Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 167 of 213
Found at i:50076823 original size:23 final size:22
Alignment explanation
Indices: 50076777--50076830 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
50076767 AGCTATCCAA
*
50076777 AACCCAAAATCCCAAATTCAAC
1 AACCCTAAATCCCAAATTCAAC
**
50076799 AACCCTAAATCCCTAAATTTGAC
1 AACCCTAAATCCC-AAATTCAAC
50076822 AACCCTAAA
1 AACCCTAAA
50076831 CAATTTATGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.19
Consensus pattern (22 bp):
AACCCTAAATCCCAAATTCAAC
Found at i:50077178 original size:21 final size:21
Alignment explanation
Indices: 50077154--50077222 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
50077144 GATCTATTTT
50077154 AATAATTTTATATTTCAAAAA
1 AATAATTTTATATTTCAAAAA
* * *
50077175 AATAATATAATAATTT-----T
1 AATAATTTTAT-ATTTCAAAAA
*
50077192 AATAATTTCATATTTCAAAAA
1 AATAATTTTATATTTCAAAAA
50077213 AATAATTTTA
1 AATAATTTTA
50077223 ATAATTTTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
16 4 0.11
17 9 0.26
21 18 0.51
22 4 0.11
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (21 bp):
AATAATTTTATATTTCAAAAA
Found at i:50077205 original size:38 final size:39
Alignment explanation
Indices: 50077149--50077232 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 39
50077139 GGAATGATCT
*
50077149 ATTTTAATAATTTTATATTTCAAAAAAATAA-TATAATA
1 ATTTTAATAATTTCATATTTCAAAAAAATAATTATAATA
*
50077187 ATTTTAATAATTTCATATTTCAAAAAAATAATTTTAATA
1 ATTTTAATAATTTCATATTTCAAAAAAATAATTATAATA
50077226 ATTTTAA
1 ATTTTAA
50077233 AGTCATTTGC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 30 0.70
39 13 0.30
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (39 bp):
ATTTTAATAATTTCATATTTCAAAAAAATAATTATAATA
Found at i:50084847 original size:39 final size:39
Alignment explanation
Indices: 50084793--50084870 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
50084783 ATCCTCACCT
50084793 TCACTTAAGATTGTTTATGGTGGTGATTGATTCTTTCAA
1 TCACTTAAGATTGTTTATGGTGGTGATTGATTCTTTCAA
*
50084832 TCACTTAAGTTTGTTTATGGTGGTGATTGATTCTTTCAA
1 TCACTTAAGATTGTTTATGGTGGTGATTGATTCTTTCAA
50084871 ATTAGCCGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.10, G:0.21, T:0.47
Consensus pattern (39 bp):
TCACTTAAGATTGTTTATGGTGGTGATTGATTCTTTCAA
Found at i:50090298 original size:22 final size:19
Alignment explanation
Indices: 50090273--50090316 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
50090263 TGATAATAAC
50090273 TAATATATAATTATATTTATTA
1 TAATATAT-ATTA-A-TTATTA
*
50090295 TAATGTATATTAATTATTA
1 TAATATATATTAATTATTA
50090314 TAA
1 TAA
50090317 ACTTGGTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 1 0.05
21 4 0.19
22 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:50090305 original size:16 final size:15
Alignment explanation
Indices: 50090273--50090311 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
50090263 TGATAATAAC
50090273 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
50090289 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
50090305 TAATTAT
1 TAATTAT
50090312 TATAAACTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:50092485 original size:31 final size:31
Alignment explanation
Indices: 50092447--50092507 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
50092437 TTATTTAATG
50092447 TTTCTTAGGATATTTAATGTTTTTTGGATTC
1 TTTCTTAGGATATTTAATGTTTTTTGGATTC
50092478 TTTCTTAGGATATTTAATGTTTTTTGGATT
1 TTTCTTAGGATATTTAATGTTTTTTGGATT
50092508 AGGTTCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.20, C:0.05, G:0.16, T:0.59
Consensus pattern (31 bp):
TTTCTTAGGATATTTAATGTTTTTTGGATTC
Found at i:50093526 original size:144 final size:144
Alignment explanation
Indices: 50093348--50093635 Score: 436
Period size: 145 Copynumber: 2.0 Consensus size: 144
50093338 ATACAGTCAA
50093348 ATGCTCGTGTTAAAAAAAGAAAGAAAGAGCATATGTACGCAAAAGAAA-TAGATGTACAAAAGAG
1 ATGCTCGTGTTAAAAAAAGAAAGAAAGAGCATATGTACGCAAAAGAAATTAGATGTACAAAAGAG
* * * *
50093412 CATGTGAAAGTAAAATGAGTTGGTACATTAAAGGTATTTATTTCGAAGGTCCGA-TGCAAGCTGA
66 CATATGAAAGCAAAATGAGTTGGTACATTAAAGGTACTTATTCCGAAGGT-CGATTGCAAGCTGA
*
50093476 GTCTAGGGTTTTTAG
130 GTCTAGGGGTTTTAG
* * *
50093491 ATGCTCGTGTTAAAAAAAGAAAAGAAAGAGCATATGTACTCAAAAGAAATTAGTTGTATAAAAGA
1 ATGCTCGTGTTAAAAAAAG-AAAGAAAGAGCATATGTACGCAAAAGAAATTAGATGTACAAAAGA
** * *
50093556 GCATATGAAAGCAAAATGAGTTGGTGTATTGAAGGTACTTATTCCGAAGGTCTATTGCAAGCTGA
65 GCATATGAAAGCAAAATGAGTTGGTACATTAAAGGTACTTATTCCGAAGGTCGATTGCAAGCTGA
50093621 GTCTAGGGGTTTTAG
130 GTCTAGGGGTTTTAG
50093636 CTTAAAATTA
Statistics
Matches: 130, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
143 19 0.15
144 30 0.23
145 81 0.62
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (144 bp):
ATGCTCGTGTTAAAAAAAGAAAGAAAGAGCATATGTACGCAAAAGAAATTAGATGTACAAAAGAG
CATATGAAAGCAAAATGAGTTGGTACATTAAAGGTACTTATTCCGAAGGTCGATTGCAAGCTGAG
TCTAGGGGTTTTAG
Found at i:50097691 original size:26 final size:27
Alignment explanation
Indices: 50097617--50097698 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
50097607 TTGATATCTG
* * * *
50097617 GACCATAATACCCCTTTAGAGTAAAAT
1 GACCGTAATGCCCCTGTAGGGTAAAAT
*
50097644 AACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATGCCCCTGTAGGGTAAAAT
50097671 GACCGTAATG-CCCTGGT-GGGT-AAAT
1 GACCGTAATGCCCCT-GTAGGGTAAAAT
50097696 GAC
1 GAC
50097699 TATTTTTGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 7 0.15
26 8 0.17
27 33 0.69
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
GACCGTAATGCCCCTGTAGGGTAAAAT
Found at i:50098056 original size:32 final size:32
Alignment explanation
Indices: 50097931--50098159 Score: 107
Period size: 32 Copynumber: 7.3 Consensus size: 32
50097921 ATCTCGATGC
* * *
50097931 TACTAATGGTTTTGTGTCGATCATAGT-A-TCGT
1 TACTAATGGCTGTGTGCCGATCATA-TCACT-GT
* * ** * *
50097963 TACTGATGGCTTTGTATCGATCATCTTACTGT
1 TACTAATGGCTGTGTGCCGATCATATCACTGT
** * *
50097995 TACCGATGGTTGTGTGCC-ATTCATGTCACTGT
1 TACTAATGGCTGTGTGCCGA-TCATATCACTGT
*
50098027 TATTAATGGCTGTGTGCCGATCATATCAC---
1 TACTAATGGCTGTGTGCCGATCATATCACTGT
* * * * *
50098056 TACTACT-GAT-TGTGCCGATCATGTTACCGT
1 TACTAATGGCTGTGTGCCGATCATATCACTGT
* * * *
50098086 TATTGATGGCTGTGTGTCGATCATATCACTGC
1 TACTAATGGCTGTGTGCCGATCATATCACTGT
* * * * *
50098118 TACTAATGGCTTTGTGTCAATCACATTACTG-
1 TACTAATGGCTGTGTGCCGATCATATCACTGT
*
50098149 TACTTATGGCT
1 TACTAATGGCT
50098160 TGTAGCCATT
Statistics
Matches: 151, Mismatches: 37, Indels: 19
0.73 0.18 0.09
Matches are distributed among these distances:
27 15 0.10
28 2 0.01
29 5 0.03
30 4 0.03
31 14 0.09
32 109 0.72
33 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (32 bp):
TACTAATGGCTGTGTGCCGATCATATCACTGT
Found at i:50098088 original size:59 final size:59
Alignment explanation
Indices: 50098007--50098121 Score: 169
Period size: 59 Copynumber: 1.9 Consensus size: 59
50097997 CCGATGGTTG
*
50098007 TGTGCCATTCATGTCACTGTTATTAATGGCTGTGTGCCGATCATATCACTACTACTGAT
1 TGTGCCATTCATGTCACCGTTATTAATGGCTGTGTGCCGATCATATCACTACTACTGAT
* * * *
50098066 TGTGCCGA-TCATGTTACCGTTATTGATGGCTGTGTGTCGATCATATCACTGCTACT
1 TGTGCC-ATTCATGTCACCGTTATTAATGGCTGTGTGCCGATCATATCACTACTACT
50098122 AATGGCTTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
59 49 0.98
60 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (59 bp):
TGTGCCATTCATGTCACCGTTATTAATGGCTGTGTGCCGATCATATCACTACTACTGAT
Found at i:50098239 original size:26 final size:26
Alignment explanation
Indices: 50098210--50098263 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
50098200 GACTCTTAGC
* *
50098210 CATTCTGACTACTAGCAGCTCTGCTG
1 CATTATGACTACTAGCAGCTATGCTG
* * *
50098236 CATTATTACTACTGGTAGCTATGCTG
1 CATTATGACTACTAGCAGCTATGCTG
50098262 CA
1 CA
50098264 ATATTGATGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (26 bp):
CATTATGACTACTAGCAGCTATGCTG
Found at i:50098268 original size:26 final size:26
Alignment explanation
Indices: 50098217--50098268 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
50098207 AGCCATTCTG
* *
50098217 ACTACTAGCAGCTCTGCTGCATTATT
1 ACTACTAGCAGCTATGCTGCAATATT
* *
50098243 ACTACTGGTAGCTATGCTGCAATATT
1 ACTACTAGCAGCTATGCTGCAATATT
50098269 GATGTGAGGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (26 bp):
ACTACTAGCAGCTATGCTGCAATATT
Found at i:50103855 original size:226 final size:226
Alignment explanation
Indices: 50103457--50103906 Score: 740
Period size: 226 Copynumber: 2.0 Consensus size: 226
50103447 GCATGAATTG
* *
50103457 GGTATACGACTTCTGCAGTATGTAACGTCATTCATAATAGTGGAATTTATAGCCCAAGAAATGGG
1 GGTATACGACTTCTGCAGTATGTAACGTCATTCATAACAGTGGAATTCATAGCCCAAGAAATGGG
* *
50103522 TAAATGATATCCTCTCATTGGCATTACATGGTTGATGAAAAGTAAACGTGGCCACGGGTCGTTCG
66 TAAATGATATCCTCTCATTGGCATTACATGGTTGATGAAAAGTAAACGTGGCCACGGGTCCTTCA
* * *
50103587 TTTATGTGATGAATGACTTGATTACTATTTGATAGTAATTGACTTTTCATGAAGGAAGATGTAGT
131 TTTATGTGATGAATGACTTGATTACTATTTGATAGCAATTGACTTTTCATGAAGGAAAATGTACT
50103652 GGATACCATAAGATAAAATAAGATCATATTT
196 GGATACCATAAGATAAAATAAGATCATATTT
*
50103683 GGTATACGACTTCTGCAGTATGTAGCGTCATTCATAACAGTGGAATTCATAGCCCAAGAAATGGG
1 GGTATACGACTTCTGCAGTATGTAACGTCATTCATAACAGTGGAATTCATAGCCCAAGAAATGGG
*
50103748 TAAATGATATCTTCTCATTGGCATTACATGGTTGATGAAAAGTAAACGTGGCCACGGGTCACTT-
66 TAAATGATATCCTCTCATTGGCATTACATGGTTGATGAAAAGTAAACGTGGCCACGGGTC-CTTC
* *
50103812 ATTTATGTGATGAATGATTTGATTATTATTTGATAGCAATTGACTTTTCATGAAGGAAAATGTAC
130 ATTTATGTGATGAATGACTTGATTACTATTTGATAGCAATTGACTTTTCATGAAGGAAAATGTAC
* * * * *
50103877 TGGTTATCTTGAGATAAAATAGGATCATAT
195 TGGATACCATAAGATAAAATAAGATCATAT
50103907 GCGGAGAACG
Statistics
Matches: 207, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
226 205 0.99
227 2 0.01
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (226 bp):
GGTATACGACTTCTGCAGTATGTAACGTCATTCATAACAGTGGAATTCATAGCCCAAGAAATGGG
TAAATGATATCCTCTCATTGGCATTACATGGTTGATGAAAAGTAAACGTGGCCACGGGTCCTTCA
TTTATGTGATGAATGACTTGATTACTATTTGATAGCAATTGACTTTTCATGAAGGAAAATGTACT
GGATACCATAAGATAAAATAAGATCATATTT
Found at i:50105658 original size:17 final size:17
Alignment explanation
Indices: 50105638--50105696 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
50105628 AGAAGATTTC
50105638 ATTTCAACATAAATTCA
1 ATTTCAACATAAATTCA
**** *
50105655 ATTTCAGTGCAAATTTA
1 ATTTCAACATAAATTCA
*
50105672 CATTTCAACTTAAATTCA
1 -ATTTCAACATAAATTCA
50105690 ATTTCAA
1 ATTTCAA
50105697 TAACAAATTT
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
17 19 0.61
18 12 0.39
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTTCAACATAAATTCA
Found at i:50107997 original size:19 final size:20
Alignment explanation
Indices: 50107960--50108003 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
50107950 TCTTAAATTG
50107960 TTTTATTTATAAGATTATTA
1 TTTTATTTATAAGATTATTA
50107980 TTTTATTTATAA-ATTATTA
1 TTTTATTTATAAGATTATTA
50107999 TTTTA
1 TTTTA
50108004 ATAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTATTTATAAGATTATTA
Found at i:50108007 original size:16 final size:17
Alignment explanation
Indices: 50107967--50108009 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
50107957 TTGTTTTATT
50107967 TATAAGATTATTATTTTA
1 TATAA-ATTATTATTTTA
50107985 TTTATAAATTATTATTTTA
1 --TATAAATTATTATTTTA
50108004 -ATAAAT
1 TATAAAT
50108010 AAATTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.26
19 12 0.52
20 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATAAATTATTATTTTA
Found at i:50108013 original size:20 final size:19
Alignment explanation
Indices: 50107968--50108014 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
50107958 TGTTTTATTT
**
50107968 ATAAGATTATTATTTTATTT
1 ATAA-ATTATTATTTTATAA
50107988 ATAAATTATTATTTTAATAA
1 ATAAATTATTATTTT-ATAA
50108008 ATAAATT
1 ATAAATT
50108015 TCATGTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
ATAAATTATTATTTTATAA
Found at i:50108102 original size:21 final size:21
Alignment explanation
Indices: 50108061--50108105 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
50108051 TTTATAAATA
* *
50108061 TTTTATAATATTTCATTTATT
1 TTTTATAAAATTTCATGTATT
50108082 TTTTATAAAATATT-ATGTATT
1 TTTTATAAAAT-TTCATGTATT
50108103 TTT
1 TTT
50108106 ATCAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTATAAAATTTCATGTATT
Found at i:50108367 original size:183 final size:186
Alignment explanation
Indices: 50108101--50108462 Score: 471
Period size: 183 Copynumber: 1.9 Consensus size: 186
50108091 ATATTATGTA
* * *
50108101 TTTTTATCAAAAAAATATCTTTTAAACATTTTTTTTACTTTTTTAAAGTTTTTTTTAAGAATCAG
1 TTTTTATCAAAAAAATAACTTCT-AACATTTTTTTTACTTTTTT--A-TTTTTTTTAAGAATCAA
* *
50108166 ATTGATAGAATATGTAAAGTTGCAAGCTAAATTATTTGAATTTTAAGATTTAGGACTGACTAATA
62 ATTGACAGAATATGTAAAGTTGCAAGCTAAATTATTTGAATTTTAAGATTTAGGACTAACTAATA
* * *
50108231 GAATTTATAAATGTTGAAGGGATAAATTTATTATTATGCCAATAAAAAAGGTAATTGTTC
127 GAATGTATAAATATTGAAGGGATAAATTTATTATTATACCAATAAAAAAGGTAATTGTTC
50108291 TTTTTATC-AAAAAATAACTTCT-A-ATTTTTTTTACTTTTTT-TTTATTTTTAAGAATCAAATT
1 TTTTTATCAAAAAAATAACTTCTAACATTTTTTTTACTTTTTTATTT-TTTTTAAGAATCAAATT
* * * * * * * *
50108352 GACAGAATGTGTAAAGTTGTAGGCTAATTTATTTGGATTTTTAGATTTAGGACTAATTGATAGAA
65 GACAGAATATGTAAAGTTGCAAGCTAAATTATTTGAATTTTAAGATTTAGGACTAACTAATAGAA
* * * *
50108417 TGTATAAATATTGGATGGTTAAATTTATTATTATACTAATAAAAAA
130 TGTATAAATATTGAAGGGATAAATTTATTATTATACCAATAAAAAA
50108463 AAGTCATTGT
Statistics
Matches: 151, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
182 3 0.02
183 110 0.73
186 17 0.11
187 1 0.01
189 12 0.08
190 8 0.05
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (186 bp):
TTTTTATCAAAAAAATAACTTCTAACATTTTTTTTACTTTTTTATTTTTTTTAAGAATCAAATTG
ACAGAATATGTAAAGTTGCAAGCTAAATTATTTGAATTTTAAGATTTAGGACTAACTAATAGAAT
GTATAAATATTGAAGGGATAAATTTATTATTATACCAATAAAAAAGGTAATTGTTC
Found at i:50108927 original size:12 final size:12
Alignment explanation
Indices: 50108910--50108943 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
50108900 TCGGCTCGCC
50108910 TATATTAATTTT
1 TATATTAATTTT
50108922 TATATT-ATTTT
1 TATATTAATTTT
50108933 TATA-TAATTTT
1 TATATTAATTTT
50108944 AAAAATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:50108965 original size:18 final size:18
Alignment explanation
Indices: 50108944--50108983 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
50108934 ATATAATTTT
*
50108944 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
50108962 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
50108980 AAAA
1 AAAA
50108984 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:50109926 original size:14 final size:14
Alignment explanation
Indices: 50109907--50109949 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
50109897 TAGAAATTTA
50109907 TTTTAATTATATAT
1 TTTTAATTATATAT
50109921 TTTTAATTATATAT
1 TTTTAATTATATAT
* *
50109935 TTTAAAATATATAT
1 TTTTAATTATATAT
50109949 T
1 T
50109950 CAGAATACGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAATTATATAT
Found at i:50110473 original size:23 final size:23
Alignment explanation
Indices: 50110420--50110465 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
50110410 TCATTATACC
*
50110420 TTTTAA-T-AATTTTTTTGAAAA
1 TTTTAATTAAATTTTCTTGAAAA
50110441 TTTTAATTAAATTTTCTT-AAAA
1 TTTTAATTAAATTTTCTTGAAAA
50110463 TTT
1 TTT
50110466 CTCATTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 8 0.36
23 8 0.36
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (23 bp):
TTTTAATTAAATTTTCTTGAAAA
Found at i:50120365 original size:19 final size:21
Alignment explanation
Indices: 50120343--50120384 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
50120333 AGAAATATAT
50120343 AAAATACATA-AAT-ATTTTA
1 AAAATACATATAATAATTTTA
*
50120362 AAAATATATATAATAATTTTA
1 AAAATACATATAATAATTTTA
50120383 AA
1 AA
50120385 TTTTATATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 3 0.15
21 8 0.40
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATACATATAATAATTTTA
Found at i:50120428 original size:5 final size:5
Alignment explanation
Indices: 50120420--50120454 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
50120410 TAAAAAACCC
50120420 TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA
1 TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA TCCCA
50120455 CTTCGTCCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
TCCCA
Found at i:50122309 original size:36 final size:37
Alignment explanation
Indices: 50122262--50122353 Score: 107
Period size: 37 Copynumber: 2.5 Consensus size: 37
50122252 GTCTCCAAAT
* *
50122262 TCACATTTCAATTCAATTTCACTTTTTCACTTTCAA-
1 TCACAATTCAATTCAATTTCACTTTTCCACTTTCAAG
* *
50122298 TCACAATTCAATTCAAAATTCACTTTTCCATTTTCAAG
1 TCACAATTCAATTC-AATTTCACTTTTCCACTTTCAAG
*
50122336 TCA-ATATTCATTTCAATT
1 TCACA-ATTCAATTCAATT
50122354 CCACACATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
36 13 0.28
37 23 0.49
38 11 0.23
ACGTcount: A:0.32, C:0.23, G:0.01, T:0.45
Consensus pattern (37 bp):
TCACAATTCAATTCAATTTCACTTTTCCACTTTCAAG
Found at i:50122354 original size:36 final size:35
Alignment explanation
Indices: 50122262--50122354 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 35
50122252 GTCTCCAAAT
* *
50122262 TCACATTTCAATTCAATTTCACTTTTTCACTTTCAA
1 TCACAATTCAATTCAA-TTCACTTTTCCACTTTCAA
*
50122298 TCACAATTCAATTCAAAATTCACTTTTCCATTTTCAA
1 TCACAATTCAATTC--AATTCACTTTTCCACTTTCAA
*
50122335 GTCA-ATATTCATTTCAATTC
1 -TCACA-ATTCAATTCAATTC
50122355 CACACATATA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
36 18 0.37
37 18 0.37
38 13 0.27
ACGTcount: A:0.31, C:0.24, G:0.01, T:0.44
Consensus pattern (35 bp):
TCACAATTCAATTCAATTCACTTTTCCACTTTCAA
Found at i:50123186 original size:19 final size:21
Alignment explanation
Indices: 50123141--50123190 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
50123131 TCTTTTACGT
*
50123141 ATTAGTTAATAATAATAATAC
1 ATTATTTAATAATAATAATAC
50123162 ATTATTATAATAAT-ATAATA-
1 ATTATT-TAATAATAATAATAC
50123182 A-TATTTAAT
1 ATTATTTAAT
50123191 TCATAAATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.15
19 4 0.15
20 1 0.04
21 11 0.41
22 7 0.26
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
ATTATTTAATAATAATAATAC
Found at i:50133802 original size:153 final size:153
Alignment explanation
Indices: 50133524--50133837 Score: 592
Period size: 153 Copynumber: 2.1 Consensus size: 153
50133514 TCATATTCAG
50133524 AATAATAGGTGAAGTCTAGGTGGATTCTTTCCTGGGTATTGTCTTTCCCATTGGTTGTTCTCTAT
1 AATAATAGGTGAAGTCTAGGTGGATTCTTTCCTGGGTATTGTCTTTCCCATTGGTTGTTCTCTAT
*
50133589 TATTTTCCCATTTCATTCTCTGTTGCGTTTGTAGCTAAATTAGATTAGTAAATTTAGATGAAAAA
66 TATTTTCCCATTTCACTCTCTGTTGCGTTTGTAGCTAAATTAGATTAGTAAATTTAGATGAAAAA
50133654 CCATCACTTCAATTTATCAGCTA
131 CCATCACTTCAATTTATCAGCTA
*
50133677 AATAATAGGTGAAGTCTAGGTGGATTCTTTCCTGGGTATTGTCTTTCTCATTGGTTGTTCTCTAT
1 AATAATAGGTGAAGTCTAGGTGGATTCTTTCCTGGGTATTGTCTTTCCCATTGGTTGTTCTCTAT
*
50133742 TATTTTCCCATTTCACTCTCTGTTGCGTTTGTAGTTAAATTAGATTAGTAAATTTAGATGAAAAA
66 TATTTTCCCATTTCACTCTCTGTTGCGTTTGTAGCTAAATTAGATTAGTAAATTTAGATGAAAAA
*
50133807 CCATCACTTCAATTTATCATCTA
131 CCATCACTTCAATTTATCAGCTA
50133830 AATAATAG
1 AATAATAG
50133838 AAAAATGGTA
Statistics
Matches: 157, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 157 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (153 bp):
AATAATAGGTGAAGTCTAGGTGGATTCTTTCCTGGGTATTGTCTTTCCCATTGGTTGTTCTCTAT
TATTTTCCCATTTCACTCTCTGTTGCGTTTGTAGCTAAATTAGATTAGTAAATTTAGATGAAAAA
CCATCACTTCAATTTATCAGCTA
Found at i:50138388 original size:38 final size:38
Alignment explanation
Indices: 50138342--50138574 Score: 227
Period size: 38 Copynumber: 6.1 Consensus size: 38
50138332 ATTCGAATTA
*
50138342 GGTGTTATTCAAGCTTAATGCCTAGCAGGCTTTGTGCC
1 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
* * *
50138380 GATGTTATTCAGGCTTAATGCCTAGAAGGCTTTATGCC
1 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
** * * * *
50138418 AATGTTACTCAAGCTTAGTGCCTAGCAGGCTTCGTGCC
1 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
* * * *
50138456 GGTGTTATTCAGGATTAGTGCCTAGTAGGCTTTTTGCC
1 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
* * * * *
50138494 GGTGTAATTTAGGCTTAGTTCCTAGCAGGC-TCG-GCAC
1 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGC-C
* * * *
50138531 TGGTGTTATTCAGGCTTAACGCCAAGCAGGCTTTTTGCT
1 -GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
50138570 GGTGT
1 GGTGT
50138575 ACCAAGTTGT
Statistics
Matches: 156, Mismatches: 35, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
36 2 0.01
37 2 0.01
38 149 0.96
39 1 0.01
40 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
Found at i:50138510 original size:76 final size:76
Alignment explanation
Indices: 50138350--50138575 Score: 258
Period size: 76 Copynumber: 3.0 Consensus size: 76
50138340 TAGGTGTTAT
* * * *
50138350 TCAAGCTTAATGCCTAGCAGGCTTTGTGCCGATGTTATTCAGGCTTAATGCCTAGAAGGCTTTAT
1 TCAAGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTTATTCAGGCTTAATGCCTAGAAGGCTTTTT
** *
50138415 GCCAATGTTAC
66 GCCGGTGTAAC
* * *
50138426 TCAAGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTTATTCAGGATTAGTGCCTAGTAGGCTTTTT
1 TCAAGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTTATTCAGGCTTAATGCCTAGAAGGCTTTTT
*
50138491 GCCGGTGTAAT
66 GCCGGTGTAAC
* * * * * *
50138502 TTAGGCTTAGTTCCTAGCAGGC-TCG-GCACTGGTGTTATTCAGGCTTAACGCCAAGCAGGCTTT
1 TCAAGCTTAGTGCCTAGCAGGCTTCGTGC-C-GGTGTTATTCAGGCTTAATGCCTAGAAGGCTTT
*
50138565 TTGCTGGTGTA
64 TTGCCGGTGTA
50138576 CCAAGTTGTT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
74 2 0.02
75 4 0.03
76 122 0.95
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (76 bp):
TCAAGCTTAGTGCCTAGCAGGCTTCGTGCCGGTGTTATTCAGGCTTAATGCCTAGAAGGCTTTTT
GCCGGTGTAAC
Found at i:50144911 original size:38 final size:38
Alignment explanation
Indices: 50144869--50145151 Score: 279
Period size: 38 Copynumber: 7.4 Consensus size: 38
50144859 GGTGTTATTT
50144869 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
1 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
*
50144907 AGGCTTTA-TGCC-GATGTTATTCAGACTTAGT-GCTTAGC
1 AGGC-TTAGTGCCAG-TGTTATTCAGGCTTAGTGGC-TAGC
* * * * *
50144945 AGGCTTTGTGCCGGTGCTATTTAGGCTTAGTGGTTAGC
1 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
*
50144983 AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
1 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
* * *
50145021 AGGCTTCGAG-CAGGTGTTATTCAAGCTTAG-GGCCTAGC
1 AGGCTTAGTGCCA-GTGTTATTCAGGCTTAGTGG-CTAGC
* * * *
50145059 AGGCTTCGTTCCGGTGTTATTCAGGCTTAGTGCCTAGC
1 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
* * * * * *
50145097 AAGCTCAGTGCCGGTGTTATTCAAGCTTAGCGCCTAGC
1 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
* * *
50145135 AGACTTTGTGTCAGTGT
1 AGGCTTAGTGCCAGTGT
50145152 ATCAAGTTTT
Statistics
Matches: 202, Mismatches: 33, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
37 9 0.04
38 186 0.92
39 7 0.03
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (38 bp):
AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGC
Found at i:50145073 original size:114 final size:114
Alignment explanation
Indices: 50144869--50145136 Score: 351
Period size: 114 Copynumber: 2.4 Consensus size: 114
50144859 GGTGTTATTT
* * *
50144869 AGGCTTAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAGGCTTTATGCCGATGTTATTCAGACT
1 AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAGGCTTGATGCAGATGTTATTCAGACT
* * * * **
50144934 TAGTGCTTAGCAGGCTTTGTGCCGGTGCTATTTAGGCTTAGTGGTTAGC
66 TAGGGCCTAGCAGGCTTCGTGCCGGTGCTATTCAGGCTTAGTGCCTAGC
*
50144983 AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAGGCTTCGA-GCAGGTGTTATTCA-AG
1 AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAGGCTT-GATGCAGATGTTATTCAGA-
* *
50145046 CTTAGGGCCTAGCAGGCTTCGTTCCGGTGTTATTCAGGCTTAGTGCCTAGC
64 CTTAGGGCCTAGCAGGCTTCGTGCCGGTGCTATTCAGGCTTAGTGCCTAGC
* * * * *
50145097 AAGCTCAGTGCCGGTGTTATTCAAGCTTAGCGCCTAGCAG
1 AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAG
50145137 ACTTTGTGTC
Statistics
Matches: 135, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
113 1 0.01
114 133 0.99
115 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (114 bp):
AGGCTCAGTGCCAGTGTTATTCAGGCTTAGTGGCTAGCAGGCTTGATGCAGATGTTATTCAGACT
TAGGGCCTAGCAGGCTTCGTGCCGGTGCTATTCAGGCTTAGTGCCTAGC
Found at i:50145849 original size:81 final size:80
Alignment explanation
Indices: 50145746--50145908 Score: 290
Period size: 81 Copynumber: 2.0 Consensus size: 80
50145736 CATGGGTTGT
*
50145746 CACACGGCCGTGTGTCACACACGATTTGTTCGCACAACTGTGTGTCTTTTAAGTTTCTAGTGCGG
1 CACACAGCCGTGTGTCACACACGATTTGTTCGCACAACTGTGTGTCTTTTAAGTTTCTAGTGC-G
* *
50145811 GTTTCACATGGTCTGG
65 GATTCACACGGTCTGG
50145827 CACACAGCCGTGTGTCACACACGATTTGTTCGCACAACTGTGTGTCTTTTAAGTTTCTAGTGCGG
1 CACACAGCCGTGTGTCACACACGATTTGTTCGCACAACTGTGTGTCTTTTAAGTTTCTAGTGCGG
50145892 ATTCACACGGTCTGG
66 ATTCACACGGTCTGG
50145907 CA
1 CA
50145909 ACGGCCTACG
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
80 17 0.22
81 62 0.78
ACGTcount: A:0.19, C:0.25, G:0.25, T:0.32
Consensus pattern (80 bp):
CACACAGCCGTGTGTCACACACGATTTGTTCGCACAACTGTGTGTCTTTTAAGTTTCTAGTGCGG
ATTCACACGGTCTGG
Found at i:50151250 original size:41 final size:41
Alignment explanation
Indices: 50151204--50151293 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 41
50151194 AAATACATCA
* *
50151204 TTTTCATTTGT-CATCCTTTT-TAGATAACATCCTTTTCAACC
1 TTTTCATTT-TACATCCTTTTCCA-ATAAAATCCTTTTCAACC
*
50151245 TTTTCATTTTATATCCTTTTCCAATAAAATCCTTTTCAACC
1 TTTTCATTTTACATCCTTTTCCAATAAAATCCTTTTCAACC
50151286 TTTTCATT
1 TTTTCATT
50151294 GATTCGGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 1 0.02
41 42 0.95
42 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (41 bp):
TTTTCATTTTACATCCTTTTCCAATAAAATCCTTTTCAACC
Found at i:50154786 original size:28 final size:27
Alignment explanation
Indices: 50154723--50154874 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
50154713 ATATTAAGTC
* * *
50154723 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
50154750 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
50154778 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
50154805 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
50154833 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
50154860 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50154875 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:50154807 original size:55 final size:55
Alignment explanation
Indices: 50154723--50154874 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
50154713 ATATTAAGTC
* * *
50154723 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
50154778 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
50154833 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
50154875 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:50159535 original size:25 final size:25
Alignment explanation
Indices: 50159474--50159536 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
50159464 TCAATAATTA
* *
50159474 GCTCACAACAGCTTCCGGTTACATG
1 GCTCACAAGAGCTTCCGGTTAAATG
* *
50159499 GCTCACATGAGCTTCCTGTTAAATG
1 GCTCACAAGAGCTTCCGGTTAAATG
50159524 GCTCGA-AAGAGCT
1 GCTC-ACAAGAGCT
50159537 ACCCTTTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (25 bp):
GCTCACAAGAGCTTCCGGTTAAATG
Found at i:50161450 original size:46 final size:46
Alignment explanation
Indices: 50161379--50161475 Score: 167
Period size: 46 Copynumber: 2.1 Consensus size: 46
50161369 CAATAAAGAA
* *
50161379 ATCTCAAGTATTGAAGAGTCAAGGTGATAGTGATAATTATTGAACT
1 ATCTCAAGTAATGAAGAATCAAGGTGATAGTGATAATTATTGAACT
*
50161425 ATCTCAAGTAATGAAGAATCGAGGTGATAGTGATAATTATTGAACT
1 ATCTCAAGTAATGAAGAATCAAGGTGATAGTGATAATTATTGAACT
50161471 ATCTC
1 ATCTC
50161476 TAAGACGAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.32
Consensus pattern (46 bp):
ATCTCAAGTAATGAAGAATCAAGGTGATAGTGATAATTATTGAACT
Found at i:50165940 original size:27 final size:27
Alignment explanation
Indices: 50165898--50165957 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
50165888 TACACCAAGC
50165898 AAAA-TTTTGACGATTTTACCACTAGT
1 AAAATTTTTGACGATTTTACCACTAGT
* * *
50165924 AAAATTTTTGATGATTTTGCCTCTAGT
1 AAAATTTTTGACGATTTTACCACTAGT
50165951 AAAATTT
1 AAAATTT
50165958 CAAAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 4 0.13
27 26 0.87
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (27 bp):
AAAATTTTTGACGATTTTACCACTAGT
Found at i:50167934 original size:23 final size:23
Alignment explanation
Indices: 50167904--50167956 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
50167894 TCGGGTTAAA
*
50167904 AAAT-AATTTAATTGAGTAAATT
1 AAATAAATTTAATTGACTAAATT
* * *
50167926 AATTAAATTTATTTTACTAAATT
1 AAATAAATTTAATTGACTAAATT
50167949 AAATAAAT
1 AAATAAAT
50167957 AATATTCTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
AAATAAATTTAATTGACTAAATT
Found at i:50176422 original size:42 final size:43
Alignment explanation
Indices: 50176333--50176431 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
50176323 TCCAAGACGT
* * * *
50176333 GGTCTTACATGTAATCAAATAATGATGACAATGTCCCAGACAG
1 GGTCTTACACGTAATCAAATAACGACGACAATGTCCCAGACAC
* * * *
50176376 GGTCTTACACGTAATCATAT-ACGACGCCAATGTCTCTGACAC
1 GGTCTTACACGTAATCAAATAACGACGACAATGTCCCAGACAC
50176418 GGTCTTACACGTAA
1 GGTCTTACACGTAA
50176432 ATCTCAAATC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATAACGACGACAATGTCCCAGACAC
Found at i:50178014 original size:19 final size:19
Alignment explanation
Indices: 50177971--50178011 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
50177961 TTTATCACAC
* *
50177971 TAATATTTTTTATAGTAAT
1 TAATATTTTTTAAAATAAT
50177990 TAATATTTTTTAAACATAAT
1 TAATATTTTTTAAA-ATAAT
50178010 TA
1 TA
50178012 TATAACTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (19 bp):
TAATATTTTTTAAAATAAT
Found at i:50180362 original size:4 final size:4
Alignment explanation
Indices: 50180355--50180412 Score: 107
Period size: 4 Copynumber: 14.5 Consensus size: 4
50180345 TGTACGTACG
50180355 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
*
50180403 TACA AACA TA
1 TACA TACA TA
50180413 AATTAATTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 52 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
TACA
Found at i:50180625 original size:30 final size:30
Alignment explanation
Indices: 50180589--50180647 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
50180579 TTATCATGTA
*
50180589 AGACTTTTTATTATTTCCAATTTAGTCCCT
1 AGACTTTTCATTATTTCCAATTTAGTCCCT
50180619 AGACTTTTCATTATTTCCAATTTAGTCCC
1 AGACTTTTCATTATTTCCAATTTAGTCCC
50180648 CTTTTGCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.47
Consensus pattern (30 bp):
AGACTTTTCATTATTTCCAATTTAGTCCCT
Found at i:50185847 original size:6 final size:6
Alignment explanation
Indices: 50185838--50185873 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
50185828 TCTATTTCTC
50185838 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
50185874 GGAGAAAGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (6 bp):
CATTTT
Found at i:50192335 original size:797 final size:795
Alignment explanation
Indices: 50190714--50192290 Score: 2423
Period size: 797 Copynumber: 2.0 Consensus size: 795
50190704 ACGTCGATAG
* *
50190714 TAGAAATCCTGCACAAAATATGTTAAATAGGTGCTATCTGCAAGCATACGATTCAGGTTGTAATA
1 TAGAAAACCTGCACAAAATATGTTAAATAGGTGCTATCTGCAAGCACACGATTCAGGTTGTAATA
* *
50190779 TAGTTACAACGAATTAGGTGAGTACTCTGAGGATCGTACCCAATGGAGGTGAGCACTAAATTAAT
66 TAGTTACAACGAAGTAGGTGAGTACTCTGAGGATCGTACCCAATGGAGGCGAGCACTAAATTAAT
*
50190844 CCTAACCTAAGCACAAGTAGAGCTAATTAGTATTTTAAAGAAATTATATTACAACTAAACATAAA
131 CCTAACCTAAGCACAAGTAGAGCTAATTAGTATTTTAAAGAAATTATATTACAACTAAACACAAA
* * * *
50190909 GAAAGGGCTTTTAATAACTAAGGAAATAAAATAATATAATTGGAAAAACTTTTGGGAAATTTTCT
196 GAAAGAGCTTTTAATAACTAAGGAAATAAAATAATATAAATGGAAAAACTTTTGAGAAATTTGCT
*
50190974 ATTGAAACTTAACCAGATCTGAACATGGGTGACTAGCTCGCTTTTGTTATCATAACTAACTATTG
261 ATTGAAACTTAACCAGATCTGAACATGGGTGACTAGCTCGCTTTGGTTATCATAACTAACTATTG
*
50191039 CTTCGAGTTCCCTGTTCAATCAACTAGTCATTGCCCTAGCAGGATCTCTCGATCTTTCACTAGAA
326 CTTCGAGTTCCCTGTTCAATCAACTAGTCATTGCCCTAGCAGGATCTCTCAATCTTTCACTAGAA
*
50191104 TAACGAGTCAGCAAGAACTAGTTATCTCTTGACCTTACAGCCTAGACTAGGTCGAGGTTAAGGTG
391 TAACGAGTCAGCAAGAACCAGTTATCTCTTGACCTTACAGCCTAGACTAGGTCGAGGTTAAGGTG
50191169 TTCACGGATTGACCATACCAATTTTAGGTTAATTCCCACCTAAATGACTTCCTAGGGTCGTCAAG
456 TTCACGGATTGACCATACCAATTTTAGGTTAATTCCCACCTAAATGACTTCCTAGGGTCGTCAAG
50191234 CCTAGATTTTAAATTCTTCCTTTCCCACAAGAGGATTAGTTCCTCATGGATCTCAAAAACATAAT
521 CCTAGATTTTAAATTCTTCCTTTCCCACAAGAGGATTAGTTCCTCATGGATCTCAAAAACATAAT
* *
50191299 AAACTTGATATAAAAGATGAAAATTAATAGCAAATCAAGAGACGAAGGTTTAAGAGAAGCTTAAG
586 AAACTTGATATAAAAGATGAAAATAAATAGCAAATCAAGAGACGAAGGTTTAAGAGAAGCCTAAG
* **
50191364 TTGTATTTAATTGAACCACAGAATTTACACAAAGTTGATCGAGTTCCAAAACCAAAAACCCTTCA
651 TTGTATTTAATTGAACCACAGAATTTACACAAAGTTGATCAAGTTCCAAAACCAAAAACCCAACA
* * *** * ** * ***** *** * *
50191429 TAATACATATTAGGGGTGACAACCTTACTATATTTAACTAGGGTGTGTCACTGACTGCCTCTGAA
716 TAATACAAACTA--GAAAACAACCTAACTATATAGAACAAGGGAAAAACAAAAACTGACTATGAA
* * * *
50191494 CGTACCAATGTCGATAG
779 CGTACAAATGTCAAAAA
* *
50191511 TAGAAATCCTGCACAAAATATGTTAAATAGGTGCTATCTGCAAGTACACGATTCAGGTTGTAATA
1 TAGAAAACCTGCACAAAATATGTTAAATAGGTGCTATCTGCAAGCACACGATTCAGGTTGTAATA
* *
50191576 TAGTTACAACGAAGTAGGTGAGTATTCTGAGGTTCGTACCCAATGGAGGCGAGCACTAAATTAAT
66 TAGTTACAACGAAGTAGGTGAGTACTCTGAGGATCGTACCCAATGGAGGCGAGCACTAAATTAAT
*
50191641 CCTAACCTAAGCACAAGTAGAGCTAATTAGTATTTTAAATAAATTATATTACAACTAAACACAAA
131 CCTAACCTAAGCACAAGTAGAGCTAATTAGTATTTTAAAGAAATTATATTACAACTAAACACAAA
50191706 GAAAGAGCTTTTAATAACTAAGGAAATAAAATAATATAAATGGAAAAACTTTTGAGAAATTTGCT
196 GAAAGAGCTTTTAATAACTAAGGAAATAAAATAATATAAATGGAAAAACTTTTGAGAAATTTGCT
* *
50191771 ATTGAAACTTAACCAGATTTGAGCATGGGTGACTAGCTCGCTTTGGTTATCATAACTAACTATTG
261 ATTGAAACTTAACCAGATCTGAACATGGGTGACTAGCTCGCTTTGGTTATCATAACTAACTATTG
*
50191836 CTTCGAGTTCCCTGTTCAATCAACTAGTCGTTGCCCTAGCAGGATCTCTCAATCTTTCACTAGAA
326 CTTCGAGTTCCCTGTTCAATCAACTAGTCATTGCCCTAGCAGGATCTCTCAATCTTTCACTAGAA
* *
50191901 TAATGAGTCAGCAAGAACCATTTATCTCTTGACCTTACAGCCTAGACTAGGTCGAGGTTAAGGTG
391 TAACGAGTCAGCAAGAACCAGTTATCTCTTGACCTTACAGCCTAGACTAGGTCGAGGTTAAGGTG
* * * *
50191966 TTCACGGATTGACCATACTAATTTTGGGTTAATTCTCACCTAAATGACTTCCTAGGGTGGTCAAG
456 TTCACGGATTGACCATACCAATTTTAGGTTAATTCCCACCTAAATGACTTCCTAGGGTCGTCAAG
* *
50192031 CCTAGGTTTTAAATTCTTCCTTTCCCATAAGA-G-TTAGTTCCTCATGGATCTCAAAAAACATAA
521 CCTAGATTTTAAATTCTTCCTTTCCCACAAGAGGATTAGTTCCTCATGGATCTC-AAAAACATAA
50192094 TAAACTTGATATAAAAGATGAAAATAAATAGCAAATCAAGAGACGAAGGTTTAAGAGAAGCCTAA
585 TAAACTTGATATAAAAGATGAAAATAAATAGCAAATCAAGAGACGAAGGTTTAAGAGAAGCCTAA
** *
50192159 GTTGTATTTAATT-AAGCCAC-GAAATTTACACAAAGTTGATCAAGTTCCACAAGTCAAATCACC
650 GTTGTATTTAATTGAA-CCACAG-AATTTACACAAAGTTGATCAAGTTCCA-AAACCAAA-AACC
* * * *
50192222 CAACA-AATGCAAAACTA-AAAATAACCTAAAGTCTA-AGAA-AAGGGAAAAACTAAAAACTGAA
711 CAACATAATAC-AAACTAGAAAACAACCT-AACTATATAGAACAAGGGAAAAAC-AAAAACTG--
50192283 ACTATGAA
771 ACTATGAA
50192291 GAAAATTATA
Statistics
Matches: 713, Mismatches: 57, Indels: 20
0.90 0.07 0.03
Matches are distributed among these distances:
794 5 0.01
795 35 0.05
796 121 0.17
797 542 0.76
798 10 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (795 bp):
TAGAAAACCTGCACAAAATATGTTAAATAGGTGCTATCTGCAAGCACACGATTCAGGTTGTAATA
TAGTTACAACGAAGTAGGTGAGTACTCTGAGGATCGTACCCAATGGAGGCGAGCACTAAATTAAT
CCTAACCTAAGCACAAGTAGAGCTAATTAGTATTTTAAAGAAATTATATTACAACTAAACACAAA
GAAAGAGCTTTTAATAACTAAGGAAATAAAATAATATAAATGGAAAAACTTTTGAGAAATTTGCT
ATTGAAACTTAACCAGATCTGAACATGGGTGACTAGCTCGCTTTGGTTATCATAACTAACTATTG
CTTCGAGTTCCCTGTTCAATCAACTAGTCATTGCCCTAGCAGGATCTCTCAATCTTTCACTAGAA
TAACGAGTCAGCAAGAACCAGTTATCTCTTGACCTTACAGCCTAGACTAGGTCGAGGTTAAGGTG
TTCACGGATTGACCATACCAATTTTAGGTTAATTCCCACCTAAATGACTTCCTAGGGTCGTCAAG
CCTAGATTTTAAATTCTTCCTTTCCCACAAGAGGATTAGTTCCTCATGGATCTCAAAAACATAAT
AAACTTGATATAAAAGATGAAAATAAATAGCAAATCAAGAGACGAAGGTTTAAGAGAAGCCTAAG
TTGTATTTAATTGAACCACAGAATTTACACAAAGTTGATCAAGTTCCAAAACCAAAAACCCAACA
TAATACAAACTAGAAAACAACCTAACTATATAGAACAAGGGAAAAACAAAAACTGACTATGAACG
TACAAATGTCAAAAA
Found at i:50197316 original size:22 final size:22
Alignment explanation
Indices: 50197291--50197335 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
50197281 AAAAGTAAAC
*
50197291 TAAAATACTTTAA-TAAAATAGA
1 TAAAAT-CTTGAATTAAAATAGA
*
50197313 TAAACTCTTGAATTAAAATAGA
1 TAAAATCTTGAATTAAAATAGA
50197335 T
1 T
50197336 TTCAAGAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
TAAAATCTTGAATTAAAATAGA
Found at i:50211152 original size:44 final size:44
Alignment explanation
Indices: 50211102--50211286 Score: 142
Period size: 44 Copynumber: 4.2 Consensus size: 44
50211092 AGGATAACAG
50211102 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
** * ** * *
50211146 ATCTTATCTTTCAAAG-A-TAGTGGGAAGCAGATTTAAG-CCACCGA
1 ATCTTATCTCCCTAAGCAGTAGT-GG-AGCAGATCAAAGACGA-CAA
* * * * * * * ** ** *
50211190 ACCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATAACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
*
50211234 ATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGACGACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
50211278 ATCTTATCT
1 ATCTTATCT
50211287 TTCCAGGATA
Statistics
Matches: 100, Mismatches: 35, Indels: 12
0.68 0.24 0.08
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 85 0.85
45 4 0.04
46 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.24
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAA
Found at i:50211331 original size:132 final size:132
Alignment explanation
Indices: 50211094--50211374 Score: 474
Period size: 132 Copynumber: 2.1 Consensus size: 132
50211084 GATCAGTAAG
*
50211094 GATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCA
1 GATAACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCA
* *
50211159 AAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTG
66 AAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAACAGAGTAGGTTG
50211224 AA
131 AA
*
50211226 GATAACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCC
1 GATAACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCA
* * *
50211291 AGGATAGTGGGAAGCAGATTTAAGCCACCGAGCCTTGTCTCCCTGAGCAGCAATAGAGTAGGTTG
66 AAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAACAGAGTAGGTTG
50211356 AA
131 AA
* *
50211358 AAT-ACAGGTCTTATCTC
1 GATAACAGATCTTATCTC
50211375 TGTGAAGTTG
Statistics
Matches: 140, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
131 13 0.09
132 127 0.91
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (132 bp):
GATAACAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCA
AAGATAGTGGGAAGCAGATTTAAGCCACCGAACCTTGTCTCCCTGAGCAGCAACAGAGTAGGTTG
AA
Found at i:50215346 original size:25 final size:25
Alignment explanation
Indices: 50215318--50215401 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 25
50215308 ACGAACTGTA
* *
50215318 AATCGATAAGCTCATACGAGATGAG
1 AATCAATAAGATCATACGAGATGAG
*
50215343 AATCAATAAGATCTTACGAGATGAG
1 AATCAATAAGATCATACGAGATGAG
* *
50215368 AATCAATAAGATCAAACAAGATGAG
1 AATCAATAAGATCATACGAGATGAG
*
50215393 AATCGATAA
1 AATCAATAA
50215402 TCCCTAATGA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (25 bp):
AATCAATAAGATCATACGAGATGAG
Found at i:50216681 original size:14 final size:15
Alignment explanation
Indices: 50216647--50216682 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
50216637 GCTTATAAAA
50216647 CAAAAATTACTATAT
1 CAAAAATTACTATAT
50216662 CAAAAATTACTATAT
1 CAAAAATTACTATAT
50216677 CAAAAA
1 CAAAAA
50216683 CCTTTTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (15 bp):
CAAAAATTACTATAT
Found at i:50230936 original size:45 final size:45
Alignment explanation
Indices: 50230870--50231046 Score: 191
Period size: 45 Copynumber: 4.0 Consensus size: 45
50230860 TACGCGTACT
* * * *
50230870 GGGTACCATTGATTATAAAGGTGGTTGTTGTGTGCAAATTCCACC
1 GGGTATCATTGATTATGAAGGTGGTTGTTATGTGCTAATTCCACC
* * * *
50230915 GGGTATCATTGATTATGAAGGTCGTTGCTGTGTGCTGATTCCACC
1 GGGTATCATTGATTATGAAGGTGGTTGTTATGTGCTAATTCCACC
* *
50230960 GGGTA-CTATTGATGATGAAGGTGGTTGTTATGTGCTGATTCCACC
1 GGGTATC-ATTGATTATGAAGGTGGTTGTTATGTGCTAATTCCACC
** *
50231005 AAGTATCATTGACTAT-AAGGGTGG-TGTTATGTGCTAA-TCCAC
1 GGGTATCATTGATTATGAA-GGTGGTTGTTATGTGCTAATTCCAC
50231047 TGTGTATCTG
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
43 5 0.04
44 15 0.13
45 93 0.82
46 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (45 bp):
GGGTATCATTGATTATGAAGGTGGTTGTTATGTGCTAATTCCACC
Found at i:50236139 original size:35 final size:35
Alignment explanation
Indices: 50236093--50236165 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 35
50236083 AAAAGATCTC
*
50236093 AGTAATTTCACTTTCAACTACACACTTTCTAATTA
1 AGTAAGTTCACTTTCAACTACACACTTTCTAATTA
*
50236128 AGTAAGTTCACTTTCAGCTACACACTTTCTAATTA
1 AGTAAGTTCACTTTCAACTACACACTTTCTAATTA
50236163 AGT
1 AGT
50236166 TATCTACACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.38
Consensus pattern (35 bp):
AGTAAGTTCACTTTCAACTACACACTTTCTAATTA
Found at i:50244271 original size:20 final size:21
Alignment explanation
Indices: 50244232--50244304 Score: 57
Period size: 20 Copynumber: 3.6 Consensus size: 21
50244222 CAAATCAAGA
*
50244232 GCACTAAA-GTGCAA-ACAGGG
1 GCAC-AAATGTGCAATATAGGG
50244252 GCACAAATGTGCAAT-TAGGG
1 GCACAAATGTGCAATATAGGG
* *
50244272 ACACCAAA-GTG-TATATAGGG
1 GCA-CAAATGTGCAATATAGGG
*
50244292 GCACAGATGTGCA
1 GCACAAATGTGCA
50244305 GTCAGGGACA
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
19 8 0.20
20 29 0.71
21 4 0.10
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (21 bp):
GCACAAATGTGCAATATAGGG
Found at i:50244281 original size:40 final size:40
Alignment explanation
Indices: 50244237--50244319 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
50244227 CAAGAGCACT
*
50244237 AAAGTGCAAACAGGGGCACAAATGTGCAATTAGGGACACC
1 AAAGTGCAAACAGGGGCACAAATGTGCAATCAGGGACACC
* * * * *
50244277 AAAGTGTATATAGGGGCACAGATGTGCAGTCAGGGACACC
1 AAAGTGCAAACAGGGGCACAAATGTGCAATCAGGGACACC
50244317 AAA
1 AAA
50244320 ATTTATCCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.29, T:0.14
Consensus pattern (40 bp):
AAAGTGCAAACAGGGGCACAAATGTGCAATCAGGGACACC
Found at i:50244334 original size:40 final size:39
Alignment explanation
Indices: 50244250--50244348 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 39
50244240 GTGCAAACAG
* * * * *
50244250 GGGCACAAATGTGCAATTAGGGACACCAAAGTGTATATAG
1 GGGCAC-AATGTGCAGTCAGGGACACCAAAATGTATACAA
* *
50244290 GGGCACAGATGTGCAGTCAGGGACACCAAAATTTATCCAA
1 GGGCACA-ATGTGCAGTCAGGGACACCAAAATGTATACAA
50244330 GGGCACAATTGTGCAGTCA
1 GGGCACAA-TGTGCAGTCA
50244349 ATTGTACATT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.04
40 48 0.96
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.19
Consensus pattern (39 bp):
GGGCACAATGTGCAGTCAGGGACACCAAAATGTATACAA
Found at i:50251363 original size:41 final size:41
Alignment explanation
Indices: 50251312--50251415 Score: 156
Period size: 41 Copynumber: 2.5 Consensus size: 41
50251302 CCGAGTGTAC
* *
50251312 ACAGGGGCACGAATATGCTATTTAGGGGTACCA-AAGTACAA
1 ACAGGGGCACGTATATGCAATTTAGGGGTA-CAGAAGTACAA
*
50251353 ACAGGGGCACGTATGTGCAATTTAGGGGTACAGAAGTACAA
1 ACAGGGGCACGTATATGCAATTTAGGGGTACAGAAGTACAA
*
50251394 ACAAGGGCACGTATATGCAATT
1 ACAGGGGCACGTATATGCAATT
50251416 CAGAGAATAA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 2 0.04
41 55 0.96
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (41 bp):
ACAGGGGCACGTATATGCAATTTAGGGGTACAGAAGTACAA
Found at i:50258840 original size:46 final size:46
Alignment explanation
Indices: 50258762--50259058 Score: 528
Period size: 46 Copynumber: 6.5 Consensus size: 46
50258752 TCACTTTGTC
**
50258762 ACCACTTATCAC-TTGTTC-C-TGATCAGATAAGTGTAGCTAAAACT
1 ACCACTTATCACTTTG-TCACTTGATCAGATAAGTGTAGCTAAGGCT
50258806 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
50258852 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
50258898 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
50258944 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
*
50258990 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
50259036 ACCACTTATCACTTTGTCACTTG
1 ACCACTTATCACTTTGTCACTTG
50259059 TCACTGATCA
Statistics
Matches: 245, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
44 14 0.06
45 4 0.02
46 227 0.93
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (46 bp):
ACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCT
Found at i:50258845 original size:108 final size:107
Alignment explanation
Indices: 50258657--50258871 Score: 367
Period size: 108 Copynumber: 2.0 Consensus size: 107
50258647 TACGTATGAT
**
50258657 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGCCACTTGA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAACTACCACTTATCACTTTGCCACTTGA
*
50258722 TCAGATAAGTGTAGCTAAAGTTACCACTTATCACTTTGTCAC
66 TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
* *
50258764 CACTTATCACTTGTTCCTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTTGTCACTTG
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCT-AAACTACCACTTATCACTTTGCCACTTG
*
50258829 ATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTGTCAC
65 ATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
50258872 TTGATCAGAT
Statistics
Matches: 101, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
107 35 0.35
108 66 0.65
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (107 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAACTACCACTTATCACTTTGCCACTTGA
TCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCAC
Found at i:50261326 original size:24 final size:25
Alignment explanation
Indices: 50261294--50261340 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50261284 AACAATTAAT
50261294 TAATTTTTT-TAATTTAAAAATATA
1 TAATTTTTTATAATTTAAAAATATA
**
50261318 TAATTTTTTATTTTTTAAAAATA
1 TAATTTTTTATAATTTAAAAATA
50261341 AATTATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
TAATTTTTTATAATTTAAAAATATA
Found at i:50261334 original size:25 final size:26
Alignment explanation
Indices: 50261306--50261364 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
50261296 ATTTTTTTAA
* * *
50261306 TTTAAAAATATATAAT-TTTTTATTT
1 TTTAAAAATAAATAATATTATAATTT
*
50261331 TTTAAAAATAAATTATATTATAATTT
1 TTTAAAAATAAATAATATTATAATTT
50261357 TTTAAAAA
1 TTTAAAAA
50261365 ATTTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
TTTAAAAATAAATAATATTATAATTT
Found at i:50266118 original size:28 final size:29
Alignment explanation
Indices: 50266070--50266127 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
50266060 GTTCATGTTC
50266070 TTTTTAGATGTGAAATAATTTTTATATTT
1 TTTTTAGATGTGAAATAATTTTTATATTT
* *
50266099 TTTTATAGAT-TGATAT-ATTTTTATGTTT
1 TTTT-TAGATGTGAAATAATTTTTATATTT
50266127 T
1 T
50266128 AAAATGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 12 0.46
29 9 0.35
30 5 0.19
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (29 bp):
TTTTTAGATGTGAAATAATTTTTATATTT
Found at i:50266828 original size:12 final size:12
Alignment explanation
Indices: 50266811--50266835 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50266801 GAGTGTTCAT
50266811 TGGTTAACCGAC
1 TGGTTAACCGAC
50266823 TGGTTAACCGAC
1 TGGTTAACCGAC
50266835 T
1 T
50266836 CGAAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TGGTTAACCGAC
Found at i:50267009 original size:9 final size:9
Alignment explanation
Indices: 50266995--50267043 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
50266985 TTTGGTTAAA
50266995 AATTAACCG
1 AATTAACCG
*
50267004 AATTAACCA
1 AATTAACCG
50267013 AATTAACCG
1 AATTAACCG
*
50267022 AATTACCCG
1 AATTAACCG
50267031 AATTAACCG
1 AATTAACCG
50267040 AATT
1 AATT
50267044 GAATCCCTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.45, C:0.22, G:0.08, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:50267094 original size:6 final size:6
Alignment explanation
Indices: 50267083--50267111 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
50267073 ACTTTTAGAC
50267083 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
50267112 AATTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Found at i:50267135 original size:20 final size:20
Alignment explanation
Indices: 50267083--50267124 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
50267073 ACTTTTAGAC
50267083 TTTAGTTTTAG--TTTTAGT
1 TTTAGTTTTAGAATTTTAGT
*
50267101 TTTAGTTTTAGAATTTTATT
1 TTTAGTTTTAGAATTTTAGT
50267121 TTTA
1 TTTA
50267125 TTTATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
20 10 0.48
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (20 bp):
TTTAGTTTTAGAATTTTAGT
Found at i:50267698 original size:19 final size:19
Alignment explanation
Indices: 50267667--50267705 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
50267657 TTAGGGTTTA
*
50267667 AAGTTTTTTTATATT-TTT
1 AAGTTTTTATATATTCTTT
50267685 AAGTTTTCTATATATTCTTT
1 AAGTTTT-TATATATTCTTT
50267705 A
1 A
50267706 GATTTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (19 bp):
AAGTTTTTATATATTCTTT
Found at i:50268268 original size:29 final size:30
Alignment explanation
Indices: 50268219--50268277 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
50268209 GTTCATGTTC
50268219 TTTTTAGATGTGAAATAATTTTTATATTTT
1 TTTTTAGATGTGAAATAATTTTTATATTTT
* *
50268249 TTTTATAGAT-TGATAT-ATTTTTATGTTTT
1 TTTT-TAGATGTGAAATAATTTTTATATTTT
50268278 AAAATGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
30 9 0.35
31 5 0.19
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (30 bp):
TTTTTAGATGTGAAATAATTTTTATATTTT
Found at i:50268498 original size:24 final size:23
Alignment explanation
Indices: 50268454--50268498 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
50268444 TTTATAAATT
*
50268454 TATTTTTTAAATTAGATTTTACA
1 TATTTTTTAAATTAGAATTTACA
* *
50268477 TATTTTTTTAATTTGAAATTTA
1 TATTTTTTAAATTAG-AATTTA
50268499 TAATAATATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 13 0.72
24 5 0.28
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
TATTTTTTAAATTAGAATTTACA
Found at i:50269258 original size:6 final size:6
Alignment explanation
Indices: 50269208--50269242 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
50269198 ACTTTTAGAC
50269208 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
50269243 AATTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Found at i:50269266 original size:20 final size:20
Alignment explanation
Indices: 50269208--50269255 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
50269198 ACTTTTAGAC
50269208 TTTAGTTTTAGTTTTAG--T
1 TTTAGTTTTAGTTTTAGAAT
50269226 TTTAGTTTTAGTTTTAGAAT
1 TTTAGTTTTAGTTTTAGAAT
*
50269246 TTTATTTTTA
1 TTTAGTTTTA
50269256 TTTATTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 17 0.63
20 10 0.37
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (20 bp):
TTTAGTTTTAGTTTTAGAAT
Found at i:50269922 original size:20 final size:19
Alignment explanation
Indices: 50269889--50269950 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
50269879 TTAGGATTTA
50269889 AAGTTTTT-TATATTTTTT
1 AAGTTTTTATATATTTTTT
*
50269907 AAGTTTTCTATATATTCTTT
1 AAGTTTT-TATATATTTTTT
*
50269927 AGATTTTTTATA-ATTTTTT
1 A-AGTTTTTATATATTTTTT
*
50269946 GAGTT
1 AAGTT
50269951 GTAAAGTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
18 10 0.28
19 7 0.19
20 14 0.39
21 5 0.14
ACGTcount: A:0.24, C:0.03, G:0.08, T:0.65
Consensus pattern (19 bp):
AAGTTTTTATATATTTTTT
Found at i:50275586 original size:19 final size:19
Alignment explanation
Indices: 50275552--50275598 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
50275542 ATCTCTTCTC
* *
50275552 TCATCT-CTGGTTCTTTGT
1 TCATCTGCTGCTTCTTTGA
50275570 TCATCTGCTGCTTCTTTGA
1 TCATCTGCTGCTTCTTTGA
*
50275589 TCCTCTGCTG
1 TCATCTGCTG
50275599 GTGCTGGTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.06, C:0.28, G:0.17, T:0.49
Consensus pattern (19 bp):
TCATCTGCTGCTTCTTTGA
Found at i:50275609 original size:25 final size:25
Alignment explanation
Indices: 50275575--50275697 Score: 141
Period size: 25 Copynumber: 5.2 Consensus size: 25
50275565 TTTGTTCATC
* *
50275575 TGCTGCTTCTTTGATCCTCTGCTGG
1 TGCTGGTTCTTTGTTCCTCTGCTGG
*
50275600 TGCTGGTTCTTTGTTCTTCTGCTGG
1 TGCTGGTTCTTTGTTCCTCTGCTGG
*
50275625 TGCTGGTTCTTTCTT-C-CT-C---
1 TGCTGGTTCTTTGTTCCTCTGCTGG
* *
50275644 TGCTGGTTATTTGTTCCTCTGCTTG
1 TGCTGGTTCTTTGTTCCTCTGCTGG
*
50275669 TACTGGTTCTTTGTTCCTCTGCTGG
1 TGCTGGTTCTTTGTTCCTCTGCTGG
50275694 TGCT
1 TGCT
50275698 TTGTTCCTCT
Statistics
Matches: 81, Mismatches: 11, Indels: 12
0.78 0.11 0.12
Matches are distributed among these distances:
19 13 0.16
20 1 0.01
21 2 0.02
22 2 0.02
23 2 0.02
25 61 0.75
ACGTcount: A:0.02, C:0.24, G:0.24, T:0.50
Consensus pattern (25 bp):
TGCTGGTTCTTTGTTCCTCTGCTGG
Found at i:50275624 original size:19 final size:19
Alignment explanation
Indices: 50275625--50275707 Score: 85
Period size: 19 Copynumber: 4.1 Consensus size: 19
50275615 CTTCTGCTGG
*
50275625 TGCTGGTTCTTTCTTCCTC
1 TGCTGGTTCTTTGTTCCTC
*
50275644 TGCTGGTTATTTGTTCCTCTGC
1 TGCTGGTTCTTTGTT-C-CT-C
50275666 TTGTACTGGTTCTTTGTTCCTC
1 -TG--CTGGTTCTTTGTTCCTC
*
50275688 TGCTGGTGCTTTGTTCCTC
1 TGCTGGTTCTTTGTTCCTC
50275707 T
1 T
50275708 TCTCCACCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
19 30 0.56
20 1 0.02
21 4 0.07
22 2 0.04
23 4 0.07
24 1 0.02
25 12 0.22
ACGTcount: A:0.02, C:0.25, G:0.20, T:0.52
Consensus pattern (19 bp):
TGCTGGTTCTTTGTTCCTC
Found at i:50275648 original size:44 final size:44
Alignment explanation
Indices: 50275600--50275707 Score: 162
Period size: 44 Copynumber: 2.5 Consensus size: 44
50275590 CCTCTGCTGG
* *
50275600 TGCTGGTTCTTTGTTCTTCTGCTGGTGCTGGTTCTTTCTTCCTC
1 TGCTGGTTCTTTGTTCCTCTGCTGGTACTGGTTCTTTCTTCCTC
* * *
50275644 TGCTGGTTATTTGTTCCTCTGCTTGTACTGGTTCTTTGTTCCTC
1 TGCTGGTTCTTTGTTCCTCTGCTGGTACTGGTTCTTTCTTCCTC
*
50275688 TGCTGGTGCTTTGTTCCTCT
1 TGCTGGTTCTTTGTTCCTCT
50275708 TCTCCACCAC
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.02, C:0.24, G:0.22, T:0.52
Consensus pattern (44 bp):
TGCTGGTTCTTTGTTCCTCTGCTGGTACTGGTTCTTTCTTCCTC
Found at i:50275662 original size:69 final size:69
Alignment explanation
Indices: 50275558--50275697 Score: 208
Period size: 69 Copynumber: 2.0 Consensus size: 69
50275548 TCTCTCATCT
* * * *
50275558 CTGGTTCTTTGTTCATCTGCTGCTTCTTTGATCCTCTGCTGGTGCTGGTTCTTTGTTCTTCTGCT
1 CTGGTTCTTTCTTCATCTGCTGCTTATTTGATCCTCTGCTGGTACTGGTTCTTTGTTCCTCTGCT
50275623 GGTG
66 GGTG
* * * *
50275627 CTGGTTCTTTCTTCCTCTGCTGGTTATTTGTTCCTCTGCTTGTACTGGTTCTTTGTTCCTCTGCT
1 CTGGTTCTTTCTTCATCTGCTGCTTATTTGATCCTCTGCTGGTACTGGTTCTTTGTTCCTCTGCT
50275692 GGTG
66 GGTG
50275696 CT
1 CT
50275698 TTGTTCCTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.03, C:0.24, G:0.23, T:0.50
Consensus pattern (69 bp):
CTGGTTCTTTCTTCATCTGCTGCTTATTTGATCCTCTGCTGGTACTGGTTCTTTGTTCCTCTGCT
GGTG
Found at i:50279770 original size:18 final size:18
Alignment explanation
Indices: 50279747--50279812 Score: 123
Period size: 18 Copynumber: 3.7 Consensus size: 18
50279737 AAAATATGAG
*
50279747 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTC
50279765 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
50279783 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
50279801 AAATGATGTTCA
1 AAATGATGTTCA
50279813 AATTGATGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:50280392 original size:72 final size:72
Alignment explanation
Indices: 50280238--50280410 Score: 215
Period size: 72 Copynumber: 2.4 Consensus size: 72
50280228 AACAACAATG
* * * * * *
50280238 CTAAACTAGTTTTATCAACAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTA
1 CTAAATTAGTTTTATCAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
50280303 TTTATGT
66 TTTATGT
* * *
50280310 GT-AATCTAGTTTTGTTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
50280374 ATTT-TTT
65 ATTTATGT
*
50280381 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAAAAGTTGTTTAT
50280411 ATGTGATTTT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
71 4 0.05
72 77 0.92
73 3 0.04
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:50281806 original size:3 final size:3
Alignment explanation
Indices: 50281798--50281846 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
50281788 GGTCGAGAAA
* * *
50281798 ATG ATG ATG ATG ATG ATG ATG ACG ACG ACG ATG ATG AT- AGTG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A-TG ATG
50281843 ATG A
1 ATG A
50281847 CGGTGAATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 1 0.02
3 40 0.95
4 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.33, T:0.27
Consensus pattern (3 bp):
ATG
Found at i:50285772 original size:25 final size:24
Alignment explanation
Indices: 50285743--50285792 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 24
50285733 ATTTTATTTT
* *
50285743 AATATTTATATTGATATTAAATAAA
1 AATATCTATATTAATATTAAA-AAA
50285768 AATATCTATATTAATATTAAAAAA
1 AATATCTATATTAATATTAAAAAA
50285792 A
1 A
50285793 TCAATTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
AATATCTATATTAATATTAAAAAA
Found at i:50285801 original size:20 final size:21
Alignment explanation
Indices: 50285756--50285802 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
50285746 ATTTATATTG
* *
50285756 ATATTAA-A-TAAAAATATCT
1 ATATTAATATTAAAAAAATCA
50285775 ATATTAATATTAAAAAAATCA
1 ATATTAATATTAAAAAAATCA
50285796 AT-TTAAT
1 ATATTAAT
50285803 TTTGGAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.29
20 6 0.25
21 11 0.46
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATTAATATTAAAAAAATCA
Found at i:50298345 original size:18 final size:18
Alignment explanation
Indices: 50298322--50298358 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50298312 GTAATGGATA
50298322 CTCAACTTTCTTTACTTT
1 CTCAACTTTCTTTACTTT
50298340 CTCAACTTTCTTTACTTT
1 CTCAACTTTCTTTACTTT
50298358 C
1 C
50298359 CCGTGTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.30, G:0.00, T:0.54
Consensus pattern (18 bp):
CTCAACTTTCTTTACTTT
Found at i:50301313 original size:19 final size:21
Alignment explanation
Indices: 50301270--50301322 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
50301260 AAGTTATTAA
50301270 TTTTTAAAATTA-TAAATATAG
1 TTTTT-AAATTATTAAATATAG
50301291 -TTTTAAATTATTAAAT-T-G
1 TTTTTAAATTATTAAATATAG
*
50301309 TTTTTCAATTATTA
1 TTTTTAAATTATTA
50301323 TCATTATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 1 0.03
19 19 0.66
20 9 0.31
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTTTAAATTATTAAATATAG
Found at i:50318469 original size:433 final size:433
Alignment explanation
Indices: 50317652--50318529 Score: 1614
Period size: 433 Copynumber: 2.0 Consensus size: 433
50317642 TTTTGTGTTG
*
50317652 TATTTC-AATTTGGTCTTTTGAATTTCTTTAATTTTAAGCAATACAATTTGTCATTGATTTCATC
1 TATTTCAAATTCGGTCTTTTGAATTTCTTTAATTTTAAGCAATACAATTTGTCATTGATTTCATC
*
50317716 TGGGCCCAGATTAGATGCCGCGTTTTAGAGGGGCGGGGATTATTTCCCGCTTGGTCCCCCAAGTA
66 TGGGCCCAGATTAGATGCCGCGTTTTAGAGGGGCGGGGAATATTTCCCGCTTGGTCCCCCAAGTA
50317781 ATCCGCGCATTACATTCGACCCATTTACTTTATTTTATTTTCATTTGGTTCTTTTAATTCTGTTT
131 ATCCGCGCATTACATTCGACCCATTTACTTTATTTTATTTTCATTTGGTTCTTTTAATTCTGTTT
*
50317846 TTAATTTAATTTAATCCCTTTTGTATTTTTTATCAATTAATTTAGTAATAATATCATTATTATTT
196 TTAATTTAATTTAATACCTTTTGTATTTTTTATCAATTAATTTAGTAATAATATCATTATTATTT
50317911 ATTAATTCTAGTATCATTCGTATTATCATTAAACTTTTCATTTCATATACATTACTTATTTAGAT
261 ATTAATTCTAGTATCATTCGTATTATCATTAAACTTTTCATTTCATATACATTACTTATTTAGAT
*
50317976 TAATGTATGTATATTATTTGGTATATTACACATATATTTTTATTTACTTCGAAATTCATTTTAAT
326 TAATGAATGTATATTATTTGGTATATTACACATATATTTTTATTTACTTCGAAATTCATTTTAAT
*
50318041 ATTATAATTTCACATAGTATTTCTTTTTATCTTCCTTTACATC
391 ATTATAATTTCACATAGTATTTCTTTTTATCTTCCTTTAAATC
* *
50318084 TATTTCAAATTCGGTCTTTTGAATTTCTTTAATTTTGAGCAATACAGTTTGTCATTGATTTCATC
1 TATTTCAAATTCGGTCTTTTGAATTTCTTTAATTTTAAGCAATACAATTTGTCATTGATTTCATC
* * *
50318149 TGGGCCTAGATTAGATGCTGCGTTTTGGAGGGGCGGGGAATATTTCCCGCTTGGTCCCCCAAGTA
66 TGGGCCCAGATTAGATGCCGCGTTTTAGAGGGGCGGGGAATATTTCCCGCTTGGTCCCCCAAGTA
* * *
50318214 ATCCGCGCATTACATTTGGCCCCTTTACTTTATTTTATTTTCATTTGGTTCTTTTAATTCTGTTT
131 ATCCGCGCATTACATTCGACCCATTTACTTTATTTTATTTTCATTTGGTTCTTTTAATTCTGTTT
50318279 TTAATTTAATTTAATACCTTTTGTATTTTTTATCAATTAATTTAGTAATAATATCATTATTATTT
196 TTAATTTAATTTAATACCTTTTGTATTTTTTATCAATTAATTTAGTAATAATATCATTATTATTT
*
50318344 ATTAATTCTAGTATCATTCGTATTATCATTAAACTTTTCATTTCATATACGTTACTTATTTAGAT
261 ATTAATTCTAGTATCATTCGTATTATCATTAAACTTTTCATTTCATATACATTACTTATTTAGAT
50318409 TAATGAATGTATATTATTTGGTATATTACACATATATTTTTATTTACTTCGAAATTCATTTTAAT
326 TAATGAATGTATATTATTTGGTATATTACACATATATTTTTATTTACTTCGAAATTCATTTTAAT
*
50318474 ATTATAATTTCATATAGTATTTCTTTTTATCTTCCTTTAAATC
391 ATTATAATTTCACATAGTATTTCTTTTTATCTTCCTTTAAATC
50318517 TATTTCAAATTCG
1 TATTTCAAATTCG
50318530 TCTGTATATA
Statistics
Matches: 430, Mismatches: 15, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
432 6 0.01
433 424 0.99
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (433 bp):
TATTTCAAATTCGGTCTTTTGAATTTCTTTAATTTTAAGCAATACAATTTGTCATTGATTTCATC
TGGGCCCAGATTAGATGCCGCGTTTTAGAGGGGCGGGGAATATTTCCCGCTTGGTCCCCCAAGTA
ATCCGCGCATTACATTCGACCCATTTACTTTATTTTATTTTCATTTGGTTCTTTTAATTCTGTTT
TTAATTTAATTTAATACCTTTTGTATTTTTTATCAATTAATTTAGTAATAATATCATTATTATTT
ATTAATTCTAGTATCATTCGTATTATCATTAAACTTTTCATTTCATATACATTACTTATTTAGAT
TAATGAATGTATATTATTTGGTATATTACACATATATTTTTATTTACTTCGAAATTCATTTTAAT
ATTATAATTTCACATAGTATTTCTTTTTATCTTCCTTTAAATC
Found at i:50324787 original size:46 final size:46
Alignment explanation
Indices: 50324716--50324928 Score: 385
Period size: 46 Copynumber: 4.7 Consensus size: 46
50324706 GGCTGTTACA
50324716 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
* * *
50324762 CTATCACTTATCACTTTGTTACTTGATCAGATAAGTGTAGTTAAAG
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
50324808 CTACCACTTATCACTTTGTCACTTGATCAGATAA--GTAGCTAAAG
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
50324852 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
50324898 CTACCACTTATCACTTTGTCACTTGATCAGA
1 CTACCACTTATCACTTTGTCACTTGATCAGA
50324929 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
44 43 0.27
46 116 0.73
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (46 bp):
CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAG
Found at i:50324879 original size:90 final size:91
Alignment explanation
Indices: 50324716--50324928 Score: 383
Period size: 90 Copynumber: 2.3 Consensus size: 91
50324706 GGCTGTTACA
*
50324716 CTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGT
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAG-GTAGCTAAAGCTACCACTTATCACTTTGT
* *
50324781 TACTTGATCAGATAAGTGTAGTTAAAG
65 CACTTGATCAGATAAGTGTAGCTAAAG
50324808 CTACCACTTATCACTTTGTCACTTGATCAGATAA-GTAGCTAAAGCTACCACTTATCACTTTGTC
1 CTACCACTTATCACTTTGTCACTTGATCAGATAAGGTAGCTAAAGCTACCACTTATCACTTTGTC
50324872 ACTTGATCAGATAAGTGTAGCTAAAG
66 ACTTGATCAGATAAGTGTAGCTAAAG
50324898 CTACCACTTATCACTTTGTCACTTGATCAGA
1 CTACCACTTATCACTTTGTCACTTGATCAGA
50324929 AGTACTCAAA
Statistics
Matches: 118, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
90 84 0.71
92 34 0.29
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (91 bp):
CTACCACTTATCACTTTGTCACTTGATCAGATAAGGTAGCTAAAGCTACCACTTATCACTTTGTC
ACTTGATCAGATAAGTGTAGCTAAAG
Found at i:50336299 original size:44 final size:44
Alignment explanation
Indices: 50336249--50336590 Score: 429
Period size: 44 Copynumber: 7.8 Consensus size: 44
50336239 TGAAATCACA
* * *
50336249 AAGTCCTATCTCCTTGACCAGCAGTGAAATAGGTTGAAGATTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
* *
50336293 AAGTCCTATCTCCCTGACCAGCAGTGGAATATGTTGAAGATTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
50336337 AAG-CCTTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
1 AAGTCC-TATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
* * * *
50336381 AAATCCTAGCTCCCTGACCAGTAGTGAAATAGGTGGAAGATTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
* * * *
50336425 AAATCCTAGCTCCCTGACCAGCAGTGGAATAGGCGAAAGATTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
** * * * *
50336469 AAAACCTAGCTCCCTGAACAGCAGTGGAATAGGCGAAAGATTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
* * *
50336513 AAGTCCTAACTCCCTGACTAGCAGTGGAATAGGTGGAAGACTGT
1 AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
*
50336557 -AGATCCTATCTCCCTGGA-CAGCAGTAGAATAGGT
1 AAG-TCCTATCTCCCT-GACCAGCAGTGGAATAGGT
50336591 CAAAAATTAC
Statistics
Matches: 268, Mismatches: 26, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
43 4 0.01
44 260 0.97
45 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
AAGTCCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGT
Found at i:50338960 original size:11 final size:13
Alignment explanation
Indices: 50338936--50338967 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50338926 TAGTTTATTA
50338936 ATATTTTAATATG
1 ATATTTTAATATG
50338949 AT-TTTTAA-ATG
1 ATATTTTAATATG
50338960 ATATTTTA
1 ATATTTTA
50338968 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (13 bp):
ATATTTTAATATG
Found at i:50341967 original size:20 final size:20
Alignment explanation
Indices: 50341939--50341992 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
50341929 AATATTATGA
* *
50341939 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
50341959 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
50341979 TCCATTTCATTTAC
1 ACCATTCCATTTAC
50341993 CTAGCATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.46
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:50342734 original size:40 final size:40
Alignment explanation
Indices: 50342670--50342833 Score: 265
Period size: 40 Copynumber: 4.1 Consensus size: 40
50342660 CAAAACACAC
* * * *
50342670 CAGATGCTCATAAGAGCTAGTCCAACCAAAACACACCAGA
1 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
*
50342710 CAAAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
1 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
*
50342750 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACTAGA
1 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
*
50342790 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGG
1 CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
50342830 CAGA
1 CAGA
50342834 TAGTATAACA
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 115 1.00
ACGTcount: A:0.43, C:0.29, G:0.17, T:0.11
Consensus pattern (40 bp):
CAGAAGCTCATAGGAGCTAATCCAACCGAAACACACCAGA
Found at i:50343065 original size:22 final size:23
Alignment explanation
Indices: 50343012--50343067 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
50343002 CCCGTTTTTA
* * *
50343012 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
50343035 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
50343057 ATTAAAATTAA
1 ATTAAAATTAA
50343068 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:50343080 original size:16 final size:16
Alignment explanation
Indices: 50343043--50343082 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
50343033 TTAATAAAAT
* *
50343043 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
50343059 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
50343075 TAAAATTA
1 TAAAATTA
50343083 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:50343188 original size:9 final size:9
Alignment explanation
Indices: 50343155--50343182 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
50343145 TTTATCAAAT
50343155 TATTAATTG
1 TATTAATTG
50343164 TATTAATTG
1 TATTAATTG
50343173 TATTAATTG
1 TATTAATTG
50343182 T
1 T
50343183 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:50343193 original size:68 final size:68
Alignment explanation
Indices: 50343071--50343280 Score: 370
Period size: 68 Copynumber: 3.1 Consensus size: 68
50343061 AAATTAATTG
* *
50343071 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTAATAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
50343134 TGA
66 TGA
*
50343137 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAGCATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
50343202 TGA
66 TGA
*
50343205 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
50343270 TGA
66 TGA
50343273 TTAGTAAA
1 TTAGTAAA
50343281 ACAAACTTGA
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
66 26 0.19
68 111 0.81
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:50343235 original size:9 final size:9
Alignment explanation
Indices: 50343223--50343250 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
50343213 TTTATCAAAT
50343223 TATTAATTG
1 TATTAATTG
50343232 TATTAATTG
1 TATTAATTG
50343241 TATTAATTG
1 TATTAATTG
50343250 T
1 T
50343251 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:50343376 original size:24 final size:23
Alignment explanation
Indices: 50343347--50343391 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
50343337 AAATAAACTT
*
50343347 AAAATAAAAAATTATTATATTTTA
1 AAAATAAAAAAATA-TATATTTTA
50343371 AAAATAAAAAAATATATATTT
1 AAAATAAAAAAATATATATTT
50343392 AATATTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAATAAAAAAATATATATTTTA
Found at i:50344224 original size:25 final size:25
Alignment explanation
Indices: 50344196--50344257 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
50344186 AAATAAATTA
* *
50344196 CCACAAAGGCTTTACAGGTGACAAG
1 CCACAAAGGCTTCACAAGTGACAAG
* * **
50344221 CCACAAAAGCTTCCCAAGTGACTCG
1 CCACAAAGGCTTCACAAGTGACAAG
50344246 CCACAAAGGCTT
1 CCACAAAGGCTT
50344258 GGTTTGGTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.34, C:0.31, G:0.19, T:0.16
Consensus pattern (25 bp):
CCACAAAGGCTTCACAAGTGACAAG
Found at i:50347235 original size:11 final size:11
Alignment explanation
Indices: 50347221--50347259 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
50347211 TTGATTTGAT
50347221 TTTTAATTA-TA
1 TTTT-ATTATTA
50347232 TTTTATTATTA
1 TTTTATTATTA
50347243 TTTTATTATTA
1 TTTTATTATTA
50347254 TTTTAT
1 TTTTAT
50347260 CTAGTATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:50355089 original size:20 final size:20
Alignment explanation
Indices: 50355047--50355090 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
50355037 TAGTTAAGTT
* * *
50355047 GTAAAACAGTAGAAGCAATA
1 GTAAAACAATAGAAACAACA
*
50355067 GTAAAACAATGGAAACAACA
1 GTAAAACAATAGAAACAACA
50355087 GTAA
1 GTAA
50355091 TATTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.57, C:0.11, G:0.18, T:0.14
Consensus pattern (20 bp):
GTAAAACAATAGAAACAACA
Found at i:50367695 original size:13 final size:13
Alignment explanation
Indices: 50367677--50367701 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50367667 TTTTGACACT
50367677 CTCGAAAAATTAC
1 CTCGAAAAATTAC
50367690 CTCGAAAAATTA
1 CTCGAAAAATTA
50367702 GGTTGTTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (13 bp):
CTCGAAAAATTAC
Found at i:50370580 original size:21 final size:21
Alignment explanation
Indices: 50370554--50370606 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
50370544 TTACTATTAG
50370554 TCTCGAGACATGTCGAGCATA
1 TCTCGAGACATGTCGAGCATA
50370575 TCTCGAGACATGTCGAGCATA
1 TCTCGAGACATGTCGAGCATA
50370596 TCTCGAGACAT
1 TCTCGAGACAT
50370607 AGACATCTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (21 bp):
TCTCGAGACATGTCGAGCATA
Found at i:50371097 original size:41 final size:41
Alignment explanation
Indices: 50370974--50371097 Score: 149
Period size: 41 Copynumber: 3.0 Consensus size: 41
50370964 TGACCTTTCA
* * ** *
50370974 GGGCTTTAGCGGCGTTTTTGAAAAAGCGTCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTTAAGAAGCACCGCTAATGCTCG
* * * * *
50371015 AGACTTTAGCGGCATTTTTTAAGTAGTACCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTTTTTAAGAAGCACCGCTAATGCTCG
*
50371056 GGGCTTTAGCGGCGTTTTTTAAGAAGCACCGCTAATACTCG
1 GGGCTTTAGCGGCGTTTTTTAAGAAGCACCGCTAATGCTCG
50371097 G
1 G
50371098 CGTTTTTGAA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTTAAGAAGCACCGCTAATGCTCG
Found at i:50374560 original size:43 final size:43
Alignment explanation
Indices: 50374513--50374636 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
50374503 GAAGCGTCGC
** *
50374513 TAAAGGTCTTGAGCTATAGTAGCGTTTGTGGGAAAAG-GTCTGT
1 TAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGAAAAGTGT-TGA
* *
50374556 TAAAGGTCTTGAGATATAGCGGCATTTGTGGGAAAAGTGTTGA
1 TAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGAAAAGTGTTGA
* *
50374599 TAAAGGTCTTGATCTATAGCGGCGTTTGT-GCAAAAGTG
1 TAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGAAAAGTG
50374637 CCGCTAAAGG
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
42 8 0.11
43 61 0.86
44 2 0.03
ACGTcount: A:0.27, C:0.10, G:0.31, T:0.31
Consensus pattern (43 bp):
TAAAGGTCTTGAGCTATAGCGGCGTTTGTGGGAAAAGTGTTGA
Found at i:50374679 original size:85 final size:86
Alignment explanation
Indices: 50374513--50374701 Score: 202
Period size: 85 Copynumber: 2.2 Consensus size: 86
50374503 GAAGCGTCGC
* * * * * * * *
50374513 TAAAGGTCTTGAGCTATAGTAGCGTTTGTGGGAAAAGGTCTGTTAAAGGTCTTGAGATATAGCGG
1 TAAAGGTCTTGATCTATAGCAGCGTTTGTGGCAAAAGGTCCGCTAAAGGTCCTGAGATATAACGA
* * **
50374578 CATTTGTGGGAAAAGTGTTGA
66 CATTTGTAGAAAAAGTGCCGA
* **
50374599 TAAAGGTCTTGATCTATAGCGGCGTTTGT-GCAAAA-GTGCCGCTAAAGGTCCTGATCTATAACG
1 TAAAGGTCTTGATCTATAGCAGCGTTTGTGGCAAAAGGT-CCGCTAAAGGTCCTGAGATATAACG
*
50374662 ACATTTGTAGAAAAAGTGCCGC
65 ACATTTGTAGAAAAAGTGCCGA
*
50374684 TAAAGGTCCTGATCTATA
1 TAAAGGTCTTGATCTATA
50374702 ATGGCGCTTG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
84 2 0.02
85 57 0.67
86 26 0.31
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (86 bp):
TAAAGGTCTTGATCTATAGCAGCGTTTGTGGCAAAAGGTCCGCTAAAGGTCCTGAGATATAACGA
CATTTGTAGAAAAAGTGCCGA
Found at i:50374690 original size:43 final size:42
Alignment explanation
Indices: 50374599--50374702 Score: 154
Period size: 43 Copynumber: 2.5 Consensus size: 42
50374589 AAAGTGTTGA
* * * * *
50374599 TAAAGGTCTTGATCTATAGCGGCGTTTGTGCAAAAGTGCCGC
1 TAAAGGTCCTGATCTATAACGACATTTGTGAAAAAGTGCCGC
50374641 TAAAGGTCCTGATCTATAACGACATTTGTAGAAAAAGTGCCGC
1 TAAAGGTCCTGATCTATAACGACATTTGT-GAAAAAGTGCCGC
50374684 TAAAGGTCCTGATCTATAA
1 TAAAGGTCCTGATCTATAA
50374703 TGGCGCTTGG
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 25 0.45
43 31 0.55
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
TAAAGGTCCTGATCTATAACGACATTTGTGAAAAAGTGCCGC
Found at i:50375121 original size:9 final size:9
Alignment explanation
Indices: 50375107--50375137 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
50375097 GTTAAACGAA
50375107 TCGAGTTAT
1 TCGAGTTAT
*
50375116 TCGAGTTAA
1 TCGAGTTAT
50375125 TCGAGTTAT
1 TCGAGTTAT
50375134 TCGA
1 TCGA
50375138 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:50375630 original size:20 final size:20
Alignment explanation
Indices: 50375591--50375630 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50375581 TTATTCTCCA
*
50375591 AAACTTTTTATTTTCCCCCT
1 AAACTTTTTATTTTCACCCT
50375611 AAAC-TTTTATTTCTCACCCT
1 AAACTTTTTATTT-TCACCCT
50375631 TTACCCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
AAACTTTTTATTTTCACCCT
Found at i:50375751 original size:9 final size:9
Alignment explanation
Indices: 50375737--50375775 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
50375727 AATTTCACAT
50375737 TTTATATTA
1 TTTATATTA
50375746 TTTATATTA
1 TTTATATTA
50375755 TTTATATTA
1 TTTATATTA
50375764 TTTA-ATTA
1 TTTATATTA
50375772 TTTA
1 TTTA
50375776 GTCATATTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTATATTA
Found at i:50375760 original size:18 final size:17
Alignment explanation
Indices: 50375737--50375797 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 17
50375727 AATTTCACAT
50375737 TTTATATTATTTATATTA
1 TTTATATTATTTA-ATTA
50375755 TTTATATTATTTAATTA
1 TTTATATTATTTAATTA
*
50375772 TTTAGTCA-TATTGAA-TA
1 TTTA-T-ATTATTTAATTA
50375789 TTTATATTA
1 TTTATATTA
50375798 AAATTGAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
15 1 0.03
16 3 0.08
17 14 0.36
18 20 0.51
19 1 0.03
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTATATTATTTAATTA
Found at i:50378093 original size:22 final size:23
Alignment explanation
Indices: 50378056--50378102 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
50378046 TATTTTTTTG
*
50378056 TTAATTTGAAATTTTAAGTATTTA
1 TTAATTT-AAATTTTAAGAATTTA
50378080 TTAATTT-AATTTTAAGAATTTA
1 TTAATTTAAATTTTAAGAATTTA
50378102 T
1 T
50378103 CAAATAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.68
24 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.55
Consensus pattern (23 bp):
TTAATTTAAATTTTAAGAATTTA
Found at i:50379628 original size:17 final size:17
Alignment explanation
Indices: 50379602--50379634 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
50379592 TAACTTTTTT
50379602 TTTCAG-TTTTACTTTA
1 TTTCAGTTTTTACTTTA
50379618 TTTCTAGTTTTTACTTT
1 TTTC-AGTTTTTACTTT
50379635 TAAAAGTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 2 0.13
18 9 0.60
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTCAGTTTTTACTTTA
Found at i:50384477 original size:18 final size:18
Alignment explanation
Indices: 50384454--50384496 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
50384444 TGACAGGTGC
*
50384454 GTATCCTAACCCTTATAT
1 GTATCCTAACCATTATAT
50384472 GTATCCTAACCATTATAT
1 GTATCCTAACCATTATAT
*
50384490 GTTTCCT
1 GTATCCT
50384497 TTATTCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCATTATAT
Found at i:50385670 original size:20 final size:20
Alignment explanation
Indices: 50385645--50385686 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
50385635 GGTTATCGGT
50385645 AAATGACGCATTCCTTTTAA
1 AAATGACGCATTCCTTTTAA
*
50385665 AAATGACGCGTTCCTTTTAA
1 AAATGACGCATTCCTTTTAA
50385685 AA
1 AA
50385687 TAGAATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (20 bp):
AAATGACGCATTCCTTTTAA
Found at i:50388337 original size:125 final size:125
Alignment explanation
Indices: 50388035--50388559 Score: 662
Period size: 124 Copynumber: 4.2 Consensus size: 125
50388025 TACGGCCAAG
* * * * * *
50388035 TAGGAACTATTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTCTTCAGTAATTTTGCTGACAGTGC
*** * * * * *
50388100 ATCCTGCTTGAAGTGCTTTTGACACTGTTTTTTTTTTCAAAATTGTCTTCTTATAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACAC----TATTTTTTCAGAACTGTCTTCTCAAAATTA-TTTTT
* * * *
50388165 TAGGAACTACTGTAGAAAAAGAACGTCCATGTGGGAGCTTTCTTCAGTAATTTTGCTGATAGTGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTCTTCAGTAATTTTGCTGACAGTGC
50388230 ATCCTGCTT-ATAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTT
66 ATCCTGCTTGA-AGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTT
* * *
50388290 TAGGAACTACTGTAGAAAAAGAGCTTCCACGTGAAAGCTTTCTTCAGTAATTTTGCTGATAGTGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTCTTCAGTAATTTTGCTGACAGTGC
** *
50388355 ATATTGCTTGAAGCATTTTTGACACTA-TTTTTCAGAACTGTATTCTCAAAATTATTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTT
* *
50388414 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTCTTCAGTAATTTTGCTGACAGTGC
* * *
50388479 ATCCTGCTTGAAGCGTTTTTGACATTATCTTTTCAGAA-TCGTCTTCTCAAAATTAATTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACT-GTCTTCTCAAAATT-ATTTTT
* *
50388540 CT-GAAACTACTGCAGAAAAA
1 -TAGGAACTACTGTAGAAAAA
50388560 AACAAAATCC
Statistics
Matches: 354, Mismatches: 35, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
124 115 0.32
125 110 0.31
126 48 0.14
127 1 0.00
129 1 0.00
130 79 0.22
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (125 bp):
TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTCTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTT
Found at i:50388500 original size:249 final size:253
Alignment explanation
Indices: 50388035--50388559 Score: 668
Period size: 249 Copynumber: 2.1 Consensus size: 253
50388025 TACGGCCAAG
* * * ** *
50388035 TAGGAACTATTATAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAAAGCTTTCTTCAGTAATTTTGCTGACAATGC
* ** * * * * *
50388100 ATCCTGCTTGAAGTGCTTTTGACACTGTTTTTTTTTTCAAAATTGTCTTCTTATAATTATTTTTT
66 ATACTGCTTGAAGCACTTTTGACAC----TTATTTTTCAAAACTGTATTCTCAAAATTATTTTTT
* * * *
50388165 TAGGAACTACTGTAGAAAAAGAACGTCCATGTGGGAGCTTTCTTCAGTAATTTTGCTGATAGTGC
127 TAGGAACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTCTTCAATAATTTTGCTGACAGTGC
*
50388230 ATCCTGCTTATAGCATTTTTGACACTATTTTTTCAGAA-CTGTCTTCTCAAAATT-ATTTTT-
192 ATCCTGCTTATAGCATTTTTGACACTATCTTTTCAGAATC-GTCTTCTCAAAATTAATTTTTC
* * *
50388290 TAGGAACTACTGTAGAAAAAGAGCTTCCACGTGAAAGCTTTCTTCAGTAATTTTGCTGATAGTGC
1 TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAAAGCTTTCTTCAGTAATTTTGCTGACAATGC
* * *
50388355 ATATTGCTTGAAGCATTTTTGACAC-TATTTTTCAGAACTGTATTCTCAAAATTA-TTTTTTAGG
66 ATACTGCTTGAAGCACTTTTGACACTTATTTTTCAAAACTGTATTCTCAAAATTATTTTTTTAGG
* *
50388418 AACTACTGTAGAAAAAGAGCGTCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTGCATCC
131 AACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTCTTCAATAATTTTGCTGACAGTGCATCC
* *
50388483 TGCTTGA-AGCGTTTTTGACATTATCTTTTCAGAATCGTCTTCTCAAAATTAATTTTTC
196 TGCTT-ATAGCATTTTTGACACTATCTTTTCAGAATCGTCTTCTCAAAATTAATTTTTC
* *
50388541 T-GAAACTACTGCAGAAAAA
1 TAGGAACTACTGTAGAAAAA
50388560 AACAAAATCC
Statistics
Matches: 235, Mismatches: 31, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
249 111 0.47
250 47 0.20
251 1 0.00
255 76 0.32
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (253 bp):
TAGGAACTACTGTAGAAAAAGAGCGTCCACGTGAAAGCTTTCTTCAGTAATTTTGCTGACAATGC
ATACTGCTTGAAGCACTTTTGACACTTATTTTTCAAAACTGTATTCTCAAAATTATTTTTTTAGG
AACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTCTTCAATAATTTTGCTGACAGTGCATCC
TGCTTATAGCATTTTTGACACTATCTTTTCAGAATCGTCTTCTCAAAATTAATTTTTC
Found at i:50388668 original size:34 final size:34
Alignment explanation
Indices: 50388624--50388754 Score: 144
Period size: 34 Copynumber: 3.9 Consensus size: 34
50388614 TAAACACAAA
* *
50388624 AATTATTTAAAAAAAT-TAAACCCTAATTTAATT
1 AATTTTTTAAAAAAATCTAAAACCTAATTTAATT
*
50388657 AATTTTCTT-AAAAAATCTAAACCCTAATTTAATT
1 AATTTT-TTAAAAAAATCTAAAACCTAATTTAATT
*** *
50388691 AATTTGTTTAAAACCCT-TAAAACCTAATGTAATT
1 AATTT-TTTAAAAAAATCTAAAACCTAATTTAATT
*
50388725 -ATTTTTTAAAAAACTCTAAAACCTAATTTA
1 AATTTTTTAAAAAAATCTAAAACCTAATTTA
50388755 TTTTTTAAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
32 9 0.11
33 29 0.35
34 41 0.49
35 5 0.06
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.40
Consensus pattern (34 bp):
AATTTTTTAAAAAAATCTAAAACCTAATTTAATT
Found at i:50389356 original size:18 final size:18
Alignment explanation
Indices: 50389330--50389365 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
50389320 GTTTTTAATA
*
50389330 TTTATAATTTTATAATTT
1 TTTAAAATTTTATAATTT
*
50389348 TTTAAAATTTTATTATTT
1 TTTAAAATTTTATAATTT
50389366 GAGTGTTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTAAAATTTTATAATTT
Done.