Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 185 of 213
Found at i:55624909 original size:16 final size:17
Alignment explanation
Indices: 55624877--55624910 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
55624867 TTATTATTAA
55624877 ATATAATTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
55624895 ATATAATTTAA-AAAAT
1 ATATAATTTAATAAAAT
55624911 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
18 11 0.69
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55627703 original size:26 final size:26
Alignment explanation
Indices: 55627673--55627723 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
55627663 CCGTAAAATA
55627673 CTGCAGCTAATACCAATGACAAAAAC
1 CTGCAGCTAATACCAATGACAAAAAC
*
55627699 CTGCAGCTAATATCAATGACAAAAA
1 CTGCAGCTAATACCAATGACAAAAA
55627724 TAAATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCAGCTAATACCAATGACAAAAAC
Found at i:55636690 original size:23 final size:24
Alignment explanation
Indices: 55636638--55636683 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
55636628 CTTTTCCTAT
55636638 AATATT-TT-TTTTACTTTAAAAA
1 AATATTATTATTTTACTTTAAAAA
*
55636660 AATATTATTATTTTATTTTAAAAA
1 AATATTATTATTTTACTTTAAAAA
55636684 TATTTATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.29
23 2 0.10
24 13 0.62
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
AATATTATTATTTTACTTTAAAAA
Found at i:55639115 original size:75 final size:77
Alignment explanation
Indices: 55638958--55639120 Score: 206
Period size: 77 Copynumber: 2.1 Consensus size: 77
55638948 TAATTTAAAT
* * *
55638958 AACTTTATATTTATGTAATGACTTTTTTTCCATTCTAGTTATTAATTTTAGGGTTTTCTTTTGCA
1 AACTTTGTATTTATGTAATGACTTTTTTGCCATTCTAGTTATTAATTTTAGGGTGTTCTTTTGCA
* *
55639023 ATTTAAATAGTC
66 ATTTAAATAATA
* * ** *
55639035 AACTTTGTATTTGTGTAATGACTTTTTTGCGATT-TCAGTTATTCTTTTTAGGG-GTT-TTTTGT
1 AACTTTGTATTTATGTAATGACTTTTTTGCCATTCT-AGTTATTAATTTTAGGGTGTTCTTTTGC
55639097 AATTTAAATAATA
65 AATTTAAATAATA
55639110 AACTTTGTATT
1 AACTTTGTATT
55639121 ATTTACGTAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
75 27 0.36
76 3 0.04
77 45 0.60
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (77 bp):
AACTTTGTATTTATGTAATGACTTTTTTGCCATTCTAGTTATTAATTTTAGGGTGTTCTTTTGCA
ATTTAAATAATA
Found at i:55640653 original size:46 final size:46
Alignment explanation
Indices: 55640600--55640784 Score: 291
Period size: 46 Copynumber: 4.0 Consensus size: 46
55640590 ACAACGCTAT
55640600 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
* * *
55640646 AACTCAGTATGGTTTTCTTTACCGAATTACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
* **
55640692 AACTCAGTATGATTTTCTTCATTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
*
55640738 AACTCAGTATGGTTTTCTTCACTAG-AATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCAC-AGAAATACCATACCTACTTTTCAC
55640784 A
1 A
55640785 CTTAGCCATG
Statistics
Matches: 126, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 125 0.99
47 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
Found at i:55642013 original size:17 final size:17
Alignment explanation
Indices: 55641991--55642023 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
55641981 AAATTCTTTT
55641991 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
55642008 TAAATCACAAAATTCA
1 TAAATCACAAAATTCA
55642024 CTAATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:55649169 original size:19 final size:19
Alignment explanation
Indices: 55649115--55649169 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
55649105 ATTCAGAAAC
* *
55649115 TAACAAAATTAATAAC--C
1 TAACAAAATTACTAACAAA
* **
55649132 TAACAAAATAACTTTCAAA
1 TAACAAAATTACTAACAAA
55649151 TAACAAAATTACTAACAAA
1 TAACAAAATTACTAACAAA
55649170 ACTTTCTATT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 12 0.43
19 16 0.57
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (19 bp):
TAACAAAATTACTAACAAA
Found at i:55649511 original size:17 final size:17
Alignment explanation
Indices: 55649489--55649526 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
55649479 AACCACTAGT
55649489 AAAAT-AATATTTTTAAA
1 AAAATAAATA-TTTTAAA
55649506 AAAATAAATATTTTAAA
1 AAAATAAATATTTTAAA
55649523 AAAA
1 AAAA
55649527 GGTGGTGGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAAATAAATATTTTAAA
Found at i:55652588 original size:3 final size:3
Alignment explanation
Indices: 55652580--55652615 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
55652570 ATATGGCATA
55652580 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AA
55652616 GATCTTTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:55656902 original size:35 final size:35
Alignment explanation
Indices: 55656861--55656928 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
55656851 TTTATATGCC
* * * *
55656861 ATGTTAAATGCAATATTGTATAATATTGAGTTATA
1 ATGTTAAATACAATATTATATAACAATGAGTTATA
55656896 ATGTTAAATACAATATTATATAACAATGAGTTA
1 ATGTTAAATACAATATTATATAACAATGAGTTA
55656929 AGAAATAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (35 bp):
ATGTTAAATACAATATTATATAACAATGAGTTATA
Found at i:55657326 original size:20 final size:20
Alignment explanation
Indices: 55657292--55657333 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
55657282 AACTATTTAA
** *
55657292 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
55657312 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
55657332 AT
1 AT
55657334 GTTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:55660440 original size:10 final size:10
Alignment explanation
Indices: 55660425--55660453 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
55660415 TAAATTCCTA
55660425 AAAGATAAAT
1 AAAGATAAAT
55660435 AAAGATAAAT
1 AAAGATAAAT
55660445 AAA-ATAAAT
1 AAAGATAAAT
55660454 TCCTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.32
10 13 0.68
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:55663723 original size:32 final size:32
Alignment explanation
Indices: 55663681--55663741 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
55663671 TTTTTTGAAA
55663681 AATAATTATAACTATTTAAAT-AAT-ATTATTTG
1 AATAATTATAA-TA-TTAAATGAATAATTATTTG
*
55663713 AATAGTTATAATATTAAATGAATAATTAT
1 AATAATTATAATATTAAATGAATAATTAT
55663742 GTTTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 6 0.23
31 5 0.19
32 15 0.58
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (32 bp):
AATAATTATAATATTAAATGAATAATTATTTG
Found at i:55663734 original size:20 final size:20
Alignment explanation
Indices: 55663700--55663741 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
55663690 AACTATTTAA
** *
55663700 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
55663720 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
55663740 AT
1 AT
55663742 GTTTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:55675599 original size:16 final size:16
Alignment explanation
Indices: 55675574--55675611 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
55675564 GACCATTGAG
55675574 TCTA-TTTTATTTATTT
1 TCTATTTTTATTT-TTT
55675590 T-TATTTTTATTTTTT
1 TCTATTTTTATTTTTT
55675605 TCTATTT
1 TCTATTT
55675612 ATGTCGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (16 bp):
TCTATTTTTATTTTTT
Found at i:55694343 original size:6 final size:6
Alignment explanation
Indices: 55694324--55694362 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
55694314 TGTAAATGAA
*
55694324 TTCATT TCTCATT TTCATT TTCATT TTCATT TCCATT TT
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTCATT TT
55694363 GAGAAAACCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (6 bp):
TTCATT
Found at i:55704014 original size:11 final size:11
Alignment explanation
Indices: 55703998--55704037 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
55703988 AATTTAAAAA
55703998 TAAAAAAATTT
1 TAAAAAAATTT
55704009 TAAAAAAGTATTT
1 TAAAAAA--ATTT
*
55704022 TAAAAATATTT
1 TAAAAAAATTT
55704033 TAAAA
1 TAAAA
55704038 TTTAAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 16 0.62
13 10 0.38
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (11 bp):
TAAAAAAATTT
Found at i:55704050 original size:25 final size:25
Alignment explanation
Indices: 55704022--55704080 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
55704012 AAAAGTATTT
55704022 TAAAAATATTTTAAAATTTAAAAAA
1 TAAAAATATTTTAAAATTTAAAAAA
55704047 TAAAAATATTTTAAAATTTAAAAAA
1 TAAAAATATTTTAAAATTTAAAAAA
55704072 TAAAAATAT
1 TAAAAATAT
55704081 ATATATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (25 bp):
TAAAAATATTTTAAAATTTAAAAAA
Found at i:55705513 original size:33 final size:33
Alignment explanation
Indices: 55705476--55705541 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
55705466 CCCGTGAGTT
55705476 AGGGTACAATTTCTCGAAGCTCTAAACACGGAA
1 AGGGTACAATTTCTCGAAGCTCTAAACACGGAA
55705509 AGGGTACAATTTCTCGAAGCTCTAAACACGGAA
1 AGGGTACAATTTCTCGAAGCTCTAAACACGGAA
55705542 TATTGCCTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (33 bp):
AGGGTACAATTTCTCGAAGCTCTAAACACGGAA
Found at i:55707902 original size:143 final size:143
Alignment explanation
Indices: 55707642--55708126 Score: 745
Period size: 143 Copynumber: 3.4 Consensus size: 143
55707632 ACTGCAATCT
* * * *
55707642 GCCATAATTTGTAGTTTTAATCTGTTCCACTGCAACGCTAGGGAAATAAGATTTGCTGTCTTCAC
1 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
* * * * *
55707707 TCTACTCTGCTGCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTTCTCCACTGTAACTTCAG
66 TTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGTAACTTCAG
*
55707772 AAAGATAAGATCC
131 GAAGATAAGATCC
* *
55707785 ACCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTATCTTCAG
1 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
* * *
55707850 TTTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCATTCTACTCCATTGTAACTTCAG
66 TTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGTAACTTCAG
55707915 GAAGATAAGATCC
131 GAAGATAAGATCC
* * * *
55707928 GCCATAATTTTTAGCTTTAATCTGTTCCACTGCAATGCTAGGGAAATAAGATTCGTTGTCTTCAG
1 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
* * *
55707993 TTTGCTCCGCTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
66 TTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGTAACTTCAG
*
55708058 GAAGATAAGATCT
131 GAAGATAAGATCC
* *
55708071 GCCATAATTTGTAGCTTTAATCTGTTTCATTGCAACGCCAGGGAAATAAGATTCGC
1 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGC
55708127 CAGGATGACT
Statistics
Matches: 308, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
143 308 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (143 bp):
GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAG
TTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTGTAACTTCAG
GAAGATAAGATCC
Found at i:55711629 original size:9 final size:9
Alignment explanation
Indices: 55711610--55711642 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
55711600 ATACAATGCT
55711610 AATGC-ATG
1 AATGCAATG
*
55711618 AATGTAATG
1 AATGCAATG
55711627 AATGCAATG
1 AATGCAATG
55711636 AATGCAA
1 AATGCAA
55711643 AAAAAAGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.45, C:0.09, G:0.21, T:0.24
Consensus pattern (9 bp):
AATGCAATG
Found at i:55716679 original size:16 final size:16
Alignment explanation
Indices: 55716660--55716690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55716650 GCAAAAGCCT
*
55716660 AAAAAGAAAAGAGAAA
1 AAAAAGAAAAAAGAAA
55716676 AAAAAGAAAAAAGAA
1 AAAAAGAAAAAAGAA
55716691 TCCGGCCACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAAAGAAA
Found at i:55717719 original size:9 final size:8
Alignment explanation
Indices: 55717698--55717722 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
55717688 TAACTTTGTT
55717698 ATTTTTAA
1 ATTTTTAA
55717706 ATTTTTAA
1 ATTTTTAA
55717714 ATTTTTAA
1 ATTTTTAA
55717722 A
1 A
55717723 AAAATAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
ATTTTTAA
Found at i:55717767 original size:2 final size:2
Alignment explanation
Indices: 55717760--55717784 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
55717750 AGTTCATGCT
55717760 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
55717785 CTTTACACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55721848 original size:100 final size:100
Alignment explanation
Indices: 55721675--55722181 Score: 701
Period size: 100 Copynumber: 5.1 Consensus size: 100
55721665 TTACTCGTAA
* *** * * * * *
55721675 CTTTAATCTGTTTAACTATGATGTCGAGGAAGCAAGATTTGCTGTTGTAGC-TTCAATTTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTT-AATCTGTTCC
* * *
55721739 ACTACACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
65 ACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
* * *
55721775 CTTTAATCTTTATAACTGCAATTTCGGGGAAGCAAGATTCGCCGTTGTGGCATTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
*
55721840 CTACACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
* * *
55721875 CTTTAATCTTTTTGACTGCAATGTCGGGGAAGCAAGGTTCGTCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * *
55721940 CTACACTGCTTGAGAAGTAAGATTCGCTGTGGTAG
66 CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
* *
55721975 CTTTAATCTTTTTAACTGCAATGTCGGCGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
* * * *
55722040 TTGCACCGCTTGAAAAGTAAAATTCGCTGTGGTAG
66 CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
* * * *
55722075 CTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGGTTCGCAGTTGTGGCGTTAATCTGTTACA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
*
55722140 CTGCATCGCTTGAGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
55722175 CTTTAAT
1 CTTTAAT
55722182 GTCGGGGAAG
Statistics
Matches: 368, Mismatches: 38, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
100 366 0.99
101 2 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCGTTAATCTGTTCCA
CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
Found at i:55721981 original size:50 final size:50
Alignment explanation
Indices: 55721703--55722181 Score: 299
Period size: 50 Copynumber: 9.6 Consensus size: 50
55721693 TGATGTCGAG
* * * * * * *
55721703 GAAGCAAGATTTGCTGTTGTAGCTTCAATTTGTTCCACTACACCGCCTGG
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCTTGA
* ** * *
55721753 GAAGTAAGATTCGCTGTTGTAGCTTTAATCT-TTATAACTGCAAT--TTCGGG
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTT-CCACTGCACTGCTT--GA
* * * * *
55721803 GAAGCAAGATTCGCCGTTGTGGCATTAATCTGTTCCACTACACCGCTTGA
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCTTGA
* * ** * * *
55721853 GAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTGACTGCAATG-TCGGG
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCT-TGA
* * * *
55721903 GAAGCAAGGTTCG-TCGTTGTGGCGTTAATCTGTTCCACTACACTGCTTGA
1 GAAGCAAGATTCGCT-GTTGTAGCTTTAATCTGTTCCACTGCACTGCTTGA
* * * ** * * *
55721953 GAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATG-TCGGC
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCT-TGA
* * * * * *
55722003 GAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCATTGCACCGCTTGA
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCTTGA
* * * * * ** * * * *
55722053 AAAGTAAAATTCGCTGTGGTAGCTTTAATCTTTTTAATTGCAATG-TCGGG
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCT-TGA
* * * * *
55722103 GAAGCAAGGTTCGCAGTTGTGGCGTTAATCTGTTACACTGCA-TCGCTTGA
1 GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACT-GCTTGA
*
55722153 GAAGTAAGATTCGCTGTTGTAGCTTTAAT
1 GAAGCAAGATTCGCTGTTGTAGCTTTAAT
55722182 GTCGGGGAAG
Statistics
Matches: 311, Mismatches: 103, Indels: 30
0.70 0.23 0.07
Matches are distributed among these distances:
48 1 0.00
49 7 0.02
50 295 0.95
51 6 0.02
52 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (50 bp):
GAAGCAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACTGCTTGA
Found at i:55722018 original size:200 final size:200
Alignment explanation
Indices: 55721675--55722844 Score: 1417
Period size: 200 Copynumber: 5.9 Consensus size: 200
55721665 TTACTCGTAA
* *** * * * * * *
55721675 CTTTAATCTGTTTAACTATGATGTCGAGGAAGCAAGATTTGCTGTTGTAGC-TTCAATTTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTT-AATCTGTTCC
* * * * *
55721739 ACTACACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTATAACTGCAATTTCGGGG
65 ACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
* * * * *
55721804 AAGCAAGATTCGCCGTTGTGGCATTAATCTGTTCCACTACACCGCTTGAGAAGTAAGATTCGCTG
130 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTCGCTG
55721869 TTGTAG
195 TTGTAG
* *
55721875 CTTTAATCTTTTTGACTGCAATGTCGGGGAAGCAAGGTTCGTCGTTGTGGCGTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
* * * *
55721940 CTACA-CTGCTTGAGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGGCG
66 CTGCATC-GCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
* * * * * * * *
55722004 AAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCATTGCACCGCTTGAAAAGTAAAATTCGCTG
130 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTCGCTG
*
55722069 TGGTAG
195 TTGTAG
* * *
55722075 CTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGGTTCGCAGTTGTGGCGTTAATCTGTTACA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
*
55722140 CTGCATCGCTTGAGAAGTAAGATTCGCTGTTGTAG-------C---TT---T--AATGTCGGGGA
66 CTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGA
* * * * *
55722190 AGCAAGATTCACCAATGTGGCTTTAATCTATTCCATTGCACCGCCAGGGAAGTAAGATTCGCTGT
131 AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTCGCTGT
55722255 TGTAG
196 TGTAG
* * * * * * *
55722260 CTTTAATCTTTTTGACTGCAATATCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTAG-TCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCT-GTTCC
* * * * *
55722324 AATGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATATCGGGG
65 ACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
* *
55722389 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCT-AGGGAGTAAGATTCACT
130 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGA-GAAGTAAGATTCGCT
55722453 GTTGTAG
194 GTTGTAG
* * * *
55722460 CTTTAATCTTTTTAACTGCAATGTCGGGGAAG-AAGAATTCACCGATGTGGCTTTAATCTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAG-GTTCGCCGTTGTGGCGTTAATCTGTTCC
* * *
55722524 ACTGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGA
65 ACTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG
* * * * * *
55722589 AAGCAAGATTCACTGTTGTGGCGTTAATCTGTTCCACTGCACCACTTGAGAAGTAAGATTCACTG
130 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTCGCTG
55722654 TTGTAG
195 TTGTAG
* * *
55722660 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCCATTGTGGCATTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
* * * *
55722725 CTGCACCGCTTGAGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGA
66 CTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGA
* * * *
55722790 AGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACTGCCTGGGAAGTAA
131 AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAA
55722845 AATTTGTATT
Statistics
Matches: 843, Mismatches: 103, Indels: 48
0.85 0.10 0.05
Matches are distributed among these distances:
185 152 0.18
186 1 0.00
187 1 0.00
190 2 0.00
193 1 0.00
195 2 0.00
198 1 0.00
199 5 0.01
200 671 0.80
201 7 0.01
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (200 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGGTTCGCCGTTGTGGCGTTAATCTGTTCCA
CTGCATCGCCTGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGA
AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGAGAAGTAAGATTCGCTGT
TGTAG
Found at i:55722242 original size:85 final size:85
Alignment explanation
Indices: 55722094--55722266 Score: 231
Period size: 85 Copynumber: 2.0 Consensus size: 85
55722084 TTTTAATTGC
* * * * * **
55722094 AATGTCGGGGAAGCAAGGTTCGCAGTTGTGGCGTTAATCTGTTACACTGCATCGCTTGAGAAGTA
1 AATGTCGGGGAAGCAAGATTCCCAGATGTGGCGTTAATCTATTACACTGCACCGCCAGAGAAGTA
55722159 AGATTCGCTGTTGTAGCTTT
66 AGATTCGCTGTTGTAGCTTT
* * * *
55722179 AATGTCGGGGAAGCAAGATTCACCA-ATGTGGCTTTAATCTATTCCATTGCACCGCCAGGGAAGT
1 AATGTCGGGGAAGCAAGATTC-CCAGATGTGGCGTTAATCTATTACACTGCACCGCCAGAGAAGT
55722243 AAGATTCGCTGTTGTAGCTTT
65 AAGATTCGCTGTTGTAGCTTT
55722264 AAT
1 AAT
55722267 CTTTTTGACT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
85 74 0.97
86 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (85 bp):
AATGTCGGGGAAGCAAGATTCCCAGATGTGGCGTTAATCTATTACACTGCACCGCCAGAGAAGTA
AGATTCGCTGTTGTAGCTTT
Found at i:55722263 original size:50 final size:50
Alignment explanation
Indices: 55722186--55722844 Score: 396
Period size: 50 Copynumber: 13.2 Consensus size: 50
55722176 TTTAATGTCG
* *** * * * * *
55722186 GGGAAGCAAGATTCACCAATGTGGCTTTAATCTATTCCATTGCACCGCCA
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* ** ***
55722236 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTGACTGCAATATC-
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * * ** * *
55722285 GAGGAAGCAAGATTCACCGATGTGGCTTTAATCTAGTCCAATGCATCGCCT
1 G-GGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * ** *** *
55722336 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATATCG
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * * * *
55722386 GGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
** * * *
55722436 AGGG-AGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCG
1 -GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * * *
55722486 GGGAAG-AAGAATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCT
1 GGGAAGTAAG-ATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * ** * *
55722536 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * * * * *
55722585 GGGAAAGCAAGATTCACTGTTGTGGCGTTAATCTGTTCCACTGCACCACTT
1 GGG-AAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* ** * *
55722636 GAGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTC-
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * ** * * * * *
55722685 GAGGAAGCAAGGTTCGCCATTGTGGCATTAATCTGTTCCACTGCACCGCTT
1 G-GGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* * * ** * *
55722736 GAGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTC-
1 GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
* *** * * *
55722785 GAGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTAC-ACTGCCT
1 G-GGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAAC-GCCT
55722836 GGGAAGTAA
1 GGGAAGTAA
55722845 AATTTGTATT
Statistics
Matches: 434, Mismatches: 162, Indels: 26
0.70 0.26 0.04
Matches are distributed among these distances:
49 13 0.03
50 410 0.94
51 11 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTCCACTGCAACGCCT
Found at i:55722360 original size:100 final size:100
Alignment explanation
Indices: 55722179--55722844 Score: 955
Period size: 100 Copynumber: 6.7 Consensus size: 100
55722169 TTGTAGCTTT
* * * * *
55722179 AATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTATTCCATTGCACCGCCAGGGAAGTA
1 AATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTA
*
55722244 AGATTCGCTGTTGTAGCTTTAATCTTTTTGACTGC
66 AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* * * *
55722279 AATATCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTAG-TCCAATGCATCGCCTGGGGAGT
1 AATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCT-GTTCCACTGCACCGCCTGGGAAGT
*
55722343 AAGATTCGCTGTTGTAGCTTTAATATTTTTAACTGC
65 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* *
55722379 AATATCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTAGGG-AGT
1 AATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCT-GGGAAGT
*
55722443 AAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGC
65 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* * *
55722479 AATGTCGGGGAAG-AAGAATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGCCTGGGGAGT
1 AATGTCGAGGAAGCAAG-ATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
55722543 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
65 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* * * * * *
55722579 AATGTCG-GGAAAGCAAGATTCACTGTTGTGGCGTTAATCTGTTCCACTGCACCACTTGAGAAGT
1 AATGTCGAGG-AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
*
55722643 AAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGC
65 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* * * * *
55722679 AATGTCGAGGAAGCAAGGTTCGCC-ATTGTGGCATTAATCTGTTCCACTGCACCGCTTGAGAAGT
1 AATGTCGAGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGT
*
55722743 AAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGC
65 AAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
* * *
55722779 AATGTCGAGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACTGCCTGGGAAGTA
1 AATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTA
55722844 A
66 A
55722845 AATTTGTATT
Statistics
Matches: 514, Mismatches: 42, Indels: 20
0.89 0.07 0.03
Matches are distributed among these distances:
99 9 0.02
100 496 0.96
101 9 0.02
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
AATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAAGTA
AGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGC
Found at i:55724142 original size:6 final size:6
Alignment explanation
Indices: 55724131--55724188 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
55724121 CTTCTCTCTT
* * * *
55724131 TTTTCA TTTTCA TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTTC-
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA -TTTTCA
55724179 TTTTC- TTTTC
1 TTTTCA TTTTC
55724189 TTCTTTTTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
5 10 0.21
6 33 0.70
7 4 0.09
ACGTcount: A:0.12, C:0.14, G:0.05, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:55727657 original size:15 final size:16
Alignment explanation
Indices: 55727628--55727657 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
55727618 GTTTATATAA
55727628 TGTGCGAATATATATG
1 TGTGCGAATATATATG
55727644 TGTGC-AATATATAT
1 TGTGCGAATATATAT
55727658 ATATGTGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (16 bp):
TGTGCGAATATATATG
Found at i:55727950 original size:41 final size:41
Alignment explanation
Indices: 55727889--55728057 Score: 266
Period size: 41 Copynumber: 4.1 Consensus size: 41
55727879 ATTCGTGAAT
* *
55727889 TGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* *
55727930 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATA
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
* *
55727971 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGAGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
55728012 TGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATC
1 TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
55728053 CGAAT
1 TGAAT
55728058 ATGATGAATT
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 116 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (41 bp):
TGAATCAGGCTATAAACCTAGCAGGCTAAGTGCCGGTGATC
Found at i:55728026 original size:82 final size:82
Alignment explanation
Indices: 55727889--55728051 Score: 308
Period size: 82 Copynumber: 2.0 Consensus size: 82
55727879 ATTCGTGAAT
*
55727889 TGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGAGATCTGAATCAGGCTATAAGCCTAGCAG
55727954 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
*
55727971 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGAGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGAGATCTGAATCAGGCTATAAGCCTAGCAG
55728036 GCTAAGTGCCGGTGAT
66 GCTAAGTGCCGGTGAT
55728052 CCGAATATGA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGCAAGCTAAGTGCCGGAGATCTGAATCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:55728311 original size:37 final size:37
Alignment explanation
Indices: 55728242--55728359 Score: 130
Period size: 37 Copynumber: 3.5 Consensus size: 37
55728232 TTATGTGTGC
* *
55728242 ATATGTAGGCATTCGGCATAGGTGGATAT-A---TAT
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
55728275 -T-TGTATGCATTCGGCATAGGTAGATATAAGTGTAT
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
* *
55728310 ATATGTATGCATTCGGCATAGGTGGGTATAAGTG-A-
1 ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
55728345 ATATG--TGCATTCGGC
1 ATATGTATGCATTCGGC
55728360 CTTTATAGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
31 24 0.32
32 2 0.03
33 10 0.13
35 8 0.11
36 2 0.03
37 29 0.39
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.34
Consensus pattern (37 bp):
ATATGTATGCATTCGGCATAGGTAGATATAAGTGTAT
Found at i:55731948 original size:3 final size:3
Alignment explanation
Indices: 55731942--55732011 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
55731932 TACAAAGTGG
55731942 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
55731990 TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA T
55732012 GAAACATTCA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:55733689 original size:30 final size:30
Alignment explanation
Indices: 55733623--55733711 Score: 125
Period size: 25 Copynumber: 3.1 Consensus size: 30
55733613 TCCATATTTA
55733623 TGGAAAGTCAAAGATATGGGTATCAAATA-
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
55733652 --G--AGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
55733678 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
55733709 TGG
1 TGG
55733712 CATAAGAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
25 24 0.45
27 1 0.02
28 1 0.02
30 19 0.36
31 8 0.15
ACGTcount: A:0.40, C:0.07, G:0.27, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:55738294 original size:25 final size:25
Alignment explanation
Indices: 55738260--55738310 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
55738250 ATATTTATGG
55738260 AAAGTCAAAGATATGAGTATCAAAT
1 AAAGTCAAAGATATGAGTATCAAAT
*
55738285 AAAGTCAAAGATATGGGTATCAAAT
1 AAAGTCAAAGATATGAGTATCAAAT
55738310 A
1 A
55738311 TTGGAAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.51, C:0.08, G:0.18, T:0.24
Consensus pattern (25 bp):
AAAGTCAAAGATATGAGTATCAAAT
Found at i:55738321 original size:30 final size:30
Alignment explanation
Indices: 55738257--55738345 Score: 116
Period size: 30 Copynumber: 3.1 Consensus size: 30
55738247 TCCATATTTA
*
55738257 TGGAAAGTCAAAGATATGAGTATC-AA-A-
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
55738284 T--AAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
55738312 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
55738343 TGG
1 TGG
55738346 CATAAGAAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 8
0.84 0.03 0.12
Matches are distributed among these distances:
25 20 0.37
26 2 0.04
27 2 0.04
28 1 0.02
30 21 0.39
31 8 0.15
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:55743262 original size:24 final size:24
Alignment explanation
Indices: 55743234--55743285 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
55743224 TTAGTAGGTC
*
55743234 AAATAAACTAT-GCTAATAAATGCT
1 AAATAAACTATAG-TAATAAATACT
* *
55743258 AAATATATTATAGTAATAAATACT
1 AAATAAACTATAGTAATAAATACT
55743282 AAAT
1 AAAT
55743286 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.33
Consensus pattern (24 bp):
AAATAAACTATAGTAATAAATACT
Found at i:55767284 original size:102 final size:102
Alignment explanation
Indices: 55767103--55767303 Score: 321
Period size: 102 Copynumber: 2.0 Consensus size: 102
55767093 GAATATAAAG
* * *
55767103 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
* * *
55767168 ATATGTGAAGGGGGTTGCTCAGTGCTGATTCCCCCAA
66 AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
* * *
55767205 GGGGTTGCTAAGTGCTGATTCTCCGACTCATTGGTGGTTGCTAAGTGTTGATCCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
55767270 AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
55767304 GAATCACTGG
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 90 1.00
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.32
Consensus pattern (102 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATCTT
AAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:55775870 original size:22 final size:22
Alignment explanation
Indices: 55775845--55775886 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
55775835 TCCTTTATTC
55775845 ATCATCCCTCAAGAATCCCTCA
1 ATCATCCCTCAAGAATCCCTCA
* * *
55775867 ATCATTCTTCAAGGATCCCT
1 ATCATCCCTCAAGAATCCCT
55775887 TATTCATTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.29
Consensus pattern (22 bp):
ATCATCCCTCAAGAATCCCTCA
Found at i:55775893 original size:22 final size:22
Alignment explanation
Indices: 55775853--55775896 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
55775843 TCATCATCCC
55775853 TCAAGAATCCCTCAATCATTCT
1 TCAAGAATCCCTCAATCATTCT
* * *
55775875 TCAAGGATCCCTTATTCATTCT
1 TCAAGAATCCCTCAATCATTCT
55775897 CATCATTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.07, T:0.36
Consensus pattern (22 bp):
TCAAGAATCCCTCAATCATTCT
Found at i:55785451 original size:20 final size:20
Alignment explanation
Indices: 55785426--55785464 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
55785416 TGTAATTACC
55785426 GGTTGTTCATCTAGATCACA
1 GGTTGTTCATCTAGATCACA
*
55785446 GGTTGTTCATCTCGATCAC
1 GGTTGTTCATCTAGATCAC
55785465 GGTAATGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (20 bp):
GGTTGTTCATCTAGATCACA
Found at i:55793018 original size:29 final size:28
Alignment explanation
Indices: 55792983--55793060 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
55792973 TCATGAGATT
55792983 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
55793013 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
55793040 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
55793061 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:55793278 original size:144 final size:145
Alignment explanation
Indices: 55793038--55793307 Score: 463
Period size: 144 Copynumber: 1.9 Consensus size: 145
55793028 GTTTAAAGTA
* *
55793038 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTCT
* *
55793103 ATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
55793168 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
* *
55793183 CATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATGTGTGC-AACCCAATATATATTTTAC
1 CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTT-C
55793247 -ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTA
65 TATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTA
55793308 TGTACCTTGA
Statistics
Matches: 118, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
144 76 0.64
145 42 0.36
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:55799540 original size:11 final size:11
Alignment explanation
Indices: 55799524--55799548 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
55799514 TGGTTGAGCC
55799524 CTTTCTGATAG
1 CTTTCTGATAG
55799535 CTTTCTGATAG
1 CTTTCTGATAG
55799546 CTT
1 CTT
55799549 GTCCCTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (11 bp):
CTTTCTGATAG
Found at i:55818128 original size:12 final size:13
Alignment explanation
Indices: 55818111--55818140 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
55818101 CGTTAGTCCC
55818111 TTTTTCTTTATT-
1 TTTTTCTTTATTA
55818123 TTTTTCTTTATTA
1 TTTTTCTTTATTA
55818136 TTTTT
1 TTTTT
55818141 ATGTTTGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTCTTTATTA
Found at i:55830843 original size:42 final size:42
Alignment explanation
Indices: 55830790--55830873 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
55830780 CTATCCATGC
55830790 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
* *
55830832 ATGTGTGTAACTTTTCATCTTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
55830874 TTCAAGTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (42 bp):
ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
Found at i:55830877 original size:23 final size:23
Alignment explanation
Indices: 55830803--55830892 Score: 98
Period size: 23 Copynumber: 4.1 Consensus size: 23
55830793 TGTATAACTT
55830803 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
* * * * *
55830826 TTCATA---ATGTGT-GTAACTT
1 TTCATATTCAAGTCTCTTCACTC
*
55830845 TTCATCTTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
55830868 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
55830891 TT
1 TT
55830893 TTAACTTTTC
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 9 0.18
20 4 0.08
22 4 0.08
23 34 0.67
ACGTcount: A:0.21, C:0.27, G:0.07, T:0.46
Consensus pattern (23 bp):
TTCATATTCAAGTCTCTTCACTC
Found at i:55835073 original size:21 final size:18
Alignment explanation
Indices: 55835041--55835083 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 18
55835031 TTGGAGAAAT
*
55835041 AAAATAAAGAAAATGATAA
1 AAAATAAAGAAAA-GAGAA
55835060 AAAATATAATGAAAAGAGAA
1 AAAATA-AA-GAAAAGAGAA
55835080 AAAA
1 AAAA
55835084 ATTTATATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 10 0.48
21 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.14
Consensus pattern (18 bp):
AAAATAAAGAAAAGAGAA
Found at i:55835083 original size:20 final size:20
Alignment explanation
Indices: 55835034--55835085 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
55835024 TCAATATTTG
55835034 GAGAAATAAAATAAAGAAAAT
1 GAGAAA-AAAATAAAGAAAAT
* *
55835055 GATAAAAAATATAATGAAAA-
1 GAGAAAAAA-ATAAAGAAAAT
55835075 GAGAAAAAAAT
1 GAGAAAAAAAT
55835086 TTATATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.07
20 11 0.41
21 14 0.52
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.15
Consensus pattern (20 bp):
GAGAAAAAAATAAAGAAAAT
Found at i:55835084 original size:21 final size:22
Alignment explanation
Indices: 55835034--55835095 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
55835024 TCAATATTTG
55835034 GAGAAATAAAATA-AA-GAAAAT
1 GAGAAA-AAAATATAATGAAAAT
*
55835055 GA-TAAAAAATATAATGAAAA-
1 GAGAAAAAAATATAATGAAAAT
*
55835075 GAGAAAAAAATTTATATGAAA
1 GAGAAAAAAATATA-ATGAAA
55835096 GAAATAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 6 0.18
20 6 0.18
21 16 0.47
22 6 0.18
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (22 bp):
GAGAAAAAAATATAATGAAAAT
Found at i:55835104 original size:22 final size:22
Alignment explanation
Indices: 55835056--55835104 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
55835046 AAAGAAAATG
*
55835056 ATAAAAAATATAATGAAAAGAG
1 ATAAAAAATATAATGAAAAGAA
*
55835078 A-AAAAAATTTATATG-AAAGAA
1 ATAAAAAATATA-ATGAAAAGAA
55835099 ATAAAA
1 ATAAAA
55835105 TTCCTTATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.20
Consensus pattern (22 bp):
ATAAAAAATATAATGAAAAGAA
Found at i:55835326 original size:42 final size:42
Alignment explanation
Indices: 55835273--55835356 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
55835263 CTATCCATGC
55835273 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
* *
55835315 ATGTGTGTAACTTTTCATCTTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
55835357 TTCAAGTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (42 bp):
ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
Found at i:55835360 original size:23 final size:23
Alignment explanation
Indices: 55835286--55835375 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 23
55835276 TGTATAACTT
55835286 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
* * * * *
55835309 TTCATA---ATGTGT-GTAACTT
1 TTCATATTCAAGTCTCTTCACTC
*
55835328 TTCATCTTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
*
55835351 TTCATATTCAAGTCTCTTCATTC
1 TTCATATTCAAGTCTCTTCACTC
55835374 TT
1 TT
55835376 TTAACTTTTC
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
19 9 0.18
20 4 0.08
22 4 0.08
23 33 0.66
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.47
Consensus pattern (23 bp):
TTCATATTCAAGTCTCTTCACTC
Found at i:55836631 original size:42 final size:42
Alignment explanation
Indices: 55836579--55836730 Score: 198
Period size: 42 Copynumber: 3.6 Consensus size: 42
55836569 CAAACAAAAA
* * *
55836579 CGCCGCTAAAGACCATATTCTTTAGCGGCGTTTTTGTT-TGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT-TTCTATG
* *
55836621 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTATG
* * *
55836663 CGCCTCTAAAGAGCATGTTCTTTAGCGGCATTTTTTTTCTATG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC-GTTTTTTTCTATG
*
55836706 CGCCGCTAAAGAACATGGTCTTTAG
1 CGCCGCTAAAGAACATGTTCTTTAG
55836731 GTGCCGTTAA
Statistics
Matches: 97, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.02
42 62 0.64
43 33 0.34
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTATG
Found at i:55836743 original size:26 final size:26
Alignment explanation
Indices: 55836707--55836756 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
55836697 TTTTCTATGC
55836707 GCCGCTAAAGAACATGGTCTTTAGGT
1 GCCGCTAAAGAACATGGTCTTTAGGT
*
55836733 GCCGTTAAAGAACATGGTCTTTAG
1 GCCGCTAAAGAACATGGTCTTTAG
55836757 CGGCGTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
GCCGCTAAAGAACATGGTCTTTAGGT
Found at i:55837196 original size:21 final size:21
Alignment explanation
Indices: 55837128--55837198 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
55837118 TTTTGCTCTG
*
55837128 CTCTGCTTCTCTCGCTGT-AGC
1 CTCTGCTTCCCTCGCT-TCAGC
* * *
55837149 CTCCGCTTCCCTTGCTGCAG-
1 CTCTGCTTCCCTCGCTTCAGC
*
55837169 CTGCTGCTTCCCTCGCTTCCGC
1 CT-CTGCTTCCCTCGCTTCAGC
55837191 CTCTGCTT
1 CTCTGCTT
55837199 TAAGTTGTAG
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
20 2 0.05
21 35 0.90
22 2 0.05
ACGTcount: A:0.03, C:0.44, G:0.18, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTTCAGC
Found at i:55842771 original size:25 final size:23
Alignment explanation
Indices: 55842743--55842876 Score: 83
Period size: 25 Copynumber: 5.4 Consensus size: 23
55842733 CATGGAAGTA
*
55842743 ATGTAAGCTATGTAAGTAATGTATT
1 ATGTAAGTTATGT-A-TAATGTATT
* *
55842768 ATGTAAGTTGTGTACTACAT-CATT
1 ATGTAAGTTATGTA-TA-ATGTATT
* *
55842792 ATGTGAGTTGTGTATAATGTATGTT
1 ATGTAAGTTATGTATAATGTA--TT
* *
55842817 AAG-AAGGTTATGTATAATGTAAGTA
1 ATGTAA-GTTATGTATAATGT-A-TT
*
55842842 ATGTAAGCTATGTAAGTAATGTATT
1 ATGTAAGTTATGT-A-TAATGTATT
55842867 ATGTAAGTTA
1 ATGTAAGTTA
55842877 AGAAGGTTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
22 2 0.02
23 3 0.03
24 20 0.23
25 50 0.58
26 5 0.06
27 6 0.07
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATGTAAGTTATGTATAATGTATT
Found at i:55842843 original size:9 final size:9
Alignment explanation
Indices: 55842833--55843687 Score: 873
Period size: 9 Copynumber: 95.2 Consensus size: 9
55842823 GTTATGTATA
*
55842833 ATGTAAGTA
1 ATGTAAGTT
*
55842842 ATGTAAGCT
1 ATGTAAGTT
*
55842851 ATGTAAGTA
1 ATGTAAGTT
55842860 ATGT-A-TT
1 ATGTAAGTT
55842867 ATGTAAGTT
1 ATGTAAGTT
*
55842876 AAG-AAGGTT
1 ATGTAA-GTT
*
55842885 ATGT-A-TA
1 ATGTAAGTT
55842892 ATGTAAGTT
1 ATGTAAGTT
*
55842901 ACT-TAATTT
1 A-TGTAAGTT
55842910 ATGTAAGTT
1 ATGTAAGTT
55842919 ATGTAAGTT
1 ATGTAAGTT
* *
55842928 ATTTAATTT
1 ATGTAAGTT
*
55842937 ATGTAAGCT
1 ATGTAAGTT
*
55842946 ATGTAATTT
1 ATGTAAGTT
55842955 ATGTAAGTT
1 ATGTAAGTT
55842964 ATGTAAGTT
1 ATGTAAGTT
55842973 ATGTAAGTT
1 ATGTAAGTT
*
55842982 ATTTAA-TT
1 ATGTAAGTT
*
55842990 AACT-TAATTT
1 -A-TGTAAGTT
55843000 ATGTAAGTT
1 ATGTAAGTT
*
55843009 ATGTAAGAT
1 ATGTAAGTT
*
55843018 ATTTAA-TT
1 ATGTAAGTT
55843026 AATGTAAGTT
1 -ATGTAAGTT
55843036 ATGTAAGTT
1 ATGTAAGTT
*
55843045 ACT-TAATTT
1 A-TGTAAGTT
55843054 ATGTAAGTT
1 ATGTAAGTT
55843063 ATGTAAGTT
1 ATGTAAGTT
* *
55843072 ATTTAATTT
1 ATGTAAGTT
55843081 ATGTAAGTT
1 ATGTAAGTT
55843090 ATGTAAGTT
1 ATGTAAGTT
55843099 ATGTTAAGTT
1 ATG-TAAGTT
* *
55843109 ATTTAATTT
1 ATGTAAGTT
*
55843118 ACT-TAATTT
1 A-TGTAAGTT
55843127 ATGTAAGTT
1 ATGTAAGTT
*
55843136 ATGTAAGAT
1 ATGTAAGTT
*
55843145 ATTTAAGTT
1 ATGTAAGTT
55843154 ATGTAAGTT
1 ATGTAAGTT
55843163 ATGTAAGTT
1 ATGTAAGTT
* *
55843172 ATTTAATTT
1 ATGTAAGTT
55843181 ATGTAAGTT
1 ATGTAAGTT
55843190 ATGTAAGTT
1 ATGTAAGTT
* *
55843199 ATTTAATTT
1 ATGTAAGTT
*
55843208 ACT-TAATTT
1 A-TGTAAGTT
55843217 ATGTAAGTT
1 ATGTAAGTT
55843226 ATGTAAGTT
1 ATGTAAGTT
* *
55843235 ATTTAATTT
1 ATGTAAGTT
55843244 ATGTAAGTT
1 ATGTAAGTT
55843253 ATGTAAGTT
1 ATGTAAGTT
55843262 ATGTTAAGTT
1 ATG-TAAGTT
* *
55843272 ATTTAATTT
1 ATGTAAGTT
*
55843281 ACT-TAATTT
1 A-TGTAAGTT
55843290 ATGTAAGTT
1 ATGTAAGTT
*
55843299 ATGTAAGAT
1 ATGTAAGTT
* *
55843308 ATTTAATTT
1 ATGTAAGTT
55843317 ATGTAAGTT
1 ATGTAAGTT
55843326 ATGTAAGTT
1 ATGTAAGTT
* *
55843335 ATTTAATTT
1 ATGTAAGTT
55843344 ATGTAAGTT
1 ATGTAAGTT
55843353 ATGTAAGTT
1 ATGTAAGTT
* *
55843362 ATTTAATTT
1 ATGTAAGTT
*
55843371 ACT-TAATTT
1 A-TGTAAGTT
55843380 ATGTAAGTT
1 ATGTAAGTT
55843389 ATGTAAGTT
1 ATGTAAGTT
* *
55843398 ATTTAATTT
1 ATGTAAGTT
*
55843407 ACT-TAATTT
1 A-TGTAAGTT
55843416 ATGTAAGTT
1 ATGTAAGTT
55843425 ATGTAAGTT
1 ATGTAAGTT
* *
55843434 ATTTAATTT
1 ATGTAAGTT
55843443 ATGTAAGTT
1 ATGTAAGTT
55843452 ATGTAAGTT
1 ATGTAAGTT
55843461 ATGTAAGTT
1 ATGTAAGTT
55843470 ATGTAAGTT
1 ATGTAAGTT
* *
55843479 ATTTAATTT
1 ATGTAAGTT
*
55843488 ACT-TAATTT
1 A-TGTAAGTT
55843497 ATGTAAGTT
1 ATGTAAGTT
*
55843506 ATGTAAGAT
1 ATGTAAGTT
* *
55843515 ATTTAATTT
1 ATGTAAGTT
55843524 ATGTAAGTT
1 ATGTAAGTT
55843533 ATGTAAGTT
1 ATGTAAGTT
55843542 ATGTAAGTT
1 ATGTAAGTT
* *
55843551 ATTTAATTT
1 ATGTAAGTT
*
55843560 ACT-TAATTT
1 A-TGTAAGTT
*
55843569 ATGTAAGTA
1 ATGTAAGTT
*
55843578 ATGTAAGAT
1 ATGTAAGTT
* *
55843587 ATTTAATTT
1 ATGTAAGTT
55843596 ATGTAAGTT
1 ATGTAAGTT
55843605 ATGTAAGTT
1 ATGTAAGTT
* *
55843614 ATTTAATTT
1 ATGTAAGTT
55843623 ATGTAAGTT
1 ATGTAAGTT
55843632 ATGTAAGTT
1 ATGTAAGTT
55843641 ATGTAAGTT
1 ATGTAAGTT
* *
55843650 ATTTAATTT
1 ATGTAAGTT
*
55843659 TTGTAAGTT
1 ATGTAAGTT
55843668 ATGTAA-TT
1 ATGTAAGTT
55843676 AATGTAAGTT
1 -ATGTAAGTT
55843686 AT
1 AT
55843688 TTAATTTGTG
Statistics
Matches: 710, Mismatches: 102, Indels: 68
0.81 0.12 0.08
Matches are distributed among these distances:
7 10 0.01
8 20 0.03
9 648 0.91
10 32 0.05
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:55846761 original size:115 final size:114
Alignment explanation
Indices: 55846612--55846849 Score: 361
Period size: 115 Copynumber: 2.1 Consensus size: 114
55846602 AAATATTTGT
*
55846612 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCATCTTTATTACAGTTAAAGG
1 GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCATCTTTATTACAATTAAAGG
* * *
55846677 AAATTTGTGGCGTTTCTTC-GTAAAACGCCGGTAAAATATCACTTTTAGC
66 AAATTTGCGGCGTTTCTTCAG-AAAACGCCGATAAAATATCACCTTTAGC
* * * *
55846726 GGCGTTTTTCAAATGCGCCACTAAAGGAAAACAACAAAACGGCACCGTCTTTGTTACAATTAAAG
1 GGCGTTTTT-AAATACGCCACTAAAAGAAAACAACAAAACGGCACCATCTTTATTACAATTAAAG
*
55846791 GAAATTTGCGGCGTTTCTTCAGAAAACGCCGATAATATATCACCTTTAGC
65 GAAATTTGCGGCGTTTCTTCAGAAAACGCCGATAAAATATCACCTTTAGC
*
55846841 GGCATTTTT
1 GGCGTTTTT
55846850 TTATGAAGCG
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
114 9 0.08
115 102 0.91
116 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (114 bp):
GGCGTTTTTAAATACGCCACTAAAAGAAAACAACAAAACGGCACCATCTTTATTACAATTAAAGG
AAATTTGCGGCGTTTCTTCAGAAAACGCCGATAAAATATCACCTTTAGC
Found at i:55846772 original size:261 final size:261
Alignment explanation
Indices: 55846220--55846774 Score: 882
Period size: 261 Copynumber: 2.1 Consensus size: 261
55846210 AGAGTAAAAA
* * * *
55846220 CGCCACTAAT-AACACGGACAAAACGGCATCGTCATAAGATAACATTAAACATTTTTGCGGCGCT
1 CGCCACTAATAAAAAC-AACAAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACT
* *
55846284 TTATCTAAAGCGCCACTAATAAAAATAGGAAACGGCGTCGTTTCCTCAGCTCGTAATAAATATTT
65 TTAGCTAAAGCGCCACTAATAAAAATAGGAAACGACGTCGTTTCCTCAGCTCGTAATAAATATTT
* *
55846349 GTGGCATTTTTAAACTGCGCCACTAAAAGAAAACAACAAAACAGCACCGTCTTCATTACAGTTAA
130 GTGGCATTTTTAAACTACGCCACTAAAAGAAAACAACAAAACAGCACCATCTTCATTACAGTTAA
* *
55846414 AGGAAATTTGTGGCGTTTCTTCGTAAAACGCCGATAATATATCACCTTTAGCGGCGTTTTTCATA
195 AGGAAATTTGTGGCGTTTCTTCGTAAAACGCCGATAAAATATCACCTTTAGCGGCGTTTTTCAAA
55846479 TG
260 TG
* ** * *
55846481 CGCCACTAATAACAAGGACAAAATGGCACCGTTATAAGATAACATTAAACATTTTTGCGGCACTT
1 CGCCACTAATAAAAACAACAAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACTT
55846546 TAGCTAAAGCGCCACTAATAAAAATAGGAAACGACGTCGTTTCCTCAGCTCGTAATAAATATTTG
66 TAGCTAAAGCGCCACTAATAAAAATAGGAAACGACGTCGTTTCCTCAGCTCGTAATAAATATTTG
* * *
55846611 TGGCGTTTTTAAA-TACGCCACTAAAAGAAAACAACAAAACGGCACCATCTTTATTACAGTTAAA
131 TGGCATTTTTAAACTACGCCACTAAAAGAAAACAACAAAACAGCACCATCTTCATTACAGTTAAA
* *
55846675 GGAAATTTGTGGCGTTTCTTCGTAAAACGCCGGTAAAATATCACTTTTAGCGGCGTTTTTCAAAT
196 GGAAATTTGTGGCGTTTCTTCGTAAAACGCCGATAAAATATCACCTTTAGCGGCGTTTTTCAAAT
55846740 G
261 G
55846741 CGCCACTAA-AGGAAAACAACAAAACGGCACCGTC
1 CGCCACTAATA--AAAACAACAAAACGGCACCGTC
55846775 TTTGTTACAA
Statistics
Matches: 268, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
259 1 0.00
260 118 0.44
261 147 0.55
262 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (261 bp):
CGCCACTAATAAAAACAACAAAACGGCACCGTCATAAGATAACATTAAACATTTTTGCGGCACTT
TAGCTAAAGCGCCACTAATAAAAATAGGAAACGACGTCGTTTCCTCAGCTCGTAATAAATATTTG
TGGCATTTTTAAACTACGCCACTAAAAGAAAACAACAAAACAGCACCATCTTCATTACAGTTAAA
GGAAATTTGTGGCGTTTCTTCGTAAAACGCCGATAAAATATCACCTTTAGCGGCGTTTTTCAAAT
G
Found at i:55847332 original size:7 final size:7
Alignment explanation
Indices: 55847317--55847391 Score: 64
Period size: 7 Copynumber: 10.9 Consensus size: 7
55847307 TCTTAAATCA
*
55847317 TAAATCC
1 TAAACCC
55847324 TAAACCC
1 TAAACCC
55847331 TAAA-CC
1 TAAACCC
*
55847337 TAAAACTC
1 T-AAACCC
*
55847345 TAAACTC
1 TAAACCC
*
55847352 TAAACTC
1 TAAACCC
* *
55847359 TAAATCG
1 TAAACCC
55847366 TAAACCC
1 TAAACCC
*
55847373 TAAACCG
1 TAAACCC
55847380 TAAA-CC
1 TAAACCC
55847386 TAAACC
1 TAAACC
55847392 ATATTTTCTG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
6 8 0.14
7 46 0.82
8 2 0.04
ACGTcount: A:0.45, C:0.31, G:0.03, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:55847334 original size:21 final size:20
Alignment explanation
Indices: 55847310--55847391 Score: 76
Period size: 21 Copynumber: 4.0 Consensus size: 20
55847300 CCATAAATCT
55847310 TAAATCATAAATCCTAAACCC
1 TAAATC-TAAATCCTAAACCC
* * *
55847331 TAAACCTAAAACTCTAAACTC
1 TAAATCTAAATC-CTAAACCC
*
55847352 TAAACTCTAAATCGTAAACCC
1 TAAA-TCTAAATCCTAAACCC
*
55847373 TAAACCGTAAA-CCTAAACC
1 TAAATC-TAAATCCTAAACC
55847392 ATATTTTCTG
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
20 13 0.27
21 30 0.61
22 6 0.12
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.22
Consensus pattern (20 bp):
TAAATCTAAATCCTAAACCC
Found at i:55847342 original size:14 final size:13
Alignment explanation
Indices: 55847317--55847391 Score: 71
Period size: 14 Copynumber: 5.5 Consensus size: 13
55847307 TCTTAAATCA
55847317 TAAATCCTAAACCC
1 TAAA-CCTAAACCC
*
55847331 TAAACCTAAAACTC
1 TAAACCT-AAACCC
*
55847345 TAAACTCTAAACTC
1 TAAAC-CTAAACCC
*
55847359 TAAATCGTAAACCC
1 TAAA-CCTAAACCC
55847373 TAAACCGTAAA-CC
1 TAAACC-TAAACCC
55847386 TAAACC
1 TAAACC
55847392 ATATTTTCTG
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.23
14 38 0.72
15 3 0.06
ACGTcount: A:0.45, C:0.31, G:0.03, T:0.21
Consensus pattern (13 bp):
TAAACCTAAACCC
Found at i:55847559 original size:20 final size:21
Alignment explanation
Indices: 55847523--55847570 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
55847513 TTCAATTTCC
55847523 AAACT-AAACCCTAAAACCCA
1 AAACTCAAACCCTAAAACCCA
* *
55847543 AAACTCAAA-CCTTAAACCCT
1 AAACTCAAACCCTAAAACCCA
55847563 AAACTCAA
1 AAACTCAA
55847571 TCTCTAACAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (21 bp):
AAACTCAAACCCTAAAACCCA
Found at i:55847749 original size:22 final size:22
Alignment explanation
Indices: 55847721--55847762 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
55847711 TGCATTGAAA
**
55847721 CCCTAACTGTAACCCCTAAATC
1 CCCTAACCCTAACCCCTAAATC
55847743 CCCTAACCCTAACCCCTAAA
1 CCCTAACCCTAACCCCTAAA
55847763 GCATAACACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.45, G:0.02, T:0.19
Consensus pattern (22 bp):
CCCTAACCCTAACCCCTAAATC
Found at i:55848432 original size:73 final size:72
Alignment explanation
Indices: 55848348--55848487 Score: 192
Period size: 72 Copynumber: 1.9 Consensus size: 72
55848338 CGCTTTTGTC
* * * * *
55848348 AAAGCGCCGCTAATTCCACGAAAGCTGA-GAAAACGACACCGTTTGGCTTAGGGTTTTTAGTGGC
1 AAAGCGCCGCTAAATCC-CAAAAACT-ACGAAAACGACACCGTTTGGCTTAGGATTATTAGTGGC
55848412 GCTTCCCCA
64 GCTTCCCCA
* *
55848421 AAAGCGCCGCTAAATCCCAAAAACTACGGAAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGC
1 AAAGCGCCGCTAAATCCCAAAAACTACGAAAACGACACCGTTTGGCTTAGGATTATTAGTGGCGC
55848486 TT
66 TT
55848488 AATTAAAAAC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
71 1 0.02
72 42 0.71
73 16 0.27
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (72 bp):
AAAGCGCCGCTAAATCCCAAAAACTACGAAAACGACACCGTTTGGCTTAGGATTATTAGTGGCGC
TTCCCCA
Found at i:55848507 original size:72 final size:72
Alignment explanation
Indices: 55848378--55848527 Score: 185
Period size: 72 Copynumber: 2.1 Consensus size: 72
55848368 AAAGCTGAGA
* * * ** *
55848378 AAACGACACCGTTTGGCTTAGGGTTTTTAGTGGCGCTTCCCCAAAAGCGCCGCTAAAT-CCCAAA
1 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTAACCAAAAACGCCGCTAAATCCCCAAA
55848442 AACTACGG
66 AACT-CGG
** * *
55848450 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTAATTAAAAACGTCGGTAAATCCCCAAA
1 AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTAACCAAAAACGCCGCTAAATCCCCAAA
*
55848515 ACCTCGG
66 AACTCGG
55848522 AAACGG
1 AAACGG
55848528 TGTCATTGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
72 57 0.86
73 9 0.14
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (72 bp):
AAACGGCACCGTTTGGCTTAGGATTATTAGTGGCGCTTAACCAAAAACGCCGCTAAATCCCCAAA
AACTCGG
Found at i:55861456 original size:21 final size:21
Alignment explanation
Indices: 55861403--55861456 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 21
55861393 GAAGATTTGG
55861403 TTTTTTATTAGTATAATATAT
1 TTTTTTATTAGTATAATATAT
*
55861424 TTAGCATTTATTAGTATAA-ATAT
1 TT---TTTTATTAGTATAATATAT
55861447 CTTTTTTATT
1 -TTTTTTATT
55861457 TCTTTCCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
21 8 0.30
23 4 0.15
24 15 0.56
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.59
Consensus pattern (21 bp):
TTTTTTATTAGTATAATATAT
Found at i:55866453 original size:18 final size:18
Alignment explanation
Indices: 55866430--55866465 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
55866420 CATTTTAGGT
55866430 CCACACGGCATGAGACAC
1 CCACACGGCATGAGACAC
55866448 CCACACGGCATGAGACAC
1 CCACACGGCATGAGACAC
55866466 AAGCGTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.39, G:0.22, T:0.06
Consensus pattern (18 bp):
CCACACGGCATGAGACAC
Found at i:55866783 original size:8 final size:8
Alignment explanation
Indices: 55866770--55866843 Score: 66
Period size: 8 Copynumber: 9.4 Consensus size: 8
55866760 GTTAAAATAT
55866770 ATATTATA
1 ATATTATA
55866778 ATATTATA
1 ATATTATA
55866786 ATATTATA
1 ATATTATA
55866794 ATATTAT-
1 ATATTATA
*
55866801 ATCTTA-A
1 ATATTATA
*
55866808 TTATTA-A
1 ATATTATA
*
55866815 GTATATATATT
1 --ATAT-TATA
55866826 ATATTAT-
1 ATATTATA
55866833 ATATTATA
1 ATATTATA
55866841 ATA
1 ATA
55866844 AGTAAATGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
7 17 0.31
8 29 0.53
9 7 0.13
10 2 0.04
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (8 bp):
ATATTATA
Found at i:55866791 original size:16 final size:15
Alignment explanation
Indices: 55866767--55866843 Score: 84
Period size: 16 Copynumber: 4.9 Consensus size: 15
55866757 AAAGTTAAAA
55866767 TATATATTATAATAT
1 TATATATTATAATAT
55866782 TATAATATTATAATAT
1 TAT-ATATTATAATAT
* *
55866798 TATATCTTA-ATTAT
1 TATATATTATAATAT
*
55866812 TAAGTATATATATTATAT
1 T-A-TATAT-TATAATAT
55866830 TATATATTATAATA
1 TATATATTATAATA
55866844 AGTAAATGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
14 5 0.10
15 15 0.29
16 24 0.47
17 3 0.06
18 4 0.08
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (15 bp):
TATATATTATAATAT
Found at i:55870144 original size:30 final size:31
Alignment explanation
Indices: 55870108--55870168 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
55870098 TATCAGTACA
*
55870108 GTGTGGGCCTTAGCCCATTACAGTAA-CAGT
1 GTGTGGGCCTTAGCCCAATACAGTAATCAGT
55870138 GTGTGGGCCTTAGCCCAATACAGTAATCAGT
1 GTGTGGGCCTTAGCCCAATACAGTAATCAGT
55870169 ACAATGCAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (31 bp):
GTGTGGGCCTTAGCCCAATACAGTAATCAGT
Found at i:55870441 original size:27 final size:27
Alignment explanation
Indices: 55870381--55870723 Score: 342
Period size: 27 Copynumber: 12.7 Consensus size: 27
55870371 GGAGTATAAA
* * *
55870381 AGTCATTTTACCCGATGGGGGGTATTTC
1 AGTCATTTTACCC-TTCGAGGGTATTTC
55870409 -GATCATTTTACCCTTCGAGGGTATTTC
1 AG-TCATTTTACCCTTCGAGGGTATTTC
55870436 AGTCA-TTTACCCTTCGAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* *
55870462 GGTCATTTTACCCTTTGAGGGTATTT-
1 AGTCATTTTACCCTTCGAGGGTATTTC
* * * *
55870488 TGATCATTTTGCCCTTCAAGGGGTATTTT
1 AG-TCATTTTACCCTTCGA-GGGTATTTC
*
55870517 GGTCATTTTACCCTTCG-GGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* *
55870543 GGTCATTTTACCCTTTGAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* *
55870570 -GATCATTTTACCCTTTGGGGGTATTTC
1 AG-TCATTTTACCCTTCGAGGGTATTTC
55870597 AGTCATTTTACCCTTCGAGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
55870624 -GATCATTTTACCCTTC-AGGGGTATTTC
1 AG-TCATTTTACCCTTCGA-GGGTATTTC
* * * *
55870651 AATTATTTTACCCTTTGGGGGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* * * *
55870678 AGTTATTTTACCTTTTGAGAGTATTTC
1 AGTCATTTTACCCTTCGAGGGTATTTC
* *
55870705 -GATCATTGTACTCTTCGAG
1 AG-TCATTTTACCCTTCGAG
55870724 TATATTACGA
Statistics
Matches: 271, Mismatches: 30, Indels: 29
0.82 0.09 0.09
Matches are distributed among these distances:
26 54 0.20
27 182 0.67
28 34 0.13
29 1 0.00
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (27 bp):
AGTCATTTTACCCTTCGAGGGTATTTC
Found at i:55870522 original size:81 final size:82
Alignment explanation
Indices: 55870382--55870711 Score: 411
Period size: 81 Copynumber: 4.1 Consensus size: 82
55870372 GAGTATAAAA
* * * *
55870382 GTCATTTTACCCGATGGGGGGTATTTCGATCATTTTACCCTTCGA-GGGTATTTCAGTCA-TTTA
1 GTCATTTTACCC-TTTGAGGGTATTTCGATCATTTTACCCTTCAAGGGGTATTTCAGTCATTTTA
55870445 CCCTTCGAGGGTATTTCG
65 CCCTTCGAGGGTATTTCG
* * **
55870463 GTCATTTTACCCTTTGAGGGTATTTTGATCATTTTGCCCTTCAAGGGGTATTTTGGTCATTTTAC
1 GTCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCAAGGGGTATTTCAGTCATTTTAC
55870528 CCTTCG-GGGTATTTCG
66 CCTTCGAGGGTATTTCG
**
55870544 GTCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTT-TGGGGGTATTTCAGTCATTTTAC
1 GTCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCAAGGGGTATTTCAGTCATTTTAC
55870608 CCTTCGAGGGTATTTCG
66 CCTTCGAGGGTATTTCG
* * * * ** *
55870625 ATCATTTTACCC-TTCAGGGGTATTTCAATTATTTTACCCTT-TGGGGGTATTTCAGTTATTTTA
1 GTCATTTTACCCTTTGA-GGGTATTTCGATCATTTTACCCTTCAAGGGGTATTTCAGTCATTTTA
* * *
55870688 CCTTTTGAGAGTATTTCG
65 CCCTTCGAGGGTATTTCG
*
55870706 ATCATT
1 GTCATT
55870712 GTACTCTTCG
Statistics
Matches: 223, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
80 54 0.24
81 158 0.71
82 11 0.05
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.43
Consensus pattern (82 bp):
GTCATTTTACCCTTTGAGGGTATTTCGATCATTTTACCCTTCAAGGGGTATTTCAGTCATTTTAC
CCTTCGAGGGTATTTCG
Found at i:55878191 original size:38 final size:38
Alignment explanation
Indices: 55878149--55878227 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
55878139 GCAAGTAAGA
55878149 AATTTCTTGTCAGTCGTTTCAATAATTAGCAAATGGTT
1 AATTTCTTGTCAGTCGTTTCAATAATTAGCAAATGGTT
55878187 AATTTCTTGTCAGTCGTTTCAATAATTAGCAAATGGTT
1 AATTTCTTGTCAGTCGTTTCAATAATTAGCAAATGGTT
55878225 AAT
1 AAT
55878228 GGTCATTCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (38 bp):
AATTTCTTGTCAGTCGTTTCAATAATTAGCAAATGGTT
Found at i:55888706 original size:15 final size:15
Alignment explanation
Indices: 55888686--55888718 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
55888676 TATTAAATAC
55888686 TATTATTGTTTA-TAT
1 TATTATT-TTTATTAT
55888701 TATTATTTTTATTAT
1 TATTATTTTTATTAT
55888716 TAT
1 TAT
55888719 ATTATGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
TATTATTTTTATTAT
Found at i:55889826 original size:37 final size:37
Alignment explanation
Indices: 55889745--55889827 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 37
55889735 ATATGTGTGG
* *
55889745 AATTGAATCGAATATTGACTTGAAAATGGAAAAGTGA
1 AATTGAATCGAATATCGACTTGAAAATGGAAAAATGA
* *
55889782 ATTTTGAATCGAAT-TGCGA-TTGAAAGTGGAAAAAATGA
1 A-ATTGAATCGAATAT-CGACTTGAAAATGG-AAAAATGA
55889820 AATTGAAT
1 AATTGAAT
55889828 TAAAATGTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
37 17 0.45
38 21 0.55
ACGTcount: A:0.45, C:0.05, G:0.22, T:0.29
Consensus pattern (37 bp):
AATTGAATCGAATATCGACTTGAAAATGGAAAAATGA
Found at i:55889956 original size:23 final size:23
Alignment explanation
Indices: 55889930--55890039 Score: 142
Period size: 23 Copynumber: 5.0 Consensus size: 23
55889920 GCTTTGCCGG
55889930 TCAGGCACTTTATGTGTCGTATA
1 TCAGGCACTTTATGTGTCGTATA
*
55889953 TCAGGCACTTTATGTGCCGTATA
1 TCAGGCACTTTATGTGTCGTATA
55889976 TCAGGCACTTTATGTGTCG--TA
1 TCAGGCACTTTATGTGTCGTATA
**
55889997 TCAGGCAAC-TCGTGTGTCGT-T-
1 TCAGGC-ACTTTATGTGTCGTATA
55890018 TCAGGCAC-TTATGTGTCGTATA
1 TCAGGCACTTTATGTGTCGTATA
55890040 CTGATTAGGT
Statistics
Matches: 77, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
20 11 0.14
21 23 0.30
22 3 0.04
23 40 0.52
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATA
Found at i:55890415 original size:3 final size:3
Alignment explanation
Indices: 55890407--55890439 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
55890397 ATTATATTCC
55890407 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
55890440 GAGTTATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:55902103 original size:12 final size:12
Alignment explanation
Indices: 55902086--55902112 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
55902076 ATTTAACGTA
55902086 CAAGATGAAGTC
1 CAAGATGAAGTC
55902098 CAAGATGAAGTC
1 CAAGATGAAGTC
55902110 CAA
1 CAA
55902113 TGATATCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (12 bp):
CAAGATGAAGTC
Found at i:55902561 original size:15 final size:14
Alignment explanation
Indices: 55902531--55902573 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
55902521 AGTTATAACT
55902531 ATTTAAATAATATA
1 ATTTAAATAATATA
*
55902545 ATTTAAATAGTTATA
1 ATTTAAATA-ATATA
55902560 ATATTAAATGAATA
1 AT-TTAAAT-AATA
55902574 ATTATGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
14 9 0.38
15 6 0.25
16 8 0.33
17 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (14 bp):
ATTTAAATAATATA
Found at i:55916646 original size:23 final size:23
Alignment explanation
Indices: 55916572--55916661 Score: 98
Period size: 23 Copynumber: 4.1 Consensus size: 23
55916562 TGTATAACTT
55916572 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
* * * * *
55916595 TTCATA---ATGTGT-GTAACTT
1 TTCATATTCAAGTCTCTTCACTC
*
55916614 TTCATCTTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
55916637 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
55916660 TT
1 TT
55916662 TTAACTTTTC
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 9 0.18
20 4 0.08
22 4 0.08
23 34 0.67
ACGTcount: A:0.21, C:0.27, G:0.07, T:0.46
Consensus pattern (23 bp):
TTCATATTCAAGTCTCTTCACTC
Found at i:55921153 original size:42 final size:42
Alignment explanation
Indices: 55921100--55921183 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
55921090 CTATCCATGC
55921100 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
* *
55921142 ATGTGTGTAACTTTTCATCTTCAAGTCTCTTCACTCTTCATA
1 ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
55921184 TTCAAGTCTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (42 bp):
ATGTGTATAACTTTTCATATTCAAGTCTCTTCACTCTTCATA
Found at i:55921187 original size:23 final size:23
Alignment explanation
Indices: 55921113--55921202 Score: 89
Period size: 23 Copynumber: 4.1 Consensus size: 23
55921103 TGTATAACTT
55921113 TTCATATTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
* * * * *
55921136 TTCATA---ATGTGT-GTAACTT
1 TTCATATTCAAGTCTCTTCACTC
*
55921155 TTCATCTTCAAGTCTCTTCACTC
1 TTCATATTCAAGTCTCTTCACTC
*
55921178 TTCATATTCAAGTCTCTTCATTC
1 TTCATATTCAAGTCTCTTCACTC
55921201 TT
1 TT
55921203 TTAACTTTTC
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
19 9 0.18
20 4 0.08
22 4 0.08
23 33 0.66
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.47
Consensus pattern (23 bp):
TTCATATTCAAGTCTCTTCACTC
Found at i:55922492 original size:42 final size:42
Alignment explanation
Indices: 55922428--55922665 Score: 300
Period size: 42 Copynumber: 5.6 Consensus size: 42
55922418 CAAACAAAAA
* * * **
55922428 CGCCGCTAAAGACCATATTCTTTAACGGCATTTTTGTT-TGTG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTT-TTCTAAG
* *
55922470 CGCCTCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTCTAAG
* * *
55922512 CGCCTCTAAAGAGCATGTTCTTTAGCGGCATTTTTTTTCTATG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCA-TTTTTTTCTAAG
* *
55922555 CGCCGCTAAAGAACATGGTT-TTTAGCGGCGTTTTTTTCTAGG
1 CGCCGCTAAAGAACAT-GTTCTTTAGCGGCATTTTTTTCTAAG
*
55922597 CGCCGCTAAAGAACATGGTCTTTAGCGGCATCTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCAT-TTTTTTCTAAG
*
55922640 CGCTGCTAAAGAACATGTTCTTTAGC
1 CGCCGCTAAAGAACATGTTCTTTAGC
55922666 AGCGCTTTTA
Statistics
Matches: 172, Mismatches: 19, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
41 4 0.02
42 97 0.56
43 68 0.40
44 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTCTAAG
Found at i:55922579 original size:85 final size:85
Alignment explanation
Indices: 55922428--55922674 Score: 336
Period size: 85 Copynumber: 2.9 Consensus size: 85
55922418 CAAACAAAAA
* * * * * *
55922428 CGCCGCTAAAGACCATATTCTTTAACGGCATTTTTGTT-TGTGCGCCTCTAAAGAACATGTTCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
55922492 TAGCGGCGTTTTTTTCTAAG
66 TAGCGGCGTTTTTTTCTAAG
* *
55922512 CGCCTCTAAAGAGCATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACATGGTT-T
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACAT-GTTCT
*
55922576 TTAGCGGCGTTTTTTTCTAGG
65 TTAGCGGCGTTTTTTTCTAAG
* * * *
55922597 CGCCGCTAAAGAACATGGTCTTTAGCGGCATCTTTTTTCTAAGCGCTGCTAAAGAACATGTTCTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
* *
55922662 TAGCAGCGCTTTT
66 TAGCGGCGTTTTT
55922675 ATACAAAAAC
Statistics
Matches: 144, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
84 36 0.25
85 105 0.73
86 3 0.02
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (85 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCATTTTTTTTCTATGCGCCGCTAAAGAACATGTTCTT
TAGCGGCGTTTTTTTCTAAG
Found at i:55923061 original size:21 final size:21
Alignment explanation
Indices: 55922993--55923063 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
55922983 TTTTGCTCTG
**
55922993 CTCTGCTTCTTTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
55923014 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
55923035 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
55923056 CTCTGCTT
1 CTCTGCTT
55923064 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:55928968 original size:21 final size:21
Alignment explanation
Indices: 55928944--55928984 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
55928934 GAACATTTGG
*
55928944 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGCCTAA-AACAGGCCT
55928965 TGTATAGCCTAAAACAGGCC
1 TGTATAGCCTAAAACAGGCC
55928985 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (21 bp):
TGTATAGCCTAAAACAGGCCT
Found at i:55936676 original size:34 final size:34
Alignment explanation
Indices: 55936637--55936708 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
55936627 GGAAACATGA
55936637 AAATATACACACTTTTTCATACCCTTTTTAACTC
1 AAATATACACACTTTTTCATACCCTTTTTAACTC
*
55936671 AAATATACACACTTTTTCATGCCCTTTTTAACTC
1 AAATATACACACTTTTTCATACCCTTTTTAACTC
55936705 AAAT
1 AAAT
55936709 TCATGCAGTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.01, T:0.40
Consensus pattern (34 bp):
AAATATACACACTTTTTCATACCCTTTTTAACTC
Found at i:55946510 original size:37 final size:37
Alignment explanation
Indices: 55946460--55946538 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
55946450 TTATTACGAA
* *
55946460 GTCTTACCCGGACATA-ATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACA-ACATCCCCACACGAAGTCATCGG
*
55946497 GTCTTACCCGGACAACATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAACATCCCCACACGAAGTCATCGG
55946534 GTCTT
1 GTCTT
55946539 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAACATCCCCACACGAAGTCATCGG
Found at i:55946744 original size:47 final size:47
Alignment explanation
Indices: 55946657--55947085 Score: 606
Period size: 47 Copynumber: 9.1 Consensus size: 47
55946647 CCTTTCGGGA
* * * * * * * * *
55946657 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
55946704 CTTGTCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55946751 CCTATCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55946798 CCTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
55946845 CCTATCACACATATATACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55946892 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55946939 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55946986 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55947033 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55947082 CTTA
1 CTTA
55947086 CTATCATTTC
Statistics
Matches: 353, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 312 0.88
49 41 0.12
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55950597 original size:40 final size:40
Alignment explanation
Indices: 55950552--55950826 Score: 399
Period size: 40 Copynumber: 6.9 Consensus size: 40
55950542 CGAATACACG
* * * * *
55950552 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * ** *
55950592 ACACCAGCACGAATGCTCTTCGGG-TTTAGTACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
55950631 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
55950671 TCACTAGCATGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
55950711 TCACTAGCATGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
55950751 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
55950791 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
55950827 CATCATTCAA
Statistics
Matches: 215, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 31 0.14
40 184 0.86
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:55951171 original size:29 final size:29
Alignment explanation
Indices: 55951132--55951210 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
55951122 CTTAATAATC
*
55951132 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
55951162 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
55951191 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
55951211 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:55953155 original size:37 final size:37
Alignment explanation
Indices: 55953105--55953183 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
55953095 TTATTACGAA
*
55953105 GTCTTACCCGGACATA-ATCTCCACACGAAGTAATCGG
1 GTCTTACCCGGACA-ACATCCCCACACGAAGTAATCGG
* *
55953142 GTCTTACCCGGACAACATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAACATCCCCACACGAAGTAATCGG
55953179 GTCTT
1 GTCTT
55953184 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAACATCCCCACACGAAGTAATCGG
Found at i:55953389 original size:47 final size:47
Alignment explanation
Indices: 55953302--55953777 Score: 682
Period size: 47 Copynumber: 10.1 Consensus size: 47
55953292 CCTTTCGGGA
* * * * * * * * *
55953302 CTTATCACATTTATGCACTTCCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953349 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953396 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
55953443 CCTATCACACATATACACTTTCACATTCATCGCGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
55953490 CCTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
55953537 CTTATCACGTATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953584 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953631 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953678 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
55953725 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
55953774 CTTA
1 CTTA
55953778 CTATCATTTC
Statistics
Matches: 400, Mismatches: 27, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
47 359 0.90
49 41 0.10
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:55959169 original size:17 final size:16
Alignment explanation
Indices: 55959143--55959175 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
55959133 ATAGGATTTG
55959143 ATGAGTTTACTTGCAA
1 ATGAGTTTACTTGCAA
55959159 ATGAGGTTTACTTGCAA
1 ATGA-GTTTACTTGCAA
55959176 GACAAGTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (16 bp):
ATGAGTTTACTTGCAA
Found at i:55964341 original size:18 final size:18
Alignment explanation
Indices: 55964318--55964353 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
55964308 CATTTTAGGT
*
55964318 CCACACGGCCTGAGACAC
1 CCACACGGCCTAAGACAC
55964336 CCACACGGCCTAAGACAC
1 CCACACGGCCTAAGACAC
55964354 AGCGTGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.44, G:0.19, T:0.06
Consensus pattern (18 bp):
CCACACGGCCTAAGACAC
Found at i:55964665 original size:7 final size:7
Alignment explanation
Indices: 55964655--55964720 Score: 53
Period size: 7 Copynumber: 8.6 Consensus size: 7
55964645 AAAGTTAAAA
55964655 TATATAT
1 TATATAT
55964662 TATAATAT
1 TAT-ATAT
55964670 TATAATAT
1 TAT-ATAT
*
55964678 TATATCT
1 TATATAT
55964685 TA-ATTAT
1 TATA-TAT
55964692 TAAGTATAT
1 T-A-TATAT
55964701 ATATTATAT
1 -TA-TATAT
55964710 TATATAT
1 TATATAT
55964717 TATA
1 TATA
55964721 ATAAGTAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
6 1 0.02
7 20 0.40
8 18 0.36
9 9 0.18
10 2 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (7 bp):
TATATAT
Found at i:55964671 original size:8 final size:8
Alignment explanation
Indices: 55964658--55964723 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
55964648 GTTAAAATAT
55964658 ATATTATA
1 ATATTATA
55964666 ATATTATA
1 ATATTATA
55964674 ATATTAT-
1 ATATTATA
*
55964681 ATCTTA-A
1 ATATTATA
*
55964688 TTATTA-A
1 ATATTATA
*
55964695 GTATATATATT
1 --ATAT-TATA
55964706 ATATTAT-
1 ATATTATA
55964713 ATATTATA
1 ATATTATA
55964721 ATA
1 ATA
55964724 AGTAAATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 17 0.36
8 21 0.45
9 7 0.15
10 2 0.04
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (8 bp):
ATATTATA
Found at i:55964690 original size:27 final size:26
Alignment explanation
Indices: 55964655--55964723 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 26
55964645 AAAGTTAAAA
55964655 TATATATTATAATATTATAATATTATAT
1 TATATATTATAATA-TAT-ATATTATAT
55964683 CT-TA-ATTATTAAGTATATATATTATAT
1 -TATATATTA-TAA-TATATATATTATAT
55964710 TATATATTATAATA
1 TATATATTATAATA
55964724 AGTAAATATA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 12 0.33
29 3 0.08
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (26 bp):
TATATATTATAATATATATATTATAT
Found at i:55964733 original size:30 final size:32
Alignment explanation
Indices: 55964665--55964733 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
55964655 TATATATTAT
* *
55964665 AATATTATAATATTATATCTTAATTATTAAGTA
1 AATA-TATAATATTATATATTAATTAATAAGTA
* *
55964698 TATATATTATATTATATATT-A-TAATAAGTA
1 AATATATAATATTATATATTAATTAATAAGTA
55964728 AATATA
1 AATATA
55964734 ATAAATAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 13 0.42
31 1 0.03
32 14 0.45
33 3 0.10
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (32 bp):
AATATATAATATTATATATTAATTAATAAGTA
Found at i:55965724 original size:37 final size:38
Alignment explanation
Indices: 55965624--55965726 Score: 93
Period size: 37 Copynumber: 2.7 Consensus size: 38
55965614 GACTTCGAGT
**
55965624 CGATGAGACACT-AGATGTCAATTTACTACTTCAGATTAATT
1 CGATGAGACACTGAG-TGTCAA-TT--TACTTCAGATTAAGC
* * * * *
55965665 CGATGAAACAATGGGTGCCAATTTACTTC-GATTTAGC
1 CGATGAGACACTGAGTGTCAATTTACTTCAGATTAAGC
55965702 CGATGAGACACTGAGTGTCAATTTA
1 CGATGAGACACTGAGTGTCAATTTA
55965727 TTACTTCGAA
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
37 26 0.52
38 6 0.12
40 2 0.04
41 15 0.30
42 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTGAGTGTCAATTTACTTCAGATTAAGC
Found at i:55968143 original size:26 final size:26
Alignment explanation
Indices: 55968108--55968187 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 26
55968098 GCCAACACAC
* *
55968108 CAATATCGCAGCAAAGCTGTCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* *
55968134 TAATGACGCAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* * * *
55968160 CAGTAACACAGCAAAGCTACCAATAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
55968186 CA
1 CA
55968188 GTATATGAGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.15
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTGCCAGTAA
Found at i:55968198 original size:26 final size:27
Alignment explanation
Indices: 55968142--55968218 Score: 79
Period size: 26 Copynumber: 3.0 Consensus size: 27
55968132 AATAATGACG
* *
55968142 CAGCAAAGCTGCCAGTAACAGTA-ACA
1 CAGCAAAGCTACCAATAACAGTATACA
*
55968168 CAGCAAAGCTACCAATAACAGTATA-T
1 CAGCAAAGCTACCAATAACAGTATACA
* * *
55968194 GAGCAAAGCCACTAAT-ACAGTATAC
1 CAGCAAAGCTACCAATAACAGTATAC
55968219 TTCCCCTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.19
26 34 0.79
27 1 0.02
ACGTcount: A:0.44, C:0.25, G:0.16, T:0.16
Consensus pattern (27 bp):
CAGCAAAGCTACCAATAACAGTATACA
Found at i:55968391 original size:27 final size:26
Alignment explanation
Indices: 55968361--55968707 Score: 397
Period size: 27 Copynumber: 12.9 Consensus size: 26
55968351 GAGTATAAAA
* *
55968361 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCT-TGAGGGTATTTCG
*
55968388 GTCATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTT-GAGGGTATTTCG
*
55968415 GTCATTTTACCCTTTGAGGGTACTTCG
1 GTCATTTTACCC-TTGAGGGTATTTCG
*
55968442 GTCATTTTACCATTCGAGGGTATTTCG
1 GTCATTTTACCCTT-GAGGGTATTTCG
* * *
55968469 ATCATTTTACCCTTTGGGGGTATTTTG
1 GTCATTTTACCC-TTGAGGGTATTTCG
*
55968496 GTCATTTTACCCTTCAGGGTATTTCG
1 GTCATTTTACCCTTGAGGGTATTTCG
55968522 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTT-GAGGGTATTTCG
* * *
55968549 ATCATTTTACCCTTTGGGGGTATTTCA
1 GTCATTTTACCC-TTGAGGGTATTTCG
* *
55968576 GTCATTTTACCCTTCGAAGGTGTTTCG
1 GTCATTTTACCCTT-GAGGGTATTTCG
* * *
55968603 ATCATTTTACCCTTCAGGAGTATTTCA
1 GTCATTTTACCCTTGAGG-GTATTTCG
* * *
55968630 GTCATTTTACCTTTTGGGGGTATTTCA
1 GTCATTTTACC-CTTGAGGGTATTTCG
*
55968657 GTCATTTTACCTTTTGAGGGTATTTCG
1 GTCATTTTACC-CTTGAGGGTATTTCG
55968684 GTCATTTTACCCTTCGAGGGTATT
1 GTCATTTTACCCTT-GAGGGTATT
55968708 ACGATTATTT
Statistics
Matches: 276, Mismatches: 34, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
26 34 0.12
27 232 0.84
28 10 0.04
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTTGAGGGTATTTCG
Found at i:55968424 original size:54 final size:54
Alignment explanation
Indices: 55968361--55968707 Score: 446
Period size: 54 Copynumber: 6.4 Consensus size: 54
55968351 GAGTATAAAA
* * * *
55968361 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
* *
55968415 GTCATTTTACCCTTTGAGGGTACTTCGGTCATTTTACCATTCGAGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
* * *
55968469 ATCATTTTACCCTTTGGGGGTATTTTGGTCATTTTACCCTTC-AGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
* * * * *
55968522 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCA
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
* * * * *
55968576 GTCATTTTACCCTTCGAAGGTGTTTCGATCATTTTACCCTTC-AGGAGTATTTCA
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGG-GTATTTCG
* * * * *
55968630 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCTTTTGAGGGTATTTCG
1 GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
*
55968684 GTCATTTTACCCTTCGAGGGTATT
1 GTCATTTTACCCTTTGAGGGTATT
55968708 ACGATTATTT
Statistics
Matches: 254, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 49 0.19
54 202 0.80
55 3 0.01
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.43
Consensus pattern (54 bp):
GTCATTTTACCCTTTGAGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCG
Found at i:55968474 original size:81 final size:81
Alignment explanation
Indices: 55968361--55968718 Score: 499
Period size: 81 Copynumber: 4.4 Consensus size: 81
55968351 GAGTATAAAA
* * * * *
55968361 GTCATTTTACCCTAT-GGGGGTATTTTGGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTAC
1 GTCATTTTACCCT-TCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGTCATTTTAC
*
55968425 CCTTTGAGGGTACTTCG
65 CCTTTGAGGGTATTTCG
* **
55968442 GTCATTTTACCATTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTTGGTCATTTTACC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
*
55968507 C-TTCAGGGTATTTCG
66 CTTTGAGGGTATTTCG
55968522 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
* * *
55968587 CTTCGAAGGTGTTTCG
66 CTTTGAGGGTATTTCG
* *
55968603 ATCATTTTACCCTTC-AGGAGTATTTC-AGTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTA
1 GTCATTTTACCCTTCGAGG-GTATTTCGA-TCATTTTACCCTTTGGGGGTATTTCAGTCATTTTA
*
55968666 CCTTTTGAGGGTATTTCG
64 CCCTTTGAGGGTATTTCG
* *
55968684 GTCATTTTACCCTTCGAGGGTATTACGATTATTTT
1 GTCATTTTACCCTTCGAGGGTATTTCGATCATTTT
55968719 GCCCACGAAT
Statistics
Matches: 247, Mismatches: 24, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
80 80 0.32
81 163 0.66
82 4 0.02
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (81 bp):
GTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGGTATTTCAGTCATTTTACC
CTTTGAGGGTATTTCG
Found at i:55975175 original size:94 final size:94
Alignment explanation
Indices: 55975014--55975205 Score: 341
Period size: 94 Copynumber: 2.1 Consensus size: 94
55975004 CAGTCTACAA
*
55975014 TATATAGAAACTTATAGATTCGGCGCTGGAGACTCGGTGTGCCACACATGTAACCTTCAAAAATA
1 TATATAGAAACTTATAGATTCAGCGCTGGAGACTCGGTGTGCCACACATGTAACCTTCAAAAATA
55975079 ATTCAAAATAACTTTCCAAAAAATTTCGG
66 ATTCAAAATAACTTTCCAAAAAATTTCGG
*
55975108 TATATAGAAACTTATAGATTCAGCGCTGGAGACTCGGTGTGCCACACTTGTAACCTTCAAAAATA
1 TATATAGAAACTTATAGATTCAGCGCTGGAGACTCGGTGTGCCACACATGTAACCTTCAAAAATA
* *
55975173 ATTCAAAATAGCTTTTCAAAAAATTTCGG
66 ATTCAAAATAACTTTCCAAAAAATTTCGG
55975202 -ATAT
1 TATAT
55975206 TTTCAAACCC
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 4 0.04
94 90 0.96
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (94 bp):
TATATAGAAACTTATAGATTCAGCGCTGGAGACTCGGTGTGCCACACATGTAACCTTCAAAAATA
ATTCAAAATAACTTTCCAAAAAATTTCGG
Found at i:55976082 original size:26 final size:26
Alignment explanation
Indices: 55976006--55976082 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
55975996 ACACCAATAT
* *
55976006 CACAGCAAAGCTGCCAGTAATAATGA
1 CACAGCAAAGCTGCCAGTAATAGTAA
* *
55976032 CACAACAAAGCTGCCAGTAACAGTAA
1 CACAGCAAAGCTGCCAGTAATAGTAA
* *
55976058 CGCAGCAAGGCTGCCAGTAATAGTA
1 CACAGCAAAGCTGCCAGTAATAGTA
55976083 TATGTGGGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.40, C:0.25, G:0.21, T:0.14
Consensus pattern (26 bp):
CACAGCAAAGCTGCCAGTAATAGTAA
Found at i:55976332 original size:54 final size:54
Alignment explanation
Indices: 55976257--55976685 Score: 438
Period size: 54 Copynumber: 7.9 Consensus size: 54
55976247 GAGTATAACA
* * * *
55976257 GTCATTTTACCCTAT-GGGGGTATTTTGGTTATTTTACCCTTTGGGGGTATTTCG
1 GTCATTTTACCCT-TCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCG
* * * * *
55976311 GTCATTTTACCCTTTGAGGGTACTTCGGTTATTTTACCATTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCG
* *
55976365 GTCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTAT-A
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATT-TCG
* ** **
55976419 GTCATTTTACCTTTCGAGGGTATTTCAGTCACATTACCCTTC-AGGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGA-GGGTATTTCG
* * ** * * *
55976473 ATCAATTT-CACCTTCGAGTATATTTCT-ATCATTTTACCCTTCGAGGTTATTTCA
1 GTCATTTTAC-CCTTCGAGGGTATTT-TGGTCATTTTACCCTTCGAGGGTATTTCG
* *
55976527 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTGTTTCA
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCG
* * * * * *
55976581 GTTATTTTACCCTTTGAGGTTATTTTAGTCATTTTAACCTTCG-GGATTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGG-GTATTTCG
* * * * *
55976635 ATCATTTTACCCTTCGAGGGTATTTCGATTATTTTACCCTTCAAGGGTATT
1 GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATT
55976686 ACGATTATTT
Statistics
Matches: 307, Mismatches: 57, Indels: 22
0.80 0.15 0.06
Matches are distributed among these distances:
53 7 0.02
54 295 0.96
55 5 0.02
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (54 bp):
GTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTCG
Found at i:55976374 original size:81 final size:81
Alignment explanation
Indices: 55976255--55976685 Score: 476
Period size: 81 Copynumber: 5.3 Consensus size: 81
55976245 GGGAGTATAA
* * ** * *
55976255 CAGTCATTTTACCCTAT-GGGGGTATTTTGGTTATTTTACCCTTTGGGGGTATTTCGGTCATTTT
1 CAGTTATTTTACCCT-TCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTT
* *
55976319 ACCCTTTGAGGGTACTT
65 ACCCTTCGAGGGTATTT
* * * *
55976336 CGGTTATTTTACCATTCGAGGGTATTTCGGTCATTTTACCCTTCGGGGGTATTTTGGTCATTTTA
1 CAGTTATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTA
55976401 CCCTTCGAGGGTATTAT
66 CCCTTCGAGGGTATT-T
* * ** * * *
55976418 -AGTCATTTTACCTTTCGAGGGTATTTCAGTCACATTACCCTTCAGGGGTATTTCGATCAATTT-
1 CAGTTATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTA
**
55976481 CACCTTCGAGTATATTT
66 C-CCTTCGAGGGTATTT
* * * *
55976498 CTA-TCATTTTACCCTTCGAGGTTATTTCAGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTT
1 C-AGTTATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTT
*
55976562 ACCCTTCGAGGGTGTTT
65 ACCCTTCGAGGGTATTT
* * * * ** *
55976579 CAGTTATTTTACCCTTTGAGGTTATTTTAGTCATTTTAACCTTCGGGATTATTTCGATCATTTTA
1 CAGTTATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTA
55976644 CCCTTCGAGGGTATTT
66 CCCTTCGAGGGTATTT
*
55976660 C-GATTATTTTACCCTTCAAGGGTATT
1 CAG-TTATTTTACCCTTCGAGGGTATT
55976686 ACGATTATTT
Statistics
Matches: 295, Mismatches: 47, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
80 5 0.02
81 287 0.97
82 3 0.01
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (81 bp):
CAGTTATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGGTATTTCGGTCATTTTA
CCCTTCGAGGGTATTT
Found at i:55976676 original size:27 final size:27
Alignment explanation
Indices: 55976258--55976696 Score: 392
Period size: 27 Copynumber: 16.3 Consensus size: 27
55976248 AGTATAACAG
* * *
55976258 TCATTTTACCCTAT-GGGGGTATTTTGG
1 TCATTTTACCCT-TCGAGGGTATTTCGA
* * * *
55976285 TTATTTTACCCTTTGGGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
55976312 TCATTTTACCCTTTGAGGGTACTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
55976339 TTATTTTACCATTCGAGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
55976366 TCATTTTACCCTTCGGGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGTATTTCGA
*
55976393 TCATTTTACCCTTCGAGGGTATTATAG-
1 TCATTTTACCCTTCGAGGGTATT-TCGA
*
55976420 TCATTTTACCTTTCGAGGGTATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
**
55976446 GTCACATTACCCTTC-AGGGGTATTTCGA
1 -TCATTTTACCCTTCGA-GGGTATTTCGA
* ** *
55976474 TCAATTT-CACCTTCGAGTATATTTCTA
1 TCATTTTAC-CCTTCGAGGGTATTTCGA
*
55976501 TCATTTTACCCTTCGAGGTTATTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
* *
55976527 GTCATTTTACCCTTCGAGGGTATTTTGG
1 -TCATTTTACCCTTCGAGGGTATTTCGA
*
55976555 TCATTTTACCCTTCGAGGGTGTTTC-A
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * * *
55976581 GTTATTTTACCCTTTGAGGTTATTT-TA
1 -TCATTTTACCCTTCGAGGGTATTTCGA
* *
55976608 GTCATTTTAACCTTCG-GGATTATTTCGA
1 -TCATTTTACCCTTCGAGG-GTATTTCGA
55976636 TCATTTTACCCTTCGAGGGTATTTCGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
* * *
55976663 TTATTTTACCCTTCAAGGGTATTACGA
1 TCATTTTACCCTTCGAGGGTATTTCGA
*
55976690 TTATTTT
1 TCATTTT
55976697 GCCCACGAAT
Statistics
Matches: 349, Mismatches: 47, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.02
27 334 0.96
28 8 0.02
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGA
Found at i:55982580 original size:39 final size:39
Alignment explanation
Indices: 55982537--55982614 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
55982527 TTAAACGTTG
*
55982537 AGGTTAGCATTTGGGTTGTTGAATATGCCGAACTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
*
55982576 AGGTTAGCATTTGGGTTGTTCAATATGCCGAATTTGGAT
1 AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
55982615 TTAGGGAGAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.37
Consensus pattern (39 bp):
AGGTTAGCATTTGGGTTGTTCAATATGCCGAACTTGGAT
Found at i:55984429 original size:47 final size:47
Alignment explanation
Indices: 55984246--55984875 Score: 936
Period size: 47 Copynumber: 13.2 Consensus size: 47
55984236 AATTCTAAAT
55984246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
55984295 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
55984342 TGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
55984390 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAAATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT--ATA
* *
55984439 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
55984486 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
55984533 TGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
55984581 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
55984630 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
55984677 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* *
55984726 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
55984773 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTTTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
55984820 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
55984867 TGTGATAAG
1 TGTGATAAG
55984876 TCCCGAAGGG
Statistics
Matches: 529, Mismatches: 44, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
47 268 0.51
48 88 0.17
49 173 0.33
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:55984490 original size:96 final size:96
Alignment explanation
Indices: 55984246--55984875 Score: 1002
Period size: 96 Copynumber: 6.6 Consensus size: 96
55984236 AATTCTAAAT
* *
55984246 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAGGCCTAAT
*
55984311 GGCCGATGTGATGAATGTGAAAGTG--TATATA
64 AGCCGATGTGATGAATGTGAAAGTGTATATATA
*
55984342 TGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 TGTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
*
55984407 GCCGATGTGATGAATGTGAAAGTGTATAAATA
65 GCCGATGTGATGAATGTGAAAGTGTATATATA
*
55984439 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
55984504 CCGATGTGATGAATGTGAAAGTG--TATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
*
55984533 TGTGAATAGGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
1 TGTG-ATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATA
55984598 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTGTATATATA
55984630 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
55984695 CCGATGTGATGAATGTGAAAGTGTATATATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * *
55984726 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
55984791 CCGATGTGATGAATGTGAAAGTGT-T-TATA
66 CCGATGTGATGAATGTGAAAGTGTATATATA
* * ** * * * * **
55984820 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
55984876 TCCCGAAGGG
Statistics
Matches: 503, Mismatches: 25, Indels: 14
0.93 0.05 0.03
Matches are distributed among these distances:
94 58 0.12
95 128 0.25
96 263 0.52
97 54 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:55984572 original size:191 final size:191
Alignment explanation
Indices: 55984241--55984875 Score: 1035
Period size: 191 Copynumber: 3.3 Consensus size: 191
55984231 ATGTGAATTC
55984241 TAAAT-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
55984305 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGA
55984370 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
129 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* *
55984433 TAAATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
55984498 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGATG
66 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGATG
55984563 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
131 AATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* * *
55984624 TATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
55984689 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTG-ATAAGGCTTAATGGCCGATGTGA
66 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAATAGGGCTTAATGGCCGATGTGA
* * *
55984753 TGAATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGT-
129 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * * *
55984815 T-TATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
55984876 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
190 50 0.12
191 236 0.56
192 86 0.20
193 50 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (191 bp):
TAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCTTAATGGCCGATGTGATG
AATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
Found at i:55985050 original size:37 final size:37
Alignment explanation
Indices: 55984996--55985067 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
55984986 GAGTTCTAAG
* * *
55984996 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
*
55985033 GACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 GACCCGATAACTACGTGTGGAGATTATGTCCGGGT
55985068 GAGATTTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.28
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCGGGTAA
Done.