Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 170 of 213
Found at i:51080876 original size:6 final size:6
Alignment explanation
Indices: 51080865--51080909 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
51080855 TGTTAAATTA
51080865 GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGG
1 GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGGGGC GGG
51080910 ATCAATATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.00, C:0.16, G:0.84, T:0.00
Consensus pattern (6 bp):
GGGGGC
Found at i:51084654 original size:24 final size:25
Alignment explanation
Indices: 51084592--51084657 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
51084582 ATAATTTTCA
* *
51084592 AAAGCACAGTCT-ATTTTTCTTCTC
1 AAAGCCCAGTCTAATTTGTCTTCTC
* *
51084616 AAAGTCCAAAT-TAATTTGT-TTCTC
1 AAAG-CCCAGTCTAATTTGTCTTCTC
51084640 AAAGCCCAGTCTAATTTG
1 AAAGCCCAGTCTAATTTG
51084658 GTTTAAAACA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
23 4 0.12
24 21 0.64
25 8 0.24
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (25 bp):
AAAGCCCAGTCTAATTTGTCTTCTC
Found at i:51094364 original size:24 final size:23
Alignment explanation
Indices: 51094324--51094373 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
51094314 GTTTGATTGT
*
51094324 TAAAATAAATAGGAATAAGTAAAA
1 TAAAATAAATAGAAAT-AGTAAAA
*
51094348 TAAAATAAAATA-AAATATTAAAA
1 TAAAAT-AAATAGAAATAGTAAAA
51094371 TAA
1 TAA
51094374 TTGGAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 9 0.39
24 9 0.39
25 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (23 bp):
TAAAATAAATAGAAATAGTAAAA
Found at i:51098949 original size:26 final size:26
Alignment explanation
Indices: 51098920--51098972 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
51098910 GATATTTGTA
51098920 TATGTTCATGTCAGGATACATATCAT
1 TATGTTCATGTCAGGATACATATCAT
51098946 TATGTTCATGTCAGGATACATATCAT
1 TATGTTCATGTCAGGATACATATCAT
51098972 T
1 T
51098973 CTTTTACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (26 bp):
TATGTTCATGTCAGGATACATATCAT
Found at i:51099311 original size:21 final size:21
Alignment explanation
Indices: 51099285--51099391 Score: 128
Period size: 21 Copynumber: 5.1 Consensus size: 21
51099275 TCGAAAGATG
51099285 AACAGAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * *
51099306 AACAGAAACTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGCTA
* *
51099327 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
51099348 AACAGAAGCTCGA-AAGAGCTA
1 AACAGAAGCTC-ATAAGAGCTA
*
51099369 AACAGGAGCTCGA-AAGAGCTA
1 AACAGAAGCTC-ATAAGAGCTA
51099390 AA
1 AA
51099392 TTGAAAATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
21 76 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:51099331 original size:42 final size:42
Alignment explanation
Indices: 51099266--51099391 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 42
51099256 CAGATACGCC
*
51099266 AACAGAAGCTCGAAAGA--TGAACAGAAGCTCATAAGAGCTA
1 AACAGAAACTCGAAAGAGCTGAACAGAAGCTCATAAGAGCTA
* * *
51099306 AACAGAAACTC-ATAAGAGTTGAACAGAAGCTCGTAAGAGCTG
1 AACAGAAACTCGA-AAGAGCTGAACAGAAGCTCATAAGAGCTA
* * *
51099348 AACAGAAGCTCGAAAGAGCTAAACAGGAGCTCGA-AAGAGCTA
1 AACAGAAACTCGAAAGAGCTGAACAGAAGCTC-ATAAGAGCTA
51099390 AA
1 AA
51099392 TTGAAAATAA
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.01
40 14 0.19
42 56 0.78
43 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.24, T:0.13
Consensus pattern (42 bp):
AACAGAAACTCGAAAGAGCTGAACAGAAGCTCATAAGAGCTA
Found at i:51100970 original size:15 final size:15
Alignment explanation
Indices: 51100945--51100980 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
51100935 GGTGTGACAT
51100945 TTACC-TAGGTTAAA
1 TTACCTTAGGTTAAA
*
51100959 TTCCCTTAGGTTAAA
1 TTACCTTAGGTTAAA
51100974 TTACCTT
1 TTACCTT
51100981 GGAAAAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (15 bp):
TTACCTTAGGTTAAA
Found at i:51119636 original size:16 final size:16
Alignment explanation
Indices: 51119615--51119654 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
51119605 CGTTTGGTTC
51119615 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
51119631 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
51119647 GGTGTAAT
1 GCTGTAAT
51119655 AGTAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.05, G:0.33, T:0.28
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:51119919 original size:18 final size:18
Alignment explanation
Indices: 51119887--51120039 Score: 67
Period size: 18 Copynumber: 8.9 Consensus size: 18
51119877 TTATTATTAA
51119887 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
51119905 ATATAATTTAAT-AAATT
1 ATATAATTTAATAAAAAT
* ****
51119922 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAAAT
51119941 ATATGAATTTAAT-AAAAT
1 ATAT-AATTTAATAAAAAT
* * * *
51119959 -CATAATAT-ATAATACT
1 ATATAATTTAATAAAAAT
* * *
51119975 ATAAAATATAATTTAAAAT
1 ATATAATTTAA-TAAAAAT
*
51119994 A-ATAA-TT-AT-TAAA-
1 ATATAATTTAATAAAAAT
51120007 -TATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
51120024 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
51120040 TTCTTAATAT
Statistics
Matches: 97, Mismatches: 23, Indels: 30
0.65 0.15 0.20
Matches are distributed among these distances:
13 4 0.04
14 5 0.05
15 5 0.05
16 15 0.15
17 16 0.16
18 35 0.36
19 11 0.11
20 3 0.03
21 3 0.03
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.41
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:51120000 original size:13 final size:12
Alignment explanation
Indices: 51119976--51120016 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
51119966 TATAATACTA
51119976 TAAAATATAATT
1 TAAAATATAATT
51119988 TAAAATAATAATT
1 TAAAAT-ATAATT
*
51120001 ATTAAATATAATT
1 -TAAAATATAATT
51120014 TAA
1 TAA
51120017 TAAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:51120004 original size:122 final size:122
Alignment explanation
Indices: 51119873--51121641 Score: 909
Period size: 119 Copynumber: 15.0 Consensus size: 122
51119863 ATATTTTAAC
51119873 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAATTCTTAATATTAAATATT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAATTCTTAATATTAAATATT
51119938 CTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
66 CTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
51119995 AT-A--ATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATAT
* * * * * *
51120057 TATTAAATGAATTTACTATAATCATAATATATAATAATTTAAAATATAATTTAAAATA
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* * * **
51120115 ATTATTATTA-AAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCAAAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATAT
* *
51120179 TC-T-TA-GAATTTACTAAAATCATAATATATAATATTATAAAAATATAATTT-AAAT-
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTAT-AAAATATAATTTAAAATA
*
51120233 -TAATTATCT-TTAAATATAATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATA
1 ATAATTAT-TATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATA
* * *
51120296 TTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATTTAAAATA
64 TTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* * * *
51120355 ATAATTATTA-AAAATATAATTTAGTAAAATTATATAATTTAATAAAATTTTTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATAT
* *
51120419 TCTTATATGAATTTAATAAAATCATAATATATACTACTAAAAAATATAATTT--AA-A
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* *
51120474 ATAATTAATATTAAATATAATTTAAT--AAA-AT-T--CTTAAT--A---TTAA-A-T--AT-TC
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAATTCTTAATATTAAATAT-
* *
51120523 T-T-AAATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* * ** * *
51120579 ATTATTATT-TAAAATATAATTTAA-AATCAT-TATTAATTTAATAAAATCATAATA-TATAATA
1 ATAATTATTATTAAATATAATTTAATAAAAATATA-TAATTTAATAAATTCTTAATATTA-AATA
* * *
51120640 --C-TATA-AAATATAATTTAAA--ATAAT-TAT--TA-T-T-AAATATAATTT--AATA
64 TTCTTATATGAATTTAA-TAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* * * * * * * *
51120686 AAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAA
1 ATAAT-TATTATTAAATATAA-T-TTAATA--AAA-A----TATAT-AATTTAATAAATTCTTAA
* * * * *
51120751 TA-TATAATA--C-TATA-AAATATAATTTAAA--ATAAT-TAT--TATTA-AAAATATTATTTA
55 TATTA-AATATTCTTATATGAATTTAA-TAAAATCATAATATATAATACTATAAAATATAATTTA
51120805 GTAAA-A
118 --AAATA
* * * * * * * * *
51120811 AT-A-TATAATTTAATAAAATTATTAACATTAAATATTCCTTGAATTTACTAAAATCATAATA-T
1 ATAATTATTATTAAATATAA-T-TTAATA-AAAATA-T--AT-AATTTAATAAATTCTTAATATT
* * * *
51120873 ATAATA--C-TATA-AAATATAATTTAAA--ATAAT-TAT--TATTA-AAAATATAATTTAGTAA
59 A-AATATTCTTATATGAATTTAA-TAAAATCATAATATATAATACTATAAAATATAATTTA--AA
51120928 A-A
120 ATA
* * * * * * * *
51120930 AT-A-TATAATTTAATAAAATTCTTAATATTAAATAT-T-CTTAAATGAA-T-TTACTA--AAAT
1 ATAATTATTATTAAATATAA-T-TTAATA-AAAATATATAATTTAATAAATTCTTAATATTAAAT
** *** * *
51120987 CA-TAATATAT-AACACAATAAAAT-ATAATTTAAAATAATAATTATTAAAAATATAATTTAATA
63 -ATTCTTATATGAATTTAATAAAATCATAA--T-ATATAAT-ACTA-T-AAAATATAATTTAA-A
*
51121049 AAA
120 ATA
* * * * *
51121052 ATATATAATTTAATAAA-AT-TTTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAAT
1 ATA-ATTA-TTATTAAATATAATTTAATA--AAA-A----TATAT-AATTTAATAAATTCTTAAT
* *** * * ** *
51121115 A-TATACTACTATAAAATAT-AATTTAA-AATAATTATTAT-TA-AATA-TAATTTAATAAAATT
56 ATTA-AATA-T-TCTTATATGAATTTAATAA-AATCATAATATATAATACT-ATAAAATATAATT
*
51121174 CT-TAATA
116 -TAAAATA
* * * * * * * *
51121181 TTAAATATTCTTAAAT-GAATTTACT-AAAATCATAATATATAATACTATAAAAT-ATAAT-TTA
1 ATAATTATTATTAAATATAATTTAATAAAAAT-AT-ATA-AT-TTA--ATAAATTCTTAATATTA
** *
51121242 AA-ATAATTAT-T-AATTTAATAAAATCATAATATATAATACTATGAAATATAATTT--AA-A
60 AATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* *
51121299 ATAATTATTATTAAATATAATTTAAT--AAA-AT-T--CTTCAT--A---TTAA-A-T--AT-TC
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAATTCTTAATATTAAATAT-
* *
51121348 T-T-AAATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* * * * *
51121404 ATTATTATTA-AAAATATAATTTAGTAAAAATATATAATTTGATAAAATTATTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATAT
*
51121468 TC-T-TA-GAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
* *
51121523 ATAATTATTA-AAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATTAAATAT
*
51121587 TCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAAAATATAATTTA
65 TCTTATATGAATTTAATAAAATCATAATATATAATACTAT--AAAATATAATTTA
51121642 TTAAAAATAT
Statistics
Matches: 1347, Mismatches: 150, Indels: 298
0.75 0.08 0.17
Matches are distributed among these distances:
100 1 0.00
101 4 0.00
102 85 0.06
103 3 0.00
104 37 0.03
105 20 0.01
106 5 0.00
107 11 0.01
108 10 0.01
109 26 0.02
110 9 0.01
111 15 0.01
112 17 0.01
113 7 0.01
114 14 0.01
115 9 0.01
116 16 0.01
117 15 0.01
118 76 0.06
119 336 0.25
120 187 0.14
121 64 0.05
122 242 0.18
123 18 0.01
124 24 0.02
125 14 0.01
126 7 0.01
127 6 0.00
128 10 0.01
129 6 0.00
130 8 0.01
131 10 0.01
132 3 0.00
133 7 0.01
134 3 0.00
135 2 0.00
136 3 0.00
137 14 0.01
138 3 0.00
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (122 bp):
ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAATTCTTAATATTAAATATT
CTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATA
Found at i:51120107 original size:12 final size:12
Alignment explanation
Indices: 51120090--51120137 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 12
51120080 ATAATATATA
51120090 ATAATTTAAAAT
1 ATAATTTAAAAT
51120102 ATAATTTAAAAT
1 ATAATTTAAAAT
*
51120114 AATTATTATTAAAAAT
1 -A-TA--ATTTAAAAT
51120130 ATAATTTA
1 ATAATTTA
51120138 GTAAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 16 0.53
13 1 0.03
14 4 0.13
15 1 0.03
16 8 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATAATTTAAAAT
Found at i:51120143 original size:15 final size:16
Alignment explanation
Indices: 51120097--51120161 Score: 57
Period size: 18 Copynumber: 4.2 Consensus size: 16
51120087 ATAATAATTT
51120097 AAAATATAATTTAA-A
1 AAAATATAATTTAATA
* *
51120112 ATAAT-T-A-TTATTA
1 AAAATATAATTTAATA
*
51120125 AAAATATAATTTAGTAA
1 AAAATATAATTTAAT-A
51120142 AAATATATAATTTAATA
1 AAA-ATATAATTTAATA
51120159 AAA
1 AAA
51120162 TTCAAAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 3 0.08
13 6 0.15
14 2 0.05
15 5 0.13
16 4 0.10
17 8 0.21
18 11 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATATAATTTAATA
Found at i:51120149 original size:18 final size:17
Alignment explanation
Indices: 51120124--51120161 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
51120114 AATTATTATT
*
51120124 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
51120141 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
51120159 AAA
1 AAA
51120162 TTCAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:51120263 original size:16 final size:17
Alignment explanation
Indices: 51120244--51120279 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
51120234 AATTATCTTT
51120244 AAATAT-AATTTAATAA
1 AAATATAAATTTAATAA
51120260 AAATATAAAATTTAATAA
1 AAATAT-AAATTTAATAA
51120278 AA
1 AA
51120280 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
18 12 0.67
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATAAATTTAATAA
Found at i:51120389 original size:18 final size:18
Alignment explanation
Indices: 51120368--51120440 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
51120358 ATTATTAAAA
*
51120368 ATATAATTTAGTAAAATT
1 ATATAATTTAATAAAATT
51120386 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
51120404 -TTTAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
51120423 ATATGAATTTAATAAAAT
1 ATAT-AATTTAATAAAAT
51120441 CATAATATAT
Statistics
Matches: 42, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
17 5 0.12
18 19 0.45
19 11 0.26
20 4 0.10
21 3 0.07
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (18 bp):
ATATAATTTAATAAAATT
Found at i:51120482 original size:14 final size:15
Alignment explanation
Indices: 51120456--51120517 Score: 51
Period size: 14 Copynumber: 4.3 Consensus size: 15
51120446 TATATACTAC
51120456 TAAAA-AATATAAT-T
1 TAAAATAAT-TAATAT
51120470 TAAAATAATTAATAT
1 TAAAATAATTAATAT
*
51120485 TAAATATAATT--TAA
1 TAAA-ATAATTAATAT
**
51120499 TAAAATTCTTAATAT
1 TAAAATAATTAATAT
51120514 TAAA
1 TAAA
51120518 TATTCTTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.10
14 15 0.38
15 14 0.36
16 6 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAAATAATTAATAT
Found at i:51120498 original size:102 final size:102
Alignment explanation
Indices: 51120386--51120929 Score: 496
Period size: 102 Copynumber: 5.2 Consensus size: 102
51120376 TAGTAAAATT
* *
51120386 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
*
51120451 ACTACTAAAAAATATAATTTAAAATAATTAATATTAA
66 AATACTAAAAAATATAATTTAAAATAATTAATATTAA
*
51120488 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
* *
51120553 AATACTATAAAATATAATTTAAAATAATTATTATTTAAA
66 AATACTAAAAAATATAATTTAAAATAATTAATA-TT-AA
* * * * * * * *
51120592 ATATAATTTAA-AATCATTATTAAT-TTAATAAAATCAT-AAT--ATATAAT--ACT-ATAAAAT
1 ATATAATTTAATAA-AATTCTTAATATTAA-ATATTCTTAAATGAATTTAATAAAATCATAATAT
* * **
51120649 ATAAT-TTAAAATAAT-TATTATTAAATATAATTTAATAAAAA
64 ATAATACTAAAA-AATATAAT-TTAAA-ATAA-TTAATATTAA
*
51120690 TATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATA
1 -ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATA
* *
51120755 TAATACTATAAAATATAATTTAAAATAATTATTATTAAAA
65 TAATACTAAAAAATATAATTTAAAATAATTAATATT--AA
* * * * * *
51120795 ATATTATTTAGTAAAAATATATAATTTAATAAAATTATTAACATTAAATATTCCTTGAATTTACT
1 ATATAATTTAATAAAATTCT-TAA--T-ATTAAA-TATT--C-TT-AA-A-----TGAATTTAAT
* *
51120860 AAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAA
51 AAAATCATAATATATAATACTAAAAAATATAATTTAAAATAATTAATATT--AA
*
51120914 ATATAATTTAGTAAAA
1 ATATAATTTAATAAAA
51120930 ATATATAATT
Statistics
Matches: 364, Mismatches: 42, Indels: 55
0.79 0.09 0.12
Matches are distributed among these distances:
97 7 0.02
98 21 0.06
99 30 0.08
100 14 0.04
101 5 0.01
102 97 0.27
103 16 0.04
104 48 0.13
105 24 0.07
106 7 0.02
107 1 0.00
108 5 0.01
109 4 0.01
111 1 0.00
112 2 0.01
113 2 0.01
114 1 0.00
119 79 0.22
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (102 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
AATACTAAAAAATATAATTTAAAATAATTAATATTAA
Found at i:51120505 original size:120 final size:120
Alignment explanation
Indices: 51119867--51120503 Score: 937
Period size: 122 Copynumber: 5.3 Consensus size: 120
51119857 TTAATAATAT
* *
51119867 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAAT-AAATTCTTAATATT
1 TTTAAAATAATTAATATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
*
51119931 AAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
51119986 TTTAAAATAA-TAATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTAA-TATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
* * * * *
51120050 TAAATATTATTAAATGAATTTACTATAATCATAATATATAATAATTTAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * **
51120106 TTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCAAAATA
1 TTTAAAATAATTAATATT--AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA
*
51120171 TTAAATATTC-T-TA-GAATTTACTAAAATCATAATATATAATATTATAAAAATATAA
64 TTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTAT-AAAATATAA
* * *
51120226 TTTAAATTAATT-ATCTTTAAATATAATTTAATAAAAATATAAAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTAAT-ATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
* *
51120290 TAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
51120346 TTTAAAATAA-TAATTATTAAAAATATAATTTAGTAAAATTATATAATTTAATAAAATTTTTAAT
1 TTTAAAATAATTAA-TATT--AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAAT
* * *
51120410 ATTAAATATTCTTATATGAATTTAATAAAATCATAATATATACTACTAAAAAATATAA
63 ATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
51120468 TTTAAAATAATTAATATTAAATATAATTTAATAAAA
1 TTTAAAATAATTAATATTAAATATAATTTAATAAAA
51120504 TTCTTAATAT
Statistics
Matches: 464, Mismatches: 39, Indels: 29
0.87 0.07 0.05
Matches are distributed among these distances:
118 53 0.11
119 77 0.17
120 139 0.30
121 34 0.07
122 158 0.34
123 3 0.01
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (120 bp):
TTTAAAATAATTAATATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:51120590 original size:16 final size:15
Alignment explanation
Indices: 51120569--51120619 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 15
51120559 ATAAAATATA
51120569 ATTTAAAATAATTATT
1 ATTTAAAAT-ATTATT
51120585 ATTTAAAATA-TA--
1 ATTTAAAATATTATT
51120597 ATTTAAAATCATTATT
1 ATTTAAAAT-ATTATT
51120613 AATTTAA
1 -ATTTAA
51120620 TAAAATCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
12 9 0.30
13 1 0.03
14 4 0.13
15 1 0.03
16 9 0.30
17 6 0.20
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTAAAATATTATT
Found at i:51120592 original size:28 final size:28
Alignment explanation
Indices: 51120560--51120701 Score: 127
Period size: 28 Copynumber: 5.1 Consensus size: 28
51120550 TATAATACTA
51120560 TAAAATATAATTTAAAATAATTATTATT
1 TAAAATATAATTTAAAATAATTATTATT
*
51120588 TAAAATATAATTTAAAATCATTATTAATT
1 TAAAATATAATTTAAAATAATTATT-ATT
* * *
51120617 T--AATAAAATCATAATATATAA-TACTA--
1 TAAAATATAAT-TTAA-A-ATAATTATTATT
51120643 TAAAATATAATTTAAAATAATTATTA-T
1 TAAAATATAATTTAAAATAATTATTATT
* *
51120670 T-AAATATAATTTAATAAAAATATATAATT
1 TAAAATATAATTTAA-AATAAT-TATTATT
51120699 TAA
1 TAA
51120702 TAAAATTCTT
Statistics
Matches: 92, Mismatches: 10, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
25 4 0.04
26 19 0.21
27 16 0.17
28 39 0.42
29 10 0.11
30 4 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (28 bp):
TAAAATATAATTTAAAATAATTATTATT
Found at i:51120624 original size:83 final size:82
Alignment explanation
Indices: 51120530--51120716 Score: 288
Period size: 83 Copynumber: 2.3 Consensus size: 82
51120520 TTCTTAAATG
*
51120530 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTTAAAATA
1 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTA-TT-AAATA
**
51120595 TAATTTAA-AATCAT-TATT
64 TAATTTAATAAAAATATA-T
51120613 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATA
1 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATA
51120678 ATTTAATAAAAATATAT
66 ATTTAATAAAAATATAT
*
51120695 AATTTAATAAAATTCTTAATAT
1 AATTTAATAAAA-TCATAATAT
51120717 TAAATATTCT
Statistics
Matches: 97, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
81 13 0.13
82 19 0.20
83 65 0.67
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (82 bp):
AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATA
ATTTAATAAAAATATAT
Found at i:51120821 original size:18 final size:16
Alignment explanation
Indices: 51120776--51120834 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
51120766 AATATAATTT
*
51120776 AAAATAATTA-TTATTA
1 AAAAT-ATTATTTAATA
*
51120792 AAAATATTATTTAGTA
1 AAAATATTATTTAATA
51120808 AAAATATATAATTTAATA
1 AAAATAT-T-ATTTAATA
*
51120826 AAATTATTA
1 AAAATATTA
51120835 ACATTAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 4 0.11
16 18 0.49
17 2 0.05
18 13 0.35
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAATATTATTTAATA
Found at i:51120908 original size:119 final size:119
Alignment explanation
Indices: 51120613--51121171 Score: 881
Period size: 122 Copynumber: 4.6 Consensus size: 119
51120603 AATCATTATT
*
51120613 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT-AAATAT
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAATAT
*
51120677 AATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATG
66 AATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC--ATATG
51120733 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT-AAAATA
* * * * *
51120798 TTATTTAGTAAAAATATATAATTTAATAAAATTATTAACATTAAATATTCCT-TG
65 TAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCATATG
51120852 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT-AAAATA
* *
51120917 TAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATG
65 TAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC--ATATG
* * *
51120974 AATTTACTAAAATCATAATATATAACACAATAAAATATAATTTAAAATAATAATTATTAAAAATA
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT-AAAATA
*
51121039 TAATTTAATAAAAATATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATG
65 TAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC--ATATG
* *
51121096 AATTTAATAAAATCATAATATATACTACTATAAAATATAATTTAAAATAATTATTATT-AAATAT
1 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAATAT
51121160 AATTTAATAAAA
66 AATTTAATAAAA
51121172 TTCTTAATAT
Statistics
Matches: 411, Mismatches: 23, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
119 114 0.28
120 75 0.18
122 222 0.54
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (119 bp):
AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAATAT
AATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCATATG
Found at i:51120929 original size:15 final size:16
Alignment explanation
Indices: 51120883--51120947 Score: 57
Period size: 18 Copynumber: 4.2 Consensus size: 16
51120873 ATAATACTAT
51120883 AAAATATAATTTAA-A
1 AAAATATAATTTAATA
* *
51120898 ATAAT-T-A-TTATTA
1 AAAATATAATTTAATA
*
51120911 AAAATATAATTTAGTAA
1 AAAATATAATTTAAT-A
51120928 AAATATATAATTTAATA
1 AAA-ATATAATTTAATA
51120945 AAA
1 AAA
51120948 TTCTTAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 3 0.08
13 6 0.15
14 2 0.05
15 5 0.13
16 4 0.10
17 8 0.21
18 11 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATATAATTTAATA
Found at i:51120935 original size:18 final size:17
Alignment explanation
Indices: 51120910--51120947 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
51120900 AATTATTATT
*
51120910 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
51120927 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
51120945 AAA
1 AAA
51120948 TTCTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:51121025 original size:15 final size:14
Alignment explanation
Indices: 51121005--51121070 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 14
51120995 ATAACACAAT
51121005 AAAATATAATTTAA
1 AAAATATAATTTAA
* *
51121019 AATA-ATAATTATTA
1 AAAATATAATT-TAA
51121033 AAAATATAATTTAATAA
1 AAAATATAA-TT--TAA
51121050 AAATATATAATTTAA
1 AAA-ATATAATTTAA
51121065 TAAAAT
1 -AAAAT
51121071 TTTTAATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
13 6 0.14
14 8 0.19
15 9 0.21
16 5 0.12
17 8 0.19
18 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
AAAATATAATTTAA
Found at i:51121038 original size:16 final size:16
Alignment explanation
Indices: 51121017--51121069 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
51121007 AATATAATTT
*
51121017 AAAATAATAATTATTA
1 AAAATAATAATTAATA
51121033 AAAAT-ATAATTTAATA
1 AAAATAATAA-TTAATA
51121049 AAAATATATAATTTAATA
1 AAAATA-ATAA-TTAATA
51121067 AAA
1 AAA
51121070 TTTTTAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
15 4 0.12
16 15 0.45
18 14 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATAATAATTAATA
Found at i:51121045 original size:427 final size:422
Alignment explanation
Indices: 51120185--51123045 Score: 1902
Period size: 427 Copynumber: 6.4 Consensus size: 422
51120175 ATATTCTTAG
* * *
51120185 AATTTACTAAAATCATAATATATAATATTATAAAAATATAATTTAAATTAATTATCTTTAAATAT
1 AATTTAATAAAATCATAATATATAATACTATAAAAATATAATTTAAAATAATTATCTTTAAATAT
51120250 AATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTA
66 AATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTA
51120315 AAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATTATTAAAAATATAATTTAGT
131 AAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATTATTAAAAATATAATTTAGT
* * *
51120380 AAAATTATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTAATAAAATCATA
196 AAAAATATATAATTTAATAAAATTATTAACATTAAATATTC-TATATGAATTTAATAAAATCATA
*
51120445 ATATATACTACTAAAAAATATAATTTAAAATAATTAATATTAAATATAATTTAATAAAATTCTTA
260 ATATATAATACTAAAAAATATAATTTAAAATAATTAATATTAAATATAATTTAATAAAATTCTTA
* *
51120510 ATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAA
325 ATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACAATAAAATATAATTT-A
51120575 AATAATTATTATTTAAAATATAATTTAAAATCATTATT
389 AATAATTA-TA-TT-AAATATAATTTAAAA-CATTATT
51120613 AATTTAATAAAATCATAATATATAATACTAT-AAAATATAATTTAAAATAATTAT-TATTAAATA
1 AATTTAATAAAATCATAATATATAATACTATAAAAATATAATTTAAAATAATTATCT-TTAAATA
*
51120676 TAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACT
65 TAATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACT
* * *
51120741 AAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATATTATTTAG
130 AAAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATTATTAAAAATATAATTTAG
* *
51120806 TAAAAATATATAATTTAATAAAATTATTAACATTAAATATTC-CT-TGAATTTACTAAAATCATA
195 TAAAAATATATAATTTAATAAAATTATTAACATTAAATATTCTATATGAATTTAATAAAATCATA
*
51120869 ATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAATAT
260 ATATATAATACTAAAAAATATAATTT--AA-AA-TA--ATT----A-AT-A--T--T---AA-AT
51120934 ATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAA
305 ATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAA
* * *
51120999 CACAATAAAATATAATTTAAAATAATAATTATTAAAAATATAATTTAATAAAAATATAT
370 CACAATAAAATATAATTT-AAATAATTA-TATT--AAATATAATTTAA-AACATTAT-T
** ** * *
51121058 AATTTAATAAAATTTTTAATAT-TAAATATTCTTATATGAATTTAA-TAAAATCATAATATATAC
1 AATTTAATAAAA-TCATAATATAT-AATA--C-TATAAAAATATAATTTAAA--ATAAT-TAT-C
51121121 TACTATAAAATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAATTCTTAATATTAA
57 T--T-T-AAATATAATTTAATAA-AA--A-TA-T--A-A-AATTTAATAAAATTCTTAATATTAA
* *
51121185 ATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATT
109 ATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAATTTAAAATAATA
* * * * * *
51121250 ATTAATTTAATAAAATCATAATATA-TAATACTATGA-AATATAATTTAAA--A-T-A-ATT-AT
174 ATT-A-TT-A-AAAAT-ATAATTTAGTAAAAATAT-ATAATTTAA-TAAAATTATTAACATTAAA
** * * * *** * *
51121307 TATTAAATAT-AATTTAATAAAATTCTTCATAT-TAAATATTCTTAAAT-GAATTT--ACTAA--
232 TATTCTATATGAATTTAATAAAA-TCATAATATAT-AATACTAAAAAATATAATTTAAAATAATT
* * ** *
51121365 AATCA-TAATATATAATACT-ATAAAA-T-ATAAT-TTAAA-ATAATT--AT-TA-TTA--AAAA
295 AAT-ATTAA-ATATAAT-TTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAA
* * **
51121418 T-ATAATTTAGTAA-A-AAT---ATATAATTTGATAA-AA-T-TATT-AATATTAA-AT-ATTC-
357 TCATAATATA-TAACACAATAAAATATAATTT-A-AATAATTATATTAAATA-TAATTTAAAACA
*
51121470 TTA-G
418 TTATT
* *
51121474 AATTTACTAAAATCATAATATATAATACTAT-AAAATATAATTTAAAATAATAAT-TATTAAAAA
1 AATTTAATAAAATCATAATATATAATACTATAAAAATATAATTTAAAATAATTATCT-TT--AAA
* * *
51121537 TATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTA
63 TATAATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTA
* * *
51121602 CTAAAATCATAATATATAATACTATAAAAAATATAATTTATTAAAAATATATAATTAATAAAATT
128 CTAAAATCATAATATATAACACTAT--AAAATATAA--T-TT-AAAATA-ATAATTATTAAAAAT
* * **** * *
51121667 CTTAATATTAAATATTCTTATATGAATTTAATAAAATCA-TAATA-TATAATA--CTATA--AA-
186 -ATAAT-TT-AGTAAAAATATAT-AATTTAATAAAATTATTAACATTA-AATATTCTATATGAAT
* * * ** *
51121725 --AATATAAT-TTAA-A-ATAATTATTATTAAATATAATTT--ATTAA--AA-A-T--ATATAAT
246 TTAATAAAATCATAATATATAA-TACTAAAAAATATAATTTAAAATAATTAATATTAAATATAAT
* * *
51121777 TTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCAGAATATATAATACTA
310 TTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACAA
* *
51121842 TAAAATATAATTTAAAATAATTATTACTAAAAATATAATTTAGTAAA-AATATAT
375 TAAAATATAATTT-AAATAATTA-TA-T-TAAATATAATTTA--AAACATTAT-T
* *
51121896 AATTTCATAAAATTCTTAATAT-TAAATATTCTAAGAATTTACTAAAATCATAATATATAATACT
1 AATTTAATAAAA-TCATAATATAT-AATA--CT----A--TA--AAAAT-ATAAT-T-TAA-A--
* * * *
51121960 ATAAAATATAATTTAAAATAATTATCATTAAAATATAATTTAGTAAAAGTATATAAGTTAATAAA
48 AT-AATTAT-CTTT-AAAT-A-TA--A-T----T-TAA--TA--AAAA-TATAAAATTTAATAAA
* *
51122025 ATTCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATAT
95 ATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATAT
* * *
51122090 AATTTAAAATAATTATTATT--AAATATAATTTA-TTAAAATATATAATTTAATAAAATTCTTAA
160 AATTTAAAATAATAATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTATTAA
* *
51122152 TATTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAA
225 CATTAAATATTC-TATATGAATTTAATAAAATCATAATATATAATACTAAAAAATATAATTT--A
*
51122217 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATGAAATTCTTAATATTAAATAT
287 A-AA-TA--ATT--A-AT-A--T--T---AA-ATATAATTTAATAAAATTCTTAATATTAAATAT
* * * *
51122282 TCTTAAATGGATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTA
336 TCTTAAATGAATTTACTAAAATCATAATATATAACACAATAAAATATAATTT-AAATAATTA-TA
*
51122347 TTAAAAATATAATTTAGTAAA-AATATAT
399 TT--AAATATAATTTA--AAACATTAT-T
* *
51122375 AATTTAATAAAATGCTTAATATTAAATATTCTTAGAATTTACTAAAATCATAATATATAATACTA
1 AATTTAATAAAAT-C-----A-T-AATA----TATAA--TACT---AT-A-AAAATATAAT--T-
* *
51122440 TAAAATATAATTTAAATTAATTATTTTAAATATAATTTAATAAAAATATATAATTTAATAAAATT
44 T---A-A-AA--T-AATT-A-T-CTTTAAATATAATTTAATAAAAATATAAAATTTAATAAAATT
51122505 CTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAAT
98 CTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAAT
* *
51122570 TTAAAATAATAATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATAT
163 TTAAAATAATAATTATTAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTATTAACAT
* * *
51122635 TAAATATTCTTATATGAGTTTACTAAAATCATAATATATAATACTATAAAATATAATTAAAATAA
228 TAAATATTC-TATATGAATTTAATAAAATCATAATATATAATACTAAAAAATATAATT----TAA
*
51122700 TTATTATTAAATATAATTATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAT
288 --A--A-T-AAT-TAA-TATT--AA-ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAA
* * *
51122765 ATGAATTTAATAAAATCAT-A-ATATAATACTATAAAATATAATTTAAAATAATTATTATTAAAT
342 ATGAATTTACTAAAATCATAATATATAACACAATAAAATATAATTT-AAATAATTA-TATTAAAT
* *
51122828 ATAATTTAATAAAAATATAT
405 ATAATTTAA-AACATTAT-T
*
51122848 AATTTAATAAAATTCTTAATAT-TAAATATTCTTAGAATTTACTAAAATCATAATATATAATACT
1 AATTTAATAAAA-TCATAATATAT-AATA--C-T---A--TA--AAAAT-ATAAT-T-TAA-A--
* * *
51122912 ATAAAATATAATTTAAATTAGTTATTTTTAAATATAATTTAATAAAATATATAATTTAATAAAAT
48 AT-AATTAT-CTTTAAA-TA--TA-ATTT-AATA-AA---AAT---ATA-A-AATTTAATAAAAT
* *
51122977 TCTTAATATTAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
97 TCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACTATAAAATATAA
51123042 TTTA
162 TTTA
51123046 TAATCTACTT
Statistics
Matches: 2011, Mismatches: 161, Indels: 477
0.76 0.06 0.18
Matches are distributed among these distances:
395 1 0.00
396 13 0.01
397 1 0.00
398 72 0.04
399 9 0.00
400 26 0.01
401 23 0.01
402 7 0.00
403 14 0.01
404 21 0.01
405 12 0.01
406 28 0.01
407 15 0.01
408 3 0.00
409 5 0.00
410 7 0.00
411 18 0.01
412 8 0.00
413 1 0.00
414 2 0.00
415 12 0.01
416 15 0.01
417 5 0.00
418 2 0.00
420 4 0.00
421 5 0.00
422 14 0.01
423 12 0.01
424 46 0.02
425 3 0.00
426 3 0.00
427 208 0.10
428 33 0.02
429 1 0.00
430 6 0.00
431 9 0.00
432 8 0.00
434 9 0.00
435 8 0.00
436 4 0.00
437 3 0.00
438 6 0.00
439 5 0.00
440 7 0.00
441 10 0.00
442 32 0.02
443 23 0.01
444 116 0.06
445 21 0.01
446 20 0.01
447 3 0.00
448 3 0.00
449 14 0.01
450 16 0.01
451 17 0.01
452 7 0.00
453 19 0.01
454 14 0.01
455 5 0.00
456 76 0.04
457 16 0.01
458 1 0.00
459 13 0.01
460 8 0.00
461 10 0.00
462 7 0.00
463 9 0.00
464 10 0.00
465 126 0.06
466 30 0.01
467 4 0.00
468 6 0.00
469 18 0.01
470 11 0.01
471 4 0.00
472 2 0.00
473 113 0.06
474 1 0.00
475 39 0.02
476 1 0.00
477 157 0.08
478 7 0.00
479 142 0.07
480 91 0.05
482 7 0.00
483 5 0.00
484 3 0.00
485 5 0.00
486 10 0.00
487 10 0.00
488 2 0.00
489 4 0.00
490 8 0.00
491 9 0.00
492 7 0.00
493 5 0.00
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (422 bp):
AATTTAATAAAATCATAATATATAATACTATAAAAATATAATTTAAAATAATTATCTTTAAATAT
AATTTAATAAAAATATAAAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTA
AAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATTATTAAAAATATAATTTAGT
AAAAATATATAATTTAATAAAATTATTAACATTAAATATTCTATATGAATTTAATAAAATCATAA
TATATAATACTAAAAAATATAATTTAAAATAATTAATATTAAATATAATTTAATAAAATTCTTAA
TATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAACACAATAAAATATAATTTAAA
TAATTATATTAAATATAATTTAAAACATTATT
Found at i:51121082 original size:18 final size:18
Alignment explanation
Indices: 51121032--51121069 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
51121022 AATAATTATT
51121032 AAAA-ATATAATTTAATA
1 AAAATATATAATTTAATA
51121049 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
51121067 AAA
1 AAA
51121070 TTTTTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
AAAATATATAATTTAATA
Found at i:51121138 original size:38 final size:38
Alignment explanation
Indices: 51121091--51121647 Score: 155
Period size: 38 Copynumber: 14.4 Consensus size: 38
51121081 AAATATTCTT
*
51121091 ATATGAATTTAATAAAATCATAATATATACTACTATAAA
1 ATAT-AATTTAATAAAATCATAATATATAATACTATAAA
51121130 ATATAA-TT--T-AAA--ATAAT-TAT--TA-T-T-AA
1 ATATAATTTAATAAAATCATAATATATAATACTATAAA
* * * *
51121156 ATATAATTTAATAAAATTCTTAATAT-TAAATATTCTTAA
1 ATATAATTTAATAAAA-TCATAATATAT-AATACTATAAA
* *
51121195 AT-GAATTTACTAAAATCATAATATATAATACTATAAA
1 ATATAATTTAATAAAATCATAATATATAATACTATAAA
* * * *
51121232 ATATAATTTAA-AATAATTATTAATTTAATAA-AATCATAAT
1 ATATAATTTAATAA-AATCA-TAATAT-ATAATACT-ATAAA
* * * * *
51121272 ATATAATACT-ATGAAAT-ATAATTTAAAATAATTATTATTAA
1 ATATAAT-TTAATAAAATCATAA--T-ATATAA-TACTATAAA
* * * * *
51121313 ATATAATTTAATAAAATTCTTCATAT-TAAATATTCTTAA
1 ATATAATTTAATAAAA-TCATAATATAT-AATACTATAAA
* *
51121352 AT-GAATTTACTAAAATCATAATATATAATACTATAAA
1 ATATAATTTAATAAAATCATAATATATAATACTATAAA
* * * *
51121389 ATATAATTTAA-AATAAT--TATTAT-TAAAAATATAAT
1 ATATAATTTAATAA-AATCATAATATATAATACTATAAA
* ** ** * *
51121424 TTAGTAAAAATATATAATTTGATAAAATTATTAATA-T-TAAA
1 ATA-T-AATTTA-ATAAAATCATAATA-TA-TAATACTATAAA
* *
51121465 TATTCTTAGAATTTACTAAAATCATAATATATAATACTATAAA
1 -A----TATAATTTAATAAAATCATAATATATAATACTATAAA
* * * *
51121508 ATATAATTTAAAATAATAATTATTAAAAATATAATTTAGTAAAAA
1 ATATAATTT--AATAA-AATCA-T-AATATATAA--TACTATAAA
* ***
51121553 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 -ATATAATTTAATAAAA-TCATAATATATAATACTA-TAAA
*
51121591 ATATGAATTTACTAAAATCATAATATATAATACTATAAAAA
1 ATAT-AATTTAATAAAATCATAATATATAATACTAT--AAA
*
51121632 ATATAATTTATTAAAA
1 ATATAATTTAATAAAA
51121648 ATATATAATT
Statistics
Matches: 376, Mismatches: 76, Indels: 131
0.64 0.13 0.22
Matches are distributed among these distances:
26 8 0.02
27 3 0.01
28 1 0.00
29 3 0.01
30 3 0.01
31 3 0.01
32 5 0.01
33 5 0.01
34 4 0.01
35 12 0.03
36 8 0.02
37 60 0.16
38 73 0.19
39 31 0.08
40 48 0.13
41 38 0.10
42 13 0.03
43 30 0.08
44 10 0.03
45 7 0.02
46 11 0.03
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (38 bp):
ATATAATTTAATAAAATCATAATATATAATACTATAAA
Found at i:51121168 original size:102 final size:102
Alignment explanation
Indices: 51121054--51121253 Score: 364
Period size: 102 Copynumber: 2.0 Consensus size: 102
51121044 TAATAAAAAT
* *
51121054 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
*
51121119 ACTACTATAAAATATAATTTAAAATAATTATTATTAA
66 AATACTATAAAATATAATTTAAAATAATTATTATTAA
*
51121156 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATAT
1 ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
51121221 AATACTATAAAATATAATTTAAAATAATTATTA
66 AATACTATAAAATATAATTTAAAATAATTATTA
51121254 ATTTAATAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 94 1.00
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (102 bp):
ATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTAATAAAATCATAATATAT
AATACTATAAAATATAATTTAAAATAATTATTATTAA
Found at i:51121264 original size:55 final size:55
Alignment explanation
Indices: 51121198--51121410 Score: 230
Period size: 55 Copynumber: 4.0 Consensus size: 55
51121188 TTCTTAAATG
*
51121198 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
1 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
*
51121253 AATTTAATAAAATCATAATATATAATACTATGAAATATAATTTAAAATAATTATT
1 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
* * * * * * ** *
51121308 -ATTAAATATAAT-TTAATA-A-AATTCT-TCATAT-TAAATATT--CTTAA--ATG
1 AATTTAATAAAATCATAATATATAATACTATAAAATAT-AAT-TTAAAATAATTATT
*
51121355 AATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
1 AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
51121410 A
1 A
51121411 TTAAAAATAT
Statistics
Matches: 125, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
47 2 0.02
48 9 0.07
49 9 0.07
50 8 0.06
51 14 0.11
52 8 0.06
53 9 0.07
54 10 0.08
55 56 0.45
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (55 bp):
AATTTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT
Found at i:51121289 original size:102 final size:102
Alignment explanation
Indices: 51121062--51121290 Score: 300
Period size: 102 Copynumber: 2.2 Consensus size: 102
51121052 ATATATAATT
** * * *
51121062 TAATAAAATTTTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATATACTACTAT
1 TAATAAAATTAATAATATGAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTAT
* *
51121127 AAAATATAATTTAAAATAATTATTATTAAATATAATT
66 AAAATATAATTTAAAATAATTATTATTAAATAAAATA
** * *
51121164 TAATAAAATTCTTAATATTAAATATTCTTAAATGAATTTACTAAAATCATAATATATAATACTAT
1 TAATAAAATTAATAATATGAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTAT
*
51121229 AAAATATAATTTAAAATAATTATTAATTTAATAAAATCA
66 AAAATATAATTTAAAATAATTATT-ATTAAATAAAAT-A
* *
51121268 TAAT-ATA-TAATACTATGAAATAT
1 TAATAAAATTAATAATATGAAATAT
51121291 AATTTAAAAT
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
102 97 0.86
103 12 0.11
104 4 0.04
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (102 bp):
TAATAAAATTAATAATATGAAATATTCTTAAATGAATTTAATAAAATCATAATATATAATACTAT
AAAATATAATTTAAAATAATTATTATTAAATAAAATA
Found at i:51121538 original size:16 final size:16
Alignment explanation
Indices: 51121517--51121561 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
51121507 AATATAATTT
*
51121517 AAAATAATAATTATTA
1 AAAATAATAATTAGTA
51121533 AAAAT-ATAATTTAGTA
1 AAAATAATAA-TTAGTA
51121549 AAAATATATAATT
1 AAAATA-ATAATT
51121562 TAATAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 4 0.16
16 15 0.60
17 2 0.08
18 4 0.16
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATAATAATTAGTA
Found at i:51121557 original size:18 final size:17
Alignment explanation
Indices: 51121532--51121569 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
51121522 AATAATTATT
*
51121532 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
51121549 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
51121567 AAA
1 AAA
51121570 TTCTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:51121630 original size:95 final size:94
Alignment explanation
Indices: 51121531--51121735 Score: 374
Period size: 95 Copynumber: 2.2 Consensus size: 94
51121521 TAATAATTAT
51121531 TAAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATG
1 TAAAAATATAATTTAGTAAAAATATATAA-TTAATAAAATTCTTAATATTAAATATTCTTATATG
*
51121596 AATTTACTAAAATCATAATATATAATACTA
65 AATTTAATAAAATCATAATATATAATACTA
*
51121626 TAAAAAATATAATTTATTAAAAATATATAATTAATAAAATTCTTAATATTAAATATTCTTATATG
1 T-AAAAATATAATTTAGTAAAAATATATAATTAATAAAATTCTTAATATTAAATATTCTTATATG
51121691 AATTTAATAAAATCATAATATATAATACTA
65 AATTTAATAAAATCATAATATATAATACTA
51121721 TAAAAATATAATTTA
1 TAAAAATATAATTTA
51121736 AAATAATTAT
Statistics
Matches: 107, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
94 14 0.13
95 66 0.62
96 27 0.25
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (94 bp):
TAAAAATATAATTTAGTAAAAATATATAATTAATAAAATTCTTAATATTAAATATTCTTATATGA
ATTTAATAAAATCATAATATATAATACTA
Found at i:51121663 original size:17 final size:17
Alignment explanation
Indices: 51121612--51121664 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
51121602 CTAAAATCAT
51121612 AATATATAA-TACTATAAA
1 AATATATAATTA--ATAAA
*
51121630 AA-ATATAATTTATTAAA
1 AATATATAA-TTAATAAA
51121647 AATATATAATTAATAAA
1 AATATATAATTAATAAA
51121664 A
1 A
51121665 TTCTTAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 20 0.67
18 8 0.27
19 2 0.07
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
AATATATAATTAATAAA
Found at i:51121794 original size:95 final size:94
Alignment explanation
Indices: 51121532--51121787 Score: 288
Period size: 95 Copynumber: 2.7 Consensus size: 94
51121522 AATAATTATT
* * * * *
51121532 AAAAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGA
1 AAAAATATAATTTA-TAAAAATATATAA-TTAATAAAATTATTAAAAATAAATATTCTAATATAA
*
51121597 ATTTACTAAAATCATAATATATAATACTATA
64 ATTTAATAAAATCATAATATATAATACTATA
* * * * *
51121628 AAAAATATAATTTATTAAAAATATATAATTAATAAAATTCTTAATATTAAATATTCTTATATGAA
1 AAAAATATAATTTA-TAAAAATATATAATTAATAAAATTATTAAAAATAAATATTCTAATATAAA
51121693 TTTAATAAAATCATAATATATAATACTAT-
65 TTTAATAAAATCATAATATATAATACTATA
* * *
51121722 AAAAATATAATTTA-AAATAAT-TATTATTAAATATAATTTATTAAAAATATATAATT-TAATA-
1 AAAAATATAATTTATAAA-AATATATAATT-AATA-AAATTATTAAAAATAAAT-ATTCTAATAT
51121783 AAATT
62 AAATT
51121788 CTTAATATTA
Statistics
Matches: 146, Mismatches: 10, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
92 9 0.06
93 11 0.08
94 31 0.21
95 68 0.47
96 27 0.18
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (94 bp):
AAAAATATAATTTATAAAAATATATAATTAATAAAATTATTAAAAATAAATATTCTAATATAAAT
TTAATAAAATCATAATATATAATACTATA
Found at i:51121881 original size:18 final size:16
Alignment explanation
Indices: 51121837--51121894 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
51121827 GAATATATAA
51121837 TACTATAAAATATAATT
1 TACTA-AAAATATAATT
51121854 TA--AAATAAT-T-A-T
1 TACTAAA-AATATAATT
51121866 TACTAAAAATATAATT
1 TACTAAAAATATAATT
*
51121882 TAGTAAAAATATA
1 TACTAAAAATATA
51121895 TAATTTCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
12 3 0.09
13 4 0.12
14 7 0.21
15 5 0.15
16 13 0.38
17 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (16 bp):
TACTAAAAATATAATT
Found at i:51122116 original size:43 final size:39
Alignment explanation
Indices: 51121686--51123045 Score: 529
Period size: 38 Copynumber: 34.3 Consensus size: 39
51121676 AAATATTCTT
*
51121686 ATATGAATTTAATAAAATCA-TAATATATAATACTATAAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTAT-AAA
* * *
51121726 ATATAATTTAA-AATAATTATTATTAAATATAATTTATTAAAAA
1 ATATAATTTAATAA-AATTATTA--ATATATAA--TACTATAAA
* * * *
51121769 TATATAATTTAATAAAATTCTTAATAT-TAAATATTCTTAA
1 -ATATAATTTAATAAAATTATTAATATAT-AATACTATAAA
* * * *
51121809 AT-GAATTTACTAAAATCA-GAATATATAATACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51121846 ATATAATTTAA-AATAATTATTACTAAAAATATAATTTAGTAAAAA
1 ATATAATTTAATAA-AATTA-T--T-AATATATAA--TACTATAAA
* * ***
51121891 TATATAATTTCATAAAATTCTTAATAT-TAA-A-TATTCT
1 -ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51121928 A-AGAATTTACTAAAATCA-TAATATATAATACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* *
51121965 ATATAATTTAA-AATAATTATCATTAAAATATAAT-TTAGTAAAA
1 ATATAATTTAATAA-AA-T-T-ATTAATATATAATACTA-T-AAA
* * ***
51122008 GTATATAAGTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 --ATATAATTTAATAAAATTATTAATATATAATACTA-TAAA
* *
51122047 ATATGAATTTACTAAAATCA-TAATATATAATACTATAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTATAAA
* *
51122086 ATATAATTTAA-AATAATTATTATTAAATATAAT-TTATTAAAA
1 ATATAATTTAATAA-AATTATTA--ATATATAATACTA-T-AAA
* ***
51122128 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 -ATATAATTTAATAAAATTATTAATATATAATACTA-TAAA
*
51122166 ATATGAATTTAATAAAATCA-TAATATATAATACTATAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51122205 ATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAAA
1 ATATAATTTAATAA-AATTATTA--ATATATAA--TACTATAAA
* * * * *
51122248 TATATAATTTAATGAAATTCTTAATAT-TAAATATTCTTAA
1 -ATATAATTTAATAAAATTATTAATATAT-AATACTATAAA
** *
51122288 AT-GGATTTAATAAAATCA-TAATATATAATACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * * *
51122325 ATATAATTTAAAATAATTATTATTAAAAATATAATTTAGTAAAAA
1 ATATAATTT--AATAA-AATTATT-AATATATAA--TACTATAAA
** **
51122370 TATATAATTTAATAAAATGCTTAATAT-TAA-A-TAT-TC
1 -ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * * *
51122406 TTAGAATTTACTAAAATCA-TAATATATAATACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51122444 ATATAATTTAA-ATTAATTATTTTAA-ATATAATTTAATAAAAA
1 ATATAATTTAATA-AAATTA--TTAATATATAA--TACTATAAA
* * * *
51122486 TATATAATTTAATAAAATTCTTAATAT-TAAATATTCTTAA
1 -ATATAATTTAATAAAATTATTAATATAT-AATACTATAAA
* * * *
51122526 AT-GAATTTACTAAAATCA-TAATATATAACACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51122563 ATATAATTTAAAATAATAATTATTAAAAATATAATTTAGTAAAAA
1 ATATAATTT--AATAA-AATTATT-AATATATAA--TACTATAAA
* ***
51122608 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 -ATATAATTTAATAAAATTATTAATATATAATACTA-TAAA
* * *
51122646 ATATGAGTTTACTAAAATCA-TAATATATAATACTATAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51122685 ATATAATTAAAATAATTATTATTAA-ATATAATTATTA-AAA
1 ATATAATT-TAATAA-AATTATTAATATATAA-TACTATAAA
* ***
51122725 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 -ATATAATTTAATAAAATTATTAATATATAATACTA-TAAA
*
51122763 ATATGAATTTAATAAAATCA-T-A-ATATAATACTATAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTATAAA
* * *
51122800 ATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAAA
1 ATATAATTTAATAA-AATTATTA--ATATATAA--TACTATAAA
* **
51122843 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TAT-TC
1 -ATATAATTTAATAAAATTATTAATATATAATACTATAAA
* * * *
51122879 TTAGAATTTACTAAAATCA-TAATATATAATACTATAAA
1 ATATAATTTAATAAAATTATTAATATATAATACTATAAA
** * *
51122917 ATATAATTTAAATTAGTTATTTTTAA-ATATAAT-TTAATAAAA
1 ATATAATTT-AA-TA-AAATTATTAATATATAATACT-AT-AAA
* ***
51122959 TATATAATTTAATAAAATTCTTAATAT-TAA-A-TATTCTT
1 -ATATAATTTAATAAAATTATTAATATATAATACTA-TAAA
* *
51122997 ATATGAATTTACTAAAATCA-TAATATATAATACTATAAA
1 ATAT-AATTTAATAAAATTATTAATATATAATACTATAAA
51123036 ATATAATTTA
1 ATATAATTTA
51123046 TAATCTACTT
Statistics
Matches: 974, Mismatches: 205, Indels: 284
0.67 0.14 0.19
Matches are distributed among these distances:
34 18 0.02
35 53 0.05
36 21 0.02
37 126 0.13
38 196 0.20
39 67 0.07
40 86 0.09
41 90 0.09
42 73 0.07
43 98 0.10
44 72 0.07
45 38 0.04
46 34 0.03
47 2 0.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (39 bp):
ATATAATTTAATAAAATTATTAATATATAATACTATAAA
Found at i:51122124 original size:17 final size:17
Alignment explanation
Indices: 51122093--51122138 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
51122083 AAAATATAAT
51122093 TTAAA-ATAA-TTATTA
1 TTAAATATAATTTATTA
51122108 TTAAATATAATTTATTA
1 TTAAATATAATTTATTA
*
51122125 -AAATATATAATTTA
1 TTAA-ATATAATTTA
51122139 ATAAAATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 5 0.19
16 6 0.22
17 16 0.59
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAAATATAATTTATTA
Found at i:51122143 original size:17 final size:17
Alignment explanation
Indices: 51122112--51122145 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51122102 TTATTATTAA
*
51122112 ATATAATTTATTAAAAT
1 ATATAATTTAATAAAAT
51122129 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51122146 TCTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51122368 original size:15 final size:16
Alignment explanation
Indices: 51122322--51122386 Score: 57
Period size: 18 Copynumber: 4.2 Consensus size: 16
51122312 ATAATACTAT
51122322 AAAATATAATTTAA-A
1 AAAATATAATTTAATA
* *
51122337 ATAAT-T-A-TTATTA
1 AAAATATAATTTAATA
*
51122350 AAAATATAATTTAGTAA
1 AAAATATAATTTAAT-A
51122367 AAATATATAATTTAATA
1 AAA-ATATAATTTAATA
51122384 AAA
1 AAA
51122387 TGCTTAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
12 3 0.08
13 6 0.15
14 2 0.05
15 5 0.13
16 4 0.10
17 8 0.21
18 11 0.28
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATATAATTTAATA
Found at i:51122374 original size:18 final size:17
Alignment explanation
Indices: 51122349--51122386 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
51122339 AATTATTATT
*
51122349 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
51122366 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
51122384 AAA
1 AAA
51122387 TGCTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:51122580 original size:15 final size:14
Alignment explanation
Indices: 51122560--51122625 Score: 53
Period size: 15 Copynumber: 4.4 Consensus size: 14
51122550 ATAACACTAT
51122560 AAAATATAATTTAA
1 AAAATATAATTTAA
* *
51122574 AATA-ATAATTATTA
1 AAAATATAATT-TAA
51122588 AAAATATAATTTAGTAA
1 AAAATATAA-TT--TAA
51122605 AAATATATAATTTAA
1 AAA-ATATAATTTAA
51122620 TAAAAT
1 -AAAAT
51122626 TCTTAATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
13 6 0.15
14 8 0.20
15 9 0.22
16 5 0.12
17 7 0.17
18 6 0.15
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
AAAATATAATTTAA
Found at i:51122593 original size:16 final size:16
Alignment explanation
Indices: 51122572--51122616 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
51122562 AATATAATTT
*
51122572 AAAATAATAATTATTA
1 AAAATAATAATTAGTA
51122588 AAAAT-ATAATTTAGTA
1 AAAATAATAA-TTAGTA
51122604 AAAATATATAATT
1 AAAATA-ATAATT
51122617 TAATAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 4 0.16
16 15 0.60
17 2 0.08
18 4 0.16
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (16 bp):
AAAATAATAATTAGTA
Found at i:51122612 original size:18 final size:17
Alignment explanation
Indices: 51122587--51122624 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
51122577 AATAATTATT
*
51122587 AAAAATATAATTTAGTA
1 AAAAATATAATTTAATA
51122604 AAAATATATAATTTAATA
1 AAAA-ATATAATTTAATA
51122622 AAA
1 AAA
51122625 TTCTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAAATATAATTTAATA
Found at i:51122715 original size:16 final size:15
Alignment explanation
Indices: 51122690--51122721 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
51122680 ATAAAATATA
51122690 ATTAAAATAATTATT
1 ATTAAAATAATTATT
51122705 ATTAAATATAATTATT
1 ATTAAA-ATAATTATT
51122721 A
1 A
51122722 AAATATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAAATAATTATT
Found at i:51122725 original size:14 final size:14
Alignment explanation
Indices: 51122690--51122728 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
51122680 ATAAAATATA
*
51122690 ATTAAAATAATTATT
1 ATTAAAAT-ATAATT
51122705 ATT-AAATATAATT
1 ATTAAAATATAATT
51122718 ATTAAAATATA
1 ATTAAAATATA
51122729 TAATTTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 8 0.36
14 11 0.50
15 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTAAAATATAATT
Found at i:51122729 original size:16 final size:16
Alignment explanation
Indices: 51122696--51122742 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
51122686 TATAATTAAA
*
51122696 ATAATTATTATTAAAT
1 ATAATTATTATAAAAT
51122712 ATAATTATTA-AAATAT
1 ATAATTATTATAAA-AT
*
51122728 ATAATT-TAATAAAAT
1 ATAATTATTATAAAAT
51122743 TCTTAATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAATTATTATAAAAT
Found at i:51122748 original size:26 final size:28
Alignment explanation
Indices: 51122680--51122748 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
51122670 ATATAATACT
*
51122680 ATAAAATATAATTAAAATAATTATTATTAA
1 ATAAAAT-T-ATTAAAATAATTATAATTAA
* *
51122710 ATATAATTATTAAAAT-A-TATAATTTA
1 ATAAAATTATTAAAATAATTATAATTAA
*
51122736 ATAAAATTCTTAA
1 ATAAAATTATTAA
51122749 TATTAAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.53
27 1 0.03
28 8 0.24
29 1 0.03
30 6 0.18
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAAAATTATTAAAATAATTATAATTAA
Found at i:51122983 original size:17 final size:17
Alignment explanation
Indices: 51122943--51122976 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51122933 TTATTTTTAA
51122943 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51122960 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
51122977 TCTTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51123045 original size:119 final size:120
Alignment explanation
Indices: 51121630--51123045 Score: 2283
Period size: 119 Copynumber: 11.9 Consensus size: 120
51121620 ATACTATAAA
*
51121630 AAATATAATTTATTAAAAATATATAA-TTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51121694 TTAATAAAATCATAATATATAATACTATAAAAATATAATTTAAAATAATTATTATT
66 TTACTAAAATCATAATATATAATACTAT-AAAATATAATTTAAAATAATTATTTTT
* *
51121750 AAATATAATTTATTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* **
51121815 TTACTAAAATCAGAATATATAATACTATAAAATATAATTTAAAATAATTATTACTAA
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT--TTT
* *
51121872 AAATATAATTTAGTAAAAATATATAATTTCATAAAATTCTTAATATTAAATATTC-TA-A-GAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51121934 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATCATTA
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTAT-TTTT
* * *
51121990 AAATATAATTTAGTAAAAGTATATAAGTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
*
51122055 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
*
51122110 AAATATAATTT-ATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51122174 TTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
* * *
51122229 AAATATAATTTAATAAAAATATATAATTTAATGAAATTCTTAATATTAAATATTCTTAAATGGAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51122294 TTAATAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAA
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT-TT-T
* *
51122351 AAATATAATTTAGTAAAAATATATAATTTAATAAAATGCTTAATATTAAATATTC-T-TA-GAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
*
51122413 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAATTAATTA-TTTT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
*
51122467 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTAAATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* * *
51122532 TTACTAAAATCATAATATATAACACTATAAAATATAATTTAAAATAATAATTATTAA
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATT-TT-T
* *
51122589 AAATATAATTTAGTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAGT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
*
51122654 TTACTAAAATCATAATATATAATACTATAAAATATAA-TTAAAATAATTATTATT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
*
51122708 AAATATAA-TT-ATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51122771 TTAATAAAATCAT-A-ATATAATACTATAAAATATAATTTAAAATAATTATTATT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
51122824 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC-T-TA-GAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
* *
51122886 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAATTAGTTATTTTT
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
51122941 AAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
1 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
51123005 TTACTAAAATCATAATATATAATACTATAAAATATAATTTA
66 TTACTAAAATCATAATATATAATACTATAAAATATAATTTA
51123046 TAATCTACTT
Statistics
Matches: 1213, Mismatches: 59, Indels: 49
0.92 0.04 0.04
Matches are distributed among these distances:
115 37 0.03
116 122 0.10
117 119 0.10
118 102 0.08
119 325 0.27
120 168 0.14
121 137 0.11
122 203 0.17
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (120 bp):
AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAAT
TTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATTTTT
Found at i:51124488 original size:49 final size:49
Alignment explanation
Indices: 51124432--51124535 Score: 181
Period size: 49 Copynumber: 2.1 Consensus size: 49
51124422 GAAAAAAAAC
* * *
51124432 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
51124481 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
51124530 AAATTA
1 AAATTA
51124536 TAACACATGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.50, C:0.11, G:0.08, T:0.32
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTTTATA
Found at i:51128145 original size:22 final size:22
Alignment explanation
Indices: 51128120--51128161 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
51128110 TAAGAAAACG
51128120 ATGGAAGAAGAAGCAGAAATCA
1 ATGGAAGAAGAAGCAGAAATCA
51128142 ATGGAAGAAGAAGCAGAAAT
1 ATGGAAGAAGAAGCAGAAAT
51128162 TACCTCTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.55, C:0.07, G:0.29, T:0.10
Consensus pattern (22 bp):
ATGGAAGAAGAAGCAGAAATCA
Found at i:51133821 original size:18 final size:17
Alignment explanation
Indices: 51133784--51133822 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
51133774 TCGTCTACCC
* *
51133784 ATTAGTTTTTAATATTA
1 ATTAGTTTTTAAAATAA
51133801 ATTAGTTTTTAAAACTAA
1 ATTAGTTTTTAAAA-TAA
51133819 ATTA
1 ATTA
51133823 TTAGTCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (17 bp):
ATTAGTTTTTAAAATAA
Found at i:51138233 original size:18 final size:19
Alignment explanation
Indices: 51138211--51138250 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
51138201 CGGTATTTCA
*
51138211 AAAAATATCGATACTTAAT
1 AAAAGTATCGATACTTAAT
51138230 AAAATGGTATCGATACTTAAT
1 AAAA--GTATCGATACTTAAT
51138251 GAGTTTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
21 14 0.78
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (19 bp):
AAAAGTATCGATACTTAAT
Found at i:51141192 original size:25 final size:26
Alignment explanation
Indices: 51141158--51141209 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
51141148 TTGTTTGTGG
** *
51141158 TTTACGGGTTTAATTTTTATGGTTAA
1 TTTACGGGTTTAAGATTTACGGTTAA
51141184 TTTA-GGGTTTAAGATTTACGGTTAA
1 TTTACGGGTTTAAGATTTACGGTTAA
51141209 T
1 T
51141210 GCGTACTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.25, C:0.04, G:0.21, T:0.50
Consensus pattern (26 bp):
TTTACGGGTTTAAGATTTACGGTTAA
Found at i:51142545 original size:16 final size:16
Alignment explanation
Indices: 51142524--51142555 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51142514 ACTTAGTAAT
51142524 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
51142540 TAAAAGATACAGTTAA
1 TAAAAGATACAGTTAA
51142556 GAAATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.25
Consensus pattern (16 bp):
TAAAAGATACAGTTAA
Found at i:51142900 original size:13 final size:12
Alignment explanation
Indices: 51142867--51142901 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
51142857 AACTTAGCCG
*
51142867 AAATTCCCCCCA
1 AAATTCTCCCCA
51142879 AAATTCTCCCCA
1 AAATTCTCCCCA
51142891 AAATTGCTCCC
1 AAATT-CTCCC
51142902 GATTTTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.43, G:0.03, T:0.23
Consensus pattern (12 bp):
AAATTCTCCCCA
Found at i:51143626 original size:47 final size:47
Alignment explanation
Indices: 51143557--51143650 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
51143547 TGCTTTGATT
*
51143557 CCCCTTCCAAAAGATAATTTAGGGCTTGATTAATGCATATGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
* * * *
51143604 CCCCTTCTAAAATATAATTTAGGATTTGATTAATGCATGTGGAGGTG
1 CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
51143651 GTCTAGTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
CCCCTTCCAAAAGATAATTTAGGACTTGATTAATGCATATGGAGGTG
Found at i:51145250 original size:21 final size:21
Alignment explanation
Indices: 51145224--51145274 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
51145214 CTACAACTTA
* *
51145224 AAGCAGATGCGGCAGCGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
51145245 AAGCAGAGGCAGCAGCGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
*
51145266 AAGCTGAGG
1 AAGCAGAGG
51145275 TTCAACGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.18, G:0.43, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCGAGAG
Found at i:51145311 original size:87 final size:87
Alignment explanation
Indices: 51145174--51145341 Score: 259
Period size: 87 Copynumber: 1.9 Consensus size: 87
51145164 AGGCAACATT
51145174 GAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCAG
1 GAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCAG
51145239 CGAGAGAAGCAGAGGCAGCAGC
66 CGAGAGAAGCAGAGGCAGCAGC
* * * *
51145261 GAGAGAAGCTGAGGTTCAACGAAAG-TATGAAGAACTCTAGC-AGCAGCTTAAAGTAGATGCGGC
1 GAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGCTA-CAACTTAAAGCAGATGCGGC
*
51145324 AGTGAGAGAAGCAGAGGC
64 AGCGAGAGAAGCAGAGGC
51145342 TAAAGCGAAG
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
86 1 0.01
87 69 0.93
88 4 0.05
ACGTcount: A:0.39, C:0.17, G:0.32, T:0.13
Consensus pattern (87 bp):
GAGAGAAGCTGAGGTTCAAAAAAGATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCAG
CGAGAGAAGCAGAGGCAGCAGC
Found at i:51145800 original size:43 final size:42
Alignment explanation
Indices: 51145686--51145990 Score: 405
Period size: 43 Copynumber: 7.1 Consensus size: 42
51145676 CAAAATTAGC
* *
51145686 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGT
1 GGCG-TTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * * *
51145729 GGCGTTTTTTCCTAAGCGCCGCGAAAGACCATGGTCTATAAT
1 GGCGTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* *
51145771 GACGTTTTTCGCCTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTTTT-GCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
51145814 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTT-TTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
*
51145857 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGT
1 GGCGTTT-TTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
* * *
51145900 GGCGTTTTTTG-GTAAGCGCCGCTAAATACCACGGTCTATAGT
1 GGCG-TTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
** *
51145942 GGCGTTTTTATTTTAAGCGCCGCTAAAGACCATGGTCTATAGC
1 GGCGTTTTT-GCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
51145985 GGCGTT
1 GGCGTT
51145991 GTAAAAAAAA
Statistics
Matches: 237, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
41 5 0.02
42 73 0.31
43 154 0.65
44 5 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (42 bp):
GGCGTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGT
Found at i:51145916 original size:128 final size:128
Alignment explanation
Indices: 51145699--51145990 Score: 426
Period size: 128 Copynumber: 2.3 Consensus size: 128
51145689 GTTTTTTGCA
* *
51145699 TAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTTTTTCCTAAGCGCCGCGAAAGACCATGGT
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTGCCTAAGCGCCGCGAAAGACCATGGT
*
51145764 CTATAATGACGTTTTTCGCCTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTGTT-GGT
66 CTATAATGACGTTTTTCGCCTAAGCGCCGCTAAAGACCACGGTCTATAGTGGCGTTT-TTAGGT
** *
51145827 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTT-TTGCCTAAGCGCCGCGAAAGACCATGG
* * * * * **
51145892 TCTATAGTGGCGTTTTTTG-GTAAGCGCCGCTAAATACCACGGTCTATAGTGGCGTTTTTATTT
65 TCTATAATGACGTTTTTCGCCTAAGCGCCGCTAAAGACCACGGTCTATAGTGGCGTTTTTAGGT
*
51145955 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTT
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTT
51145991 GTAAAAAAAA
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
127 2 0.01
128 107 0.72
129 39 0.26
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (128 bp):
TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTGCCTAAGCGCCGCGAAAGACCATGGT
CTATAATGACGTTTTTCGCCTAAGCGCCGCTAAAGACCACGGTCTATAGTGGCGTTTTTAGGT
Found at i:51145964 original size:85 final size:84
Alignment explanation
Indices: 51145686--51145990 Score: 430
Period size: 85 Copynumber: 3.6 Consensus size: 84
51145676 CAAAATTAGC
* * **
51145686 GGCGTTTTTTGCATAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTTTTTCCTAAGCGCCGC
1 GGCG-TTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGTAAGCGCCGC
* *
51145751 GAAAGACCATGGTCTATAAT
65 TAAAGACCATGGTCTATAGT
* * *
51145771 GACGTTTTTCGCCTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTGTTGGTTAAGCGCCG
1 GGCGTTTTT-GCTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGG-TAAGCGCCG
51145836 CTAAAGACCATGGTCTATAGT
64 CTAAAGACCATGGTCTATAGT
*
51145857 GGCGTTTGTTGGTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGTAAGCGCCGC
1 GGCGTTT-TTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGTAAGCGCCGC
* *
51145922 TAAATACCACGGTCTATAGT
65 TAAAGACCATGGTCTATAGT
** *
51145942 GGCGTTTTTATTTTAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTT
1 GGCGTTTTT-GCTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTT
51145991 GTAAAAAAAA
Statistics
Matches: 199, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
84 7 0.04
85 114 0.57
86 76 0.38
87 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (84 bp):
GGCGTTTTTGCTTAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGTAAGCGCCGCT
AAAGACCATGGTCTATAGT
Found at i:51146031 original size:85 final size:87
Alignment explanation
Indices: 51145699--51146038 Score: 354
Period size: 85 Copynumber: 4.0 Consensus size: 87
51145689 GTTTTTTGCA
* * *** *
51145699 TAAGCGCCACTAAAGACCATGGTCTATAGTGGCGTTTTTTCCTAAGCGCCGCGAAAG-ACCATGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTGTTAGATAAGCGCCGCTAAAGTACCATGG
* * * *
51145763 TCTATAATGACGTTT-TT-CGCC
66 TCTATAGTGGCGTTTATTATG-T
* *
51145784 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTGTTGGTTAAGCGCCGCTAAAG-ACCATG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCG-TTGTTAGATAAGCGCCGCTAAAGTACCATG
* *
51145848 GTCTATAGTGGCGTTTGTT-GGT
65 GTCTATAGTGGCGTTTATTATGT
* * * *
51145870 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGTAAGCGCCGCTAAA-TACCACGG
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTGTTAGATAAGCGCCGCTAAAGTACCATGG
*
51145934 TCTATAGTGGCGTTT-TTATTT
66 TCTATAGTGGCGTTTATTATGT
* * * * * * *
51145955 TAAGCGCCGCTAAAGACCATGGTCTATAGCGGCGTTGTAAAAAAAACGCCGCTAAAGTTCC-TGA
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTGTTAGATAAGCGCCGCTAAAGTACCATGG
* *
51146019 TCTTTAGCGGCGTTTATTAT
66 TCTATAGTGGCGTTTATTAT
51146039 AGAAAGTGCC
Statistics
Matches: 220, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
84 2 0.01
85 136 0.62
86 79 0.36
87 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (87 bp):
TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTGTTAGATAAGCGCCGCTAAAGTACCATGG
TCTATAGTGGCGTTTATTATGT
Found at i:51146137 original size:22 final size:21
Alignment explanation
Indices: 51146092--51146134 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
51146082 CTTTGCGGCG
*
51146092 CTAAAAAACGCCGCTATAGAC
1 CTAAAAAACGCCGCTATAAAC
51146113 CTAAAAAAGCGCCGCTA-AAAC
1 CTAAAAAA-CGCCGCTATAAAC
51146134 C
1 C
51146135 CTATTTTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.44, C:0.30, G:0.14, T:0.12
Consensus pattern (21 bp):
CTAAAAAACGCCGCTATAAAC
Found at i:51147211 original size:21 final size:21
Alignment explanation
Indices: 51147177--51147234 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
51147167 TTAATAAAAC
*
51147177 TAAAA-TTAATAAAACATAT-T
1 TAAAATTTTATAAAA-ATATAT
*
51147197 TAAAATTTTATAAAAATGTAT
1 TAAAATTTTATAAAAATATAT
*
51147218 TAAAATTCTATAAAAAT
1 TAAAATTTTATAAAAAT
51147235 CATAAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.24
21 25 0.76
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (21 bp):
TAAAATTTTATAAAAATATAT
Found at i:51147260 original size:8 final size:9
Alignment explanation
Indices: 51147204--51147279 Score: 55
Period size: 9 Copynumber: 8.0 Consensus size: 9
51147194 ATTTAAAATT
*
51147204 TTATAAAAA
1 TTATTAAAA
51147213 TGTATTAAAA
1 T-TATTAAAA
*
51147223 TTCTATAAAAA
1 -T-TATTAAAA
* *
51147234 TCATAAAAA
1 TTATTAAAA
51147243 TTATTAAAA
1 TTATTAAAA
*
51147252 TTATTAAAT
1 TTATTAAAA
51147261 TTGATATAAAA
1 TT-AT-TAAAA
51147272 TTA-TAAAA
1 TTATTAAAA
51147280 AAAATCTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
8 5 0.09
9 25 0.45
10 11 0.20
11 14 0.25
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (9 bp):
TTATTAAAA
Found at i:51147271 original size:29 final size:29
Alignment explanation
Indices: 51147199--51147280 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
51147189 AACATATTTA
* *
51147199 AAATTTTATAAAAATGTATTAAAATTCTAT
1 AAATTTCATAAAAAT-TATTAAAATTATAT
**
51147229 AAAAATCATAAAAATTATTAAAATTAT-T
1 AAATTTCATAAAAATTATTAAAATTATAT
* *
51147257 AAATTTGATATAAAATTATAAAAA
1 AAATTTCATA-AAAATTATTAAAA
51147281 AAATCTTAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
28 8 0.19
29 23 0.53
30 12 0.28
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
AAATTTCATAAAAATTATTAAAATTATAT
Found at i:51147816 original size:28 final size:26
Alignment explanation
Indices: 51147785--51147859 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
51147775 GTTTTATTAA
* *
51147785 TTTTGTAATTTTTATAATTTATTAGAT
1 TTTTTTAATTTTTATAATTTATAAG-T
*
51147812 TTTTTATAATTTATA-ATATTTATAAGT
1 TTTTT-TAATTTTTATA-ATTTATAAGT
51147839 TTTTTTAATATTTTATAATTT
1 TTTTTTAAT-TTTTATAATTT
51147860 TTATAATTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
26 4 0.10
27 19 0.47
28 17 0.43
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (26 bp):
TTTTTTAATTTTTATAATTTATAAGT
Found at i:51147832 original size:19 final size:19
Alignment explanation
Indices: 51147793--51147832 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51147783 AATTTTGTAA
*
51147793 TTTTTATAATTTATTAGAT
1 TTTTTATAATTTATAAGAT
*
51147812 TTTTTATAATTTATAATAT
1 TTTTTATAATTTATAAGAT
51147831 TT
1 TT
51147833 ATAAGTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
TTTTTATAATTTATAAGAT
Found at i:51147847 original size:19 final size:19
Alignment explanation
Indices: 51147821--51147878 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
51147811 TTTTTTATAA
51147821 TTTATAATATTTATAAGTT
1 TTTATAATATTTATAAGTT
*
51147840 TTTTTAATATTTTATAA-TT
1 TTTATAATA-TTTATAAGTT
51147859 TTTATAAT-TTTAGTAAGTT
1 TTTATAATATTTA-TAAGTT
51147878 T
1 T
51147879 ATATCAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 4 0.12
18 3 0.09
19 20 0.59
20 7 0.21
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTATAATATTTATAAGTT
Found at i:51148261 original size:18 final size:21
Alignment explanation
Indices: 51148225--51148262 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
51148215 ATGAGTACAC
51148225 ATTTAATATATCTTGACTTTT
1 ATTTAATATATCTTGACTTTT
51148246 ATTT-ATATAT-TT-ACTTT
1 ATTTAATATATCTTGACTTT
51148263 AATTAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 2 0.12
20 6 0.35
21 4 0.24
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (21 bp):
ATTTAATATATCTTGACTTTT
Found at i:51152429 original size:15 final size:15
Alignment explanation
Indices: 51152409--51152438 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51152399 TCATTGACAG
51152409 CAACAGCAGCAACAA
1 CAACAGCAGCAACAA
*
51152424 CAACAGTAGCAACAA
1 CAACAGCAGCAACAA
51152439 TAATAACAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.30, G:0.13, T:0.03
Consensus pattern (15 bp):
CAACAGCAGCAACAA
Found at i:51156498 original size:24 final size:24
Alignment explanation
Indices: 51156470--51156571 Score: 82
Period size: 24 Copynumber: 4.2 Consensus size: 24
51156460 GGTTCTCCAA
51156470 AGCTTCTCGATATTGGCTCGCATG
1 AGCTTCTCGATATTGGCTCGCATG
* * * *
51156494 AGCTTC-CCAAATTTGGCTCTCTTG
1 AGCTTCTCGATA-TTGGCTCGCATG
* **
51156518 AGCTTCTCGTTA-TGGCTCATATG
1 AGCTTCTCGATATTGGCTCGCATG
* * *
51156541 AGCTTCTCAATAATTAGCTCGCAAG
1 AGCTTCTCGAT-ATTGGCTCGCATG
51156566 AGCTTC
1 AGCTTC
51156572 CCGTTATACA
Statistics
Matches: 58, Mismatches: 16, Indels: 7
0.72 0.20 0.09
Matches are distributed among these distances:
23 20 0.34
24 23 0.40
25 15 0.26
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (24 bp):
AGCTTCTCGATATTGGCTCGCATG
Found at i:51156635 original size:25 final size:23
Alignment explanation
Indices: 51156563--51156635 Score: 65
Period size: 25 Copynumber: 3.0 Consensus size: 23
51156553 ATTAGCTCGC
* *
51156563 AAGAGCTTCCCGTTATACAGCTTA
1 AAGAGCTTCCCGTTATA-TGCTCA
* *
51156587 AATGAGCTTCCCGTCACATGGCTCA
1 AA-GAGCTTCCCGTTATAT-GCTCA
51156612 GAAGAGCTTCCCGATTATATGCTC
1 -AAGAGCTTCCCG-TTATATGCTC
51156636 GTATGGGCAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
24 2 0.05
25 31 0.79
26 6 0.15
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (23 bp):
AAGAGCTTCCCGTTATATGCTCA
Found at i:51159769 original size:131 final size:131
Alignment explanation
Indices: 51159611--51159872 Score: 479
Period size: 131 Copynumber: 2.0 Consensus size: 131
51159601 AAAACCTTGT
*
51159611 GTTGTTGCTTTACTTGTTGAATTCACAAAAGGATGAATTTAGTGGTGAGAGTATCGAGTTTTCAA
1 GTTGTTGCTTTACTTGTTAAATTCACAAAAGGATGAATTTAGTGGTGAGAGTATCGAGTTTTCAA
*
51159676 AGTACAAAGGTGAGGGAAATTATCATGGGGTGTGATTGAGTAGGTTCATTTTGTGCAATTGTGAA
66 AGTACAAAGGTGAGGGAAATTATCATGGGGTGTGATTGAGTAAGTTCATTTTGTGCAATTGTGAA
51159741 G
131 G
* *
51159742 GTTGTTGTTTTACTTGTTAAATTCACAAAGGGATGAATTTAGTGGTGAGAGTATCGAGTTTTCAA
1 GTTGTTGCTTTACTTGTTAAATTCACAAAAGGATGAATTTAGTGGTGAGAGTATCGAGTTTTCAA
*
51159807 AGTACAAATGTGAGGGAAATTATCATGGGGTGTGATTGAGTAAGTTCATTTTGTGCAATTGTGAA
66 AGTACAAAGGTGAGGGAAATTATCATGGGGTGTGATTGAGTAAGTTCATTTTGTGCAATTGTGAA
51159872 G
131 G
51159873 AGAGTAGATA
Statistics
Matches: 126, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 126 1.00
ACGTcount: A:0.29, C:0.07, G:0.28, T:0.36
Consensus pattern (131 bp):
GTTGTTGCTTTACTTGTTAAATTCACAAAAGGATGAATTTAGTGGTGAGAGTATCGAGTTTTCAA
AGTACAAAGGTGAGGGAAATTATCATGGGGTGTGATTGAGTAAGTTCATTTTGTGCAATTGTGAA
G
Found at i:51168909 original size:17 final size:17
Alignment explanation
Indices: 51168887--51168921 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
51168877 ACAAAGGTTT
51168887 CTTCATCTGTAGGATGC
1 CTTCATCTGTAGGATGC
51168904 CTTCATCTGTAGGATGC
1 CTTCATCTGTAGGATGC
51168921 C
1 C
51168922 AAGAAAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (17 bp):
CTTCATCTGTAGGATGC
Found at i:51181147 original size:19 final size:20
Alignment explanation
Indices: 51181122--51181177 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
51181112 AAAAGGTTTT
51181122 CTTTTTTCCTTTTTCGATTG
1 CTTTTTTCCTTTTTCGATTG
* *
51181142 -TTTTTTTCTTTTCCGATTG
1 CTTTTTTCCTTTTTCGATTG
51181161 CTCTTCTTTCCTTTTTC
1 CT-TT-TTTCCTTTTTC
51181178 TGTTTTGCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 17 0.59
20 1 0.03
21 2 0.07
22 9 0.31
ACGTcount: A:0.04, C:0.23, G:0.07, T:0.66
Consensus pattern (20 bp):
CTTTTTTCCTTTTTCGATTG
Found at i:51189725 original size:14 final size:14
Alignment explanation
Indices: 51189706--51189756 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
51189696 TATTATGCCA
51189706 ATATCTTGATACCC
1 ATATCTTGATACCC
* *
51189720 ATATCTTTGACTTTCCA
1 ATATC-TTGA--TACCC
51189737 ATAT-TTGATACCC
1 ATATCTTGATACCC
51189750 ATATCTT
1 ATATCTT
51189757 TGACTTTCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 7 0.24
14 7 0.24
15 8 0.28
17 7 0.24
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (14 bp):
ATATCTTGATACCC
Found at i:51189743 original size:15 final size:15
Alignment explanation
Indices: 51189725--51189772 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
51189715 TACCCATATC
51189725 TTTGACTTTCCAATA
1 TTTGACTTTCCAATA
** *
51189740 TTTGA-TACCCATATC
1 TTTGACTTTCCA-ATA
51189755 TTTGACTTTCCAATA
1 TTTGACTTTCCAATA
51189770 TTT
1 TTT
51189773 CGAATGCTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.06, T:0.48
Consensus pattern (15 bp):
TTTGACTTTCCAATA
Found at i:51189747 original size:30 final size:30
Alignment explanation
Indices: 51189703--51189772 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
51189693 TTTTATTATG
51189703 CCAATATCTTGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
51189734 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
51189764 CCAATATTT
1 CCAATATTT
51189773 CGAATGCTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
30 32 0.82
31 7 0.18
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:51190749 original size:30 final size:30
Alignment explanation
Indices: 51190714--51190772 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
51190704 AGAACCATCC
* * *
51190714 CCTAGTTTTTATGGGTTAACTAGAACTCTT
1 CCTAGTTTTTATGGCTCAACTAAAACTCTT
*
51190744 CCTAGTTTTTGTGGCTCAACTAAAACTCT
1 CCTAGTTTTTATGGCTCAACTAAAACTCT
51190773 CCCAATTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (30 bp):
CCTAGTTTTTATGGCTCAACTAAAACTCTT
Found at i:51209929 original size:29 final size:29
Alignment explanation
Indices: 51209895--51209950 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
51209885 TGTTGTATTA
* *
51209895 GGCACTATGTTTTGGTGTTATATTTATCG
1 GGCACTATGTGTCGGTGTTATATTTATCG
51209924 GGCACTATGTGTCGGTGTTATATTTAT
1 GGCACTATGTGTCGGTGTTATATTTAT
51209951 TAGTTACCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.46
Consensus pattern (29 bp):
GGCACTATGTGTCGGTGTTATATTTATCG
Found at i:51227680 original size:18 final size:19
Alignment explanation
Indices: 51227640--51227680 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
51227630 CAAACCAGTA
* *
51227640 GAAATTAAATTAAACTAAT
1 GAAATTAAATTAAAATAAC
51227659 GAAATT-AATTAAAATAAC
1 GAAATTAAATTAAAATAAC
51227677 GAAA
1 GAAA
51227681 CCAAATTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.61, C:0.05, G:0.07, T:0.27
Consensus pattern (19 bp):
GAAATTAAATTAAAATAAC
Found at i:51230145 original size:16 final size:16
Alignment explanation
Indices: 51230124--51230154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51230114 ACATATGCTC
51230124 TTTCTTCTTTTTTTCT
1 TTTCTTCTTTTTTTCT
*
51230140 TTTCTTTTTTTTTTC
1 TTTCTTCTTTTTTTC
51230155 ACAAGCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTCTTCTTTTTTTCT
Found at i:51243147 original size:36 final size:35
Alignment explanation
Indices: 51243076--51243147 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
51243066 AGCACAATAT
* * * *
51243076 ATGGCATGATAACATATCCGCTTATTTACTGTCAC
1 ATGGCATGAAAACATACCCGCATATTCACTGTCAC
* *
51243111 ATGGCATGAAAAACATACCCTCATATTCACTTTCAC
1 ATGGCATG-AAAACATACCCGCATATTCACTGTCAC
51243147 A
1 A
51243148 ATGGTCATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
35 8 0.27
36 22 0.73
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
ATGGCATGAAAACATACCCGCATATTCACTGTCAC
Found at i:51249118 original size:18 final size:19
Alignment explanation
Indices: 51249080--51249118 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
51249070 TACAACCCCT
*
51249080 CACACGCCTGTGTGGACAAA
1 CACACGCCTGTGT-GAAAAA
51249100 CACACGCCTGTGT-AAAAA
1 CACACGCCTGTGTGAAAAA
51249118 C
1 C
51249119 CACTACACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.31, G:0.21, T:0.15
Consensus pattern (19 bp):
CACACGCCTGTGTGAAAAA
Found at i:51256426 original size:15 final size:15
Alignment explanation
Indices: 51256406--51256435 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
51256396 AAAAAACATG
51256406 TTTCAAACTAAAAAA
1 TTTCAAACTAAAAAA
51256421 TTTCAAACTAAAAAA
1 TTTCAAACTAAAAAA
51256436 GAAATGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (15 bp):
TTTCAAACTAAAAAA
Found at i:51263517 original size:20 final size:19
Alignment explanation
Indices: 51263494--51263535 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
51263484 TAAAGAAAGT
51263494 AAAT-AAAATGGAAAGTAATG
1 AAATGAAAAT-GAAAGTAA-G
*
51263514 AAATGCAAATGAAAGTAAG
1 AAATGAAAATGAAAGTAAG
51263533 AAA
1 AAA
51263536 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 12 0.60
21 4 0.20
ACGTcount: A:0.62, C:0.02, G:0.19, T:0.17
Consensus pattern (19 bp):
AAATGAAAATGAAAGTAAG
Found at i:51265040 original size:20 final size:22
Alignment explanation
Indices: 51265007--51265046 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51264997 CCTTGTATTT
*
51265007 TAAAAATTTTTATCT-TTTCCC
1 TAAAAATTTCTATCTGTTTCCC
51265028 TAAAAA-TTCTATCTGTTTC
1 TAAAAATTTCTATCTGTTTC
51265047 TGATTTAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (22 bp):
TAAAAATTTCTATCTGTTTCCC
Found at i:51266026 original size:27 final size:27
Alignment explanation
Indices: 51265994--51266129 Score: 114
Period size: 27 Copynumber: 5.0 Consensus size: 27
51265984 CACGACAATT
* *
51265994 AAGAATAGCCTTTCT-GACGAGCTCTGA
1 AAGAATAGCCTTTCTGGA-AAACTCTGA
*
51266021 AAGAATAGCCTTTGTGGAAAACTCTGA
1 AAGAATAGCCTTTCTGGAAAACTCTGA
* * *
51266048 AAGAATAGCCTTTGTGGCAAACTTTGA
1 AAGAATAGCCTTTCTGGAAAACTCTGA
** * ** *
51266075 AAGAATATTCTTTATGGCGAACTCTAA
1 AAGAATAGCCTTTCTGGAAAACTCTGA
* *
51266102 AAGAGAT-GCCTTTGTGGAAAATTCTGA
1 AAGA-ATAGCCTTTCTGGAAAACTCTGA
51266129 A
1 A
51266130 TGGATTGTCT
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
27 85 0.96
28 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
AAGAATAGCCTTTCTGGAAAACTCTGA
Found at i:51266076 original size:54 final size:54
Alignment explanation
Indices: 51265994--51266129 Score: 139
Period size: 54 Copynumber: 2.5 Consensus size: 54
51265984 CACGACAATT
* * * * * *
51265994 AAGAATAGCCTTTCTGACGAGCTCTGAAAGAATAGCCTTTGTGGAAAACTCTGA
1 AAGAATAGCCTTTGTGGCAAACTCTGAAAGAATAGCCTTTATGGAAAACTCTAA
* ** **
51266048 AAGAATAGCCTTTGTGGCAAACTTTGAAAGAATATTCTTTATGGCGAACTCTAA
1 AAGAATAGCCTTTGTGGCAAACTCTGAAAGAATAGCCTTTATGGAAAACTCTAA
* *
51266102 AAGAGAT-GCCTTTGTGGAAAATTCTGAA
1 AAGA-ATAGCCTTTGTGGCAAACTCTGAA
51266130 TGGATTGTCT
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
54 65 0.97
55 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (54 bp):
AAGAATAGCCTTTGTGGCAAACTCTGAAAGAATAGCCTTTATGGAAAACTCTAA
Found at i:51266267 original size:9 final size:9
Alignment explanation
Indices: 51266253--51266281 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
51266243 GATATGAGTA
51266253 AGTTTTAGT
1 AGTTTTAGT
51266262 AGTTTTAGT
1 AGTTTTAGT
51266271 AGTTTT-GT
1 AGTTTTAGT
51266279 AGT
1 AGT
51266282 AACTATAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (9 bp):
AGTTTTAGT
Found at i:51271795 original size:14 final size:15
Alignment explanation
Indices: 51271770--51271798 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
51271760 AACTTGTTGC
51271770 CTTTTTTCTTTTATT
1 CTTTTTTCTTTTATT
51271785 CTTTTTT-TTTTATT
1 CTTTTTTCTTTTATT
51271799 TGCTACAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (15 bp):
CTTTTTTCTTTTATT
Found at i:51279134 original size:20 final size:22
Alignment explanation
Indices: 51279095--51279135 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
51279085 CCTTTTTTAA
*
51279095 AATCGTAAATAAGTAAAAAAAT
1 AATCGTAAATAAGAAAAAAAAT
51279117 AATCG-AAA-AAGAAAAAAAA
1 AATCGTAAATAAGAAAAAAAA
51279136 AAAGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15
Consensus pattern (22 bp):
AATCGTAAATAAGAAAAAAAAT
Found at i:51279336 original size:22 final size:22
Alignment explanation
Indices: 51279301--51279358 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
51279291 AAAGGGTATC
* *
51279301 TACAAATTAAATCTT-TAAGAT
1 TACAAATCATATCTTCTAAGAT
51279322 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
51279345 TGCATATCATATCT
1 TACAAATCATATCT
51279359 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 20 0.65
23 8 0.26
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51281928 original size:16 final size:16
Alignment explanation
Indices: 51281907--51281937 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51281897 TTAAATTTTG
51281907 AATTTTGAATTTTCAA
1 AATTTTGAATTTTCAA
51281923 AATTTTGAATTTTCA
1 AATTTTGAATTTTCA
51281938 TTTCATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (16 bp):
AATTTTGAATTTTCAA
Found at i:51292628 original size:44 final size:43
Alignment explanation
Indices: 51292580--51293092 Score: 571
Period size: 44 Copynumber: 11.7 Consensus size: 43
51292570 TTCGATCTGC
* *
51292580 TCCACTACTGCTTAGGGAGACAGGA-TCTACAATCTTCAACCTAT
1 TCCACTACTG-TTAGGGAGATAGGACT-TACAATCTTCCACCTAT
* * *
51292624 TCCACTGCTGTCCAGGGATATAGGACTTACAATCTTCCACCTAT
1 TCCACTACTGT-TAGGGAGATAGGACTTACAATCTTCCACCTAT
* *
51292668 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTAT
1 TCCACTACTGTT-AGGGAGATAGGACTTACAATCTTCCACCTAT
* * *
51292712 TCCACTACTGTTCAGGGAGATAGGACTTATAATCTTTCACCTAC
1 TCCACTACTGTT-AGGGAGATAGGACTTACAATCTTCCACCTAT
* * *
51292756 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTCT
1 TCCACTACTGTT-AGGGAGATAGGACTTACAATCTTCCACCTAT
* * * * * * *
51292800 TCCACTACTGTTCAGAGAGATAGAACTTATAGTTTTCTACTTAT
1 TCCACTACTGTT-AGGGAGATAGGACTTACAATCTTCCACCTAT
** *
51292844 TCCACTGTTGTTTAGGGAGATAGGACTTACAACCTTCCACCTAT
1 TCCACTACTG-TTAGGGAGATAGGACTTACAATCTTCCACCTAT
*
51292888 TCCACTACTGTTTAGGGAGATAGGACTTACAATCTTCCATCTAT
1 TCCACTACTG-TTAGGGAGATAGGACTTACAATCTTCCACCTAT
** *
51292932 TCCACTGTTGTTTAGGGAGATAGGACTTAAAATCTTCCACCTAT
1 TCCACTACTG-TTAGGGAGATAGGACTTACAATCTTCCACCTAT
* * *
51292976 TCCACTACTGTCCAGGGAGATAGGACTTATAGTCTTCCACCTAT
1 TCCACTACTGT-TAGGGAGATAGGACTTACAATCTTCCACCTAT
* *
51293020 TCCACTGA-TGCTCAAGGAGATAGGACTTACAATCTTCCACCTAT
1 TCCACT-ACTG-TTAGGGAGATAGGACTTACAATCTTCCACCTAT
** *
51293064 TCCACTGTTGTTCAGGGAGATATGACTTA
1 TCCACTACTGTT-AGGGAGATAGGACTTA
51293093 TAGTTTTACC
Statistics
Matches: 401, Mismatches: 59, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.01
44 393 0.98
45 5 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (43 bp):
TCCACTACTGTTAGGGAGATAGGACTTACAATCTTCCACCTAT
Found at i:51292820 original size:132 final size:132
Alignment explanation
Indices: 51292580--51293092 Score: 670
Period size: 132 Copynumber: 3.9 Consensus size: 132
51292570 TTCGATCTGC
* * * *
51292580 TCCACTACTGCTT-AGGGAGACAGGA-TCTACAATCTTCAACCTATTCCACTGCTGTCCAGGGAT
1 TCCACTACTG-TTCAGGGAGATAGGACT-TACAATCTTCCACCTATTCCACTGCTGTTCAGGGAG
* *
51292643 ATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCAC
64 ATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTAAAATCTTCCAC
51292708 CTAT
129 CTAT
* * *
51292712 TCCACTACTGTTCAGGGAGATAGGACTTATAATCTTTCACCTACTCCACTGCTGTTCAGGGAGAT
1 TCCACTACTGTTCAGGGAGATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGAT
* * * * * * * * * *
51292777 AGGACTTACAACCTTCCACCTCTTCCACTACTGTTCAGAGAGATAGAACTTATAGTTTTCTACTT
66 AGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTAAAATCTTCCACCT
51292842 AT
131 AT
** * * * *
51292844 TCCACTGTTGTTTAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTTAGGGAGAT
1 TCCACTACTGTTCAGGGAGATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGAT
* * *
51292909 AGGACTTACAATCTTCCATCTATTCCACTGTTGTTTAGGGAGATAGGACTTAAAATCTTCCACCT
66 AGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTAAAATCTTCCACCT
51292974 AT
131 AT
* * * * * *
51292976 TCCACTACTGTCCAGGGAGATAGGACTTATAGTCTTCCACCTATTCCACTGATGCTCAAGGAGAT
1 TCCACTACTGTTCAGGGAGATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGAT
* *
51293041 AGGACTTACAATCTTCCACCTATTCCACTGTTGTTCAGGGAGATATGACTTA
66 AGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTA
51293093 TAGTTTTACC
Statistics
Matches: 324, Mismatches: 55, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
131 2 0.01
132 321 0.99
133 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (132 bp):
TCCACTACTGTTCAGGGAGATAGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGAT
AGGACTTACAATCTTCCACCTATTCCACTGCTGTTCAGGGAGATAGGACTTAAAATCTTCCACCT
AT
Found at i:51293096 original size:88 final size:88
Alignment explanation
Indices: 51292580--51293094 Score: 683
Period size: 88 Copynumber: 5.9 Consensus size: 88
51292570 TTCGATCTGC
* * * * * * *
51292580 TCCACTACTGCTT-AGGGAGACAGGA-TCTACAATCTTCAACCTATTCCACTGCTGTCCAGGGAT
1 TCCACTGCTG-TTCAGGGAGATAGGACT-TACAACCTTCCACCTATTCCACTACTGTTCAGGGAG
*
51292643 ATAGGACTTACAATCTTCCACCTAT
64 ATAGGACTTATAATCTTCCACCTAT
51292668 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
1 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
* *
51292733 AGGACTTATAATCTTTCACCTAC
66 AGGACTTATAATCTTCCACCTAT
* *
51292756 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTCTTCCACTACTGTTCAGAGAGAT
1 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
* * * * *
51292821 AGAACTTATAGTTTTCTACTTAT
66 AGGACTTATAATCTTCCACCTAT
* * *
51292844 TCCACTGTTGTTTAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTTAGGGAGAT
1 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
* *
51292909 AGGACTTACAATCTTCCATCTAT
66 AGGACTTATAATCTTCCACCTAT
* * * * *
51292932 TCCACTGTTGTTTAGGGAGATAGGACTTAAAATCTTCCACCTATTCCACTACTGTCCAGGGAGAT
1 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
*
51292997 AGGACTTATAGTCTTCCACCTAT
66 AGGACTTATAATCTTCCACCTAT
* * * * **
51293020 TCCACTGATGCTCAAGGAGATAGGACTTACAATCTTCCACCTATTCCACTGTTGTTCAGGGAGAT
1 TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
*
51293085 ATGACTTATA
66 AGGACTTATA
51293095 GTTTTACCGG
Statistics
Matches: 378, Mismatches: 47, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
87 2 0.01
88 375 0.99
89 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (88 bp):
TCCACTGCTGTTCAGGGAGATAGGACTTACAACCTTCCACCTATTCCACTACTGTTCAGGGAGAT
AGGACTTATAATCTTCCACCTAT
Found at i:51317047 original size:267 final size:266
Alignment explanation
Indices: 51316572--51317108 Score: 984
Period size: 267 Copynumber: 2.0 Consensus size: 266
51316562 GATCGAAAGG
* *
51316572 TCCTTCTGGGGTATCGACTAGTTGATTGAATAAGAAACCCTAAAGTGACAGTTGGTTATGATTAC
1 TCCTTCTGGGGTATCAACTAGTTGATTGAATAAGAAAACCTAAAGTGACAGTTGGTTATGATTAC
51316637 CGAAGCGAGCTAATCACCCATGCTCAAATTTGACAAATTCTATTATTTAATTTCTCGTTACTTAT
66 CGAAGCGAGCTAATCACCCATGCTCAAATTTGACAAATTCTATTATTTAATTTCTCGTTACTTAT
*
51316702 TCTTTTATTTTTATTATTAAAAATCCCAAAAACCTTTCTTAATATTTCATTGTAATATAATCTAT
131 TCTTTTATTTTTATTATTAAAAATCCCAAAAACCTTTCTTAATATTTCATCGTAATATAATCTAT
51316767 CTAAAGTACTAATTAGATATATTTGTGCTTAGGTTTAGAATTAACCTAGTACTCGCATCCCTTGG
196 CTAAAGTACTAATTAGATATATTTGTGCTTAGGTTTAGAATTAACCTAGTACTCGCATCCCTTGG
*
51316832 GTTTCGA
261 G-TACGA
*
51316839 TCCTTCTGGGGTATCAACTAGTTGATTGAATAAGAAAACCTAAAGTGATAGTTGGTTATGATTAC
1 TCCTTCTGGGGTATCAACTAGTTGATTGAATAAGAAAACCTAAAGTGACAGTTGGTTATGATTAC
*
51316904 CGAAGCGAGCTAATCACCCATGCTCAAATTTTACAAATTCTATTATTTAATTTCTCGTTACTTAT
66 CGAAGCGAGCTAATCACCCATGCTCAAATTTGACAAATTCTATTATTTAATTTCTCGTTACTTAT
*
51316969 TCTTTTCTTTTTATTATTAAAAATCCCAAAAACCTTTCTTAATATTTCATCGTAATATAATCTAT
131 TCTTTTATTTTTATTATTAAAAATCCCAAAAACCTTTCTTAATATTTCATCGTAATATAATCTAT
* *
51317034 CTAAAGTACTAATTAGATCTATTTGTGCTTAGGTTTAGAATTAACCTAGTACTCGTATCCCTTGG
196 CTAAAGTACTAATTAGATATATTTGTGCTTAGGTTTAGAATTAACCTAGTACTCGCATCCCTTGG
51317099 GTACGA
261 GTACGA
51317105 TCCT
1 TCCT
51317109 CAAAGTACTC
Statistics
Matches: 261, Mismatches: 9, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
266 8 0.03
267 253 0.97
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (266 bp):
TCCTTCTGGGGTATCAACTAGTTGATTGAATAAGAAAACCTAAAGTGACAGTTGGTTATGATTAC
CGAAGCGAGCTAATCACCCATGCTCAAATTTGACAAATTCTATTATTTAATTTCTCGTTACTTAT
TCTTTTATTTTTATTATTAAAAATCCCAAAAACCTTTCTTAATATTTCATCGTAATATAATCTAT
CTAAAGTACTAATTAGATATATTTGTGCTTAGGTTTAGAATTAACCTAGTACTCGCATCCCTTGG
GTACGA
Found at i:51318349 original size:32 final size:32
Alignment explanation
Indices: 51318312--51318376 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
51318302 GAGGAGATAA
51318312 ACCACTCTTCCGTTATATGAACAATCCAGCCG
1 ACCACTCTTCCGTTATATGAACAATCCAGCCG
51318344 ACCACTCTTCCGTTATATGAACAATCCAGCCG
1 ACCACTCTTCCGTTATATGAACAATCCAGCCG
51318376 A
1 A
51318377 GGGCTTGACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.29, C:0.34, G:0.12, T:0.25
Consensus pattern (32 bp):
ACCACTCTTCCGTTATATGAACAATCCAGCCG
Found at i:51329372 original size:10 final size:10
Alignment explanation
Indices: 51329345--51329388 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
51329335 AAATTAAAAC
51329345 GAGAGAG-TT
1 GAGAGAGTTT
*
51329354 GAGAAAGTTT
1 GAGAGAGTTT
*
51329364 GAGGGAGTTT
1 GAGAGAGTTT
51329374 GAGAGAG-TT
1 GAGAGAGTTT
51329383 GAGAGA
1 GAGAGA
51329389 AGGATGTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 14 0.47
10 16 0.53
ACGTcount: A:0.34, C:0.00, G:0.43, T:0.23
Consensus pattern (10 bp):
GAGAGAGTTT
Found at i:51330045 original size:32 final size:32
Alignment explanation
Indices: 51330000--51330074 Score: 132
Period size: 32 Copynumber: 2.3 Consensus size: 32
51329990 AATTGGTTCA
* *
51330000 TGTTTTATCTAATTTGTTAATTGTTGTATTGG
1 TGTTTGATATAATTTGTTAATTGTTGTATTGG
51330032 TGTTTGATATAATTTGTTAATTGTTGTATTGG
1 TGTTTGATATAATTTGTTAATTGTTGTATTGG
51330064 TGTTTGATATA
1 TGTTTGATATA
51330075 CTTTCAAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.21, C:0.01, G:0.20, T:0.57
Consensus pattern (32 bp):
TGTTTGATATAATTTGTTAATTGTTGTATTGG
Found at i:51332141 original size:20 final size:18
Alignment explanation
Indices: 51332116--51332159 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
51332106 TCTCAAGCTC
51332116 CTTCTTTAAATTATCTATTT
1 CTTCTTTAAA-TATCT-TTT
*
51332136 CTTCTTTCAATATCTTTT
1 CTTCTTTAAATATCTTTT
*
51332154 CCTCTT
1 CTTCTT
51332160 CTGTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 5 0.23
20 9 0.41
ACGTcount: A:0.18, C:0.23, G:0.00, T:0.59
Consensus pattern (18 bp):
CTTCTTTAAATATCTTTT
Found at i:51333632 original size:48 final size:48
Alignment explanation
Indices: 51333561--51333654 Score: 188
Period size: 48 Copynumber: 2.0 Consensus size: 48
51333551 AGGAATGTTC
51333561 TGATATTGGAAAAATTCACATGCCACATTTAGTTCAAGAAAACAATTA
1 TGATATTGGAAAAATTCACATGCCACATTTAGTTCAAGAAAACAATTA
51333609 TGATATTGGAAAAATTCACATGCCACATTTAGTTCAAGAAAACAAT
1 TGATATTGGAAAAATTCACATGCCACATTTAGTTCAAGAAAACAAT
51333655 CTTAACATGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (48 bp):
TGATATTGGAAAAATTCACATGCCACATTTAGTTCAAGAAAACAATTA
Found at i:51336267 original size:17 final size:19
Alignment explanation
Indices: 51336245--51336282 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51336235 AAGTTTAGAA
51336245 GTAAAA-AAT-TATATTAT
1 GTAAAATAATATATATTAT
51336262 GTAAAATAATATATATTAT
1 GTAAAATAATATATATTAT
51336281 GT
1 GT
51336283 CCCCTTAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
GTAAAATAATATATATTAT
Found at i:51340398 original size:14 final size:14
Alignment explanation
Indices: 51340379--51340410 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
51340369 AATATTATTT
51340379 ATTTAATTTAAATA
1 ATTTAATTTAAATA
51340393 ATTTAATTTAAATA
1 ATTTAATTTAAATA
51340407 ATTT
1 ATTT
51340411 TTCAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTTAATTTAAATA
Found at i:51344580 original size:16 final size:16
Alignment explanation
Indices: 51344559--51344610 Score: 104
Period size: 16 Copynumber: 3.2 Consensus size: 16
51344549 TTGGGTTGTT
51344559 TCATACGCCAATGTCA
1 TCATACGCCAATGTCA
51344575 TCATACGCCAATGTCA
1 TCATACGCCAATGTCA
51344591 TCATACGCCAATGTCA
1 TCATACGCCAATGTCA
51344607 TCAT
1 TCAT
51344611 GGAGTAGCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (16 bp):
TCATACGCCAATGTCA
Found at i:51346707 original size:142 final size:142
Alignment explanation
Indices: 51346486--51346913 Score: 637
Period size: 142 Copynumber: 3.0 Consensus size: 142
51346476 TACAGTGGAG
* * ** * * *
51346486 CAGATTGAAGCCAGAAATATTTTCTCCCTAAGATTACAGCGGAGCAGA-TGAAGCTATTAATCCT
1 CAGATTGAAACCAAAAATATCATCTCTCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
51346550 ATC-TCCGTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
66 ATCTTCC-TGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
51346614 GAGTAGATCGCAT
130 GAGTAGATCGCAT
* * *
51346627 CAGATTGAAACCAAAAATCTCATCTC-CTTGAGATTACAGCGGAGTAAATTGAAGCTAGTAATCC
1 CAGATTGAAACCAAAAATATCATCTCTC-TGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCC
*
51346691 TATCTTCCTGAGATTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
65 TATCTTCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
51346756 GAGTAGATCGCAT
130 GAGTAGATCGCAT
* * *
51346769 CAGATTGAAGCTAAAAATATCATCTCTCTGGGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAACCAAAAATATCATCTCTCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* * * * *
51346834 ATCTCCCTGAGATTACAGTGGAGTGTATTAAAATAAAAGATTTTATCTCTCTGAAGTTACAGTAG
66 ATCTTCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
*
51346899 AGTAGATAGCAT
131 AGTAGATCGCAT
51346911 CAG
1 CAG
51346914 GTCTTATCTC
Statistics
Matches: 260, Mismatches: 23, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
140 1 0.00
141 38 0.15
142 217 0.83
143 4 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (142 bp):
CAGATTGAAACCAAAAATATCATCTCTCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
ATCTTCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
AGTAGATCGCAT
Found at i:51347166 original size:100 final size:100
Alignment explanation
Indices: 51346958--51348246 Score: 1454
Period size: 100 Copynumber: 12.9 Consensus size: 100
51346948 GAGAATTACA
*
51346958 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
* *
51347023 ACATTGCAGTTCAAAAAGATTAAAGCTACAACATCG
66 ACATTGCAGTT-AAAAAGATTAAAGCTACAGCAGCG
* * * *
51347059 AAT-TTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACAACAGTTAATCTTGCGTCCCTG
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
* *
51347123 ACATTACGGTTAAAAAGATTAAAGCTACAGCAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * * * *
51347158 AATCTTACCTCTCAGGCGGTGCAGTGGAACATATTAAAGCCACAACGGTGAATCTCGCCTCCCTG
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
* *
51347223 ACATTGCGGTTAAAAAGATTAAAGCTACAGCAGTG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * *
51347258 AATCTTACCTCTCAGGC-AGTGCAGTGGAACAGATTAAAGCCACAAT-GATGAATCTTGCCTCCA
1 AATCTTACCTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCC
*
51347321 TGACATTGCGGTTAAAAAGATTAAAGCTACAGCAGCG
64 TGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
*
51347358 AATCTTACCTCCCAGGC-AGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGTTTCCCT
1 AATCTTACCTCCCAGGCGA-TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT
* * *
51347422 GGCATTGCAGTTAAAAAGATTAAAGCTACAACAGCA
65 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * ** * * * *
51347458 AATCTTACAC-CCTAAGCAATGCAGTGGAGTAGATTAAATCTACAACGGTGAATCTTGTTGTCCC
1 AATCTTAC-CTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCT-TCCC
* * *
51347522 -GGCATTGCAGTTAAAAAGATTAAAGCTACAGTATCG
64 TGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * * *
51347558 AGTCTTACCTCCCAAGCGGTGCAGTGGAACAAATTAAAGCCACATCGGTGAATCTTG-TTTCCTC
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT-
* * * *
51347622 GGCATTGTAGTTAAAAAGATTAAAGCCACAGCGGCG
65 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * * * * * *
51347658 AATCCTACTTCCTTAGCCG-TGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTACTTCCCC
1 AATCTTACCTCC-CAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT
51347722 GACATTGCAGTTAAAAAGATTAAAGCTACAAG-AGCG
65 GACATTGCAGTTAAAAAGATTAAAGCTAC-AGCAGCG
* * *
51347758 AATCTTA-CTCCCCAGGCGATGCAGTGGAGCAGATTAAAGCCACAACAGTGAATCTTGCTATCCC
1 AATCTTACCT-CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCT-TCCC
51347822 -GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
64 TGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* ** *
51347858 AATCTTACCTCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTATTTCCCCG
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
** * * *
51347923 GTATTGCAGTTAAAAAGATTAAAGCCACAGCGGCA
66 ACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * *
51347958 AATCTTACTTCCCTAGTG-G-TGCAGTAGAGCAGATTAAAGCCACATCGGTGAATCTTACTTCCC
1 AATCTTACCTCCC-AG-GCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCC
* * * * *
51348021 CGAAATTGCAGTTAAAAATATTAAAGCCACAGCAGTG
64 TGACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * * *
51348058 AATCTTACCTCCCTGGCAATGCAGTGGAACAGATGAAAGCCACATCGGTGAATCTTACTTCCCCG
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
* * * **
51348123 ATATTGTAGTTAAAAAGATTAAAGCCACAGTGGCG
66 ACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
* * * * * * * * * * *
51348158 AATCTTACTTCCCTGGCGGTGCAGTGGGATAGATTGAAGCTACAACAGCGAATCTTACTT-CCTC
1 AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCT-
** *
51348222 GACATCACAGTTAAATAGATTAAAG
65 GACATTGCAGTTAAAAAGATTAAAG
51348247 TTACGAGTTA
Statistics
Matches: 1029, Mismatches: 135, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
98 4 0.00
99 43 0.04
100 953 0.93
101 28 0.03
102 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
AATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
ACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
Found at i:51348192 original size:50 final size:50
Alignment explanation
Indices: 51346988--51348246 Score: 632
Period size: 50 Copynumber: 25.2 Consensus size: 50
51346978 GCAGTGGAAC
* * * *
51346988 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTT-AAAA
* * ** * * ** *
51347039 AGATTAAAGCTACAACATCGAAT-TTACCTCCCAGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGC-ATTGCAGTTAAAA
* * ** * * * * * *
51347088 AGATTAAAGCCACAACAGTTAATCTTGCGTCCCTGACATTACGGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * ** ** *
51347138 AGATTAAAGCTACAGCAGCGAATCTTACCTCTCAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * ** * * * *
51347188 ATATTAAAGCCACAACGGTGAATCTCGCCTCCCTGACATTGCGGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * * * ** *
51347238 AGATTAAAGCTACAGCAGTGAATCTTACCTCTCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
** ** * * ** * *
51347288 AGATTAAAGCCACAATGATGAATCTTGCCTCCATGACATTGCGGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * ** *
51347338 AGATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCAGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * ** *
51347388 AGATTAAAGCCACATCGGTGAATCTTGTTTCCCTGGCATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * ** * ** **
51347438 AGATTAAAGCTACAACAGCAAATCTTAC-ACCCTAAGCAATGCAGTGGAGT
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCC-CGGCATTGCAGTTAAAA
* * * * * *
51347488 AGATTAAATCTACAACGGTGAATCTT-GTTGTCCCGGCATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTT-CCCCGGCATTGCAGTTAAAA
* *** * * ** ** * *
51347538 AGATTAAAGCTACAGTATCGAGTCTTACCTCCCAAGCGGTGCAGTGGAACA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGT-TAAAA
* * ** * *
51347589 A-ATTAAAGCCACATCGGTGAATCTTGTTTCCTCGGCATTGTAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* *** ** **
51347638 AGATTAAAGCCACAGCGGCGAATCCTACTTCCTTAGCCGTGCAG-TAGAGC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTA-AAA
* * *
51347688 AGATTAAAGCCACATCGGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * ** **
51347738 AGATTAAAGCTACAAG-AGCGAATCTTAC-TCCCCAGGCGA-TGCAGTGGAGC
1 AGATTAAAGCCAC-AGCGGCGAATCTTACTTCCCC-GGC-ATTGCAGTTAAAA
* * * * *
51347788 AGATTAAAGCCACAACAGTGAATCTTGCTAT-CCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACT-TCCCCGGCATTGCAGTTAAAA
* * * * ** ** *
51347838 AGATTAAAGCTACAGCAGCGAATCTTACCTCCCAGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * *
51347888 AGATTAAAGCCACATCGGTGAATCTTATTTCCCCGGTATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* ** *** **
51347938 AGATTAAAGCCACAGCGGCAAATCTTACTTCCCTAGTGGTGCAG-TAGAGC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTA-AAA
* * **
51347988 AGATTAAAGCCACATCGGTGAATCTTACTTCCCCGAAATTGCAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * * ** *
51348038 ATATTAAAGCCACAGCAGTGAATCTTACCTCCCTGGCAATGCAGTGGAAC
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * ** *
51348088 AGATGAAAGCCACATCGGTGAATCTTACTTCCCCGATATTGTAGTTAAAA
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * ** *** *
51348138 AGATTAAAGCCACAGTGGCGAATCTTACTTCCCTGGCGGTGCAGTGGGAT
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
* * * * * * ** *
51348188 AGATTGAAGCTACAACAGCGAATCTTACTTCCTCGACATCACAGTTAAAT
1 AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
51348238 AGATTAAAG
1 AGATTAAAG
51348247 TTACGAGTTA
Statistics
Matches: 870, Mismatches: 317, Indels: 43
0.71 0.26 0.03
Matches are distributed among these distances:
49 41 0.05
50 793 0.91
51 35 0.04
52 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAGCGGCGAATCTTACTTCCCCGGCATTGCAGTTAAAA
Found at i:51349800 original size:16 final size:16
Alignment explanation
Indices: 51349776--51349806 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51349766 TCTATTTTTG
*
51349776 ATATTTTCATATATAC
1 ATATATTCATATATAC
51349792 ATATATTCATATATA
1 ATATATTCATATATA
51349807 TATTCGTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATATTCATATATAC
Found at i:51354629 original size:20 final size:20
Alignment explanation
Indices: 51354604--51354651 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
51354594 ATTCAGATTC
51354604 AATAAAAAAATCAAAATCAA
1 AATAAAAAAATCAAAATCAA
*
51354624 AATAAAAAAATCAAAGTCAA
1 AATAAAAAAATCAAAATCAA
*
51354644 AAGAAAAA
1 AATAAAAA
51354652 GAGAGAAATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.75, C:0.08, G:0.04, T:0.12
Consensus pattern (20 bp):
AATAAAAAAATCAAAATCAA
Found at i:51357134 original size:44 final size:43
Alignment explanation
Indices: 51356982--51357135 Score: 111
Period size: 44 Copynumber: 3.5 Consensus size: 43
51356972 GAAATAGTGA
* * * *
51356982 ATCTTATCTCTCTGATG-TTACAGTGGAGCAGATTGAAGCCAGAAAT
1 ATCTTATCTCCCTGA-GATTACAGCGGAGCAGATT-AA--AATAAAT
* ** *
51357028 AT-TT-TCTCCCTGAGATTACAGCGGAGCAGATGAAGCT-ATT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAAT
* *
51357068 AATCCTATCTCCCTGAGATTACAGGGGAGCAGATTAAAATAAAT
1 -ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAAT
*
51357112 GATCTTATCTCTCTGA-AGTTACAG
1 -ATCTTATCTCCCTGAGA-TTACAG
51357136 TAGAGTAGAT
Statistics
Matches: 86, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 1 0.01
43 33 0.38
44 44 0.51
45 2 0.02
46 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATAAAT
Found at i:51357266 original size:142 final size:142
Alignment explanation
Indices: 51357010--51357714 Score: 1126
Period size: 142 Copynumber: 5.0 Consensus size: 142
51357000 TACAGTGGAG
* * *
51357010 CAGATTGAAGCCAGAAATATTTTCTCCCTGAGATTACAGCGGAGCAGA-TGAAGCTATTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* * *
51357074 ATCTCCCTGAGATTACAGGGGAGCAGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
*
51357139 AGTAGATCGGAT
131 AGTAGATCGCAT
* * *
51357151 TAGATTGAAGCCAGAAATCTCATCTCCATGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
*
51357216 ATCTCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
51357281 AGTAGATCGCAT
131 AGTAGATCGCAT
* * *
51357293 CAGATTGAAGCCAAAAATCTCATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
*
51357358 ATCTCCCTGAGATT-CTAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGCTACAGTA
66 ATCTCCCTGAGATTAC-AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTA
* *
51357422 GTGTAGATCACAT
130 GAGTAGATCGCAT
*
51357435 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* * *
51357500 AACTCCCTGAGATTACAGTGGAGCGGATTAAAATAAGGGATCTTATCTCTCTGAAGTTATAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
51357565 AGTAGATCGCAT
131 AGTAGATCGCAT
* *
51357577 CAGATTGAAGCCAGAAATCTTATCTCCCTGATATTACAGTGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* * * * *
51357642 AACTCCCTGAGATTACAGTGGAGCGGAGTAAAATAAATGATATTATATCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
*
51357707 ATTAGATC
131 AGTAGATC
51357715 ACATAAGGTC
Statistics
Matches: 522, Mismatches: 39, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
141 44 0.08
142 477 0.91
143 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (142 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
AGTAGATCGCAT
Done.