Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 192 of 213
Found at i:57764131 original size:6 final size:6
Alignment explanation
Indices: 57764078--57764148 Score: 51
Period size: 6 Copynumber: 12.3 Consensus size: 6
57764068 CTAGGGCTTG
* * * *
57764078 AAGAAG AAGAAG AAGAAG AAGAAGA AAGAAA GA-AAA AAG-AA AAG-AA
1 AAGAAA AAGAAA AAGAAA AAGAA-A AAGAAA AAGAAA AAGAAA AAGAAA
* *
57764124 AAGAAA AAGGAA AA-AAA TAGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AA
57764149 AAATATTGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
5 17 0.31
6 32 0.59
7 5 0.09
ACGTcount: A:0.76, C:0.00, G:0.23, T:0.01
Consensus pattern (6 bp):
AAGAAA
Found at i:57764368 original size:17 final size:17
Alignment explanation
Indices: 57764311--57764370 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
57764301 ATAGCAGGCC
* *
57764311 ACAGCAGGCCCAATCCA
1 ACAGCAGGCCCACTGCA
* *
57764328 GCA-CAGGCCCAACAGCA
1 ACAGCAGGCCC-ACTGCA
**
57764345 AGTGCAGGCCCACTGCA
1 ACAGCAGGCCCACTGCA
57764362 ACAGCAGGC
1 ACAGCAGGC
57764371 TCCAAGCCCA
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
16 7 0.23
17 17 0.55
18 7 0.23
ACGTcount: A:0.32, C:0.38, G:0.25, T:0.05
Consensus pattern (17 bp):
ACAGCAGGCCCACTGCA
Found at i:57764497 original size:17 final size:20
Alignment explanation
Indices: 57764461--57764496 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
57764451 TAGCAGGCAA
57764461 AAAAAAAGAAGAGAAAAAAG
1 AAAAAAAGAAGAGAAAAAAG
57764481 AAAAAAA-AAG-GAAAAA
1 AAAAAAAGAAGAGAAAAA
57764497 GCTCGAGTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.38
19 3 0.19
20 7 0.44
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAGAGAAAAAAG
Found at i:57764667 original size:32 final size:34
Alignment explanation
Indices: 57764619--57764681 Score: 94
Period size: 32 Copynumber: 1.9 Consensus size: 34
57764609 ATATTCTTGT
*
57764619 TTTTTTTAAGC-ATTTTTTTAT-TTCGTATTAGG
1 TTTTTTAAAGCTATTTTTTTATATTCGTATTAGG
*
57764651 TTTTTTAAAGCTTTTTTTTTATATTCGTATT
1 TTTTTTAAAGCTATTTTTTTATATTCGTATT
57764682 TAATTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 10 0.37
33 9 0.33
34 8 0.30
ACGTcount: A:0.19, C:0.06, G:0.10, T:0.65
Consensus pattern (34 bp):
TTTTTTAAAGCTATTTTTTTATATTCGTATTAGG
Found at i:57765555 original size:24 final size:25
Alignment explanation
Indices: 57765510--57765556 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
57765500 TTTAAAGCAT
* *
57765510 TATAAAAACTATAATATCTTTGTAA
1 TATAAAAAATACAATATCTTTGTAA
*
57765535 TATAAAAAATACATTAT-TTTGT
1 TATAAAAAATACAATATCTTTGT
57765557 GACTTAGCCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 5 0.26
25 14 0.74
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (25 bp):
TATAAAAAATACAATATCTTTGTAA
Found at i:57765626 original size:12 final size:12
Alignment explanation
Indices: 57765611--57765644 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
57765601 ATTAAATATT
57765611 ATTTTAATTAAA
1 ATTTTAATTAAA
*
57765623 ATTTTAATTTAA
1 ATTTTAATTAAA
57765635 ATTTTAATTA
1 ATTTTAATTA
57765645 TTTTAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTAATTAAA
Found at i:57773950 original size:6 final size:6
Alignment explanation
Indices: 57773936--57773969 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
57773926 ATCTTGTCTC
* *
57773936 TCTTTT TCTTGT TCTTGT TCTTGT TCTTTT TCTT
1 TCTTGT TCTTGT TCTTGT TCTTGT TCTTGT TCTT
57773970 CTTCGCATCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.18, G:0.09, T:0.74
Consensus pattern (6 bp):
TCTTGT
Found at i:57773956 original size:12 final size:12
Alignment explanation
Indices: 57773936--57773969 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
57773926 ATCTTGTCTC
57773936 TCTTTTTCTTGT
1 TCTTTTTCTTGT
*
57773948 TCTTGTTCTTGT
1 TCTTTTTCTTGT
57773960 TCTTTTTCTT
1 TCTTTTTCTT
57773970 CTTCGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.18, G:0.09, T:0.74
Consensus pattern (12 bp):
TCTTTTTCTTGT
Found at i:57777439 original size:15 final size:15
Alignment explanation
Indices: 57777419--57777475 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
57777409 ATTACGAAAA
57777419 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
57777434 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
57777453 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
57777468 A-TTATTAT
1 ATTTATTAT
57777476 AGAATATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
14 7 0.20
15 10 0.29
16 1 0.03
17 7 0.20
18 1 0.03
19 9 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:57777700 original size:19 final size:19
Alignment explanation
Indices: 57777672--57777725 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
57777662 AATCTTCGAG
*
57777672 GATATGCAATCTTAGATAT
1 GATATTCAATCTTAGATAT
*
57777691 TATATTCAATCTTAGATAT
1 GATATTCAATCTTAGATAT
57777710 GATATGT-AATCTTAGA
1 GATAT-TCAATCTTAGA
57777726 AGATATGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 30 0.97
20 1 0.03
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (19 bp):
GATATTCAATCTTAGATAT
Found at i:57777732 original size:22 final size:22
Alignment explanation
Indices: 57777704--57777751 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
57777694 ATTCAATCTT
57777704 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTA-A
*
57777726 AGATATGATTTTGTAATCTTAA
1 AGATATGATTATGTAATCTTAA
57777748 AGAT
1 AGAT
57777752 TTAATTTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.40
Consensus pattern (22 bp):
AGATATGATTATGTAATCTTAA
Found at i:57777744 original size:23 final size:21
Alignment explanation
Indices: 57777672--57777751 Score: 71
Period size: 19 Copynumber: 3.9 Consensus size: 21
57777662 AATCTTCGAG
*
57777672 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAAAGATAT
*
57777691 TATAT-TCAATCTT--AGATAT
1 GATATGT-AATCTTAAAGATAT
57777710 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTTA-AAGATAT
*
57777732 GATTTTGTAATCTTAAAGAT
1 GA-TATGTAATCTTAAAGAT
57777752 TTAATTTGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
19 26 0.51
20 1 0.02
22 13 0.25
23 11 0.22
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (21 bp):
GATATGTAATCTTAAAGATAT
Found at i:57777761 original size:21 final size:23
Alignment explanation
Indices: 57777704--57777761 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
57777694 ATTCAATCTT
*
57777704 AGATATG-ATATGTAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
57777726 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
57777748 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
57777762 GATACCCTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 8 0.26
22 12 0.39
23 11 0.35
ACGTcount: A:0.38, C:0.03, G:0.16, T:0.43
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:57778187 original size:3 final size:3
Alignment explanation
Indices: 57778179--57778218 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
57778169 ATTAATTTTG
*
57778179 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
57778219 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:57778187 original size:15 final size:15
Alignment explanation
Indices: 57778163--57778217 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
57778153 GTTTTTAGTC
57778163 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
57778177 TGTTATTATTATTTT
1 TATTATTATTAATTT
57778192 TATTATTA-T-ATTAT
1 TATTATTATTAATT-T
57778206 ATATTATTATTA
1 -TATTATTATTA
57778218 TACCTACATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
13 2 0.06
14 5 0.16
15 24 0.75
16 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:57778194 original size:12 final size:12
Alignment explanation
Indices: 57778165--57778216 Score: 52
Period size: 12 Copynumber: 4.1 Consensus size: 12
57778155 TTTTAGTCTA
57778165 TTTTATTAATT-T
1 TTTTATT-ATTAT
*
57778177 TGTTATTATTAT
1 TTTTATTATTAT
57778189 TTTTATTATTAT
1 TTTTATTATTAT
57778201 ATTATATATTATTAT
1 -TT-T-TATTATTAT
57778216 T
1 T
57778217 ATACCTACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.09
12 18 0.53
13 2 0.06
14 2 0.06
15 9 0.26
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:57779065 original size:35 final size:35
Alignment explanation
Indices: 57779019--57779088 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
57779009 GGGAAGTTAA
57779019 ATATGTTGTATCCTAACGTATTGGATGTGACGTAT
1 ATATGTTGTATCCTAACGTATTGGATGTGACGTAT
57779054 ATATGTTGTATCCTAACGTATTGGATGTGACGTAT
1 ATATGTTGTATCCTAACGTATTGGATGTGACGTAT
57779089 TGATTTCTCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (35 bp):
ATATGTTGTATCCTAACGTATTGGATGTGACGTAT
Found at i:57784860 original size:44 final size:44
Alignment explanation
Indices: 57784810--57784945 Score: 105
Period size: 44 Copynumber: 3.1 Consensus size: 44
57784800 AATAGCAGAT
57784810 CTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGC
* *** * * * * * * * *
57784854 CTTGCCTCCCTG-GGTTGCAGTGGAGCAG-GCTAAAAATAGCAGAC
1 CTTGCCTTCCTGCACCTACAGCGAAGCAGATC-GAAGACACCAG-C
* * *
57784898 CTTTCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGC
57784942 CTTG
1 CTTG
57784946 TCTCCTTGGG
Statistics
Matches: 60, Mismatches: 28, Indels: 8
0.62 0.29 0.08
Matches are distributed among these distances:
42 1 0.02
43 17 0.28
44 26 0.43
45 15 0.25
46 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.19
Consensus pattern (44 bp):
CTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGC
Found at i:57784862 original size:88 final size:88
Alignment explanation
Indices: 57784713--57785205 Score: 655
Period size: 88 Copynumber: 5.6 Consensus size: 88
57784703 ATCAGTGAAG
* ** * * * *
57784713 ATAGCAGATCTTGCCTTCCTGTACCGGTAGCGGAGCAGATCAAAGACACCAGTCTTCCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
57784778 GGTTGCAGCAGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
*
57784801 ATAGCAGATCTTGCCTTCCTGCACCTACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
57784866 GGTTGCAGTGGAGCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * *
57784889 ATAGCAGACCTTTCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGTCTCCTTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
57784954 GGTTGCAGTGGATCAGGCTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* **
57784977 ATAGCAAATCTTGCCTTCCTGCACCGACAATGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* * * * *
57785042 GATTACACCGGAGTAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * * * * *
57785065 ATAACAGATCTTACCTTCCTGCACCGACAGTGAAGCAGATCGAAGAAACTAGCCTTGCCTCACT-
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
57785129 AGTTGCAGCGGAGCAGGTTAAAA
66 GGTTGCAGCGGAGCAGGCTAAAA
* * *
57785152 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
57785206 CTATCTCCCT
Statistics
Matches: 353, Mismatches: 52, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
87 64 0.18
88 289 0.82
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
GGTTGCAGCGGAGCAGGCTAAAA
Found at i:57785269 original size:44 final size:44
Alignment explanation
Indices: 57785206--57785580 Score: 444
Period size: 44 Copynumber: 8.7 Consensus size: 44
57785196 GACCCCAGCC
57785206 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
*
57785250 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAA-T
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
* * *
57785293 CATATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGAGAATT
1 C-TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
* * *
57785338 CTATCTCCATGGGCAGCAGTGGAATAGATT-AA-A----GAATT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
* * * *
57785376 CTATCTCCTTGGACAGTAGTGGAATAGGTTAAAGATTGTGAATC
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
* *
57785420 CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
* * * * * * *
57785464 ATATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGTC
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGA-ATT
* * *
57785508 CTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGATCGTGAACT
1 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
*
57785552 CTATCTCCCTGAG-CAGCAGTGGAGTAGGT
1 CTATCTCCCTG-GTCAGCAGTGGAATAGGT
57785581 GGAAAATAGC
Statistics
Matches: 281, Mismatches: 39, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
38 31 0.11
39 2 0.01
40 1 0.00
42 1 0.00
43 5 0.02
44 237 0.84
45 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATT
Found at i:57785409 original size:126 final size:128
Alignment explanation
Indices: 57785207--57785580 Score: 495
Period size: 126 Copynumber: 2.9 Consensus size: 128
57785197 ACCCCAGCCC
* * * *
57785207 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATTCTATCTCCCTGGACAGCAGTGG
1 TATCTCCATGGGCAGCAGTGGAATAGATTGAAGA---TGAATTCTATCTCCCTGGACAGCAGTGG
*
57785272 AATAGGTTAAAGATTGTGAATCATATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTGAGAAT
63 AATAGGTTAAAGATTGTGAATC-TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
*
57785337 TC
127 TA
* *
57785339 TATCTCCATGGGCAGCAGTGGAATAGATT-AA-A-GAATTCTATCTCCTTGGACAGTAGTGGAAT
1 TATCTCCATGGGCAGCAGTGGAATAGATTGAAGATGAATTCTATCTCCCTGGACAGCAGTGGAAT
57785401 AGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTA
66 AGGTTAAAGATTGTGAAT-CTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTA
* * * * *
57785465 TATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTGTAGGTCCTATCTCCCTGGTCAACAGTGG
1 TATCTCCATGGGCAGCAGTGGAATAGATTGAAGA-TG-A-ATTCTATCTCCCTGGACAGCAGTGG
* *
57785530 AATAGGTTAAAGATCGTGAACTCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
63 AATAGGTTAAAGATTGTGAA-TCTATCTCCCTG-GTCAGCAGTGGAATAGGT
57785581 GGAAAATAGC
Statistics
Matches: 217, Mismatches: 16, Indels: 18
0.86 0.06 0.07
Matches are distributed among these distances:
126 116 0.53
127 3 0.01
128 1 0.00
130 2 0.01
131 3 0.01
132 90 0.41
133 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (128 bp):
TATCTCCATGGGCAGCAGTGGAATAGATTGAAGATGAATTCTATCTCCCTGGACAGCAGTGGAAT
AGGTTAAAGATTGTGAATCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTA
Found at i:57785488 original size:170 final size:170
Alignment explanation
Indices: 57785206--57785542 Score: 496
Period size: 170 Copynumber: 2.0 Consensus size: 170
57785196 GACCCCAGCC
* *
57785206 CTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATTCTATCTCCCTGGACAGCAGTG
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
* ** *
57785271 GAATAGGTTAAAGATTGTGAATCATATCTCCCTGGTTAGCAGTGGAATAGGTTGAAGATTG-AGA
66 GAATAGGTTAAAGATTGAGAATCATATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG-
* *
57785335 ATTCTATCTCCATGGGCAGCAGTGGAATAGATTAAAGAATT
130 ATCCTATCTCCATGGGCAACAGTGGAATAGATTAAAGAATT
* * *
57785376 CTATCTCCTTGGACAGTAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTG
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
* * * *
57785441 GAATAGGTTGAAGATTGAGAATTATATCTCCTTGGGCAGCAGTGGAATAGATTGAAGATTGTAGG
66 GAATAGGTTAAAGATTGAGAATCATATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAGA
* * *
57785506 TCCTATCTCCCTGGTCAACAGTGGAATAGGTTAAAGA
131 TCCTATCTCCATGGGCAACAGTGGAATAGATTAAAGA
57785543 TCGTGAACTC
Statistics
Matches: 148, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
170 146 0.99
171 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (170 bp):
CTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
GAATAGGTTAAAGATTGAGAATCATATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAGA
TCCTATCTCCATGGGCAACAGTGGAATAGATTAAAGAATT
Found at i:57785980 original size:44 final size:44
Alignment explanation
Indices: 57785887--57786002 Score: 110
Period size: 44 Copynumber: 2.7 Consensus size: 44
57785877 ATGGTAAATT
* * * *
57785887 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACCATAATC
* * * *
57785931 CTATCTCCCTGAAGTTGCAGTGAAGCGGATTAAA-ACCTTGGATC
1 TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACCAT-AATC
* * *
57785975 TTATCTCTCTAAAGTTGCAGAG-AGCAGA
1 TTATCTCCCTGAAGTTGCAGTGAAGCAGA
57786003 ACTCATCTAG
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
43 7 0.12
44 51 0.88
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAGACCATAATC
Found at i:57786446 original size:19 final size:19
Alignment explanation
Indices: 57786422--57786517 Score: 138
Period size: 21 Copynumber: 4.8 Consensus size: 19
57786412 AATATTCGAG
57786422 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
57786441 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
57786460 GATATATACAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
57786481 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
57786502 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
57786518 AGATATGATT
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 34 0.47
21 38 0.53
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:57786471 original size:21 final size:21
Alignment explanation
Indices: 57786423--57786506 Score: 145
Period size: 21 Copynumber: 4.1 Consensus size: 21
57786413 ATATTCGAGG
57786423 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
57786442 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
57786463 ATATACAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
57786484 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
57786505 AT
1 AT
57786507 GTAATCTTAG
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 19 0.31
21 42 0.69
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:57786536 original size:23 final size:22
Alignment explanation
Indices: 57786435--57786540 Score: 75
Period size: 19 Copynumber: 5.0 Consensus size: 22
57786425 ATGCAATCTT
*
57786435 AGATATGATATGCAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
57786457 TATGATAT-ATA--CAATCTTAG-
1 -A-GATATGATATGTAATCTTAGA
* *
57786477 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
57786496 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
57786518 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
57786541 GATTTAATTT
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
18 4 0.06
19 20 0.29
21 16 0.23
22 8 0.11
23 17 0.24
24 5 0.07
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:57786536 original size:42 final size:40
Alignment explanation
Indices: 57786429--57786540 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 40
57786419 GAGGATATGC
57786429 AATCTTAGATATGA-TATGCAATCTTAGATATGATATATA
1 AATCTTAGATATGATTATGCAATCTTAGATATGATATATA
*
57786468 CAATCTTAGATATGATATATGCAATCTTAGATATGATATGT-
1 -AATCTTAGATATGAT-TATGCAATCTTAGATATGATATATA
* *
57786509 AATCTTAGAAGATATGATTTTGTAATCTTAGA
1 AATCTT---AGATATGATTATGCAATCTTAGA
57786541 GATTTAATTT
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
40 20 0.31
42 35 0.55
43 9 0.14
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.39
Consensus pattern (40 bp):
AATCTTAGATATGATTATGCAATCTTAGATATGATATATA
Found at i:57786550 original size:22 final size:23
Alignment explanation
Indices: 57786506--57786550 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
57786496 AGATATGATA
*
57786506 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
57786529 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
57786551 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:57786733 original size:19 final size:21
Alignment explanation
Indices: 57786709--57786747 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
57786699 GGCTTACTGT
*
57786709 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
57786728 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
57786748 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:57786976 original size:3 final size:3
Alignment explanation
Indices: 57786968--57787010 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
57786958 ATTAATTTTG
*
57786968 TTA TTA TTA TTT TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
57787011 ACCTACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 31 0.86
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:57786976 original size:15 final size:15
Alignment explanation
Indices: 57786952--57787009 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
57786942 GTTTTTAGTC
57786952 TATT-TTATTAATTT
1 TATTATTATTAATTT
* *
57786966 TGTTATTATTATTTT
1 TATTATTATTAATTT
*
57786981 TATTATTATATTATATAT
1 TATTA-T-TATTA-ATTT
57786999 TATTATTATTA
1 TATTATTATTA
57787010 TACCTACATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 3 0.09
15 13 0.37
16 6 0.17
17 6 0.17
18 7 0.20
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTATTATTAATTT
Found at i:57791217 original size:23 final size:24
Alignment explanation
Indices: 57791176--57791220 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
57791166 ATTTTTTAGT
*
57791176 TTTTTTTAATTTTAGGGAAAATCG
1 TTTTTTTAACTTTAGGGAAAATCG
57791200 TTTTTTTAACTTTA-GGAAAAT
1 TTTTTTTAACTTTAGGGAAAAT
57791221 TTAGGTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.31, C:0.04, G:0.13, T:0.51
Consensus pattern (24 bp):
TTTTTTTAACTTTAGGGAAAATCG
Found at i:57793643 original size:13 final size:12
Alignment explanation
Indices: 57793609--57793640 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
57793599 TTTAATAAAC
57793609 TTTAAAAATATT
1 TTTAAAAATATT
*
57793621 TTTATAAATATT
1 TTTAAAAATATT
57793633 TTTAAAAA
1 TTTAAAAA
57793641 ATAATTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAAAAATATT
Found at i:57795531 original size:19 final size:20
Alignment explanation
Indices: 57795493--57795533 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
57795483 TTTTGAGTTC
57795493 ACTAGTCGAATTAAAAAAAA
1 ACTAGTCGAATTAAAAAAAA
* *
57795513 ACTAGT-GACTTAAATAAAA
1 ACTAGTCGAATTAAAAAAAA
57795532 AC
1 AC
57795534 ATTCAAATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.22
Consensus pattern (20 bp):
ACTAGTCGAATTAAAAAAAA
Found at i:57796466 original size:21 final size:21
Alignment explanation
Indices: 57796440--57796519 Score: 90
Period size: 21 Copynumber: 3.8 Consensus size: 21
57796430 AAATGTAGAA
* *
57796440 GCAGTGAAGCAAGGTGAAAAG
1 GCAGTGAACCAAAGTGAAAAG
57796461 GCAGTGAACCAAAGTGAAAAG
1 GCAGTGAACCAAAGTGAAAAG
* *
57796482 GCTGTGAACCAAAATG-AAAG
1 GCAGTGAACCAAAGTGAAAAG
**
57796502 AATAGTGAACCAAAGTGA
1 -GCAGTGAACCAAAGTGA
57796520 GGAAGCGTTT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
20 4 0.08
21 45 0.92
ACGTcount: A:0.46, C:0.12, G:0.29, T:0.12
Consensus pattern (21 bp):
GCAGTGAACCAAAGTGAAAAG
Found at i:57799495 original size:24 final size:24
Alignment explanation
Indices: 57799452--57799497 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
57799442 CATAGCCCCA
* *
57799452 AAACACAAAAAGCAGGCATCTAAG
1 AAACACAAAAAGAACGCATCTAAG
*
57799476 AAACACAAAAAGAACTCATCTA
1 AAACACAAAAAGAACGCATCTA
57799498 CAGGTCCTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.22, G:0.11, T:0.11
Consensus pattern (24 bp):
AAACACAAAAAGAACGCATCTAAG
Found at i:57811515 original size:44 final size:44
Alignment explanation
Indices: 57811465--57811554 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 44
57811455 TAATTGTAAT
* * *
57811465 TTAAATTCTAATTATTTTTAAGA-GTGTAATTATCACAATTTCTA
1 TTAAATTATAATTATTTTTAA-ATGTATAATTATCACAACTTCTA
57811509 TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
1 TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
57811553 TT
1 TT
57811555 TTATTTTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (44 bp):
TTAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTA
Found at i:57817242 original size:17 final size:19
Alignment explanation
Indices: 57817215--57817253 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
57817205 CGTTAGAAAT
*
57817215 TTTTATTTATATAAT-TAA
1 TTTTATTTATACAATATAA
57817233 TTTT-TTTATACAATATAA
1 TTTTATTTATACAATATAA
57817251 TTT
1 TTT
57817254 CAAACCCACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTATTTATACAATATAA
Found at i:57822027 original size:6 final size:6
Alignment explanation
Indices: 57821983--57822038 Score: 51
Period size: 7 Copynumber: 8.8 Consensus size: 6
57821973 AATCAAAAAG
* *
57821983 TTAAAT TTAGAAT TTAAGAT TTAGAGT TTAGAT TT-AAT TTAAAT TTAAAGT
1 TTAAAT TTA-AAT TTAA-AT TTA-AAT TTAAAT TTAAAT TTAAAT TTAAA-T
57822034 TTAAA
1 TTAAA
57822039 ATTTCGAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
5 4 0.10
6 15 0.37
7 21 0.51
8 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (6 bp):
TTAAAT
Found at i:57822037 original size:13 final size:13
Alignment explanation
Indices: 57821979--57822038 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
57821969 CGTGAATCAA
57821979 AAAG-TTAAATTT
1 AAAGTTTAAATTT
57821991 AGAA-TTTAAGATTT
1 A-AAGTTTAA-ATTT
* *
57822005 AGAGTTTAGATTT
1 AAAGTTTAAATTT
57822018 -AA-TTTAAATTT
1 AAAGTTTAAATTT
57822029 AAAGTTTAAA
1 AAAGTTTAAA
57822039 ATTTCGAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
11 8 0.21
12 4 0.11
13 17 0.45
14 9 0.24
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (13 bp):
AAAGTTTAAATTT
Found at i:57822792 original size:124 final size:124
Alignment explanation
Indices: 57822498--57822847 Score: 569
Period size: 123 Copynumber: 2.8 Consensus size: 124
57822488 TGATTTCGAG
* * *
57822498 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTA
** *
57822563 AAATCATGCCCTCGTGGACGCGCTTTTGCTA-AGTAGGTCATGGAAGAAATAATTTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGAAAGAAATAATTTTTT
* * * *
57822621 TTTACGTTTCTGAGTAAATAGTATAAAATCGCTTCTAGCAGGTTGCTATTTAAGAAGAATTTGTA
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTA
57822686 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTCA-GTCATGAAAGAAATAATTTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT-AGGTCATGAAAGAAATAATTTTTT
*
57822745 TTGACGTTTTTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGT-
57822810 AAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
65 AAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
57822848 CATGTTTGGG
Statistics
Matches: 208, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
123 87 0.42
124 84 0.40
125 37 0.18
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33
Consensus pattern (124 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTA
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGAAAGAAATAATTTTTT
Found at i:57826038 original size:17 final size:17
Alignment explanation
Indices: 57825971--57826039 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
57825961 TATGTTAATG
*
57825971 TAAAATTATTAATT-GA
1 TAAAATTATTAATTATA
* *
57825987 TAAATTGTATTAATGATTA
1 TAAAAT-TATTAATTA-TA
*
57826006 GTAAAATTATCAAATTATA
1 -TAAAATTAT-TAATTATA
57826025 TAAAATTATTAATTA
1 TAAAATTATTAATTA
57826040 ATAGTACCAG
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
16 5 0.12
17 12 0.29
18 9 0.22
19 6 0.15
20 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.43
Consensus pattern (17 bp):
TAAAATTATTAATTATA
Found at i:57826045 original size:37 final size:36
Alignment explanation
Indices: 57825965--57826045 Score: 85
Period size: 37 Copynumber: 2.2 Consensus size: 36
57825955 TAACATTATG
* *
57825965 TTAAT-GTAAAATTATTAATTGATAAATTGTATTAA
1 TTAATAGTAAAATTATAAATTGATAAAATGTATTAA
* * *
57826000 TGATTAGTAAAATTATCAAATTATATAAAAT-TATTAA
1 TTAATAGTAAAATTAT-AAATT-GATAAAATGTATTAA
57826037 TTAATAGTA
1 TTAATAGTA
57826046 CCAGGCAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
35 3 0.08
36 10 0.28
37 17 0.47
38 6 0.17
ACGTcount: A:0.48, C:0.01, G:0.07, T:0.43
Consensus pattern (36 bp):
TTAATAGTAAAATTATAAATTGATAAAATGTATTAA
Found at i:57826063 original size:116 final size:116
Alignment explanation
Indices: 57825857--57826100 Score: 382
Period size: 116 Copynumber: 2.1 Consensus size: 116
57825847 TAAGTTTGTG
* *
57825857 AAATTATTAATTAATAAATTTTATTAATGGTTAGTAAAAATTATCAAATTATATAAAATTATTAA
1 AAATTATTAATTAATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
** * * *
57825922 TTGTTAGTACAAGTCAAAACATTTTTCCAAATCTAACATTATGTTAATGTA
66 TTAATAGTACAAGGCAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
*
57825973 AAATTATTAATTGATAAATTGTATTAATGATTAGT-AAAATTATCAAATTATATAAAATTATTAA
1 AAATTATTAATTAATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
* *
57826037 TTAATAGTACCAGGCAAAAATATTTTTCCAAATCTAACATTATGTGAAAGTA
66 TTAATAGTACAAGGC-AAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
57826089 AAATTATTAATT
1 AAATTATTAATT
57826101 TAGTTTAGGG
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
115 40 0.34
116 77 0.66
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (116 bp):
AAATTATTAATTAATAAATTGTATTAATGATTAGTAAAAATTATCAAATTATATAAAATTATTAA
TTAATAGTACAAGGCAAAACATTTTTCCAAATCTAACATTATGTGAAAGTA
Found at i:57826126 original size:23 final size:23
Alignment explanation
Indices: 57826094--57828786 Score: 1394
Period size: 23 Copynumber: 120.0 Consensus size: 23
57826084 AAGTAAAATT
* *
57826094 ATTAATTTAGTTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57826117 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826140 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
**
57826163 AGTT-AA-GGGTGTTAGGGTTTTTA
1 A-TTAAATTAG-GTTAGGGTTTTTA
* * *
57826186 AGT---TTA-G---GGTTTTTAA
1 ATTAAATTAGGTTAGGGTTTTTA
* * * *
57826202 TTTAATTAAG-TTCGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57826224 AGTT-AATTAGGTTAAGTTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
***
57826247 AGTT-AAGGGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* **
57826270 AGT---TTAGGGTTTAATGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
* *
57826292 ATTTAATTACGTTAGGG-TTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57826314 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*** *
57826337 AGTTAAGGGA-GTTA----ATTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
** *
57826356 ATTAGGTTA-G-A---GTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57826374 ATTTAATTAGGTTAAGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826397 AGTT-AATTAGGTTAGGGTATTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
***
57826420 AGTT-AAGGGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* *
57826443 AGT---TTAGGGTTTAAGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57826465 ATTTAATT-GGCTTAGGGTTTTTA
1 ATTAAATTAGG-TTAGGGTTTTTA
57826488 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57826511 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57826533 ATTAAATTAGGTTAGGATTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826556 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57826579 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*** *
57826602 AGTT-AAGGGGGTTAGGGTCTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* *
57826625 AGT---TTAGGGTTTAGAGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57826647 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
**
57826670 AGTT-AATGGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* * *
57826693 AGTT-GA--GGGTTTAAGGTTTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
*
57826715 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826738 AGTT-AACTAGGTTAGAGG-TTTTA
1 A-TTAAATTAGGTTAG-GGTTTTTA
*
57826761 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
57826783 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57826806 ATTCAATTATGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826829 GGTT-AATTAGGTTAGGGTTTTTA
1 -ATTAAATTAGGTTAGGGTTTTTA
**
57826852 AGTT-AA-GGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57826874 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
* *
57826896 ATTTAAGTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826919 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57826941 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57826964 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57826986 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827009 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57827032 AGT---TTAGGGTTTAAGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57827054 ATTAAATAAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827077 AGT---TTAGGATTTAGGGTTTTTA
1 ATTAAATTAGG--TTAGGGTTTTTA
*
57827099 ATTAAATTAGGTTAGAGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57827122 ATTTAATTAGGTTAGGATTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57827145 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
***
57827168 ACTT-AAGGGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* * *
57827191 AGT---TTAGGGTTTAAGATTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
* * *
57827213 AGTGAATTAGGTTAGTGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57827236 AGTT---TAAGGTTTAAGGTTTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
*
57827258 ATTAAATTATGTTAGGG-TTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827280 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
* *
57827302 GTTAAATTAGGTTATGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* * *
57827325 ATTTAATTAGTTTATGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57827348 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* *
57827371 AGT---TTAGGGTTTAGGGTTTTAA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57827393 ATTAAATTAGGTTAGAGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827416 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57827438 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57827461 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
**
57827484 AGTTTAGGGTTTAGGGTTTAGGGTTTTTA
1 A--TTA--AATTA-GG-TTAGGGTTTTTA
*
57827513 ATTAAATCAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827536 ATTTAATTAGGTTAGGG-TTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827558 AGTT-AATTAGGTTAGTGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
***
57827581 AGTT-AAGGGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57827604 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
* *
57827626 ATTTAATTGGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* * *
57827649 ATTTAATTAGGTTAAGATTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827672 AGTT-AATTAGGTTAAGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57827695 AGTTAAGA--GGGTTAGGGTTTTTA
1 A-TTAA-ATTAGGTTAGGGTTTTTA
* *
57827718 AGT---TTAGGGTTTAAGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57827740 AGT---TTAGGGTTTAAGGG-TTTTA
1 ATTAAATTA-GG-TT-AGGGTTTTTA
*
57827762 ATCAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* * *
57827785 AGT---TTAGGGTTTAAGGTTTTGA
1 ATTAAATTA-GG-TTAGGGTTTTTA
57827807 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827830 AGT---TTAGG---GGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57827847 ATTAAATTAGGTTAGTGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57827870 ATTTAATTAGCTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57827893 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57827916 AGTT-AATTAGGTTAAGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
**
57827939 AGTT-AA-GGGGTTTAGGG-TTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
* *
57827961 AGT---TTAGGGTTTAGGGTTTTAA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57827983 ATTAATTTGGTTAGGGTTTAGGGTTTTTA
1 ATTAA----ATTA-GG-TTAGGGTTTTTA
*
57828012 ATTAAATTAGGTTAGAGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57828035 ATTTAATTTGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828058 AGTT-AATGAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* * *
57828081 AGT---TTA-G---GGTTTTTAA
1 ATTAAATTAGGTTAGGGTTTTTA
* * * ** * **
57828097 GTGAATTAGGTTAGG-GTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57828119 AGTT-TA-T-GGTTTAAGGTTTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
* *
57828141 ATTAAATTATGTTAGAGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57828164 ATT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
*
57828186 ATTAAATTAGGTTAGGATTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* *
57828209 ATTTAATTAGGTTATGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828232 AGTT-AATTAGGTTAGAGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* *
57828255 AGT---TTAGGTTTTGGGTTTTTA
1 ATTAAATTAGG-TTAGGGTTTTTA
*
57828276 ATTAAATTAAGTTAGGG-TTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828298 AGT---TTAGGGTTTAGGG-TTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
57828319 ATTAAATTAGGTTAGGGTTTTT-
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828341 ATTTAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828364 AGTT-AATTAGGTTATGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57828387 AGTTAAGA--GGGTTAGGGTTTTTA
1 A-TTAA-ATTAGGTTAGGGTTTTTA
*
57828410 AGTT---TAAGGTTTAGGGTTTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
57828432 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
* * *
57828455 AGT---TTA-G---GGTTTTTAA
1 ATTAAATTAGGTTAGGGTTTTTA
* * ** * **
57828471 GTTAATTAGGTTAGG-GTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
** *
57828493 AGTTAAA-GGGGTTAGAGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
57828516 ACTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
**
57828539 AGTT-AA-GGGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
* *
57828561 AGT---TTAGGGTTTAGGGTTTGTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
57828583 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
*
57828606 AGTT---TAAGGTTTAGGGTTTTTA
1 A-TTAAATTAGG-TTAGGGTTTTTA
*
57828628 ATTAAATTAAGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57828651 AGTT-AATTAGGTTAGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*** *
57828674 AGTT-AAGGGGGTTGGGGTTTTTA
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57828697 AGT---TTAGGGTTTAGGGTTTTTA
1 ATTAAATTA-GG-TTAGGGTTTTTA
57828719 AGTT-AATTAGGTTAGGGTTTTT-
1 A-TTAAATTAGGTTAGGGTTTTTA
*
57828741 ATGT---TTAAGGTTTATGG-TTTTA
1 AT-TAAATT-AGG-TTAGGGTTTTTA
57828763 ATTAAATTAGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTTTTA
57828786 A
1 A
57828787 GTTTAGGGTT
Statistics
Matches: 2116, Mismatches: 315, Indels: 478
0.73 0.11 0.16
Matches are distributed among these distances:
16 23 0.01
17 11 0.01
18 16 0.01
19 19 0.01
20 54 0.03
21 113 0.05
22 509 0.24
23 1156 0.55
24 106 0.05
25 65 0.03
27 6 0.00
28 2 0.00
29 36 0.02
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (23 bp):
ATTAAATTAGGTTAGGGTTTTTA
Found at i:57826193 original size:38 final size:38
Alignment explanation
Indices: 57826151--57826281 Score: 127
Period size: 38 Copynumber: 3.2 Consensus size: 38
57826141 TTTAATTAGG
*
57826151 TTAGGGTTTTTAAGTTAAGGGTGTTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGTTAAGGGAGTTAGGGTTTTTAAGT
* *** *
57826189 TTAGGGTTTTTAATTTAATTAAGTTCGGGTTTTTAAGTT
1 TTAGGGTTTTTAAGTTAAGGGAGTTAGGGTTTTTAAG-T
*
57826228 AATTAGGTTAAGTTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAGT
1 --TTAGG----G-TTTTTAAGTTAAGGGAGTTAGGGTTTTTAAGT
57826273 TTAGGGTTT
1 TTAGGGTTT
57826282 AATGTTTTTA
Statistics
Matches: 73, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
38 34 0.47
39 2 0.03
41 5 0.07
43 5 0.07
45 2 0.03
46 25 0.34
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.49
Consensus pattern (38 bp):
TTAGGGTTTTTAAGTTAAGGGAGTTAGGGTTTTTAAGT
Found at i:57826205 original size:14 final size:15
Alignment explanation
Indices: 57826174--57826205 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
57826164 GTTAAGGGTG
57826174 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
57826189 TTAGGGTTTTTAA-T
1 TTAGGGTTTTTAAGT
57826203 TTA
1 TTA
57826206 ATTAAGTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (15 bp):
TTAGGGTTTTTAAGT
Found at i:57826290 original size:45 final size:43
Alignment explanation
Indices: 57826095--57828846 Score: 1638
Period size: 45 Copynumber: 61.5 Consensus size: 43
57826085 AGTAAAATTA
*
57826095 TTAA-TTTAGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTTAGGTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* **
57826137 TTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGTGTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAG-GTTAGGGTTT
* * *
57826183 TTAAG--T---TTAGGGTTTTTAATTTAATTAAGTTCGGGTTT
1 TTAAGTTTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* * ***
57826221 TTAAGTTAATTAGGTTAAGTTTTTTAAGTTAAGGGGGTTAGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
** * *
57826267 TTAAGTTTAGGGTTTAATGTTTTTAATTTAATTACGTTAGGG-TT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57826311 TTAAGTTAATTAGGTTAGGGTTTTTAAGTT-A--AGG---GAGTTAAT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTT--T
* * *
57826353 TTAA--TTAGGTTAGAGTTTTTAATTTAATTAGGTTAAGGTTT
1 TTAAGTTTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* ***
57826394 TTAAGTTAATTAGGTTAGGGTATTTAAGTTAAGGGGGTTAGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57826440 TTAAGTTTAGGGTTTAAGGTTTTTAATTTAATT-GGCTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTT
57826485 TTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* * *
57826530 TTAATTAAATTAGGTTAGGATTTTTAATTTAATTAGGTTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*** *
57826576 TTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGGGGTTAGGGTCT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57826622 TTAAGTTTAGGGTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* * * *
57826667 TTAAGTTAATGGGGTTAGGGTTTTTAAGTTGA--GGGTTTAAGGTTT
1 TTAAGTT--T-AGGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTT
* *
57826712 TTAATTTAATTAGGTTAGGGTTTTTAAGTTAACTAGGTTAGAGG-TT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAG-GGTTT
57826758 TTAAGTTTAGGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* * *
57826803 TTAATTCAATTATGTTAGGGTTTTTAGGTTAATTAGGTTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57826849 TTAAGTTAAGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAGTTTA--GGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
*
57826893 TTAATTTAAGTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAGTT---TAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
*
57826938 TTAATTTAATTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* *
57826983 TTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57827029 TTAAGTTTAGGGTTTAAGGTTTTTAA-TTAAATAAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
*
57827074 TTAAGTTTAGGATTTAGGGTTTTTAA-TTAAATTAGGTTAGAGTTT
1 TTAAGTTTAGG--TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* *
57827119 TTAATTTAATTAGGTTAGGATTTTTAAGTTAATTAGGTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* * * *
57827165 TTAACTTAAGGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAAGATTT
1 TTAAGTTTA---GGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* * *
57827210 TTAAGTGAATTAGGTTAGTGTTTTTAAGTT--TAAGGTTTAAGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTT
* *
57827255 TTAATTAAATTATGTTAGGG-TTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* * * *
57827299 TT-AGTTAAATTAGGTTATGGTTTTTAATTTAATTAGTTTATGGTTT
1 TTAAG-T---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
57827345 TTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* * *
57827390 TAAATTAAATTAGGTTAGAGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
*
57827435 TTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57827481 TTAAGTTTAGGGTTTAGGGTTTAGGGTTTTTAA-TTAAATCAGGTTAGGGTTT
1 TT-A----A--GTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* *
57827533 TTAATTTAATTAGGTTAGGG-TTTTAAGTTAATTAGGTTAGTGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57827578 TTAAGTTAAGGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTT
1 TTAAGTTTA---GGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* * *
57827623 TTAA-TTTAATTGGGTTAGGGTTTTTAATTTAATTAGGTTAAGATTT
1 TTAAGTTT-A---GGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57827669 TTAAGTTAATTAGGTTAAGGTTTTTAAGTTAA-GAGGGTTAGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTA-GGTTAGGGTTT
*
57827715 TTAAGTTTAGGGTTTAAGGTTTTTAAG-T--TTAGGGTTTAAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTTAATTA-GG-TT-AGGGTTT
* *
57827760 TAATCAA-ATTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAAGGTTT
1 T--T-AAGTTTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTT
* *
57827804 TGAATTAAATTAGGTTAGGGTTTTTAAG-T--TTAGG---GGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* * * *
57827844 TTAATTAAATTAGGTTAGTGTTTTTAATTTAATTAGCTTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57827890 TTAAGTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAAGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57827936 TTAAGTTAAGGGGTTTAGGG-TTTTAAG-T--TTAGGGTTTAGGGTTTT
1 TTAAGTTTA--GG-TTAGGGTTTTTAAGTTAATTA-GG-TTAGGG-TTT
* *
57827981 AAATTAATTTGGTTAGGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGAGTTT
1 ---TTAA---GTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
*
57828032 TTAA-TTTAATTTGGTTAGGGTTTTTAAGTTAATGAGGTTAGGGTTT
1 TTAAGTTT-A---GGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57828078 TTAAG--T---TTAGGGTTTTTAAGTGAATTAGGTTAGGGTTT
1 TTAAGTTTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* * *
57828116 TTAAGTTTATGGTTTAAGGTTTTTAA-TTAAATTATGTTAGAGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* *
57828161 TTAATTTTAGGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGATTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* * *
57828206 TTAATTTAATTAGGTTATGGTTTTTAAGTTAATTAGGTTAGAGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57828252 TTAAGTTTAGGTTTTGGGTTTTTAA-TTAAATTAAGTTAGGG-TT
1 TTAAGTTTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
57828295 TTAAGTTTAGGGTTTAGGG-TTTTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
** *
57828339 TTATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTATGGTTT
1 TTAAGT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57828384 TTAAGTTAAGAGGGTTAGGGTTTTTAAGTT--TAAGGTTTAGGGTTT
1 TTAAGTT--TA-GGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTT
*
57828429 TTAATTAAATTAGGTTAGGGTTTTTAAG-----T---TTAGGGTTT
1 TTAAGT---TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*** *
57828467 TTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAAGGGGTTAGAGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* **
57828513 TTAACTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGGTTAGGGTTT
1 TTAA-GT--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
*
57828558 TTAAGTTTAGGGTTTAGGGTTTGTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
*
57828603 TTAAGTTTAAGGTTTAGGGTTTTTAA-TTAAATTAAGTTAGGGTTT
1 TTAAGTTT-AGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
*** *
57828648 TTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGGGGTTGGGGTTT
1 TTAAG-T--TTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
57828694 TTAAGTTTAGGGTTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
1 TTAAGTTTA-GG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
* *
57828739 TTATGTTTAAGGTTTATGG-TTTTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTT-AGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
57828783 TTAAG--T---TTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTT
1 TTAAGTTTAGGTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTT
* *
57828821 CTAAGTTAAGGGGGTTAGGGTTTTTA
1 TTAAGTTTA---GGTTAGGGTTTTTA
57828847 TGTTTAGGGT
Statistics
Matches: 2240, Mismatches: 232, Indels: 472
0.76 0.08 0.16
Matches are distributed among these distances:
37 24 0.01
38 130 0.06
39 3 0.00
40 35 0.02
41 9 0.00
42 23 0.01
43 104 0.05
44 202 0.09
45 908 0.41
46 620 0.28
47 56 0.03
48 50 0.02
49 1 0.00
50 15 0.01
51 19 0.01
52 36 0.02
53 2 0.00
54 3 0.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.48
Consensus pattern (43 bp):
TTAAGTTTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTT
Found at i:57826298 original size:68 final size:67
Alignment explanation
Indices: 57826215--57828896 Score: 1704
Period size: 68 Copynumber: 39.9 Consensus size: 67
57826205 AATTAAGTTC
* * * ***
57826215 GGGTTTTTAAGTTAATTAGGTTAAGTTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAGTTTAGGGT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-
57826280 TTA
65 TTA
** * *
57826283 ATGTTTTTAATTTAATTACGTTAGGG-TTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGG-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGGT
57826346 -A
66 TA
* * *
57826347 --G---TTAATTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAAGGTTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57826406 GGTTA
63 GGTTA
* * *** *
57826411 GGGTATTTAAGTTAAGGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAAGGTTTTTAA-TTTAAT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTT-A-
*
57826472 TGGCTTA
62 -GGGTTA
* *
57826479 GGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTTTTAATTAAATT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGT---TT
57826541 A-GGTTA
61 AGGGTTA
* *
57826547 GGATTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGGG
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTA--GG
57826612 GTTA
64 GTTA
* * * * *
57826616 GGGTCTTTAAGTTT-A--GGGTTTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATG
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT--TA
57826678 GGGTTA
62 GGGTTA
* * * * *
57826684 GGGTTTTTAAGTTGA--GGGTTTAAGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAACTA
1 GGGTTTTTAATTTAATTAGG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT---TA
57826747 -GGTTA
62 GGGTTA
* *
57826752 GAGG-TTTTAAGTTT-A--GGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAATTCAA
1 G-GGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGT---
*
57826812 TTA-TGTTA
59 TTAGGGTTA
** **
57826820 GGGTTTTTAGGTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGGTTAGGGTTTTTAAGTTTAGGGT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-
57826884 TTA
65 TTA
*
57826887 GGGTTTTTAATTTAAGTAGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTTTTAA-TTTAAT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTT-A-
*
57826948 TAGGTTA
62 -GGGTTA
* *
57826955 GGGTTTTTAAGTTT-A--GGGTTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAA-TTTAAT
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTT-A-
*
57827016 TAGGTTA
62 -GGGTTA
* * *
57827023 GGGTTTTTAAGTTT-A--GGGTTTAAGGTTTTTAA-TTAAATAAGGTTAGGGTTTTTAAGTTTAG
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAG
*
57827084 GATTTA
63 G-GTTA
* * * *
57827090 GGGTTTTTAATTAAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAGGATTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57827154 GGTTA
63 GGTTA
* *** * *
57827159 GGGTTTTTAACTTAAGGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAAGATTTTTAAGTGAATT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGT---TT
57827221 A-GGTTA
61 AGGGTTA
* * *
57827227 GTGTTTTTAAGTTT-A--AGGTTTAAGGTTTTTAA-TTAAATTATGTTAGGG-TTTTAAGTTTAG
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAG
57827287 GGTTTA
63 GG-TTA
* * * * * *
57827293 GGGTTTTTAGTTAAATTAGGTTATGGTTTTTAATTTAATTAGTTTATGGTTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57827357 GGTTA
63 GGTTA
* * *
57827362 GGGTTTTTAAGTTT-A--GGGTTTAGGG-TTTTAAATTAAATTAGGTTAGAGTTTTTAAGTTTAG
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAG
57827423 GGTTTA
63 GG-TTA
57827429 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGGT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTT-A----A--GT
57827494 TTAGGGTTTA
59 TTAGGG-TTA
* * *
57827504 GGGTTTTTAATTAAATCAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG-TTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57827567 GGTTA
63 GGTTA
* * ***
57827572 GTGTTTTTAAGTTAAGGGGGTTAGGGTTTTTAAG-T--TTAGGGTTTAGGGTTTTTAA-TTTAAT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-GG-TTAGGGTTTTTAAGTTT-A-
57827633 TGGGTTA
62 -GGGTTA
* * * *
57827640 GGGTTTTTAATTTAATTAGGTTAAGATTTTTAAGTTAATTAGGTTAAGGTTTTTAAGTTAAGAGG
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT--TAGG
57827705 GTTA
64 GTTA
* *
57827709 GGGTTTTTAAGTTT-A--GGGTTTAAGGTTTTTAAG-T--TTAGGGTTTAAGGGTTTTAATCAA-
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTTAATTA-GG-TT-AGGGTTTT--T-AAG
*
57827767 ATTA-GGTTA
58 TTTAGGGTTA
* * *
57827776 GGGTTTTTAAGTTT-A--GGGTTTAAGGTTTTGAA-TTAAATTAGGTTAGGGTTTTTAAGTTTA-
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAG
57827836 GG---
63 GGTTA
* * * *
57827838 GGGTTTTTAATTAAATTAGGTTAGTGTTTTTAATTTAATTAGCTTAGGGTTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57827902 GGTTA
63 GGTTA
* * **
57827907 GGGTTTTTAAGTTAATTAGGTTAAGGTTTTTAAGTTAA-GGGGTTTAGGG-TTTTAAGTTTAGGG
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTTTTAAGTTTAGGG
57827970 TTTA
65 -TTA
** *
57827974 GGGTTTTAAATTAATTTGGTTAGGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGAGTTTTTAA-T
1 GGG-TTT---TTAATTTAATTA-GG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGT
*
57828037 TTAATTTGGTTA
59 TT-A--GGGTTA
* *
57828049 GGGTTTTTAAGTTAATGAGGTTAGGGTTTTTAAG-----T---TTAGGGTTTTTAAGTGAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGT---TTAG
57828105 GGTTA
63 GGTTA
* * * *
57828110 GGGTTTTTAAGTTT-A-T-GGTTTAAGGTTTTTAA-TTAAATTATGTTAGAGTTTTTAATTTTAG
1 GGGTTTTTAA-TTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAG
57828171 GGTTTA
63 GG-TTA
* * * *
57828177 GGGTTTTTAATTAAATTAGGTTAGGATTTTTAATTTAATTAGGTTATGGTTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57828241 GGTTA
63 GGTTA
* * * *
57828246 GAGTTTTTAA-GT--TTAGGTTTTGGGTTTTTAA-TTAAATTAAGTTAGGG-TTTTAAGTTTAGG
1 GGGTTTTTAATTTAATTAGG-TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTAGG
57828306 GTTTA
64 G-TTA
* *
57828311 GGG-TTTTAATTAAATTAGGTTAGGGTTTTT-ATTTAATTAGGTTAGGGTTTTTAAGTTAATTA-
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAG-T--TTAG
57828373 GGTTA
63 GGTTA
* * * * *
57828378 TGGTTTTTAAGTTAA-GAGGGTTAGGGTTTTTAAGTT--TAAGGTTTAGGGTTTTTAATTAAATT
1 GGGTTTTTAATTTAATTA-GGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTTTTAAGT---TT
57828440 A-GGTTA
61 AGGGTTA
* *
57828446 GGG---TT--TTT-A--AGTTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAAGGG
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTT-TA-GG
57828503 GTTA
64 GTTA
* * **
57828507 GAGTTTTTAACTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGGTTAGGGTTTTTAAGTTTAGGGT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-
57828571 TTA
65 TTA
* * * *
57828574 GGGTTTGTAATTAAATTAGGTTAGGGTTTTTAAGTT--TAAGGTTTAGGGTTTTTAATTAAATTA
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGG-TTAGGGTTTTTAAGT---TTA
*
57828637 -AGTTA
62 GGGTTA
* *** *
57828642 GGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGGGGTTGGGGTTTTTAAGTTTAGGGT
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGG-
57828707 TTA
65 TTA
* * * * *
57828710 GGGTTTTTAAGTTAATTAGGTTAGGGTTTTTATGTT--TAAGGTTTATGGTTTTAATTAA-ATTA
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGG-TTA-GGGTTT--TTAAGTTTA
57828772 -GGTTA
62 GGGTTA
* * *
57828777 GGG---TT--TTT-A--AGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTCTAAGTTAAGGG
1 GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTA--G
57828833 GGTTA
63 GGTTA
*
57828838 GGGTTTTT-ATGT--TTAGGGTTTAAGGG-TTTTAA-TTAAATTAGGTTAGGGTTTTTAA-TTTA
1 GGGTTTTTAATTTAATTA-GG-TT-AGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAAGTTTA
57828897 AGAGTATTAA
Statistics
Matches: 2133, Mismatches: 240, Indels: 483
0.75 0.08 0.17
Matches are distributed among these distances:
57 3 0.00
58 5 0.00
59 40 0.02
60 60 0.03
61 66 0.03
62 24 0.01
63 37 0.02
64 32 0.02
65 56 0.03
66 103 0.05
67 375 0.18
68 838 0.39
69 297 0.14
70 48 0.02
71 37 0.02
72 6 0.00
73 24 0.01
74 16 0.01
75 64 0.03
76 2 0.00
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.48
Consensus pattern (67 bp):
GGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTTAGGGT
TA
Found at i:57826393 original size:60 final size:59
Alignment explanation
Indices: 57826289--57826402 Score: 183
Period size: 60 Copynumber: 1.9 Consensus size: 59
57826279 TTTAATGTTT
*
57826289 TTAATTTAATTACGTTAGGGTTTTAAGTTAATTAGGTTAGGGTTTTTAAGTTAAGGGAG
1 TTAATTTAATTACGTTAGGGTTTTAAGTTAATTAGGTTAAGGTTTTTAAGTTAAGGGAG
* * *
57826348 TTAATTTAATTAGGTTAGAGTTTTTAATTTAATTAGGTTAAGGTTTTTAAGTTAA
1 TTAATTTAATTACGTTAG-GGTTTTAAGTTAATTAGGTTAAGGTTTTTAAGTTAA
57826403 TTAGGTTAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
59 17 0.34
60 33 0.66
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (59 bp):
TTAATTTAATTACGTTAGGGTTTTAAGTTAATTAGGTTAAGGTTTTTAAGTTAAGGGAG
Found at i:57827497 original size:7 final size:7
Alignment explanation
Indices: 57827485--57827509 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
57827475 GGGTTTTTAA
57827485 GTTTAGG
1 GTTTAGG
57827492 GTTTAGG
1 GTTTAGG
57827499 GTTTAGG
1 GTTTAGG
57827506 GTTT
1 GTTT
57827510 TTAATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.40, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:57827996 original size:29 final size:30
Alignment explanation
Indices: 57827964--57828031 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
57827954 GGTTTTAAGT
*
57827964 TTAGGGTTTAGGGTTTTAAATT-AATTTGG
1 TTAGGGTTTAGGGTTTTAAATTAAATTAGG
*
57827993 TTAGGGTTTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTAGGGTTTTAAATTAAATTAGG
*
57828023 TTAGAGTTT
1 TTAGGGTTT
57828032 TTAATTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 21 0.60
30 14 0.40
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (30 bp):
TTAGGGTTTAGGGTTTTAAATTAAATTAGG
Found at i:57828089 original size:15 final size:15
Alignment explanation
Indices: 57828069--57828098 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
57828059 GTTAATGAGG
57828069 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
57828084 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
57828099 GAATTAGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.53
Consensus pattern (15 bp):
TTAGGGTTTTTAAGT
Found at i:57828097 original size:38 final size:38
Alignment explanation
Indices: 57828046--57828130 Score: 143
Period size: 38 Copynumber: 2.2 Consensus size: 38
57828036 TTTAATTTGG
*
57828046 TTAGGGTTTTTAAGTTAATGAGGTTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGTGAATGAGGTTAGGGTTTTTAAGT
*
57828084 TTAGGGTTTTTAAGTGAATTAGGTTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGTGAATGAGGTTAGGGTTTTTAAGT
*
57828122 TTATGGTTT
1 TTAGGGTTT
57828131 AAGGTTTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (38 bp):
TTAGGGTTTTTAAGTGAATGAGGTTAGGGTTTTTAAGT
Found at i:57828463 original size:15 final size:15
Alignment explanation
Indices: 57828443--57828473 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
57828433 TTAAATTAGG
57828443 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
57828458 TTAGGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
57828473 T
1 T
57828474 AATTAGGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
TTAGGGTTTTTAAGT
Found at i:57828469 original size:38 final size:38
Alignment explanation
Indices: 57828412--57828547 Score: 148
Period size: 38 Copynumber: 3.3 Consensus size: 38
57828402 GGTTTTTAAG
57828412 TTTAAGGTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTT
1 TTTAA-GTTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTT
57828451 TTTAAGTTTAGGGTTTTTAAGTTAATTAGGTTAGGGTT
1 TTTAAGTTTAGGGTTTTTAAGTTAATTAGGTTAGGGTT
* *
57828489 TTTAAGTTAAAGGGGTTAGAGTTTTTAACTTAATTAGGTTAGGGTT
1 TTTAAG-T-------TTAGGGTTTTTAAGTTAATTAGGTTAGGGTT
*
57828535 TTTAAGTTAAGGG
1 TTTAAGTTTAGGG
57828548 GTTAGGGTTT
Statistics
Matches: 84, Mismatches: 4, Indels: 19
0.79 0.04 0.18
Matches are distributed among these distances:
38 40 0.48
39 8 0.10
45 1 0.01
46 35 0.42
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.46
Consensus pattern (38 bp):
TTTAAGTTTAGGGTTTTTAAGTTAATTAGGTTAGGGTT
Found at i:57828819 original size:23 final size:22
Alignment explanation
Indices: 57828789--57828894 Score: 85
Period size: 23 Copynumber: 4.7 Consensus size: 22
57828779 GTTTTTAAGT
57828789 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATT-AATTAGG
* ***
57828812 TTAGGGTTTCTAAGTTAAGGGGG
1 TTAGGGTTTTTAA-TTAATTAGG
57828835 TTAGGGTTTTT-ATGT--TTAGGG
1 TTAGGGTTTTTAAT-TAATTA-GG
57828856 TTTAAGGG-TTTTAATTAAATTAGG
1 -TT-AGGGTTTTTAATT-AATTAGG
57828880 TTAGGGTTTTTAATT
1 TTAGGGTTTTTAATT
57828895 TAAGAGTATT
Statistics
Matches: 65, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
21 3 0.05
22 13 0.20
23 42 0.65
24 4 0.06
25 3 0.05
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.47
Consensus pattern (22 bp):
TTAGGGTTTTTAATTAATTAGG
Found at i:57828826 original size:38 final size:38
Alignment explanation
Indices: 57828705--57828832 Score: 150
Period size: 38 Copynumber: 3.2 Consensus size: 38
57828695 TAAGTTTAGG
*
57828705 GTTTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAT
1 GTTTAGGGTTTTTAA-TTAAATTAGGTTAGGGTTTTTAA
*
57828743 GTTTAAGGTTTATGGTTTTAATTAAATTAGGTTAGGGTTTTTAA
1 GTTT-AGG-----GTTTTTAATTAAATTAGGTTAGGGTTTTTAA
*
57828787 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTCTAA
1 GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
*
57828825 GTTAAGGG
1 GTTTAGGG
57828833 GGTTAGGGTT
Statistics
Matches: 78, Mismatches: 5, Indels: 14
0.80 0.05 0.14
Matches are distributed among these distances:
38 40 0.51
39 3 0.04
43 5 0.06
44 30 0.38
ACGTcount: A:0.25, C:0.01, G:0.26, T:0.48
Consensus pattern (38 bp):
GTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAA
Found at i:57828969 original size:25 final size:25
Alignment explanation
Indices: 57828940--57828987 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
57828930 TATAAAAAAT
57828940 TTCTATTTTATTACATCAAATAAAC
1 TTCTATTTTATTACATCAAATAAAC
57828965 TTCTATTTTATTACATCAAATAA
1 TTCTATTTTATTACATCAAATAA
57828988 TATCAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (25 bp):
TTCTATTTTATTACATCAAATAAAC
Found at i:57828989 original size:28 final size:26
Alignment explanation
Indices: 57828931--57828987 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
57828921 CTCAAATAAT
* *
57828931 ATAAAAAATTTCTATTTTATTACATC
1 ATAATAAACTTCTATTTTATTACATC
57828957 A-AATAAACTTCTATTTTATTACATC
1 ATAATAAACTTCTATTTTATTACATC
57828982 A-AATAA
1 ATAATAA
57828988 TATCAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (26 bp):
ATAATAAACTTCTATTTTATTACATC
Found at i:57831295 original size:11 final size:11
Alignment explanation
Indices: 57831279--57831309 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
57831269 AAAAAGGGAG
57831279 TTAAGAGAAAC
1 TTAAGAGAAAC
*
57831290 TTAAGAGGAAC
1 TTAAGAGAAAC
57831301 TTAAGAGAA
1 TTAAGAGAA
57831310 TTTTTGAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (11 bp):
TTAAGAGAAAC
Found at i:57831333 original size:11 final size:11
Alignment explanation
Indices: 57831313--57831352 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
57831303 AAGAGAATTT
57831313 TTGA-AGGAAA
1 TTGAGAGGAAA
57831323 TTGAGAGGAAA
1 TTGAGAGGAAA
*
57831334 TTGAGAGAAAA
1 TTGAGAGGAAA
57831345 TTTGAGAG
1 -TTGAGAG
57831353 AGGATTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 4 0.15
11 16 0.59
12 7 0.26
ACGTcount: A:0.45, C:0.00, G:0.33, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:57831544 original size:51 final size:51
Alignment explanation
Indices: 57831468--57831567 Score: 200
Period size: 51 Copynumber: 2.0 Consensus size: 51
57831458 GGTCAAGTCA
57831468 CGGCCACGTCAGCGCGAGTTGCTGACATGGCAGCAAATCGCGTCCTAGAAG
1 CGGCCACGTCAGCGCGAGTTGCTGACATGGCAGCAAATCGCGTCCTAGAAG
57831519 CGGCCACGTCAGCGCGAGTTGCTGACATGGCAGCAAATCGCGTCCTAGA
1 CGGCCACGTCAGCGCGAGTTGCTGACATGGCAGCAAATCGCGTCCTAGA
57831568 GGGTGCAATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.23, C:0.30, G:0.31, T:0.16
Consensus pattern (51 bp):
CGGCCACGTCAGCGCGAGTTGCTGACATGGCAGCAAATCGCGTCCTAGAAG
Found at i:57832748 original size:18 final size:19
Alignment explanation
Indices: 57832717--57832766 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
57832707 AATTAACAAG
57832717 AAAATAATAAC-AAAACAGT
1 AAAA-AATAACAAAAACAGT
* *
57832736 AAAAAATAGCAAAAATAGT
1 AAAAAATAACAAAAACAGT
*
57832755 AAAAAAAAACAA
1 AAAAAATAACAA
57832767 CCATTATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.74, C:0.08, G:0.06, T:0.12
Consensus pattern (19 bp):
AAAAAATAACAAAAACAGT
Found at i:57833402 original size:3 final size:3
Alignment explanation
Indices: 57833394--57833476 Score: 157
Period size: 3 Copynumber: 27.7 Consensus size: 3
57833384 TTAGGGTTAG
57833394 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
57833442 AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
57833477 TGTAATAACT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:57835383 original size:12 final size:12
Alignment explanation
Indices: 57835366--57835390 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57835356 GGCTTGTAAA
57835366 GCCGAAGAACTT
1 GCCGAAGAACTT
57835378 GCCGAAGAACTT
1 GCCGAAGAACTT
57835390 G
1 G
57835391 TAAAGCTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.16
Consensus pattern (12 bp):
GCCGAAGAACTT
Found at i:57840273 original size:3 final size:3
Alignment explanation
Indices: 57840265--57840349 Score: 170
Period size: 3 Copynumber: 28.3 Consensus size: 3
57840255 GGGGTGTTAC
57840265 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
57840313 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
57840350 GAAAAAATGG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 82 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:57841496 original size:21 final size:20
Alignment explanation
Indices: 57841434--57841502 Score: 72
Period size: 21 Copynumber: 3.5 Consensus size: 20
57841424 AGTAGGTAAT
57841434 TGAGTTGGGGTAGCCTG-T-
1 TGAGTTGGGGTAGCCTGTTC
*
57841452 TGAGTTGGGGTA-CTCTCTTAC
1 TGAGTTGGGGTAGC-CTGTT-C
*
57841473 TGATTTGGGGTAGCCTGTTGC
1 TGAGTTGGGGTAGCCTGTT-C
57841494 TGAGTTGGG
1 TGAGTTGGG
57841503 ACACCAACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
17 1 0.02
18 14 0.34
19 1 0.02
21 24 0.59
22 1 0.02
ACGTcount: A:0.12, C:0.13, G:0.39, T:0.36
Consensus pattern (20 bp):
TGAGTTGGGGTAGCCTGTTC
Found at i:57842159 original size:9 final size:9
Alignment explanation
Indices: 57842145--57842196 Score: 86
Period size: 9 Copynumber: 5.6 Consensus size: 9
57842135 TTTGGTTAAA
57842145 AATTACCCG
1 AATTACCCG
57842154 AATTACCCG
1 AATTACCCG
57842163 AATTACCCG
1 AATTACCCG
57842172 AAAATTACCCG
1 --AATTACCCG
57842183 AATTACCCG
1 AATTACCCG
57842192 AATTA
1 AATTA
57842197 AATCACTACA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
9 32 0.78
11 9 0.22
ACGTcount: A:0.38, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:57842179 original size:20 final size:20
Alignment explanation
Indices: 57842145--57842193 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
57842135 TTTGGTTAAA
57842145 AATTACCCG--AATTACCCG
1 AATTACCCGAAAATTACCCG
57842163 AATTACCCGAAAATTACCCG
1 AATTACCCGAAAATTACCCG
57842183 AATTACCCGAA
1 AATTACCCGAA
57842194 TTAAATCACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.31
20 20 0.69
ACGTcount: A:0.39, C:0.31, G:0.10, T:0.20
Consensus pattern (20 bp):
AATTACCCGAAAATTACCCG
Found at i:57842410 original size:14 final size:14
Alignment explanation
Indices: 57842391--57842419 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
57842381 AAAATAAGAT
57842391 TGCATACATATACA
1 TGCATACATATACA
57842405 TGCATACATATACA
1 TGCATACATATACA
57842419 T
1 T
57842420 ATATAATCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (14 bp):
TGCATACATATACA
Found at i:57844193 original size:28 final size:28
Alignment explanation
Indices: 57844152--57844206 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
57844142 TACACACACA
*
57844152 TAAAAAATAGTCACTACATGCATATTAT
1 TAAAAAATACTCACTACATGCATATTAT
*
57844180 TAAAAAATACTCACTGCATGCATATTA
1 TAAAAAATACTCACTACATGCATATTA
57844207 AAAAATAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31
Consensus pattern (28 bp):
TAAAAAATACTCACTACATGCATATTAT
Found at i:57844211 original size:25 final size:27
Alignment explanation
Indices: 57844152--57844213 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
57844142 TACACACACA
*
57844152 TAAAAAATAGTCACTACATGCATATTAT
1 TAAAAAATACTCACTACATGCA-ATTAT
*
57844180 TAAAAAATACTCACTGCATGC-A-TAT
1 TAAAAAATACTCACTACATGCAATTAT
57844205 TAAAAAATA
1 TAAAAAATA
57844214 GTCAACACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 12 0.38
26 1 0.03
28 19 0.59
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (27 bp):
TAAAAAATACTCACTACATGCAATTAT
Found at i:57846484 original size:6 final size:6
Alignment explanation
Indices: 57846475--57846646 Score: 65
Period size: 6 Copynumber: 27.7 Consensus size: 6
57846465 AAATAACCCT
* * ** * * **
57846475 AAATCA AAATCC AAATAA AAATTT AAATCG AGATCA AAATTG AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* * * * ** *
57846523 AAATCT AAATCT AAATCA AGATCG AAATTG AAATCA AAATAA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
* ** ** * **
57846571 GAATCA GTGAGTGTTTCA AAATTG AAATCA AAATCA AAATCG AAATTG
1 AAATCA ---A---AATCA AAATCA AAATCA AAATCA AAATCA AAATCA
**
57846619 AAATCA AAATCA AAATGG AAATCA AAAT
1 AAATCA AAATCA AAATCA AAATCA AAAT
57846647 TGCAATCGAA
Statistics
Matches: 118, Mismatches: 42, Indels: 12
0.69 0.24 0.07
Matches are distributed among these distances:
6 114 0.97
9 1 0.01
12 3 0.03
ACGTcount: A:0.56, C:0.12, G:0.09, T:0.23
Consensus pattern (6 bp):
AAATCA
Found at i:57846502 original size:18 final size:18
Alignment explanation
Indices: 57846481--57846658 Score: 81
Period size: 18 Copynumber: 9.6 Consensus size: 18
57846471 CCCTAAATCA
* * *
57846481 AAATCCAAATAAAAATTT
1 AAATCAAAATCAAAATTG
* *
57846499 AAATCGAGATCAAAATTG
1 AAATCAAAATCAAAATTG
*
57846517 AAATCAAAATCTAAATCT-
1 AAATCAAAATCAAAAT-TG
* *
57846535 AAATCAAGATCGAAATTG
1 AAATCAAAATCAAAATTG
* *
57846553 AAATCAAAAT-AAAAATC
1 AAATCAAAATCAAAATTG
**
57846570 AGAATCAGTGAGTGTTTCAAAATTG
1 A-AATCA---A---AATCAAAATTG
*
57846595 AAATCAAAATCAAAATCG
1 AAATCAAAATCAAAATTG
** **
57846613 AAATTGAAATCAAAATCA
1 AAATCAAAATCAAAATTG
**
57846631 AAATGGAAATCAAAATTG
1 AAATCAAAATCAAAATTG
* *
57846649 CAATCGAAAT
1 AAATCAAAAT
57846659 AACCCTAAAT
Statistics
Matches: 122, Mismatches: 28, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
17 6 0.05
18 101 0.83
19 1 0.01
21 2 0.02
24 6 0.05
25 6 0.05
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (18 bp):
AAATCAAAATCAAAATTG
Found at i:57846513 original size:30 final size:30
Alignment explanation
Indices: 57846477--57846533 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
57846467 ATAACCCTAA
*
57846477 ATCAAAATCCAAATAAAAATTTAAATCGAG
1 ATCAAAATCCAAATAAAAATCTAAATCGAG
** *
57846507 ATCAAAATTGAAATCAAAATCTAAATC
1 ATCAAAATCCAAATAAAAATCTAAATC
57846534 TAAATCAAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
ATCAAAATCCAAATAAAAATCTAAATCGAG
Found at i:57846569 original size:36 final size:36
Alignment explanation
Indices: 57846481--57846569 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
57846471 CCCTAAATCA
* * *
57846481 AAATCCAAATAAAAATTTAAATCGAGATCAAAATTG
1 AAATCAAAATAAAAATCTAAATCAAGATCAAAATTG
** *
57846517 AAATCAAAATCTAAATCTAAATCAAGATCGAAATTG
1 AAATCAAAATAAAAATCTAAATCAAGATCAAAATTG
57846553 AAATCAAAATAAAAATC
1 AAATCAAAATAAAAATC
57846570 AGAATCAGTG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.24
Consensus pattern (36 bp):
AAATCAAAATAAAAATCTAAATCAAGATCAAAATTG
Found at i:57846630 original size:24 final size:24
Alignment explanation
Indices: 57846589--57846640 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
57846579 GAGTGTTTCA
57846589 AAATTGAAATCAAAATCAAAATCG
1 AAATTGAAATCAAAATCAAAATCG
*
57846613 AAATTGAAATCAAAATCAAAATGG
1 AAATTGAAATCAAAATCAAAATCG
57846637 AAAT
1 AAAT
57846641 CAAAATTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.21
Consensus pattern (24 bp):
AAATTGAAATCAAAATCAAAATCG
Found at i:57855180 original size:9 final size:8
Alignment explanation
Indices: 57855165--57855189 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
57855155 GGCTTCATTC
57855165 ATTTTTTT
1 ATTTTTTT
57855173 ATTTTTTT
1 ATTTTTTT
57855181 ATTTTTTT
1 ATTTTTTT
57855189 A
1 A
57855190 AATTTCGACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
ATTTTTTT
Found at i:57855507 original size:13 final size:13
Alignment explanation
Indices: 57855469--57855509 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
57855459 CTTTCTTTAC
57855469 AACAAAATTATAT
1 AACAAAATTATAT
*
57855482 AAC-ATATTAATAT
1 AACAAAATT-ATAT
57855495 AACAAAATTATAT
1 AACAAAATTATAT
57855508 AA
1 AA
57855510 TTATTCAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 4 0.17
13 16 0.67
14 4 0.17
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (13 bp):
AACAAAATTATAT
Found at i:57856136 original size:21 final size:21
Alignment explanation
Indices: 57856078--57856164 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
57856068 CCTGATCAGT
57856078 ATACGACACAT-AAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
57856098 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
* *
57856119 ATACAACACATAAAGTGCCTA
1 ATACGACACATAAAGTGCCTG
*
57856140 ATGTATGACACATAAAGTGCCTG
1 A--TACGACACATAAAGTGCCTG
57856163 AT
1 AT
57856165 CGGCAAAGCC
Statistics
Matches: 52, Mismatches: 12, Indels: 5
0.75 0.17 0.07
Matches are distributed among these distances:
20 9 0.17
21 25 0.48
23 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:57856458 original size:16 final size:17
Alignment explanation
Indices: 57856437--57856468 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
57856427 TAATAATAGT
57856437 ACTTACCTTA-TATTTC
1 ACTTACCTTATTATTTC
57856453 ACTTACCTTATTATTT
1 ACTTACCTTATTATTT
57856469 GCTTATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (17 bp):
ACTTACCTTATTATTTC
Found at i:57859301 original size:41 final size:40
Alignment explanation
Indices: 57859250--57859329 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 40
57859240 CATGTTAACG
* *
57859250 CATATCGATGCCACTATCCCAGACAGGGTCTTATACGAAT
1 CATATCGATGCCAATATCCCAGACAGGGTCTTACACGAAT
* *
57859290 CATATACGATGCCAATGTCCCAGACATGGTCTTACACGAA
1 CATAT-CGATGCCAATATCCCAGACAGGGTCTTACACGAA
57859330 ATCACACCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 5 0.14
41 30 0.86
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (40 bp):
CATATCGATGCCAATATCCCAGACAGGGTCTTACACGAAT
Found at i:57859492 original size:31 final size:31
Alignment explanation
Indices: 57859450--57859840 Score: 513
Period size: 31 Copynumber: 12.7 Consensus size: 31
57859440 ATTTAATACT
* * *
57859450 CAAATC-AATTCGGTAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
57859480 CGAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
57859511 CAAATC-AATTCGGCAATGAATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
57859541 CAAATCAAATTCGACAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
57859572 TAAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
57859603 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
57859634 CAAATAAAATTCAGCAATGTATAATC-ATATA
1 CAAATCAAATTCGGCAATGTAT-ATCTATATA
* * *
57859665 CGAATAAAATTCGGCAATGTGTATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
57859696 CAAATC-GATTCGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
57859726 CAAATCAAATTCGACAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
57859757 TAAATCAATTTCGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
57859788 CAAATCAAATTCGGCAATGTATATCTTTATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
57859819 CAAATC-AATTCGGCAATGTATA
1 CAAATCAAATTCGGCAATGTATA
57859841 CAACATATAC
Statistics
Matches: 319, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
30 79 0.25
31 238 0.75
32 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCTATATA
Found at i:57859614 original size:123 final size:122
Alignment explanation
Indices: 57859450--57859840 Score: 523
Period size: 123 Copynumber: 3.2 Consensus size: 122
57859440 ATTTAATACT
* * * *
57859450 CAAATCAATTCGGTAATATATATCCATATACGAATCAAATTCGGCAATGTATATCTATATACAAA
1 CAAATCAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
* * * *
57859515 TCAATTCGGCAATGAATATCCATATACAAATCAAATTCGACAATGTATAACCATATA
66 TCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* * *
57859572 TAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATAACCATATACAA
1 CAAATC-AATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAA
* * * * *
57859637 ATAAAATTCAGCAATGTATAAT-CATATACGAATAAAATTCGGCAATGTGTATCTATATA
65 AT-CAATTCGGCAATGTAT-ATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* * * * *
57859696 CAAATCGATTCGGCAATGTATATCTATAAACAAATCAAATTCGACAATGTATATCTATAAATAAA
1 CAAATCAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
* * *
57859761 TCAATTTCGGCAATGTATATCTATAAACAAATCAAATTCGGCAATGTATATCTTTATA
66 TCAA-TTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
57859819 CAAATCAATTCGGCAATGTATA
1 CAAATCAATTCGGCAATGTATA
57859841 CAACATATAC
Statistics
Matches: 231, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
122 9 0.04
123 171 0.74
124 49 0.21
125 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (122 bp):
CAAATCAATTCGGCAATGTATATCTATATACAAATCAAATTCGGCAATGTATATCTATATACAAA
TCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
Found at i:57859793 original size:185 final size:185
Alignment explanation
Indices: 57859474--57859850 Score: 585
Period size: 185 Copynumber: 2.0 Consensus size: 185
57859464 AATATATATC
*
57859474 CATATACGAATCAAATTCGGCAATGTATATCTATATACAAATCAATTCGGCAATGAATATCCATA
1 CATATACGAATAAAATTCGGCAATGTATATCTATATACAAATCAATTCGGCAATGAATATCCATA
* * *
57859539 TACAAATCAAATTCGACAATGTATAACCATATATAAATCAAATTCGGCAATGTATATCTATATAC
66 AACAAATCAAATTCGACAATGTATAACCATAAATAAATCAAATTCGGCAATGTATATCTATAAAC
*
57859604 AAATCAAATTCGGCAATGTATAACCATATACAAATAAAATTCAGCAATGTATA-AT
131 AAATCAAATTCGGCAATGTATAACCATATACAAAT-AAATTCAGCAATGTATACAA
* * * *
57859659 CATATACGAATAAAATTCGGCAATGTGTATCTATATACAAATCGATTCGGCAATGTATATCTATA
1 CATATACGAATAAAATTCGGCAATGTATATCTATATACAAATCAATTCGGCAATGAATATCCATA
* * *
57859724 AACAAATCAAATTCGACAATGTATATCTATAAATAAATCAATTTCGGCAATGTATATCTATAAAC
66 AACAAATCAAATTCGACAATGTATAACCATAAATAAATCAAATTCGGCAATGTATATCTATAAAC
* ** * *
57859789 AAATCAAATTCGGCAATGTATATCTTTATACAAATCAATTCGGCAATGTATACAA
131 AAATCAAATTCGGCAATGTATAACCATATACAAATAAATTCAGCAATGTATACAA
57859844 CATATAC
1 CATATAC
57859851 ATTTAAATTT
Statistics
Matches: 174, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
184 15 0.09
185 159 0.91
ACGTcount: A:0.44, C:0.16, G:0.10, T:0.30
Consensus pattern (185 bp):
CATATACGAATAAAATTCGGCAATGTATATCTATATACAAATCAATTCGGCAATGAATATCCATA
AACAAATCAAATTCGACAATGTATAACCATAAATAAATCAAATTCGGCAATGTATATCTATAAAC
AAATCAAATTCGGCAATGTATAACCATATACAAATAAATTCAGCAATGTATACAA
Found at i:57869467 original size:14 final size:15
Alignment explanation
Indices: 57869445--57869521 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
57869435 CAATCAAACA
57869445 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
57869459 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
57869474 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
57869494 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
57869508 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
57869522 ACTGGAAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:57869486 original size:20 final size:20
Alignment explanation
Indices: 57869461--57869500 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57869451 AATATTTTCC
*
57869461 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
57869481 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
57869501 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:57869506 original size:34 final size:35
Alignment explanation
Indices: 57869449--57869515 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
57869439 CAAACACCAG
*
57869449 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
57869484 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
57869516 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:57869522 original size:14 final size:16
Alignment explanation
Indices: 57869498--57869529 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
57869488 CATTTTCCAG
57869498 AAATCATTTTAC-GGA
1 AAATCATTTTACTGGA
57869513 AAAT-ATTTTACTGGA
1 AAATCATTTTACTGGA
57869528 AA
1 AA
57869530 TCAAACAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34
Consensus pattern (16 bp):
AAATCATTTTACTGGA
Found at i:57869883 original size:31 final size:32
Alignment explanation
Indices: 57869843--57869903 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
57869833 TTTATTAAAA
* * *
57869843 ATTATAATTTGACTCTTTTTGAAAGGTTGATG
1 ATTATAATTTGACTATCTTTAAAAGGTTGATG
*
57869875 ATTA-AATTTGATTATCTTTAAAAGGTTGA
1 ATTATAATTTGACTATCTTTAAAAGGTTGA
57869904 AGAGCTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 21 0.84
32 4 0.16
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.46
Consensus pattern (32 bp):
ATTATAATTTGACTATCTTTAAAAGGTTGATG
Found at i:57870998 original size:31 final size:31
Alignment explanation
Indices: 57870963--57871022 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
57870953 ATAACACAAT
**
57870963 GACTTAAAT-AAAATCTTTTGAATAATTTAGC
1 GACTTAAATGAAAA-CTTTCAAATAATTTAGC
57870994 GACTTAAATGAAAACTTTCAAATAATTTA
1 GACTTAAATGAAAACTTTCAAATAATTTA
57871023 CCAAATTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (31 bp):
GACTTAAATGAAAACTTTCAAATAATTTAGC
Found at i:57880748 original size:114 final size:114
Alignment explanation
Indices: 57880421--57880740 Score: 450
Period size: 114 Copynumber: 2.8 Consensus size: 114
57880411 CTGAAAATAA
* * * * *
57880421 GCATTAGCGGC-ATTTTCCAGAAAGCGCCGC-AAAATACCTAAGTCCAACGACGCCGTTTTCCGA
1 GCATTAGCGGCGATTTTGC-GAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGA
* *
57880484 GCTTTCGGGAGATTTAGTGGCGTTTTTAAGGAAGCAG-CGCTAATGCTCAGG
65 GCTTTCGGG-GATTTAGCGGCGTTTTTGAGGAAGC-GCCGCTAATGCTCAGG
* * *
57880535 GCTTTAGTGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
1 GCATTAGCGGCGATTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
* * *
57880600 CTTTCGGGGATTTAGCAGCTTTTTTGGGGAAGCGCCGCTAATGC-CTAGG
66 CTTTCGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTC-AGG
*
57880649 GCATTAGCGGCGATTTTGCGAAAGTGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
1 GCATTAGCGGCGATTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
57880714 CTTTCGGGGATTTAGCGGCGTTTTTGA
66 CTTTCGGGGATTTAGCGGCGTTTTTGA
57880741 TAAAGCGCTA
Statistics
Matches: 182, Mismatches: 20, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
113 2 0.01
114 136 0.75
115 44 0.24
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (114 bp):
GCATTAGCGGCGATTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
CTTTCGGGGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGG
Found at i:57880782 original size:187 final size:187
Alignment explanation
Indices: 57880537--57880936 Score: 602
Period size: 187 Copynumber: 2.1 Consensus size: 187
57880527 TGCTCAGGGC
* ** **
57880537 TTTAGTGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCT
* * * * * *
57880602 TTCGGGGATTTAGCAGCTTTTTTGGGGAAGCGCCGCTAATGCCTAGGGCATTAGCGGCGATTTTG
66 TTCAGGGATTTAGCAGCGTTTTTCGGGAAGCGACGCTAATACCCAGGGCATTAGCGGCGATTTTG
* *
57880667 CGAAAGTGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
131 CGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
* * *
57880724 TTTAGCGGCGTTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAATCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCT
* * * *
57880789 TTCAGGGATTTAGCGGCGTTTTTCGGGAAGCGACGCTAATACCCAGGGCTTTAGCGGTGTTTTTG
66 TTCAGGGATTTAGCAGCGTTTTTCGGGAAGCGACGCTAATACCCAGGGCATTAGCGGCGATTTTG
*
57880854 CTAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
131 CGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
*
57880911 TTTAGCGGCGTTTTTAATAAAGCGCC
1 TTTAGCGGCGTTTTTGATAAAGCGCC
57880937 GCTAATGCTC
Statistics
Matches: 190, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
187 190 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (187 bp):
TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCT
TTCAGGGATTTAGCAGCGTTTTTCGGGAAGCGACGCTAATACCCAGGGCATTAGCGGCGATTTTG
CGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
Found at i:57880820 original size:73 final size:73
Alignment explanation
Indices: 57880652--57880811 Score: 230
Period size: 73 Copynumber: 2.2 Consensus size: 73
57880642 GCCTAGGGCA
* * * * **
57880652 TTAGCGGCGATTTTGCGAAAGTGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCTACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCTT
*
57880717 TCGGGGAT
66 TCAGGGAT
* * *
57880725 TTAGCGGCGTTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAATCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCTACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCTT
57880790 TCAGGGAT
66 TCAGGGAT
57880798 TTAGCGGCGTTTTT
1 TTAGCGGCGTTTTT
57880812 CGGGAAGCGA
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (73 bp):
TTAGCGGCGTTTTTGAGAAAGCGCTACAAAAAAACCTAAGCCCAACGAAACCGTTTTCTGAGCTT
TCAGGGAT
Found at i:57880842 original size:114 final size:114
Alignment explanation
Indices: 57880724--57881310 Score: 795
Period size: 114 Copynumber: 5.1 Consensus size: 114
57880714 CTTTCGGGGA
* * **
57880724 TTTAGCGGCGTTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAATCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAGCCGTTTTCTGAGCT
* ** * * * *
57880789 TTCAGGGATTTAGCGGCGTTTTTCGGGAAGCGACGCTAATACCCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
* * * *
57880838 TTTAGCGGTGTTTTTGCTAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCT
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAGCCGTTTTCTGAGCT
*
57880903 TTCGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCA-GGGC
* * *
57880953 TTTAGCGGCGTTTTTGCTAAAGCACCAC-AAAAAACCTAAGCCCAAC-AATGTCGTTTTCTGAGC
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAA-GCCGTTTTCTGAGC
* * *
57881016 TTTCGGGGATTTAGCGGCATTTTTAAGTAAGAGCCGCTAATGCTCAGGGC
65 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
*
57881066 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAGCCGTTTTCTGAGCT
* *
57881131 TTCGGGGATTTAGCGACGTTTTTTAAGTAAGCGCCGCTAATGCTCA-GGC
66 TTCGGGGATTTAGCGGCG-TTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
** * * * *
57881180 TTTTAGCGGCGTTTTTGGGAAGGCGCCGCAAAGAAACCTAAGCCCAAC-AAGCCGTTTTCTTAGC
1 -TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAGCCGTTTTCTGAGC
* * * *
57881244 TTTCGTGGATTTAGTGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGTGC
65 TTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
57881294 TTTAGCGGCGTTTTTGA
1 TTTAGCGGCGTTTTTGA
57881311 GGATGCGCCG
Statistics
Matches: 420, Mismatches: 46, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
113 72 0.17
114 249 0.59
115 99 0.24
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGATAAAGCGCCACAAAAAAACCTAAGCCCAACGAAGCCGTTTTCTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:57880987 original size:301 final size:302
Alignment explanation
Indices: 57880474--57881039 Score: 843
Period size: 301 Copynumber: 1.9 Consensus size: 302
57880464 CCAACGACGC
* * * *
57880474 CGTTTTCCGAGCTTTCGGGAGATTTAGTGGCGTTTTTAAGGAAGCAGCGCTAATGCTCAGGGCTT
1 CGTTTTCCGAGCTTTCAGGAGATTTAGCGGCGTTTTTAAGGAAGCAGCGCTAATACCCAGGGCTT
* *
57880539 TAGTGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
66 TAGCGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTT
* ** *
57880604 CGGGGATTTAGCAGCTTTTTTGGGGAAGCGCCGCTAATGCCTAGGGCATTAGCGGCGATTTTGCG
131 CGGGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCCTAGGGCATTAGCGGCGATTTTGCG
** * *
57880669 AAAGTGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCG
196 AAAGCACCACAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCA
57880734 TTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAAT
261 TTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAAT
* **
57880776 CGTTTTCTGAGCTTTCAGG-GATTTAGCGGCGTTTTTCGGGAAGC-GACGCTAATACCCAGGGCT
1 CGTTTTCCGAGCTTTCAGGAGATTTAGCGGCGTTTTTAAGGAAGCAG-CGCTAATACCCAGGGCT
* *
57880839 TTAGCGGTGTTTTTGCTAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
65 TTAGCGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
* * * *
57880904 TCGGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATG-CTCAGGGGCTTTAGCGGCGTTTTT
130 TCGGGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCCT-A-GGGCATTAGCGGCGATTTT
* * *
57880968 GCTAAAGCACCAC-AAAAAACCTAAGCCCAACAATGTCGTTTTCTGAGCTTTCGGGGATTTAGCG
193 GCGAAAGCACCACAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCG
57881032 GCATTTTT
258 GCATTTTT
57881040 AAGTAAGAGC
Statistics
Matches: 235, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
300 3 0.01
301 188 0.80
302 44 0.19
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (302 bp):
CGTTTTCCGAGCTTTCAGGAGATTTAGCGGCGTTTTTAAGGAAGCAGCGCTAATACCCAGGGCTT
TAGCGGCGTTTTTGCGAAAGCGCCACAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTT
CGGGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCCTAGGGCATTAGCGGCGATTTTGCG
AAAGCACCACAAAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCA
TTTTTGATAAAGCGCTACAAAAAAACCTAATCCCAACGAAAT
Found at i:57882557 original size:24 final size:24
Alignment explanation
Indices: 57882530--57882610 Score: 99
Period size: 24 Copynumber: 3.2 Consensus size: 24
57882520 AATAAACAAA
57882530 TAAATAAATAGGTAATTAATTATT
1 TAAATAAATAGGTAATTAATTATT
* *
57882554 TAAATTAATTTTTAGGTAATTAATTGTT
1 TAAA-TAA---ATAGGTAATTAATTATT
*
57882582 TAAATAGATAGGTAATTAATTATT
1 TAAATAAATAGGTAATTAATTATT
57882606 TAAAT
1 TAAAT
57882611 GAATGATACA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
24 24 0.50
25 3 0.06
27 2 0.04
28 19 0.40
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (24 bp):
TAAATAAATAGGTAATTAATTATT
Found at i:57882558 original size:28 final size:28
Alignment explanation
Indices: 57882527--57882610 Score: 86
Period size: 28 Copynumber: 3.1 Consensus size: 28
57882517 ATAAATAAAC
57882527 AAATAAATAAATAGGTAATTAATTATTT
1 AAATAAATAAATAGGTAATTAATTATTT
* *** *
57882555 AAATTAATTTTTAGGTAATTAATT-GTT
1 AAATAAATAAATAGGTAATTAATTATTT
*
57882582 ---TAAATAGATAGGTAATTAATTATTT
1 AAATAAATAAATAGGTAATTAATTATTT
57882607 AAAT
1 AAAT
57882611 GAATGATACA
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
24 17 0.40
25 2 0.05
27 2 0.05
28 21 0.50
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (28 bp):
AAATAAATAAATAGGTAATTAATTATTT
Found at i:57883347 original size:365 final size:366
Alignment explanation
Indices: 57882662--57883374 Score: 1230
Period size: 365 Copynumber: 2.0 Consensus size: 366
57882652 TTTAGAGGCG
57882662 TTTTGATAAAAAAACGCCACAAAAATTTATTGCATTTACCGATACGGAGTCGTTTCAGCTTAGGA
1 TTTTGATAAAAAAACGCCACAAAAATTTATTGCATTTACCGATACGGAGTCGTTTCAGCTTAGGA
*
57882727 AATAAGTTTTAGTTGTGGCGTTTTTCCGAAAAGCGCCGTAAATAATATTTAAACTTTGCCAAAAC
66 AATAAATTTTAGTTGTGGCGTTTTTCCGAAAAGCGCCGTAAATAATATTTAAACTTTGCCAAAAC
* *
57882792 GGCGCCGTTTCAGTTGAAGGATGGAATATTTTAGTGGCGTTTTATTATAAATGCCGCAAGGATGT
131 GGCGCCGTTTCAGTTAAAGGATGGAATATTTTAGTGGCGTTTTATTAAAAATGCCGCAAGGATGT
* * *
57882857 ATAAAATTTTCTGAAAACGGCGCCGGTTCGATAATATATTAATTGTGGCGTTTTTGGGAAAACGC
196 ATAAAATTTACTGAAAACGACGCCGGTTCGATAATATATTAATTGTGGCGTGTTTGGGAAAACGC
* *
57882922 CAGAATGTTTCCTTATATTTTTATAAAATGGCATCGTTTCTTTCTGTACTTGAAATTTTAGTGGC
261 CAGAATGTTTCCTTAAATTTTTATAAAACGGCATCGTTTCTTTCTGTACTTGAAATTTTAGTGGC
*
57882987 GTTTTTAATTAAAACGCCGCAAAAGGTAGACATTACCGGCT
326 ATTTTTAATTAAAACGCCGCAAAAGGTAGACATTACCGGCT
* * * * *
57883028 TTTTGAT-AAAAAATGCCACAAATATTTATTGCATTTACCGATACGGCGTCGTTTCGGCTTAGGG
1 TTTTGATAAAAAAACGCCACAAAAATTTATTGCATTTACCGATACGGAGTCGTTTCAGCTTAGGA
* * *
57883092 AATAAATTTTAGTTGTGGCGTTTTTCCTAAAAGCGCCGTAAATAATATTTGAACTTTGCGAAAAC
66 AATAAATTTTAGTTGTGGCGTTTTTCCGAAAAGCGCCGTAAATAATATTTAAACTTTGCCAAAAC
* * *
57883157 GGCGCCGTTTTAGTTAAAGGATGGAATCTTTTAGTGGCGTTTTATTAAAAATGCCGTAAGGATGT
131 GGCGCCGTTTCAGTTAAAGGATGGAATATTTTAGTGGCGTTTTATTAAAAATGCCGCAAGGATGT
57883222 ATAAAATTTACTGAAAACGACGCCGGTTCGATAATATATTAATTGTGGCGTGTTTGGGAAAACGC
196 ATAAAATTTACTGAAAACGACGCCGGTTCGATAATATATTAATTGTGGCGTGTTTGGGAAAACGC
*
57883287 CAGAATGTTTCCTTAAATTTTTATAAAACGGCGTCGTTTCTTTCTGTACTTGAAATTTTAGTGGC
261 CAGAATGTTTCCTTAAATTTTTATAAAACGGCATCGTTTCTTTCTGTACTTGAAATTTTAGTGGC
57883352 ATTTTTAATTAAAACGCCGCAAA
326 ATTTTTAATTAAAACGCCGCAAA
57883375 TGTCGATGCA
Statistics
Matches: 326, Mismatches: 21, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
365 319 0.98
366 7 0.02
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (366 bp):
TTTTGATAAAAAAACGCCACAAAAATTTATTGCATTTACCGATACGGAGTCGTTTCAGCTTAGGA
AATAAATTTTAGTTGTGGCGTTTTTCCGAAAAGCGCCGTAAATAATATTTAAACTTTGCCAAAAC
GGCGCCGTTTCAGTTAAAGGATGGAATATTTTAGTGGCGTTTTATTAAAAATGCCGCAAGGATGT
ATAAAATTTACTGAAAACGACGCCGGTTCGATAATATATTAATTGTGGCGTGTTTGGGAAAACGC
CAGAATGTTTCCTTAAATTTTTATAAAACGGCATCGTTTCTTTCTGTACTTGAAATTTTAGTGGC
ATTTTTAATTAAAACGCCGCAAAAGGTAGACATTACCGGCT
Found at i:57884059 original size:18 final size:18
Alignment explanation
Indices: 57884036--57884073 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
57884026 TGTTTGTTAG
57884036 TTACTTGCAGTGTTAATA
1 TTACTTGCAGTGTTAATA
57884054 TTACTTGCAGTGTTAATA
1 TTACTTGCAGTGTTAATA
57884072 TT
1 TT
57884074 TTTGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (18 bp):
TTACTTGCAGTGTTAATA
Found at i:57884896 original size:16 final size:17
Alignment explanation
Indices: 57884875--57884908 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
57884865 ATTTTACATG
57884875 ACATA-TTTTTACTAAA
1 ACATATTTTTTACTAAA
57884891 ACATATTTTTTACTAAA
1 ACATATTTTTTACTAAA
57884908 A
1 A
57884909 TTTACTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
ACATATTTTTTACTAAA
Found at i:57884926 original size:13 final size:13
Alignment explanation
Indices: 57884910--57885048 Score: 75
Period size: 13 Copynumber: 10.5 Consensus size: 13
57884900 TTACTAAAAT
* *
57884910 TTACTTTAATATA
1 TTACTTAAATAAA
57884923 TTACTTAAATAAA
1 TTACTTAAATAAA
*
57884936 TTACTTAAATACA
1 TTACTTAAATAAA
*
57884949 TTACTTACTAA-AAT
1 TTACTTA--AATAAA
** **
57884963 TTGGTTAAATTTA
1 TTACTTAAATAAA
**
57884976 TTACTTAAATATG
1 TTACTTAAATAAA
*
57884989 TTACTTAAATACA
1 TTACTTAAATAAA
*
57885002 TTACTTACTAA-AAT
1 TTACTTA--AATAAA
** **
57885016 TTGTTTAAATTTA
1 TTACTTAAATAAA
*
57885029 TTACTTAAATACA
1 TTACTTAAATAAA
57885042 TTACTTA
1 TTACTTA
57885049 CTAAAATTTA
Statistics
Matches: 93, Mismatches: 27, Indels: 12
0.70 0.20 0.09
Matches are distributed among these distances:
12 4 0.04
13 73 0.78
14 12 0.13
15 4 0.04
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (13 bp):
TTACTTAAATAAA
Found at i:57884957 original size:53 final size:52
Alignment explanation
Indices: 57884900--57885048 Score: 217
Period size: 53 Copynumber: 2.8 Consensus size: 52
57884890 AACATATTTT
* *
57884900 TTACTAAAATTTACTTTAATATATTACTTAAATAAATTACTTAAATACATTAC
1 TTACTAAAATTT-GTTTAATTTATTACTTAAATAAATTACTTAAATACATTAC
* **
57884953 TTACTAAAATTTGGTTAAATTTATTACTTAAATATGTTACTTAAATACATTAC
1 TTACTAAAATTT-GTTTAATTTATTACTTAAATAAATTACTTAAATACATTAC
*
57885006 TTACTAAAATTTGTTTAAATTTATTACTTAAATACATTACTTA
1 TTACTAAAATTTGTTT-AATTTATTACTTAAATAAATTACTTA
57885049 CTAAAATTTA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 3 0.03
53 83 0.97
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.46
Consensus pattern (52 bp):
TTACTAAAATTTGTTTAATTTATTACTTAAATAAATTACTTAAATACATTAC
Found at i:57885024 original size:40 final size:40
Alignment explanation
Indices: 57884980--57885057 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
57884970 AATTTATTAC
*
57884980 TTAAATATGTTACTTAAATACATTACTTACTAAAATTTGT
1 TTAAATATATTACTTAAATACATTACTTACTAAAATTTGT
*
57885020 TTAAATTTATTACTTAAATACATTACTTACTAAAATTT
1 TTAAATATATTACTTAAATACATTACTTACTAAAATTT
57885058 AAGTATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (40 bp):
TTAAATATATTACTTAAATACATTACTTACTAAAATTTGT
Found at i:57885280 original size:23 final size:23
Alignment explanation
Indices: 57885252--57885295 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
57885242 CTTATATGTA
*
57885252 AACTTACATAATACATTACTTTT
1 AACTTACATAATACATAACTTTT
57885275 AACTTACATAATACATAACTT
1 AACTTACATAATACATAACTT
57885296 ATAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (23 bp):
AACTTACATAATACATAACTTTT
Found at i:57887004 original size:21 final size:21
Alignment explanation
Indices: 57886931--57887041 Score: 123
Period size: 21 Copynumber: 5.3 Consensus size: 21
57886921 CTACAACTTA
* * *
57886931 AAGCAGAGACGGCAACGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
57886952 AAGTAGAGGCGGCAACGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
57886973 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
57886994 AAGCAGAGGCTACAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
57887015 AAGAAGAGGCTGCAGCGCGAG
1 AAGCAGAGGCTGCAGCGAGGG
57887036 AAGCAG
1 AAGCAG
57887042 CGAGAGAAGG
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 79 1.00
ACGTcount: A:0.35, C:0.18, G:0.43, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:57887521 original size:43 final size:43
Alignment explanation
Indices: 57887425--57887652 Score: 234
Period size: 42 Copynumber: 5.3 Consensus size: 43
57887415 AATCCCAAAA
* ** *
57887425 TTAGTGGCGTTTTTTACAAAAGCGCCGCTAAAGAACATTA-CT
1 TTAGCGGCGTTTTTTATGAAAGCGCCGCTAAAGAACATGATCT
* * *
57887467 TT-TCGTAGCGTTTGTGATGAAAGCGCCGCTAAAGAACATGATCT
1 TTAGCG--GCGTTTTTTATGAAAGCGCCGCTAAAGAACATGATCT
* ** *
57887511 ATAGCGGCGTTTTTTA-CCAAGCGCCGCTAAAGAATATGATCT
1 TTAGCGGCGTTTTTTATGAAAGCGCCGCTAAAGAACATGATCT
* *
57887553 TTAGCGGCGTTTTTCT-T-TAAGCGCTGCTAAAGAACATGATCT
1 TTAGCGGCGTTTTT-TATGAAAGCGCCGCTAAAGAACATGATCT
* * *
57887595 TTAGCGGCGTTTTTTTTCG-AAGCGCCACTAAAGAACATGACCT
1 TTAGCGGCGTTTTTTAT-GAAAGCGCCGCTAAAGAACATGATCT
57887638 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
57887653 TCTGTAAACG
Statistics
Matches: 156, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.01
42 75 0.48
43 74 0.47
44 3 0.02
45 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTATGAAAGCGCCGCTAAAGAACATGATCT
Found at i:57887600 original size:84 final size:85
Alignment explanation
Indices: 57887487--57887651 Score: 260
Period size: 85 Copynumber: 2.0 Consensus size: 85
57887477 TTTGTGATGA
* * *
57887487 AAGCGCCGCTAAAGAACATGATCTATAGCGGCG-TTTTTTACCAAGCGCCGCTAAAGAATATGAT
1 AAGCGCCGCTAAAGAACATGATCTATAGCGGCGTTTTTTTACCAAGCGCCACTAAAGAACATGAC
57887551 CTTTAGCGGCGTTTTTCTTT
66 CTTTAGCGGCGTTTTTCTTT
* * * *
57887571 AAGCGCTGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTCGAAGCGCCACTAAAGAACATGAC
1 AAGCGCCGCTAAAGAACATGATCTATAGCGGCGTTTTTTTACCAAGCGCCACTAAAGAACATGAC
57887636 CTTTAGCGGCGTTTTT
66 CTTTAGCGGCGTTTTT
57887652 TTCTGTAAAC
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
84 31 0.42
85 42 0.58
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (85 bp):
AAGCGCCGCTAAAGAACATGATCTATAGCGGCGTTTTTTTACCAAGCGCCACTAAAGAACATGAC
CTTTAGCGGCGTTTTTCTTT
Found at i:57887653 original size:43 final size:42
Alignment explanation
Indices: 57887487--57887653 Score: 246
Period size: 42 Copynumber: 4.0 Consensus size: 42
57887477 TTTGTGATGA
* **
57887487 AAGCGCCGCTAAAGAACATGATCTATAGCGGCGTTTTTTACC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTC
*
57887529 AAGCGCCGCTAAAGAATATGATCTTTAGCGGCGTTTTTCTTT-
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT-TTTC
*
57887571 AAGCGCTGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTC
* *
57887613 GAAGCGCCACTAAAGAACATGACCTTTAGCGGCGTTTTTTT
1 -AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
57887654 CTGTAAACGC
Statistics
Matches: 113, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
41 3 0.03
42 72 0.64
43 38 0.34
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTTC
Found at i:57889332 original size:17 final size:19
Alignment explanation
Indices: 57889291--57889332 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
57889281 AATCTTCAAG
*
57889291 GATATGCAATCTTAGGTAT
1 GATATGCAATCTTAGGTAA
57889310 GATATGCAATCTTA-G-AA
1 GATATGCAATCTTAGGTAA
57889327 GATATG
1 GATATG
57889333 ATTTTGTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.32
18 1 0.05
19 14 0.64
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (19 bp):
GATATGCAATCTTAGGTAA
Found at i:57892005 original size:19 final size:19
Alignment explanation
Indices: 57891981--57892025 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
57891971 TCTTTCTTTT
*
57891981 TGCATT-CATTCCATGCATC
1 TGCATTACATTCCAT-CATA
*
57892000 TGCATTACATTGCATCATA
1 TGCATTACATTCCATCATA
57892019 TGCATTA
1 TGCATTA
57892026 GATTTTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (19 bp):
TGCATTACATTCCATCATA
Found at i:57894474 original size:41 final size:41
Alignment explanation
Indices: 57894429--57894530 Score: 143
Period size: 41 Copynumber: 2.5 Consensus size: 41
57894419 GCTTAGCGCT
* *
57894429 TAGCAGGCTTATTGCCGGTGAAACACTTCAGACTAAATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAAACTAAATGTC
* * *
57894470 TAGCAGGCTTAATGCCGGTGAAATATTTCAAACTATATGTC
1 TAGCAGGCTTAATGCCGGTGAAACACTTCAAACTAAATGTC
57894511 TAGCAGGC-TAAGTGCCGGTG
1 TAGCAGGCTTAA-TGCCGGTG
57894531 TACTGAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (41 bp):
TAGCAGGCTTAATGCCGGTGAAACACTTCAAACTAAATGTC
Found at i:57899379 original size:44 final size:44
Alignment explanation
Indices: 57899307--57899716 Score: 339
Period size: 44 Copynumber: 9.2 Consensus size: 44
57899297 CAGTGAAACC
* * * *
57899307 ACAAATCTTATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * **
57899351 ACAAGTCTTATCTCCCTGAAGTTGCAGTGAAACAGACTGAAGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
57899395 AGCAAGTCTTAT-TCCCCTGAAGTTGCAGTGGGGCAGACTGAAAATGG
1 A-CAAGTCTTATCT-CCCTGAAGTTGCAGTGGAGCAGA-TTAAAGT-T
* * **
57899442 A-AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCC
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
57899485 A-ATAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTT
1 ACA-AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
57899529 ACAAGTCTTATCTCCCTGAAATTGTAGTGGAGCAGACTGAAG--
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * *
57899571 A-AAGTAACCTTATCCCCCTGAAATTGCAGTGGGGCAGACTGAAGATG
1 ACAAGT---CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* *
57899618 GCGAA-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGTT
1 AC-AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
57899662 ACAAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTT
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
57899706 ACAAGTCTTAT
1 ACAAGTCTTAT
57899717 TGAAGAAAGC
Statistics
Matches: 292, Mismatches: 58, Indels: 32
0.76 0.15 0.08
Matches are distributed among these distances:
41 4 0.01
42 1 0.00
43 4 0.01
44 186 0.64
45 90 0.31
46 3 0.01
47 1 0.00
48 1 0.00
49 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
Found at i:57899653 original size:177 final size:178
Alignment explanation
Indices: 57899305--57899716 Score: 648
Period size: 177 Copynumber: 2.3 Consensus size: 178
57899295 ATCAGTGAAA
* * * *
57899305 CCACAAATCTTATCTCCCTGAGGTTACAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGA
1 CCACAAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGA
* * * *
57899370 AGTTGCAGTGAAACAGACTGAAGAAAGCAAGTCTTATTCCCCTGAAGTTGCAGTGGGGCAGACTG
66 AATTGCAGTGAAACAGACTGAAGAAAGCAAGCCTTATCCCCCTGAAATTGCAGTGGGGCAGACTG
57899435 AAAATGGAAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
131 AAAATGGAAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
57899483 CCA-ATAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTG
1 CCACA-AATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTG
* * * *
57899547 AAATTGTAGTGGAGCAGACTGAAGAAAGTAA-CCTTATCCCCCTGAAATTGCAGTGGGGCAGACT
65 AAATTGCAGTGAAACAGACTGAAGAAAGCAAGCCTTATCCCCCTGAAATTGCAGTGGGGCAGACT
* **
57899611 GAAGATGGCGAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
130 GAAAATGGAAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
**
57899660 TTACAAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTAT
1 CCACAAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTAT
57899717 TGAAGAAAGC
Statistics
Matches: 215, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
177 130 0.60
178 85 0.40
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (178 bp):
CCACAAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATTAAAGTTACAAGTCTTATCTCCCTGA
AATTGCAGTGAAACAGACTGAAGAAAGCAAGCCTTATCCCCCTGAAATTGCAGTGGGGCAGACTG
AAAATGGAAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAG
Found at i:57900147 original size:44 final size:45
Alignment explanation
Indices: 57900093--57900217 Score: 143
Period size: 44 Copynumber: 2.9 Consensus size: 45
57900083 CACATCAAAC
57900093 CTTATCTCCCTGAAGTTGCAGTGGAA-CAGG-TTGAAAATACCAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAAGC-GGATTGAAAATACCAAT
* * ** *
57900137 CTTATCTCCCTAAAGTTGCAGT-AAAGCGGATTGAAGCTACTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAAGCGGATTGAAAATACCAAT
* *
57900181 CCTATCTCCTTGAAGTTGCAGTGG-AGCGGATT-AAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAAGCGGATTGAAAAT
57900218 GATGAATCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 7 0.10
44 60 0.90
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAAGCGGATTGAAAATACCAAT
Found at i:57900172 original size:225 final size:223
Alignment explanation
Indices: 57899723--57900207 Score: 557
Period size: 225 Copynumber: 2.2 Consensus size: 223
57899713 TTATTGAAGA
* * * * * *
57899723 AAGC-AAGTCTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGATAGCGAATCTCATTTTCCT
1 AAGCTAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTCATTTCCCT
* * * *
57899787 GAAGCTGCAGTGGAACAAATTAAAGTTATAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGA
66 GAAGCTGCAGTGGAACAAATCAAAGATATAAATCAAAGATCTTATCTCTCTGAAGTTGCAATAGA
* * * * * *
57899852 GTAGATCATGACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCTAATAATCCTAT
131 GCAGATCATCACAAACCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGATAACAATCCTAT
** *
57899917 CTACTAGAAGTTGCAGTGGAGTGAATTG
196 CTACTAGAAGTTGCAGTAAAGCGAATTG
** *
57899945 AAG-TGAAGTCTTATCTCCTTGAAGTTATAGTGGAGCAAACTGAAGATAGCAAATCTCGTTTCCC
1 AAGCT-AAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTCATTTCCC
* * * *
57900009 TGAAGATTGCAGTGGAATAGATCAAAGATATAAATCATAAGATCTTATCTTTCTGAAGTTGCAAT
65 TGAAG-CTGCAGTGGAACAAATCAAAGATATAAATCA-AAGATCTTATCTCTCTGAAGTTGCAAT
* * *
57900074 AGAGCAGATCA-CATCAAACCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAA-ATACCAAT
128 AGAGCAGATCATCA-CAAACCTTATCTCCCTGAAGTTACAGTGGAACAGATT-AAAGATAACAAT
* * *
57900137 CTTATCTCCCTA-AAGTTGCAGTAAAGCGGATTG
191 CCTATCT-ACTAGAAGTTGCAGTAAAGCGAATTG
* *
57900170 AAGCTACTAATCCTATCTCCTTGAAGTTGCAGTGGAGC
1 AAGCTA--AGTCTTATCTCCTTGAAGTTGCAGTGGAGC
57900208 GGATTAAAAT
Statistics
Matches: 217, Mismatches: 36, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
222 3 0.01
223 55 0.25
224 27 0.12
225 99 0.46
226 7 0.03
227 26 0.12
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (223 bp):
AAGCTAAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTCATTTCCCT
GAAGCTGCAGTGGAACAAATCAAAGATATAAATCAAAGATCTTATCTCTCTGAAGTTGCAATAGA
GCAGATCATCACAAACCTTATCTCCCTGAAGTTACAGTGGAACAGATTAAAGATAACAATCCTAT
CTACTAGAAGTTGCAGTAAAGCGAATTG
Found at i:57900385 original size:89 final size:88
Alignment explanation
Indices: 57900289--57900566 Score: 342
Period size: 89 Copynumber: 3.1 Consensus size: 88
57900279 CTCCTTAAAG
57900289 TTGCAGCGGAGCAGACTAACGATAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAA
1 TTGCAGCGGAGCAGACTAA-GATAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAA
57900354 GACACCAGCCTTACCTCCTTGAGT
65 GACACCAGCCTTACCTCCTTGAGT
* * *
57900378 TTGCAGCGGAGCAGACTGAAGATAGTAGATCTTCTCTTCCTATATTGGCAACGAAACAGATCGAA
1 TTGCAGCGGAGCAGACT-AAGATAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAA
* *
57900443 GACACCAGTCTTACCTCCCTGAGT
65 GACACCAGCCTTACCTCCTTGAGT
* * * * ** * * * * *
57900467 TTGCAACGGAACAGACTAAAAACAACAAATCTTGTCTTCTTGTACTGGCAGTGAAGCAGATCGAA
1 TTGCAGCGGAGCAGACT-AAGATAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAA
* *
57900532 AACACCAGCCTTGCCT-CTCTGAGT
65 GACACCAGCCTTACCTCCT-TGAGT
*
57900556 TTGCAGTGGAG
1 TTGCAGCGGAG
57900567 TATGTAATAT
Statistics
Matches: 160, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
88 1 0.01
89 157 0.98
90 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (88 bp):
TTGCAGCGGAGCAGACTAAGATAGTAGATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAAG
ACACCAGCCTTACCTCCTTGAGT
Found at i:57900480 original size:44 final size:44
Alignment explanation
Indices: 57900345--57900481 Score: 120
Period size: 44 Copynumber: 3.1 Consensus size: 44
57900335 GGCAGCGAAG
* * * *
57900345 CAGATCGAAGACACCAGCCTTACCTCCTTGAGTTTGCAGCGGAG
1 CAGATCGAAGACACCAGTCTTACCTCCCTGAGTTTGCAACGGAA
* ** * *
57900389 CAGA-CTGAAGATAGTAGATCTT-CTCTTCCT-A-TATTGGCAACGAAA
1 CAGATC-GAAGACACCAG-TCTTAC-CTCCCTGAGT-TT-GCAACGGAA
57900434 CAGATCGAAGACACCAGTCTTACCTCCCTGAGTTTGCAACGGAA
1 CAGATCGAAGACACCAGTCTTACCTCCCTGAGTTTGCAACGGAA
57900478 CAGA
1 CAGA
57900482 CTAAAAACAA
Statistics
Matches: 70, Mismatches: 14, Indels: 18
0.69 0.14 0.18
Matches are distributed among these distances:
43 2 0.03
44 37 0.53
45 29 0.41
46 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (44 bp):
CAGATCGAAGACACCAGTCTTACCTCCCTGAGTTTGCAACGGAA
Found at i:57903073 original size:131 final size:132
Alignment explanation
Indices: 57902782--57903165 Score: 592
Period size: 131 Copynumber: 2.9 Consensus size: 132
57902772 GGGTGTTACA
57902782 GAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAA
1 GAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAA
* *
57902847 TCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCTTGAGCAGCAA
66 TCTTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCAA
57902912 TG
131 TG
* * * * * *
57902914 GAGTAGGTTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAATGGAGTAGATCGAAGACGACAAA
1 GAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAA
* * * *
57902979 TCTTATCTTCCCGAGATAGTA-GGAAGCAGATTTAAGCCACCAGTTCTATCTCCCTGAGCAGTAG
66 TCTTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCAA
57903043 TG
131 TG
* *
57903045 GAGTAGGTTGAAGATTGTATATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAG
1 GAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAA
* * *
57903110 TCTTATCTTCCCGAGGTAGTAGGGAAACAGATTTAAGCTACTAG-CCTTATCTCCCT
66 TCTTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCC-TATCTCCCT
57903166 AAAGTTGCAG
Statistics
Matches: 225, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
131 119 0.53
132 106 0.47
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (132 bp):
GAGTAGGTTGAAGATTGTAGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCGAA
TCTTATCTTCCCGAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCAA
TG
Done.