATAATTTTATAAT
48305779 AAATTTTATA
Statistics
Matches: 127, Mismatches: 29, Indels: 27
0.69 0.16 0.15
Matches are distributed among these distances:
18 13 0.10
19 51 0.40
20 40 0.31
21 19 0.15
22 4 0.03
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
ATAATTTTATAATTTTTTT
Found at i:48305668 original size:29 final size:27
Alignment explanation
Indices: 48305634--48305726 Score: 87
Period size: 30 Copynumber: 3.1 Consensus size: 27
48305624 TTTTTACATT
*
48305634 TTTTATAATTTTCTTATGACTTTATAAAA
1 TTTTATAATTTTTTTAT-A-TTTATAAAA
* *
48305663 TTTTATAATTTATTTCTATATTTCTATATA
1 TTTTATAATTT-TTT-TATATTTATA-AAA
48305693 TTTTATAATTTTTTTATAATTTTTATAAAA
1 TTTTATAATTTTTTTAT-A--TTTATAAAA
48305723 TTTT
1 TTTT
48305727 TCAAGTTTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
28 3 0.06
29 20 0.38
30 22 0.42
31 8 0.15
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (27 bp):
TTTTATAATTTTTTTATATTTATAAAA
Found at i:48305698 original size:30 final size:29
Alignment explanation
Indices: 48305634--48305719 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 29
48305624 TTTTTACATT
* * * *
48305634 TTTTATAATTTTCTTATGACTT-TATAAAA
1 TTTTATAATTTTTTTATAATTTCTAT-ATA
48305663 TTTTATAATTTATTTCTAT-ATTTCTATATA
1 TTTTATAATTT-TTT-TATAATTTCTATATA
*
48305693 TTTTATAATTTTTTTATAATTTTTATA
1 TTTTATAATTTTTTTATAATTTCTATA
48305720 AAATTTTTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
28 3 0.06
29 22 0.45
30 18 0.37
31 6 0.12
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (29 bp):
TTTTATAATTTTTTTATAATTTCTATATA
Found at i:48305726 original size:19 final size:19
Alignment explanation
Indices: 48305654--48305835 Score: 88
Period size: 20 Copynumber: 9.3 Consensus size: 19
48305644 TTCTTATGAC
48305654 TTTATAAAATTTTATAATT
1 TTTATAAAATTTTATAATT
* *
48305673 TATT-TCTATATTTCTAT-ATAT
1 T-TTAT-AAAATTT-TATAAT-T
**
48305694 TTTATAATTTTTTTATAATT
1 TTTATAA-AATTTTATAATT
*
48305714 TTTATAAAATTTT-TCAAGT
1 TTTATAAAATTTTAT-AATT
* * *
48305733 TTTA-ATAATTGTTTTACAAT
1 TTTATAAAATT-TTATA-ATT
**
48305753 TTTATATTTATTTTATAATT
1 TTTATA-AAATTTTATAATT
*
48305773 TTTA-ATAAATTTTATATTT
1 TTTATA-AAATTTTATAATT
* *
48305792 TTTATTAAAATTTAATTATT
1 TTTA-TAAAATTTTATAATT
*
48305812 TTTAT-AAATTTTATTGATT
1 TTTATAAAATTTTA-TAATT
48305831 TTTAT
1 TTTAT
48305836 TTTTATCATT
Statistics
Matches: 127, Mismatches: 20, Indels: 32
0.71 0.11 0.18
Matches are distributed among these distances:
18 13 0.10
19 42 0.33
20 50 0.39
21 18 0.14
22 4 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTATAAAATTTTATAATT
Found at i:48305815 original size:29 final size:27
Alignment explanation
Indices: 48305773--48305849 Score: 68
Period size: 29 Copynumber: 2.8 Consensus size: 27
48305763 TTTTATAATT
* *
48305773 TTTAATAAATTTTATATTTTTTATTAAAA
1 TTTAATTATTTTTATATTTTTTATT--AA
** *
48305802 TTTAATTATTTTTATAAATTTTATTGA
1 TTTAATTATTTTTATATTTTTTATTAA
48305829 TTT--TTATTTTTATCATTTTTT
1 TTTAATTATTTTTAT-ATTTTTT
48305850 GTCACAAGTC
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
25 10 0.25
26 5 0.12
27 4 0.10
29 21 0.52
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTAATTATTTTTATATTTTTTATTAA
Found at i:48308705 original size:14 final size:14
Alignment explanation
Indices: 48308658--48308707 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
48308648 AGCTATGTGT
*
48308658 ATGCATATGTGATG
1 ATGCATATGTGGTG
*
48308672 ATGTAACTATGT-GT-
1 ATG-CA-TATGTGGTG
48308686 ATGCATATGTGGTG
1 ATGCATATGTGGTG
48308700 ATGCATAT
1 ATGCATAT
48308708 TCGGCTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 8
0.73 0.08 0.20
Matches are distributed among these distances:
12 5 0.17
13 3 0.10
14 14 0.48
15 2 0.07
16 5 0.17
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (14 bp):
ATGCATATGTGGTG
Found at i:48317150 original size:36 final size:36
Alignment explanation
Indices: 48317087--48317160 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
48317077 CTAATAAAGA
48317087 AAGAATCATTCAATTTTCCTAAATTCGTCTACTCCT
1 AAGAATCATTCAATTTTCCTAAATTCGTCTACTCCT
48317123 AAGAATCATTCAATTTTCCTAAATTCGTCTACTCCT
1 AAGAATCATTCAATTTTCCTAAATTCGTCTACTCCT
48317159 AA
1 AA
48317161 TCCTACTAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.38
Consensus pattern (36 bp):
AAGAATCATTCAATTTTCCTAAATTCGTCTACTCCT
Found at i:48319484 original size:50 final size:50
Alignment explanation
Indices: 48319422--48319706 Score: 320
Period size: 50 Copynumber: 5.6 Consensus size: 50
48319412 CAATGTCATA
* * ** * * *
48319422 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAAGTGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTAAGTGCCAACGCCATG
** **
48319472 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTAAGTGCCAACGCCATG
**
48319522 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTAAGTGCCAACGCCATG
* * *
48319572 TCCCAAACATGGTCTTACATGGGACCTCTCATCT-CGATGCCAACACCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTAAG-TGCCAACGCCATG
* * *
48319622 TCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCCAATGTCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTC---ATCT-AA-G-TGCCAACGCCATG
*
48319678 TCCCAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACATGGTCTTACATGGGACCTCT
48319707 TTACCCAAAT
Statistics
Matches: 203, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
49 1 0.00
50 159 0.78
53 4 0.02
56 39 0.19
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTAAGTGCCAACGCCATG
Found at i:48319552 original size:100 final size:100
Alignment explanation
Indices: 48319422--48319706 Score: 354
Period size: 100 Copynumber: 2.8 Consensus size: 100
48319412 CAATGTCATA
* ** *
48319422 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAAGTGCCCATGCCATGTCCCAGACATGGTCT
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAAGTGCCAATGCCATGTCCCAGACATGGTCT
* * * *
48319487 TACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
66 TACAGGGGACCTCTCATCTCGATGCCAACACCATG
* * ** * *
48319522 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAAGTGCCAATGCCATGTCCCAGACATGGTCT
*
48319587 TACATGGGACCTCTCATCTCGATGCCAACACCATG
66 TACAGGGGACCTCTCATCTCGATGCCAACACCATG
*
48319622 TCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCCAATGTCATGTCCCAGACA
1 TCCCAGACATGGTCTTACATGAGACCTCTCAT-A--T-AA-G-TGCCAATGCCATGTCCCAGACA
* *
48319687 TGGTCTTACATGGGATCTCT
60 TGGTCTTACAGGGGACCTCT
48319707 TTACCCAAAT
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
100 116 0.74
103 1 0.01
105 1 0.01
106 38 0.24
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (100 bp):
TCCCAGACATGGTCTTACATGAGACCTCTCATATAAGTGCCAATGCCATGTCCCAGACATGGTCT
TACAGGGGACCTCTCATCTCGATGCCAACACCATG
Found at i:48330134 original size:36 final size:36
Alignment explanation
Indices: 48330063--48330134 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
48330053 CCGAAAAAGC
*
48330063 TGTTTTTACATATATCAATAAATTTATATTTTAAAT
1 TGTTTTTACATATATCAATAAATTTATATTATAAAT
*
48330099 TGTTTTTACATATATTGCAAT-TATTTAT-TTATAAAT
1 TGTTTTTACATATA-T-CAATAAATTTATATTATAAAT
48330135 AAATTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 21 0.66
37 7 0.22
38 4 0.12
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (36 bp):
TGTTTTTACATATATCAATAAATTTATATTATAAAT
Found at i:48333165 original size:16 final size:16
Alignment explanation
Indices: 48333144--48333177 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
48333134 GGACGGAGAG
*
48333144 GAAATGAGGAGGAAAT
1 GAAATGAGAAGGAAAT
48333160 GAAATGAGAAGGAAAT
1 GAAATGAGAAGGAAAT
48333176 GA
1 GA
48333178 GAGGCTGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.35, T:0.12
Consensus pattern (16 bp):
GAAATGAGAAGGAAAT
Found at i:48334539 original size:31 final size:30
Alignment explanation
Indices: 48334498--48334555 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
48334488 AACAAGAATG
48334498 AAAATAAAGTCTAAAACCTAAA-AGAAAGGA
1 AAAATAAAGTCTAAAA-CTAAAGAGAAAGGA
48334528 AAAACTAAAGTCTAAAACTAAAGAGAAA
1 AAAA-TAAAGTCTAAAACTAAAGAGAAA
48334556 ATTATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.64, C:0.10, G:0.12, T:0.14
Consensus pattern (30 bp):
AAAATAAAGTCTAAAACTAAAGAGAAAGGA
Found at i:48342514 original size:22 final size:23
Alignment explanation
Indices: 48342480--48342523 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
48342470 CAACCAATCC
**
48342480 ATTTCAACATATTTTCAAGATAG
1 ATTTCAACATATTCACAAGATAG
*
48342503 ATTT-AACGTATTCACAAGATA
1 ATTTCAACATATTCACAAGATA
48342524 ACCTCATCGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTTCAACATATTCACAAGATAG
Found at i:48357138 original size:14 final size:14
Alignment explanation
Indices: 48357119--48357160 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
48357109 TTTAAAAATT
48357119 TAAAAAATAATTTA
1 TAAAAAATAATTTA
*
48357133 T-AAAAATAAAATTA
1 TAAAAAAT-AATTTA
48357147 TAAAAAATATATTT
1 TAAAAAATA-ATTT
48357161 TTAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 6 0.26
14 8 0.35
15 9 0.39
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TAAAAAATAATTTA
Found at i:48357139 original size:13 final size:14
Alignment explanation
Indices: 48357114--48357152 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
48357104 TAAAATTTAA
48357114 AAATTTA-AAAAAT
1 AAATTTATAAAAAT
48357127 -AATTTATAAAAAT
1 AAATTTATAAAAAT
*
48357140 AAAATTATAAAAA
1 AAATTTATAAAAA
48357153 ATATATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 6 0.26
13 6 0.26
14 11 0.48
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAATTTATAAAAAT
Found at i:48357171 original size:29 final size:27
Alignment explanation
Indices: 48357102--48357172 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
48357092 ATTAATTAGT
* *
48357102 TTTAAAATTTAAAAATTTAAAAAATAA
1 TTTATAATTTTAAAATTTAAAAAATAA
***
48357129 TTTATAAAAATAAAATTATAAAAAATATA
1 TTTATAATTTTAAAATT-TAAAAAATA-A
*
48357158 TTTTTAATTTTAAAA
1 TTTATAATTTTAAAA
48357173 AATTAATTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
27 12 0.36
28 9 0.27
29 12 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (27 bp):
TTTATAATTTTAAAATTTAAAAAATAA
Found at i:48357415 original size:19 final size:19
Alignment explanation
Indices: 48357391--48357428 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
48357381 TGCCATAGTG
48357391 GAACGAAAGTAATTTTTAA
1 GAACGAAAGTAATTTTTAA
48357410 GAACGAAAGTAATTTTTAA
1 GAACGAAAGTAATTTTTAA
48357429 TAATAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
GAACGAAAGTAATTTTTAA
Found at i:48357434 original size:3 final size:3
Alignment explanation
Indices: 48357426--48357452 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
48357416 AAGTAATTTT
48357426 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
48357453 AACAATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:48363894 original size:35 final size:33
Alignment explanation
Indices: 48363826--48363894 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 33
48363816 GTCAGTAAAA
*
48363826 TATTTTTCAGAAAATGATTTATGAAAAATATTT
1 TATTTTTCAGAAAATAATTTATGAAAAATATTT
* *
48363859 TATTTTTCTGTAAAATAATTTACTGGAAAATATTT
1 TATTTTTCAG-AAAATAATTTA-TGAAAAATATTT
48363894 T
1 T
48363895 CTGGTATTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
33 9 0.29
34 10 0.32
35 12 0.39
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (33 bp):
TATTTTTCAGAAAATAATTTATGAAAAATATTT
Found at i:48364234 original size:37 final size:37
Alignment explanation
Indices: 48364184--48364255 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
48364174 ACTTATTTTT
48364184 CCATTAGATTAGAATTCACTAACTATTTAATTAATCA
1 CCATTAGATTAGAATTCACTAACTATTTAATTAATCA
48364221 CCATTAGATTAGAATTCACTAACTATTTAATTAAT
1 CCATTAGATTAGAATTCACTAACTATTTAATTAAT
48364256 TATGACCAGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (37 bp):
CCATTAGATTAGAATTCACTAACTATTTAATTAATCA
Found at i:48365591 original size:44 final size:44
Alignment explanation
Indices: 48365528--48365633 Score: 176
Period size: 44 Copynumber: 2.4 Consensus size: 44
48365518 TGTAGGCTTT
* * *
48365528 CAAAAAATGCTCAAATCACCTAAACTCAAAATACTGAGTCATCC
1 CAAAACATGCTCATATCACCTAAACTCAAAATACCGAGTCATCC
48365572 CAAAACATGCTCATATCACCTAAACTCAAAATACCGAGTCATCC
1 CAAAACATGCTCATATCACCTAAACTCAAAATACCGAGTCATCC
48365616 CAAAACATGCTCAATATC
1 CAAAACATGCTC-ATATC
48365634 TCTACTTCTT
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
44 53 0.91
45 5 0.09
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (44 bp):
CAAAACATGCTCATATCACCTAAACTCAAAATACCGAGTCATCC
Found at i:48365925 original size:14 final size:14
Alignment explanation
Indices: 48365906--48365946 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
48365896 AGCAGGACTG
*
48365906 GAGGTGGACCGGTA
1 GAGGTGGATCGGTA
* *
48365920 GAGGTGGATCAGTG
1 GAGGTGGATCGGTA
48365934 GAGGTGGATCGGT
1 GAGGTGGATCGGT
48365947 GCTCGGTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.20, C:0.10, G:0.51, T:0.20
Consensus pattern (14 bp):
GAGGTGGATCGGTA
Found at i:48366246 original size:14 final size:14
Alignment explanation
Indices: 48366227--48366256 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48366217 GTAGACTGGG
48366227 GGTGGACCGGTGGA
1 GGTGGACCGGTGGA
*
48366241 GGTGGATCGGTGGA
1 GGTGGACCGGTGGA
48366255 GG
1 GG
48366257 ACGGAGGTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.60, T:0.17
Consensus pattern (14 bp):
GGTGGACCGGTGGA
Found at i:48369695 original size:20 final size:19
Alignment explanation
Indices: 48369640--48369697 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
48369630 TACATATTTT
*
48369640 AAAATAATTAAACATAAAATA
1 AAAATAATT-AATA-AAAATA
*
48369661 AAAATAATTAATAAAAATT
1 AAAATAATTAATAAAAATA
48369680 AAAA-AATATAATTAAAAA
1 AAAATAAT-TAA-TAAAAA
48369698 GATAAGTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 3 0.09
19 12 0.36
20 9 0.27
21 9 0.27
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATAATTAATAAAAATA
Found at i:48374250 original size:23 final size:25
Alignment explanation
Indices: 48374222--48374292 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
48374212 GGATAGCTAA
* *
48374222 ATATCAGGAAGTTCA-AACGAG-TT
1 ATATCAGGAAGTTCACAAAGAGCCT
*
48374245 ATATCAGGAAGCTCACAAAGAGCCT
1 ATATCAGGAAGTTCACAAAGAGCCT
* *
48374270 ATATCAGGACGTTCATAAAGAGC
1 ATATCAGGAAGTTCACAAAGAGC
48374293 TGCGGTATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
23 14 0.35
24 5 0.12
25 21 0.52
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.21
Consensus pattern (25 bp):
ATATCAGGAAGTTCACAAAGAGCCT
Found at i:48377333 original size:27 final size:26
Alignment explanation
Indices: 48377302--48377353 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
48377292 TTCTGAAAGT
48377302 ATTTTC-TTTTTTCATTTCTAGAAAATA
1 ATTTTCATTTTTT-ATTTCTA-AAAATA
*
48377329 ATTTTCATTTTTTATTTTTAAAAAT
1 ATTTTCATTTTTTATTTCTAAAAAT
48377354 TAAAAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTTCATTTTTTATTTCTAAAAATA
Found at i:48377397 original size:27 final size:27
Alignment explanation
Indices: 48377367--48377421 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
48377357 AAAAAACACG
48377367 TTTAATAA-ATAAAAAT-AAAAAATTATT
1 TTTAATAAGA-AAAAATGAAAAAA-TATT
48377394 TTTAATAAGAAAAAATGAAAAAATATT
1 TTTAATAAGAAAAAATGAAAAAATATT
48377421 T
1 T
48377422 GGTAACTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.35
Consensus pattern (27 bp):
TTTAATAAGAAAAAATGAAAAAATATT
Found at i:48377682 original size:22 final size:24
Alignment explanation
Indices: 48377656--48377702 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
48377646 TTTTTATTGT
* *
48377656 TTTTTATTTT-TCACATATTTTTA
1 TTTTCATTTTCTCAAATATTTTTA
48377679 TTTTCATTTTCTCAAATATTTTTA
1 TTTTCATTTTCTCAAATATTTTTA
48377703 AAATTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTTCATTTTCTCAAATATTTTTA
Found at i:48381438 original size:17 final size:17
Alignment explanation
Indices: 48381405--48381438 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48381395 GTTCCATTAC
*
48381405 CCAAGCATCAACGTAAT
1 CCAAGCATCAACATAAT
*
48381422 CCAAGCATCACCATAAT
1 CCAAGCATCAACATAAT
48381439 AGAGTATGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.18
Consensus pattern (17 bp):
CCAAGCATCAACATAAT
Found at i:48385719 original size:24 final size:24
Alignment explanation
Indices: 48385676--48385729 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
48385666 GTATACACAA
*
48385676 ATATATAACTAAATAGATATAAAT
1 ATATATAACTAAACAGATATAAAT
*
48385700 ATATATAAACTAAACA-ATATATAT
1 ATATAT-AACTAAACAGATATAAAT
*
48385724 GTATAT
1 ATATAT
48385730 GAAAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.35
Consensus pattern (24 bp):
ATATATAACTAAACAGATATAAAT
Found at i:48390601 original size:27 final size:27
Alignment explanation
Indices: 48390547--48390601 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
48390537 CCAATTCGCC
* *
48390547 AACCTACTAGTGAACCTCTATTTTCCA
1 AACCTACTAGCGAACCTCTATTTGCCA
48390574 AACCTACTAGCGAACC-CTAGTTTGCCA
1 AACCTACTAGCGAACCTCTA-TTTGCCA
48390601 A
1 A
48390602 TCACACTGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.27
Consensus pattern (27 bp):
AACCTACTAGCGAACCTCTATTTGCCA
Found at i:48393917 original size:37 final size:37
Alignment explanation
Indices: 48393876--48393951 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
48393866 GTTTCGAGAC
48393876 CACAAAATGATTTTGTAAAAATTTCGTTCGAAAATTT
1 CACAAAATGATTTTGTAAAAATTTCGTTCGAAAATTT
*
48393913 CACAAAATGATTTTGTGAAAATTTCGTTCGAAAATTT
1 CACAAAATGATTTTGTAAAAATTTCGTTCGAAAATTT
48393950 CA
1 CA
48393952 ACGTTTGGGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (37 bp):
CACAAAATGATTTTGTAAAAATTTCGTTCGAAAATTT
Found at i:48395116 original size:56 final size:51
Alignment explanation
Indices: 48395029--48395217 Score: 179
Period size: 50 Copynumber: 3.6 Consensus size: 51
48395019 AAGAGATCGT
*
48395029 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCC-C
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---AGA-TA--AGAGGTCCTC
*
48395085 ATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATAAGAGGTCCTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCTC
* * * ** **
48395136 -CGTAAGACCATGTCTGGGACATGGCA-TGAGCACCGATATGGGAACTCC-C
1 ATGTAAGACCATGTCTGGGACATGGCATTG-GCACCAAGATAAGAGGTCCTC
* * *
48395185 ATGAAAGACCATATCTGGGATATGGCATTGGCA
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCA
48395218 GTACAGAAAA
Statistics
Matches: 115, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
49 3 0.03
50 70 0.61
51 3 0.03
52 2 0.02
53 3 0.03
56 34 0.30
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (51 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATAAGAGGTCCTC
Found at i:48395483 original size:12 final size:12
Alignment explanation
Indices: 48395466--48395504 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
48395456 ATGAGTTAAT
48395466 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
48395478 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
48395490 TAAGTGAGTAAG
1 TAAGTAAGCAAG
48395502 TAA
1 TAA
48395505 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:48408538 original size:45 final size:45
Alignment explanation
Indices: 48408474--48408689 Score: 276
Period size: 45 Copynumber: 4.8 Consensus size: 45
48408464 TATTGAGTAT
*
48408474 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
* *
48408519 CATTGATTATAAAGGTGGTTGCTATGTGTTGATTCCACCGGGTAC
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
* * * *
48408564 CATTGATTATAAAGGAGGTTGCTATGTGCTGATTCCACCAGAAAT
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
** * * * *
48408609 CATTGAAAATAAAGGTGGTTGCTATTTGCTGATTCTACCGAATAT
1 CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
*
48408654 AATTGATTAT-AAGAGTGG-TGCTATGTGCTGA-TCCAC
1 CATTGATTATAAAG-GTGGTTGCTATGTGCTGATTCCAC
48408690 TGTGTAACGA
Statistics
Matches: 150, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
43 4 0.03
44 15 0.10
45 131 0.87
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (45 bp):
CATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACCGGATAC
Found at i:48420924 original size:13 final size:13
Alignment explanation
Indices: 48420906--48420930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48420896 ATGGTCACCC
48420906 AAAAATAAAAAAT
1 AAAAATAAAAAAT
48420919 AAAAATAAAAAA
1 AAAAATAAAAAA
48420931 AAAGCCAATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:48436314 original size:41 final size:41
Alignment explanation
Indices: 48436172--48436316 Score: 182
Period size: 41 Copynumber: 3.5 Consensus size: 41
48436162 CTTATTAAAA
* * * * ** *
48436172 TACACTGGCATAAAGCCTTCTAGGCACAAAGCCAAATATGA
1 TACACCGGCATGAAGCCTGCTAGGCATAAAGCCTGATATGG
* *
48436213 TACACCGGCACGAAGCCTACTAGGCATAAAGCCTGATATGG
1 TACACCGGCATGAAGCCTGCTAGGCATAAAGCCTGATATGG
* *
48436254 TACACCGACATGAAACCTGCTAGGCATAAAGCCTGATATGG
1 TACACCGGCATGAAGCCTGCTAGGCATAAAGCCTGATATGG
*
48436295 TACATCGGCATGAAGCCTGCTA
1 TACACCGGCATGAAGCCTGCTA
48436317 TAATTCACCG
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 89 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (41 bp):
TACACCGGCATGAAGCCTGCTAGGCATAAAGCCTGATATGG
Found at i:48439571 original size:20 final size:20
Alignment explanation
Indices: 48439535--48439573 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
48439525 TTGCTTCTTT
*
48439535 TTTACTTACTCTCTTACTTG
1 TTTACTTACTCTATTACTTG
48439555 TTTACTTACT-TGATTACTT
1 TTTACTTACTCT-ATTACTT
48439574 AAATAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.18, C:0.21, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTCTATTACTTG
Found at i:48439873 original size:50 final size:50
Alignment explanation
Indices: 48439815--48439923 Score: 137
Period size: 50 Copynumber: 2.2 Consensus size: 50
48439805 TATCCTAGAA
* ** * * *
48439815 ATGGTCTTATATGGGAGTTTTCATATCGGTGCCCATGCTATGTCCCAAAC
1 ATGGTCTTATAGGGGACCTCTCATATCGATGCCAATGCTATGTCCCAAAC
* * *
48439865 ATGGTCTTATGGGGGACCTCTCATCTCGATGCCAATGCTATGTCCCATAC
1 ATGGTCTTATAGGGGACCTCTCATATCGATGCCAATGCTATGTCCCAAAC
48439915 ATGGTCTTA
1 ATGGTCTTA
48439924 CGTGGGACCT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (50 bp):
ATGGTCTTATAGGGGACCTCTCATATCGATGCCAATGCTATGTCCCAAAC
Found at i:48439931 original size:50 final size:50
Alignment explanation
Indices: 48439835--48439939 Score: 147
Period size: 50 Copynumber: 2.1 Consensus size: 50
48439825 ATGGGAGTTT
* * *
48439835 TCATATCGGTGCCCATGCTATGTCCCAAACATGGTCTTATGGGGGACCTC
1 TCATATCGATGCCAATGCTATGTCCCAAACATGGTCTTACGGGGGACCTC
* * * *
48439885 TCATCTCGATGCCAATGCTATGTCCCATACATGGTCTTACGTGGGACCTT
1 TCATATCGATGCCAATGCTATGTCCCAAACATGGTCTTACGGGGGACCTC
48439935 TCATA
1 TCATA
48439940 ACCTCAATAA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
TCATATCGATGCCAATGCTATGTCCCAAACATGGTCTTACGGGGGACCTC
Found at i:48447020 original size:15 final size:15
Alignment explanation
Indices: 48447000--48447037 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
48446990 GTACCTAAAA
48447000 GTGAAAATGAAAATG
1 GTGAAAATGAAAATG
48447015 GTGAAAATGAAAATG
1 GTGAAAATGAAAATG
*
48447030 ATGAAAAT
1 GTGAAAAT
48447038 AAAGAGATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (15 bp):
GTGAAAATGAAAATG
Found at i:48447241 original size:15 final size:15
Alignment explanation
Indices: 48447221--48447258 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
48447211 GTACCTAAAA
48447221 GTGAAAATGAAAATG
1 GTGAAAATGAAAATG
48447236 GTGAAAATGAAAATG
1 GTGAAAATGAAAATG
*
48447251 ATGAAAAT
1 GTGAAAAT
48447259 AAAGAGATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (15 bp):
GTGAAAATGAAAATG
Found at i:48449215 original size:5 final size:6
Alignment explanation
Indices: 48449203--48449232 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
48449193 AGTTGATTTG
48449203 AAGAAA AAGAAA AAGAAA AAGAAA AGAGAA
1 AAGAAA AAGAAA AAGAAA AAGAAA A-AGAA
48449233 TTTCTCTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:48450597 original size:20 final size:20
Alignment explanation
Indices: 48450572--48450611 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
48450562 ATTAAGAATG
*
48450572 TTATTAAATTGTATATTATT
1 TTATTAAATTATATATTATT
*
48450592 TTATTAAATTATTTATTATT
1 TTATTAAATTATATATTATT
48450612 ATTTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TTATTAAATTATATATTATT
Found at i:48456736 original size:18 final size:19
Alignment explanation
Indices: 48456706--48456742 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
48456696 ATGGGATAAG
*
48456706 AGAATTCCTACTATTATTT
1 AGAATTCCTACTACTATTT
48456725 AGAATT-CTACTACTATTT
1 AGAATTCCTACTACTATTT
48456743 TTTTCTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (19 bp):
AGAATTCCTACTACTATTT
Found at i:48467122 original size:16 final size:17
Alignment explanation
Indices: 48467101--48467133 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
48467091 TTTATTTATT
48467101 TTTTAAAAT-TTTTTAA
1 TTTTAAAATATTTTTAA
48467117 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
48467134 AATACTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:48467143 original size:23 final size:22
Alignment explanation
Indices: 48467117--48467179 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
48467107 AATTTTTTAA
48467117 TTTTAAAATATTTTTAAAATACT
1 TTTTAAAATATTTTTAAAATA-T
** * *
48467140 TTTTAACTTTTTTTTAATATAT
1 TTTTAAAATATTTTTAAAATAT
48467162 TTTTAAAATACTTTTTAA
1 TTTTAAAATA-TTTTTAA
48467180 CTTTTTTTAA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
22 8 0.25
23 24 0.75
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTAAAATATTTTTAAAATAT
Found at i:48467156 original size:34 final size:36
Alignment explanation
Indices: 48467110--48467216 Score: 146
Period size: 34 Copynumber: 2.9 Consensus size: 36
48467100 TTTTTAAAAT
48467110 TTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAC
1 TTTTT-ATTTTAAAATATTTTTAAAATACTTTTTAAC
*
48467147 -TTTT-TTTTAATATATTTTTAAAATACTTTTTAAC
1 TTTTTATTTTAAAATATTTTTAAAATACTTTTTAAC
*
48467181 TTTTTTTAATTTTAAAATATTTTTAAAAGACTTTTT
1 --TTTTT-ATTTTAAAATATTTTTAAAATACTTTTT
48467217 TTAATTTTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
34 29 0.47
36 4 0.06
37 4 0.06
39 25 0.40
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (36 bp):
TTTTTATTTTAAAATATTTTTAAAATACTTTTTAAC
Found at i:48467774 original size:18 final size:19
Alignment explanation
Indices: 48467753--48467798 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
48467743 TGAAGTCAAG
*
48467753 GATGAAGATGGA-TATGAA
1 GATGAAGATGGACAATGAA
* *
48467771 GATGTAGA-CGACAATGAA
1 GATGAAGATGGACAATGAA
48467789 GATGAAGATG
1 GATGAAGATG
48467799 AGCACGAGGG
Statistics
Matches: 21, Mismatches: 5, Indels: 3
0.72 0.17 0.10
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.43, C:0.04, G:0.33, T:0.20
Consensus pattern (19 bp):
GATGAAGATGGACAATGAA
Found at i:48477104 original size:47 final size:47
Alignment explanation
Indices: 48476669--48477070 Score: 570
Period size: 47 Copynumber: 8.6 Consensus size: 47
48476659 ATACATGAGC
* * * *
48476669 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* ** * * *
48476716 TAAGGCCAAATGGAAAATGTGATGAATGTGAACATGCATTTGTGTGG
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
48476763 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
48476810 TAAGGCCGAATGGCCAACGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
48476857 TAAGGCCGAATGGCCAATGTGACGAATATGAACATGTATATCTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
48476904 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
48476951 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
48476998 TAAGGCCGAATGACCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
48477045 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
48477071 CGTGGATGTG
Statistics
Matches: 321, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 321 1.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:48477137 original size:46 final size:46
Alignment explanation
Indices: 48477084--48477174 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
48477074 GGATGTGTAT
* * *
48477084 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGCGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
* * * *
48477130 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATG
48477175 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATACGTATGAGATGG
Found at i:48485248 original size:50 final size:50
Alignment explanation
Indices: 48485128--48485374 Score: 221
Period size: 50 Copynumber: 4.8 Consensus size: 50
48485118 GATAATAACA
* * ** * *
48485128 TGCCAAAGCCATGTCCCAGACATGGT-TTAACATGGGATGTTTCTTATAC--
1 TGCCAATGCCATGTCCCAGATATGGTCTT-ACATGGGACCTCTCATAT-CGG
* * **
48485177 TGCCAATGCCATATCCCAGATATGGTCTTACTTGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* * ** *
48485227 TGCCCATGCCATGTCCTAGATATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
* *
48485277 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* * *
48485333 TGCTAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCT
48485375 TTACCCAAAT
Statistics
Matches: 164, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.22
50 84 0.51
53 2 0.01
56 41 0.25
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATATCGG
Found at i:48487148 original size:23 final size:22
Alignment explanation
Indices: 48487104--48487149 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
48487094 TTAAATAAAA
*
48487104 AAACATAAGAATCTAGGGAATT
1 AAACATAAGAATCTAGGAAATT
* *
48487126 AAACATAAGACCTTTAGGAAATT
1 AAACATAAGA-ATCTAGGAAATT
48487149 A
1 A
48487150 TCTAAGCACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.50, C:0.11, G:0.15, T:0.24
Consensus pattern (22 bp):
AAACATAAGAATCTAGGAAATT
Found at i:48488595 original size:34 final size:34
Alignment explanation
Indices: 48488552--48488620 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
48488542 TCTTTAAGAG
48488552 ATAAATTAGGCAGCATAGCAGTTTCATAATAAAT
1 ATAAATTAGGCAGCATAGCAGTTTCATAATAAAT
48488586 ATAAATTAGGCAGCATAGCAGTTTCATAATAAAT
1 ATAAATTAGGCAGCATAGCAGTTTCATAATAAAT
48488620 A
1 A
48488621 ACATCACTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (34 bp):
ATAAATTAGGCAGCATAGCAGTTTCATAATAAAT
Done.