Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 210 of 213
Found at i:62999631 original size:63 final size:63
Alignment explanation
Indices: 62999553--62999708 Score: 294
Period size: 63 Copynumber: 2.5 Consensus size: 63
62999543 GATAAGTTAA
*
62999553 TGTAAAAGCAGATTCCTCCTTATTTGCTTATGTCCTTTATGTATGAGTCATGTCCTTTATGTT
1 TGTAAAAGCAGATTCCTCCTTATCTGCTTATGTCCTTTATGTATGAGTCATGTCCTTTATGTT
*
62999616 TGTAAAAGCAGATTCCTCCTTATCTACTTATGTCCTTTATGTATGAGTCATGTCCTTTATGTT
1 TGTAAAAGCAGATTCCTCCTTATCTGCTTATGTCCTTTATGTATGAGTCATGTCCTTTATGTT
62999679 TGTAAAAGCAGATTCCTCCTTATCTGCTTA
1 TGTAAAAGCAGATTCCTCCTTATCTGCTTA
62999709 CTTATACTTT
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 90 1.00
ACGTcount: A:0.22, C:0.19, G:0.15, T:0.44
Consensus pattern (63 bp):
TGTAAAAGCAGATTCCTCCTTATCTGCTTATGTCCTTTATGTATGAGTCATGTCCTTTATGTT
Found at i:63001488 original size:5 final size:5
Alignment explanation
Indices: 63001478--63001503 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
63001468 TTGCTTCACA
63001478 AAATT AAATT AAATT AAATT AAATT A
1 AAATT AAATT AAATT AAATT AAATT A
63001504 CATCACTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:63002404 original size:19 final size:20
Alignment explanation
Indices: 63002380--63002417 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
63002370 AAATAAATAT
63002380 TAAAAAA-TTATTTTAAAAA
1 TAAAAAATTTATTTTAAAAA
63002399 TAAAAAATTTATTTTAAAA
1 TAAAAAATTTATTTTAAAA
63002418 GTATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAAAATTTATTTTAAAAA
Found at i:63002447 original size:14 final size:13
Alignment explanation
Indices: 63002425--63002458 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
63002415 AAAGTATTTT
*
63002425 AAAATTAAAAATTA
1 AAAAATAAAAA-TA
63002439 AAAAATAAAAATA
1 AAAAATAAAAATA
63002452 AAAAATA
1 AAAAATA
63002459 TATATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:63004107 original size:4 final size:4
Alignment explanation
Indices: 63004098--63004123 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
63004088 TAAGGTTGCA
63004098 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
63004124 ATAGGTGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:63021903 original size:21 final size:22
Alignment explanation
Indices: 63021874--63021920 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
63021864 CAGAAGGAGT
*
63021874 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
63021896 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
63021917 GAGT
1 GAGT
63021921 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:63037614 original size:768 final size:767
Alignment explanation
Indices: 63036164--63037635 Score: 2462
Period size: 768 Copynumber: 1.9 Consensus size: 767
63036154 GAAAGAGATT
63036164 ATCACGATAAAAAAACCTAAAACAACATTAAAATCCTAAAAAATATTCTTAATCAATCCTAAGAA
1 ATCACGATAAAAAAACCTAAAACAACATTAAAATCCTAAAAAATATTCTTAATCAATCCTAAGAA
*
63036229 TCCTTTCTTTCGAGCATTTGCTTGAACCAATATGCCGAGAGCTTGGGATATCTTTTGAGATCATT
66 TCCTTTCTTTCGAGCATTTGCTTGAACCAATATGCCGAGAGCTTGGGATATCTCTTGAGATCATT
63036294 GCAATCAACATACACCAGACCAAATCTTGAGGTATATCCTAATAACCATTCAAAATTGTCTAGAA
131 GCAATCAACATACACCAGACCAAATCTTGAGGTATATCCTAATAACCATTCAAAATTGTCTAGAA
* **
63036359 TTGACCAAGCAAAGTAGCCGGTAACATTAGCTCCATCATTTATAGCTCTTTTCAATTCCTTCAAA
196 TTGACCAAGCAAAGTAGCCAGTAACATTAGCTCCATCATCCATAGCTCTTTTCAATTCCTTCAAA
* *
63036424 TAGCTTCTATAAAAGTTTACTCTATTAATATCATATAGCGATTCAGGAAATGTGAGATTACCGAG
261 TAGCTTCTATAAAAGCTTACTCTATTAATATCATATAACGATTCAGGAAATGTGAGATTACCGAG
* * ** * *
63036489 ATCATCCATTCCTGTCGTTAATTAAGAAAAGTATATAGTAATTAGATACACTTGCTTTAAAGAAA
326 ATCATCCATTCCTGTCATTAATTAACAAAACAAAATAATAATTAGATACACTTGCTTTAAAGAAA
* * * **
63036554 TAAAAGATGGACAAACAAAAAAATTATATTAGAGTTGAAATATTTGTTGTCTCACCATTTTTGGA
391 TAAAAAATGGACAAACAAAAAAATTATATTAGAATTGAAATATTTGTGGTCTCACCATTTTCAGA
63036619 GAGAAATATATTAGGGCTTCCATAACGTTTTTTTACATACGTTACTACTTTGTACATACCCCATG
456 GAGAAATATATTAGGGCTTCCATAACGTTTTTTTACATACGTTACTACTTTGTACATACCCCATG
* * *
63036684 GAACTTCATATAACCATTCGTAGTAGGCCTGCATTTCTTGTAAATTAGACACTTGAGCTAGAATT
521 GAACTTCATATAACCATTCGGAATAGGCCTGCATTTCTTGTAAATTAGACACTTGAGCTAAAATT
63036749 GACATGATTAAGAATATTAAAGATTGAAAATGCCATCAAACTTTCATTTTTGAGATAAACATCTT
586 GACATGATTAAGAATATTAAAGATTGAAAATGCCATCAAACTTTCATTTTTGAGATAAACATCTT
63036814 AAATTTGCCACCAAAGTCAAAATTGAGCATAATACTTTTTATATATTAATTTATTACAAAATCTC
651 AAATTTGCCACCAAAGTCAAAATTGAGCATAATACTTTTTATATATTAATTTATTACAAAATCTC
63036879 TAAATGATAAATCTAGAAAGAGATTATTCTAAATAGAAAAGTTAAAACCAAA
716 TAAATGATAAATCTAGAAAGAGATTATTCTAAATAGAAAAGTTAAAACCAAA
* * ** * * *
63036931 ATCACGATTAAAAAAATCTAAAACGACATTAAGGTCCTAAAAAGTATTTTTAATCAATCCTAGGA
1 ATCACGA-TAAAAAAACCTAAAACAACATTAAAATCCTAAAAAATATTCTTAATCAATCCTAAGA
* *
63036996 ATTCTTTCTTTCGAGCATTTGCTTGAACCAATATGCCGAGAGTTTGGGATATCTCTTGAGATCAT
65 ATCCTTTCTTTCGAGCATTTGCTTGAACCAATATGCCGAGAGCTTGGGATATCTCTTGAGATCAT
** *
63037061 TGTGATCAACATATACCAGACCAAATCTTGAGGTATATCCTAATAACCATTCAAAATTGTCTAGA
130 TGCAATCAACATACACCAGACCAAATCTTGAGGTATATCCTAATAACCATTCAAAATTGTCTAGA
*
63037126 ATTGACCAAGCAAAGTAGCCAGTGACATTAGCTCCATCATCCATAGCTCTTTTCAATTCCTTCAA
195 ATTGACCAAGCAAAGTAGCCAGTAACATTAGCTCCATCATCCATAGCTCTTTTCAATTCCTTCAA
* *
63037191 GTAGCTTCTATAAAAGCTTACTCTATTAATATCATATAACGATTCAGGAAATGTGAGATTGCC-A
260 ATAGCTTCTATAAAAGCTTACTCTATTAATATCATATAACGATTCAGGAAATGTGAGATTACCGA
*
63037255 GGATCATCCATTCCTGTCATTAATTAACAACACAAAATAATAATTAGATACACTTGCTTTAAAGA
325 -GATCATCCATTCCTGTCATTAATTAACAAAACAAAATAATAATTAGATACACTTGCTTTAAAGA
*
63037320 AATAAAAAATGGACAAACAAAAAATTTATATTAGAATTGAAATATTTGTGGTCTCACCATTTTCA
389 AATAAAAAATGGACAAACAAAAAAATTATATTAGAATTGAAATATTTGTGGTCTCACCATTTTCA
* * * *
63037385 GAGAGAATTATATTAGGGCTTCCATAATGTTTTTTTACATATGTTACTGCTTTGTACATACCCCA
454 GAGAGAAATATATTAGGGCTTCCATAACGTTTTTTTACATACGTTACTACTTTGTACATACCCCA
* *
63037450 TGGAACTTCATATAACCATTCGGAATGGGCCTGCATTTCTTGTAAATTAGGCACTTGAGCTAAAA
519 TGGAACTTCATATAACCATTCGGAATAGGCCTGCATTTCTTGTAAATTAGACACTTGAGCTAAAA
* * ** *
63037515 TTGACATGATTAAGAATATTATAGATTGAAAATGCCGTCAATTTTTCA-TTTTGAAGATAATCAT
584 TTGACATGATTAAGAATATTAAAGATTGAAAATGCCATCAAACTTTCATTTTTG-AGATAAACAT
*
63037579 CTTAAATTTTCCACCAAAGTCAAAATTGAGCATAATACTTTTTATATATTAATTTAT
648 CTTAAATTTGCCACCAAAGTCAAAATTGAGCATAATACTTTTTATATATTAATTTAT
63037636 GTTTTGTAAA
Statistics
Matches: 653, Mismatches: 49, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
767 13 0.02
768 640 0.98
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (767 bp):
ATCACGATAAAAAAACCTAAAACAACATTAAAATCCTAAAAAATATTCTTAATCAATCCTAAGAA
TCCTTTCTTTCGAGCATTTGCTTGAACCAATATGCCGAGAGCTTGGGATATCTCTTGAGATCATT
GCAATCAACATACACCAGACCAAATCTTGAGGTATATCCTAATAACCATTCAAAATTGTCTAGAA
TTGACCAAGCAAAGTAGCCAGTAACATTAGCTCCATCATCCATAGCTCTTTTCAATTCCTTCAAA
TAGCTTCTATAAAAGCTTACTCTATTAATATCATATAACGATTCAGGAAATGTGAGATTACCGAG
ATCATCCATTCCTGTCATTAATTAACAAAACAAAATAATAATTAGATACACTTGCTTTAAAGAAA
TAAAAAATGGACAAACAAAAAAATTATATTAGAATTGAAATATTTGTGGTCTCACCATTTTCAGA
GAGAAATATATTAGGGCTTCCATAACGTTTTTTTACATACGTTACTACTTTGTACATACCCCATG
GAACTTCATATAACCATTCGGAATAGGCCTGCATTTCTTGTAAATTAGACACTTGAGCTAAAATT
GACATGATTAAGAATATTAAAGATTGAAAATGCCATCAAACTTTCATTTTTGAGATAAACATCTT
AAATTTGCCACCAAAGTCAAAATTGAGCATAATACTTTTTATATATTAATTTATTACAAAATCTC
TAAATGATAAATCTAGAAAGAGATTATTCTAAATAGAAAAGTTAAAACCAAA
Found at i:63045494 original size:18 final size:17
Alignment explanation
Indices: 63045467--63045500 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63045457 AATATTTATT
*
63045467 TATAATAATTAATAATTG
1 TATAAGAATTAA-AATTG
63045485 TATAAGAATTAAAATT
1 TATAAGAATTAAAATT
63045501 AATAGTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
TATAAGAATTAAAATTG
Found at i:63046449 original size:23 final size:23
Alignment explanation
Indices: 63046423--63046471 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
63046413 TATAGACATC
*
63046423 AATGCATAGCAGATACAGATTCA
1 AATGCATAACAGATACAGATTCA
* *
63046446 AATGCATAATAGATATAGATTCA
1 AATGCATAACAGATACAGATTCA
63046469 AAT
1 AAT
63046472 CCTACCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (23 bp):
AATGCATAACAGATACAGATTCA
Found at i:63049528 original size:58 final size:58
Alignment explanation
Indices: 63049437--63049552 Score: 162
Period size: 58 Copynumber: 2.0 Consensus size: 58
63049427 TATTCTGTAA
* * * *
63049437 AATTGAAATCGGTGAAGAGAATTATCACCATAAACTTGAGACCTAAAACTTCTAGAGT
1 AATTGAAATCGATGAAGAGAATTATCACAATAAACTTGAGAACTAAAACTGCTAGAGT
* *
63049495 AATTGGAATCGATGAAGA-ATATTATCACAATAAACTTGAGAACTAAATCTGCTAGAGT
1 AATTGAAATCGATGAAGAGA-ATTATCACAATAAACTTGAGAACTAAAACTGCTAGAGT
63049553 TTTTAGTATT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 1 0.02
58 50 0.98
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (58 bp):
AATTGAAATCGATGAAGAGAATTATCACAATAAACTTGAGAACTAAAACTGCTAGAGT
Found at i:63053059 original size:22 final size:22
Alignment explanation
Indices: 63053029--63053071 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
63053019 ACACCAAAAC
*
63053029 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
63053051 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
63053072 AACGCCGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:63053362 original size:43 final size:42
Alignment explanation
Indices: 63053143--63053476 Score: 213
Period size: 43 Copynumber: 7.8 Consensus size: 42
63053133 GCGCCGCTAA
* ** * *
63053143 CTTTAGCGGCGTTTTAGAAAAAATGCCGCTAAAGACCCTGAT
1 CTTTAGCGGCGCTTTACCACAAACGCCGCTAAAGACCCTGAT
* * * *** *
63053185 CTTTAGCGGCGCATCTT-GCACAAACGCTGCTGAAGACTAAGAC
1 CTTTAGCGGCGC-T-TTACCACAAACGCCGCTAAAGACCCTGAT
**** * * *
63053228 CTTTAGCGGCGCTTTAGTGGAAGCGCCGCTAAAGATCCTTAT
1 CTTTAGCGGCGCTTTACCACAAACGCCGCTAAAGACCCTGAT
* * * **** *
63053270 CTTTAGCGGCGCTTCTCCCAAAAACGCCACTAAAGATTAGGGT
1 CTTTAGCGGCGCTT-TACCACAAACGCCGCTAAAGACCCTGAT
* * *
63053313 CATTAGCGGCGCTTTCCCTTCAAACGCCGC-AATAGACCCTGAT
1 CTTTAGCGGCGCTTTACC-ACAAACGCCGCTAA-AGACCCTGAT
* * **
63053356 CTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTATGAT
1 CTTTAGCGGCGCTTT-ACCACAAACGCCGCTAAAGACCCTGAT
* * * *
63053399 CTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGCCCCTTAT
1 CTTTAGCGGCGC-TTTACCACAAACGCCGCTAAAGACCCTGAT
* * *
63053442 CTTTAGCGGCGCTTTGGCCAAAAACGCCACTAAAG
1 CTTTAGCGGCGCTTT-ACCACAAACGCCGCTAAAG
63053477 GCCAACACCT
Statistics
Matches: 220, Mismatches: 62, Indels: 19
0.73 0.21 0.06
Matches are distributed among these distances:
41 2 0.01
42 49 0.22
43 160 0.73
44 9 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTACCACAAACGCCGCTAAAGACCCTGAT
Found at i:63053489 original size:86 final size:87
Alignment explanation
Indices: 63053167--63053501 Score: 308
Period size: 86 Copynumber: 3.9 Consensus size: 87
63053157 TAGAAAAAAT
* * ** * *
63053167 GCCGCTAAAGACCCTGATCTTTAGCGGCGCATCTTG--CACAAACGCTGCTGAAGACTAAGACCT
1 GCCGCTAAAGACCCTTATCTTTAGCGGCGC-T-TTGACCAAAAACGCCACTAAAGACTAAGATCT
* ** ** *
63053230 TTAGCGGCGC--TTTAGTGGAAGC
64 TTAGTGGCGCTTTTTCCTACAAAC
* * * * * *
63053252 GCCGCTAAAGATCCTTATCTTTAGCGGCGCTTCT-CCCAAAAACGCCACTAAAGATTAGGGTCAT
1 GCCGCTAAAGACCCTTATCTTTAGCGGCGCTT-TGACCAAAAACGCCACTAAAGACTAAGATCTT
* * *
63053316 TAGCGGCGC-TTTCCCTTCAAAC
65 TAGTGGCGCTTTTTCCTACAAAC
* *
63053338 GCCGC-AATAGACCCTGATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTATGATCTT
1 GCCGCTAA-AGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTAAGATCTT
63053402 TAGTGGCGCTTTTTCC-ACAAAC
65 TAGTGGCGCTTTTTCCTACAAAC
* * * * * *
63053424 GCCGCTAAAGCCCCTTATCTTTAGCGGCGCTTTGGCCAAAAACGCCACTAAAGGCCAACACCTTT
1 GCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTAAGATCTTT
*
63053489 AGTGGCGTTTTTT
66 AGTGGCGCTTTTT
63053502 TTAAAAAACG
Statistics
Matches: 206, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
83 1 0.00
84 2 0.01
85 59 0.29
86 137 0.67
87 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (87 bp):
GCCGCTAAAGACCCTTATCTTTAGCGGCGCTTTGACCAAAAACGCCACTAAAGACTAAGATCTTT
AGTGGCGCTTTTTCCTACAAAC
Found at i:63053853 original size:21 final size:21
Alignment explanation
Indices: 63053827--63053939 Score: 127
Period size: 21 Copynumber: 5.4 Consensus size: 21
63053817 TTTGACGTTG
63053827 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
63053848 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
63053869 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * * *
63053890 CTGTACTTCTCTCACTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
63053911 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
63053932 ATCTGCTT
1 CTCTGCTT
63053940 TAAGCTGCTG
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 78 1.00
ACGTcount: A:0.05, C:0.43, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:63053987 original size:66 final size:66
Alignment explanation
Indices: 63053910--63054056 Score: 199
Period size: 66 Copynumber: 2.2 Consensus size: 66
63053900 CTCACTGCCG
* *
63053910 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTT
63053973 GAA
64 GAA
* * * *
63053976 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
63054041 A
66 A
*
63054042 CCTCAACTTCTCTCG
1 CCTCAGCTTCTCTCG
63054057 ATGTTGTCTC
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
65 1 0.01
66 67 0.93
67 4 0.06
ACGTcount: A:0.13, C:0.29, G:0.18, T:0.40
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGA
A
Found at i:63054072 original size:66 final size:66
Alignment explanation
Indices: 63053916--63054079 Score: 181
Period size: 66 Copynumber: 2.5 Consensus size: 66
63053906 GCCGCCTCTG
* * * * *
63053916 CTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATACTTTCGTTGAACCTC
1 CTTCTCTCGATGCTGCATCCGCTTTAAGTTG-TAGCTGGAGTTCTTCATACTTTCGTTGAACCTC
*
63053980 AG
65 AA
* * * *
63053982 CTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTC
1 CTTCTCTCGATGCTGCATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCGTTGAACCTC
63054046 AA
65 AA
*
63054048 CTTCTCTCGATGTTGTC-TCCGCTTTAAGTTGT
1 CTTCTCTCGATGCTG-CATCCGCTTTAAGTTGT
63054080 GTAATTTGCT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
65 1 0.01
66 79 0.93
67 5 0.06
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.41
Consensus pattern (66 bp):
CTTCTCTCGATGCTGCATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTCA
A
Found at i:63059535 original size:16 final size:16
Alignment explanation
Indices: 63059514--63059557 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
63059504 ACTAAGCTAC
63059514 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
63059530 GTAAGTTATTTATTAT
1 GTAAGTTATGTATTAT
* *
63059546 GAAAATTATGTA
1 GTAAGTTATGTA
63059558 AGTTGTGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:63059576 original size:25 final size:25
Alignment explanation
Indices: 63059525--63059597 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 25
63059515 TAAGTTATGT
*
63059525 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
63059550 ATTATGTAAGTTGTGTATTAGTCAAA
1 ATTATGTAAGTTATGTATTA-TGAAA
63059576 TTATGCTATGTAAGTTATGTAT
1 --AT--TATGTAAGTTATGTAT
63059598 GTCGTATAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
25 18 0.46
26 4 0.10
28 2 0.05
30 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:63059594 original size:9 final size:9
Alignment explanation
Indices: 63059582--63059665 Score: 68
Period size: 9 Copynumber: 9.8 Consensus size: 9
63059572 CAAATTATGC
63059582 TATGTAAGT
1 TATGTAAGT
*
63059591 TATGTATGT
1 TATGTAAGT
** *
63059600 CGTATAAGT
1 TATGTAAGT
63059609 TATGTAAG-
1 TATGTAAGT
63059617 T-TGTAAGT
1 TATGTAAGT
63059625 TATGTAAGT
1 TATGTAAGT
*
63059634 TAT-TTA-T
1 TATGTAAGT
* *
63059641 TATGAAAAT
1 TATGTAAGT
*
63059650 TAAGTAAGT
1 TATGTAAGT
63059659 TATGTAA
1 TATGTAA
63059666 TTTACGAATA
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
7 10 0.18
8 5 0.09
9 41 0.73
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.44
Consensus pattern (9 bp):
TATGTAAGT
Found at i:63059625 original size:16 final size:16
Alignment explanation
Indices: 63059584--63059634 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
63059574 AATTATGCTA
*
63059584 TGTAAGTTATGTATGT
1 TGTAAGTTATGTAAGT
*
63059600 CGTATAAGTTATGTAAGT
1 --TGTAAGTTATGTAAGT
63059618 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
63059634 T
1 T
63059635 ATTTATTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 16 0.53
18 14 0.47
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:63059691 original size:34 final size:34
Alignment explanation
Indices: 63059653--63059843 Score: 118
Period size: 34 Copynumber: 5.4 Consensus size: 34
63059643 TGAAAATTAA
*
63059653 GTAAGTTATGTAATTTACGAATAATTAAAAAATT
1 GTAAGTTATGTAATTTATGAATAATTAAAAAATT
* * * *
63059687 GTAAGTTATGTAAGTTGTAAATTATGTATAATATTAATT
1 GTAAGTTATGTAATTTATGAATAAT-TA-AA-A--AATT
* * **
63059726 AACTAAGTTATGTAATTTATGTATAATATTAATTAATT
1 --GTAAGTTATGTAATTTATGAAT-A-ATTAAAAAATT
* * **
63059764 AATTAAGTTATGTAATTTATGTAT-ATTAACTAA-T
1 --GTAAGTTATGTAATTTATGAATAATTAAAAAATT
* * *
63059798 -TAAGTTAGGTAATTTATGAATAATCAAAAAAAT
1 GTAAGTTATGTAATTTATGAATAATTAAAAAATT
63059831 GTAAGTTATGTAA
1 GTAAGTTATGTAA
63059844 GTTGTAAGTT
Statistics
Matches: 124, Mismatches: 21, Indels: 24
0.73 0.12 0.14
Matches are distributed among these distances:
31 19 0.15
32 6 0.05
33 1 0.01
34 32 0.26
35 10 0.08
36 2 0.02
37 1 0.01
38 27 0.22
39 4 0.03
41 18 0.15
42 2 0.02
43 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.42
Consensus pattern (34 bp):
GTAAGTTATGTAATTTATGAATAATTAAAAAATT
Found at i:63059843 original size:9 final size:9
Alignment explanation
Indices: 63059829--63059961 Score: 58
Period size: 9 Copynumber: 15.6 Consensus size: 9
63059819 AATCAAAAAA
63059829 ATGTAAGTT
1 ATGTAAGTT
63059838 ATGTAAG-T
1 ATGTAAGTT
63059846 -TGTAAG-T
1 ATGTAAGTT
63059853 -TGTAAGTT
1 ATGTAAGTT
*
63059861 ATGTATA-AT
1 ATGTA-AGTT
63059870 AT-TAA-TT
1 ATGTAAGTT
**
63059877 AACTAAGTT
1 ATGTAAGTT
*
63059886 ATGTAATTT
1 ATGTAAGTT
*
63059895 ATGTATCATATT
1 ATGTA--A-GTT
63059907 AATGTAAGTT
1 -ATGTAAGTT
*
63059917 ATGTAACTT
1 ATGTAAGTT
63059926 ATGT-A--T
1 ATGTAAGTT
63059932 AT-TAA-TT
1 ATGTAAGTT
63059939 AAT-TAAGTT
1 -ATGTAAGTT
*
63059948 ATGTAATTT
1 ATGTAAGTT
63059957 ATGTA
1 ATGTA
63059962 TAATATTAAT
Statistics
Matches: 100, Mismatches: 10, Indels: 28
0.72 0.07 0.20
Matches are distributed among these distances:
5 1 0.01
6 4 0.04
7 17 0.17
8 15 0.15
9 51 0.51
10 3 0.03
11 2 0.02
12 2 0.02
13 5 0.05
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.47
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:63059863 original size:79 final size:78
Alignment explanation
Indices: 63059774--63059922 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 78
63059764 AATTAAGTTA
* *
63059774 TGTAATTTATG-T-ATATTAACTAATTAAGTTAGGTAATTTATGAATAATCAAAAAAATGTAAGT
1 TGTAAGTTATGATAATATTAACTAACTAAGTTAGGTAATTTATG--T-ATCAAAAAAATGTAAGT
63059837 TATGTAAGTTGTAAGT
63 TATGTAAGTTGTAAGT
* * * **
63059853 TGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATCATATTAATGTAAGTTA
1 TGTAAGTTATG-ATAATATTAACTAACTAAGTTAGGTAATTTATGTATCAAAAAAATGTAAGTTA
63059918 TGTAA
65 TGTAA
63059923 CTTATGTATA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 31 0.52
80 1 0.02
81 1 0.02
82 27 0.45
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (78 bp):
TGTAAGTTATGATAATATTAACTAACTAAGTTAGGTAATTTATGTATCAAAAAAATGTAAGTTAT
GTAAGTTGTAAGT
Found at i:63059897 original size:34 final size:34
Alignment explanation
Indices: 63059853--63060212 Score: 263
Period size: 34 Copynumber: 11.2 Consensus size: 34
63059843 AGTTGTAAGT
* *
63059853 TGTAAGTTATGTATAATATTAATTAACTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
63059887 TGTAATTTATGTATCATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
63059918 TGTAACTTATG--T-ATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
63059949 TGTAATTTATGTATAATATTAA-T--GTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* *
63059980 TGT-A--TA---ATAACA-TAA--AATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
63060005 TGTAATTTATGTATAATATTAATTAATTAAGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
*
63060039 TGTAATTTATGTATAATATTAATTAATTAATTAAGTTA
1 TGTAATTTATGTAT-A-A-T-ATTAATTAAGTAAGTTA
* *
63060077 TGTAATTTATGTATTATATTAA-T--GTATGTTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
* * **
63060108 TGTAATTTATGAATAAT-TAAAAAAATGTAAGTTA
1 TGTAATTTATGTATAATATTAATTAA-GTAAGTTA
* * *
63060142 TGTAAGTTGTAAGT-T-ATA--AGTTATGTAAG-T-
1 TGTAA-TT-TATGTATAATATTAATTAAGTAAGTTA
* * * *
63060172 TGTCAGTTATGTATAATATTAATTAACTAAATTA
1 TGTAATTTATGTATAATATTAATTAAGTAAGTTA
63060206 TGTAATT
1 TGTAATT
63060213 AGAGATGGGT
Statistics
Matches: 259, Mismatches: 33, Indels: 68
0.72 0.09 0.19
Matches are distributed among these distances:
24 3 0.01
25 15 0.06
26 1 0.00
28 15 0.06
29 4 0.02
30 11 0.04
31 71 0.27
32 15 0.06
33 7 0.03
34 75 0.29
35 5 0.02
36 5 0.02
37 1 0.00
38 31 0.12
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (34 bp):
TGTAATTTATGTATAATATTAATTAAGTAAGTTA
Found at i:63059985 original size:22 final size:22
Alignment explanation
Indices: 63059886--63059988 Score: 76
Period size: 22 Copynumber: 4.9 Consensus size: 22
63059876 TAACTAAGTT
* *
63059886 ATGTAATTTATGTATCATATTA
1 ATGTAAGTTATGTATAATATTA
*
63059908 ATGTAAGTTATGTA-ACTTATGTA
1 ATGTAAGTTATGTATA-ATAT-TA
* *
63059931 TAT-TAA-TTA-AT-TAA-GTT-
1 -ATGTAAGTTATGTATAATATTA
*
63059948 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
63059970 ATGTAAGTTATGTATAATA
1 ATGTAAGTTATGTATAATA
63059989 ACATAAAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 20
0.68 0.10 0.22
Matches are distributed among these distances:
16 2 0.03
17 3 0.05
18 4 0.06
19 2 0.03
20 3 0.05
21 4 0.06
22 37 0.60
23 5 0.08
24 2 0.03
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:63060016 original size:9 final size:9
Alignment explanation
Indices: 63060002--63060118 Score: 57
Period size: 9 Copynumber: 12.6 Consensus size: 9
63059992 TAAAATTAAG
63060002 TTATGTAAT
1 TTATGTAAT
63060011 TTATGT-AT
1 TTATGTAAT
*
63060019 AATAT-TAAT
1 -TTATGTAAT
* *
63060028 TAAT-TAAG
1 TTATGTAAT
63060036 TTATGTAAT
1 TTATGTAAT
63060045 TTATGTATAAT
1 TTATG--TAAT
63060056 ATTAAT-TAAT
1 -TT-ATGTAAT
* *
63060066 TAAT-TAAG
1 TTATGTAAT
63060074 TTATGTAAT
1 TTATGTAAT
63060083 TTATGTATTAT
1 TTATGTA--AT
63060094 ATTAATGT-AT
1 -TT-ATGTAAT
63060104 GTTATGTAAT
1 -TTATGTAAT
63060114 TTATG
1 TTATG
63060119 AATAATTAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 26
0.69 0.09 0.21
Matches are distributed among these distances:
8 19 0.23
9 39 0.46
10 10 0.12
11 6 0.07
12 4 0.05
13 6 0.07
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (9 bp):
TTATGTAAT
Found at i:63060154 original size:16 final size:16
Alignment explanation
Indices: 63060132--63060184 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
63060122 AATTAAAAAA
63060132 ATGTAAGTTATGTAAG-T
1 ATGTAAG-T-TGTAAGTT
*
63060149 -TGTAAGTTATAAGTT
1 ATGTAAGTTGTAAGTT
*
63060164 ATGTAAGTTGTCAGTT
1 ATGTAAGTTGTAAGTT
63060180 ATGTA
1 ATGTA
63060185 TAATATTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 5 0.16
15 2 0.06
16 24 0.77
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (16 bp):
ATGTAAGTTGTAAGTT
Found at i:63060162 original size:23 final size:23
Alignment explanation
Indices: 63060135--63060181 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
63060125 TAAAAAAATG
63060135 TAAGTTATGTAAGTTGTAAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
*
63060158 TAAGTTATGTAAGTTGTCAGTTA
1 TAAGTTATGTAAGTTGTAAGTTA
63060181 T
1 T
63060182 GTATAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (23 bp):
TAAGTTATGTAAGTTGTAAGTTA
Found at i:63063148 original size:9 final size:8
Alignment explanation
Indices: 63063098--63063196 Score: 61
Period size: 7 Copynumber: 13.0 Consensus size: 8
63063088 ATCGTTGAAA
63063098 CCCTAAAC
1 CCCTAAAC
*
63063106 CCC-AAAT
1 CCCTAAAC
*
63063113 CCAT-AAC
1 CCCTAAAC
*
63063120 CCCTTAAC
1 CCCTAAAC
63063128 CCCT-AAC
1 CCCTAAAC
63063135 CCCTAAATC
1 CCCTAAA-C
63063144 CCCT-AAC
1 CCCTAAAC
63063151 CCCTAAA-
1 CCCTAAAC
* *
63063158 GCAT-AAC
1 CCCTAAAC
*
63063165 CCTTAAA-
1 CCCTAAAC
63063172 CCCTAAATCC
1 CCCTAAA--C
63063182 CCCT-AAC
1 CCCTAAAC
63063189 CCCTAAAC
1 CCCTAAAC
63063197 ATCAAATTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 22
0.70 0.09 0.22
Matches are distributed among these distances:
6 2 0.03
7 37 0.52
8 21 0.30
9 7 0.10
10 4 0.06
ACGTcount: A:0.35, C:0.46, G:0.01, T:0.17
Consensus pattern (8 bp):
CCCTAAAC
Found at i:63063165 original size:37 final size:38
Alignment explanation
Indices: 63063124--63063195 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
63063114 CATAACCCCT
*
63063124 TAACCCCTAACCCCTAAAT-CCCCTAACCCCTAAAGCA
1 TAACCCCTAAACCCTAAATCCCCCTAACCCCTAAAGCA
*
63063161 TAACCCTTAAACCCTAAATCCCCCTAACCCCTAAA
1 TAACCCCTAAACCCTAAATCCCCCTAACCCCTAAA
63063196 CATCAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 17 0.53
38 15 0.47
ACGTcount: A:0.36, C:0.44, G:0.01, T:0.18
Consensus pattern (38 bp):
TAACCCCTAAACCCTAAATCCCCCTAACCCCTAAAGCA
Found at i:63065058 original size:41 final size:40
Alignment explanation
Indices: 63064994--63065313 Score: 295
Period size: 41 Copynumber: 7.8 Consensus size: 40
63064984 TTTTGTTACT
* ** * *
63064994 ATTAGCGGCGCTTCGGTAAAAACGCCGCTAAAGGTCAATAC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGA-AC
* * * *
63065035 ATTAGCGGCGCTTAGATACAAACGCCGTTGAAGAGA-AGAGA-
1 ATTAGCGGCGCTTAGACAAAAACGCCGCT-AA-AGATCGA-AC
* * ** * **
63065076 ATTAGTGGCGCTCAGTTAAAAACGCTGCTAAAGATCCGAGT
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGAT-CGAAC
*
63065117 ATTAGCGGCGCTT-GTATAAAAACGCCGCTAAAGATCCGAAC
1 ATTAGCGGCGCTTAG-ACAAAAACGCCGCTAAAGAT-CGAAC
* * *
63065158 ATTAGCGGCGCATAGACAAAAACGCCACTAAAGATCCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGAT-CGAAC
* * *
63065199 ATTAGCGGCGCCTACACAAAAACGCCGCTAAAGACTCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGA-TCGAAC
* *
63065240 ATTAGCGGCGCCTAGACAAAAACGCCGCTAAAGATTCGAGC
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGA-TCGAAC
*
63065281 ATTAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAG
63065314 GTTTAAAAAA
Statistics
Matches: 238, Mismatches: 33, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.01
40 3 0.01
41 224 0.94
42 6 0.03
43 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (40 bp):
ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCGAAC
Found at i:63065220 original size:123 final size:120
Alignment explanation
Indices: 63064993--63065313 Score: 349
Period size: 123 Copynumber: 2.6 Consensus size: 120
63064983 TTTTTGTTAC
* * * * *
63064993 TATTAGCGGCGCTTCGGTAAAAACGCCGCTAAAGGTCAATACATTAGCGGCGCTTAGATACAAAC
1 TATTAGCGGCGCTT-GATAAAAACGCCGCTAAAGATCGA-ACATTAGCGGCGCTTAGACAAAAAC
* * * * *
63065058 GCCGTTGAAGAGAAGAGAATTAGTGGCGCTCAGTTAAAAACGCTGCTAAAGA-TCCGAG
64 GCCGCTAAAGAGAAGAGAATTAGCGGCGCTCAG-CAAAAACGCCGCTAAAGACT-CGAG
*
63065116 TATTAGCGGCGCTTGTATAAAAACGCCGCTAAAGATCCGAACATTAGCGGCGCATAGACAAAAAC
1 TATTAGCGGCGCTTG-ATAAAAACGCCGCTAAAGAT-CGAACATTAGCGGCGCTTAGACAAAAAC
* *** *
63065181 GCCACTAAAGATCCGAGCATTAGCGGCGCCTACA-CAAAAACGCCGCTAAAGACTCGAG
64 GCCGCTAAAGAGAAGAGAATTAGCGGCG-CT-CAGCAAAAACGCCGCTAAAGACTCGAG
* * * * *
63065239 CATTAGCGGCGCCTAGACAAAAACGCCGCTAAAGATTCGAGCATTAGCGGCGCTTACACAAAAAC
1 TATTAGCGGCG-CTTGATAAAAACGCCGCTAAAGA-TCGAACATTAGCGGCGCTTAGACAAAAAC
63065304 GCCGCTAAAG
64 GCCGCTAAAG
63065314 GTTTAAAAAA
Statistics
Matches: 168, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
122 1 0.01
123 156 0.93
124 9 0.05
125 2 0.01
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.17
Consensus pattern (120 bp):
TATTAGCGGCGCTTGATAAAAACGCCGCTAAAGATCGAACATTAGCGGCGCTTAGACAAAAACGC
CGCTAAAGAGAAGAGAATTAGCGGCGCTCAGCAAAAACGCCGCTAAAGACTCGAG
Found at i:63073983 original size:4 final size:4
Alignment explanation
Indices: 63073967--63074005 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
63073957 ATACTGCACA
*
63073967 TATG TATG AATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
63074006 ACACACATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:63078402 original size:25 final size:25
Alignment explanation
Indices: 63078368--63078418 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
63078358 TTTAAAAAAG
63078368 AAATAATATTTGATACATTGTCGAT
1 AAATAATATTTGATACATTGTCGAT
63078393 AAATAATATTTGATACATTGTCGAT
1 AAATAATATTTGATACATTGTCGAT
63078418 A
1 A
63078419 GAGGTGCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (25 bp):
AAATAATATTTGATACATTGTCGAT
Found at i:63088515 original size:26 final size:26
Alignment explanation
Indices: 63088493--63088547 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
63088483 GTTGGGTTAG
63088493 GTTCGGACTCAAGTTAATCGGGTTGA
1 GTTCGGACTCAAGTTAATCGGGTTGA
* **
63088519 GTTTGGTTTCAAGTTAATCGGGTTGA
1 GTTCGGACTCAAGTTAATCGGGTTGA
63088545 GTT
1 GTT
63088548 TGGTTTCAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.11, G:0.31, T:0.38
Consensus pattern (26 bp):
GTTCGGACTCAAGTTAATCGGGTTGA
Found at i:63088548 original size:26 final size:26
Alignment explanation
Indices: 63088501--63088558 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
63088491 AGGTTCGGAC
63088501 TCAAGTTAATCGGGTTGAGTTTGGTT
1 TCAAGTTAATCGGGTTGAGTTTGGTT
63088527 TCAAGTTAATCGGGTTGAGTTTGGTT
1 TCAAGTTAATCGGGTTGAGTTTGGTT
63088553 TCAAGT
1 TCAAGT
63088559 CAGAACTGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.21, C:0.09, G:0.29, T:0.41
Consensus pattern (26 bp):
TCAAGTTAATCGGGTTGAGTTTGGTT
Found at i:63091017 original size:22 final size:20
Alignment explanation
Indices: 63090981--63091039 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
63090971 GGCCCGGCCT
63090981 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
63091003 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
63091024 AAGTATTTTAAAAATA
1 ATTTATTTTAAAAATA
63091040 TTTTAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:63091030 original size:21 final size:20
Alignment explanation
Indices: 63091006--63091066 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
63090996 ACCAAAAATT
63091006 TATTTTAAAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAA
***
63091026 GTATTTTAAAAATATTTTAAAA
1 -TATTTTAAAAAT-TAAAAAAA
63091048 TATTTT-AAAATTAAAAAAA
1 TATTTTAAAAATTAAAAAAA
63091067 ATAAAAATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 5 0.15
20 5 0.15
21 18 0.55
22 5 0.15
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
TATTTTAAAAATTAAAAAAA
Found at i:63091041 original size:11 final size:11
Alignment explanation
Indices: 63091021--63091057 Score: 58
Period size: 10 Copynumber: 3.4 Consensus size: 11
63091011 TAAAAATTAA
63091021 AAAAAGTATTTT
1 AAAAA-TATTTT
63091033 AAAAATATTTT
1 AAAAATATTTT
63091044 -AAAATATTTT
1 AAAAATATTTT
63091054 AAAA
1 AAAA
63091058 TTAAAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.42
11 9 0.38
12 5 0.21
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:63091501 original size:15 final size:16
Alignment explanation
Indices: 63091471--63091504 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
63091461 AAATTTATAA
63091471 AAATATTCAAAAAAAT
1 AAATATTCAAAAAAAT
*
63091487 AAATATT-ATAAAAAT
1 AAATATTCAAAAAAAT
63091502 AAA
1 AAA
63091505 AGTTACATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATATTCAAAAAAAT
Found at i:63098906 original size:27 final size:27
Alignment explanation
Indices: 63098876--63098960 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
63098866 GTTGTTGATG
63098876 TTTGAAAATTTCATTTCTTGTATGCTC
1 TTTGAAAATTTCATTTCTTGTATGCTC
* ** * * * *
63098903 TTTGGCAAGCTT-AGTCCGTTGT-TGATG
1 TTT-GAAAATTTCATTTC-TTGTATGCTC
63098930 TTTGAAAATTTCATTTCTTGTATGCTC
1 TTTGAAAATTTCATTTCTTGTATGCTC
63098957 TTTG
1 TTTG
63098961 GCATACATGT
Statistics
Matches: 40, Mismatches: 14, Indels: 8
0.65 0.23 0.13
Matches are distributed among these distances:
26 9 0.22
27 22 0.55
28 9 0.22
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.49
Consensus pattern (27 bp):
TTTGAAAATTTCATTTCTTGTATGCTC
Found at i:63098918 original size:54 final size:54
Alignment explanation
Indices: 63098854--63098963 Score: 220
Period size: 54 Copynumber: 2.0 Consensus size: 54
63098844 TTGGCAAAAT
63098854 CAAGCTTAGTCCGTTGTTGATGTTTGAAAATTTCATTTCTTGTATGCTCTTTGG
1 CAAGCTTAGTCCGTTGTTGATGTTTGAAAATTTCATTTCTTGTATGCTCTTTGG
63098908 CAAGCTTAGTCCGTTGTTGATGTTTGAAAATTTCATTTCTTGTATGCTCTTTGG
1 CAAGCTTAGTCCGTTGTTGATGTTTGAAAATTTCATTTCTTGTATGCTCTTTGG
63098962 CA
1 CA
63098964 TACATGTATT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.19, C:0.15, G:0.20, T:0.45
Consensus pattern (54 bp):
CAAGCTTAGTCCGTTGTTGATGTTTGAAAATTTCATTTCTTGTATGCTCTTTGG
Found at i:63098950 original size:26 final size:26
Alignment explanation
Indices: 63098867--63098950 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 26
63098857 GCTTAGTCCG
63098867 TTGTTGATGTTTGAAAATTTCATTTC
1 TTGTTGATGTTTGAAAATTTCATTTC
* * * ** * *
63098893 TTGTATGCTCTTTGGCAAGCTT-AGTCC
1 TTGT-TGATGTTT-GAAAATTTCATTTC
63098920 GTTGTTGATGTTTGAAAATTTCATTTC
1 -TTGTTGATGTTTGAAAATTTCATTTC
63098947 TTGT
1 TTGT
63098951 ATGCTCTTTG
Statistics
Matches: 40, Mismatches: 14, Indels: 8
0.65 0.23 0.13
Matches are distributed among these distances:
26 13 0.32
27 18 0.45
28 9 0.22
ACGTcount: A:0.19, C:0.12, G:0.19, T:0.50
Consensus pattern (26 bp):
TTGTTGATGTTTGAAAATTTCATTTC
Found at i:63115831 original size:30 final size:31
Alignment explanation
Indices: 63115795--63115854 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
63115785 ATTAATATAA
* *
63115795 ATTCAAAATAGAT-AAACAAATCACCTCTAC
1 ATTCAAAACAAATAAAACAAATCACCTCTAC
*
63115825 ATTCAAAACAAATAAAATAAATCACCTCTA
1 ATTCAAAACAAATAAAACAAATCACCTCTA
63115855 GACAAATGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.53, C:0.22, G:0.02, T:0.23
Consensus pattern (31 bp):
ATTCAAAACAAATAAAACAAATCACCTCTAC
Found at i:63116178 original size:22 final size:23
Alignment explanation
Indices: 63116153--63116197 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
63116143 AGACTCACAC
63116153 AACCA-TATCAACTTCAG-AAGCA
1 AACCATTATCAAC-TCAGTAAGCA
63116175 AACCATTATCAACTCAGTAAGCA
1 AACCATTATCAACTCAGTAAGCA
63116198 TACAGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (23 bp):
AACCATTATCAACTCAGTAAGCA
Found at i:63124215 original size:18 final size:19
Alignment explanation
Indices: 63124182--63124222 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
63124172 ACTAAAATTC
63124182 AAATATAACCTTTTAAAAGT
1 AAATATAA-CTTTTAAAAGT
*
63124202 AAATATAA-TTTTAAAGGT
1 AAATATAACTTTTAAAAGT
63124220 AAA
1 AAA
63124223 AGTGTCGACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (19 bp):
AAATATAACTTTTAAAAGT
Found at i:63135568 original size:3 final size:3
Alignment explanation
Indices: 63135562--63135653 Score: 184
Period size: 3 Copynumber: 30.7 Consensus size: 3
63135552 ATCATCATCA
63135562 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63135610 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
63135654 ACCAATATAT
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:63142144 original size:16 final size:16
Alignment explanation
Indices: 63142064--63142155 Score: 58
Period size: 16 Copynumber: 5.3 Consensus size: 16
63142054 GAAACTCTTT
*
63142064 TTTTTAAAAAAACGAAA
1 TTTTT-AAAACACGAAA
* * *
63142081 ATTTTGAAACACGAGA
1 TTTTTAAAACACGAAA
*
63142097 TTTTTAGGAAACACGAATTTTC
1 TTTTTA--AAACACGAA----A
*
63142119 TTTTTGAAACACGAAA
1 TTTTTAAAACACGAAA
*
63142135 TTTTTAAAACACAAAA
1 TTTTTAAAACACGAAA
63142151 TTTTT
1 TTTTT
63142156 TGAAAACATA
Statistics
Matches: 57, Mismatches: 12, Indels: 13
0.70 0.15 0.16
Matches are distributed among these distances:
16 31 0.54
17 4 0.07
18 8 0.14
20 9 0.16
22 5 0.09
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (16 bp):
TTTTTAAAACACGAAA
Found at i:63142161 original size:18 final size:18
Alignment explanation
Indices: 63142119--63142173 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
63142109 ACGAATTTTC
*
63142119 TTTTTG-AAACACGAAA-
1 TTTTTGAAAACACAAAAT
63142135 TTTTT-AAAACACAAAAT
1 TTTTTGAAAACACAAAAT
*
63142152 TTTTTGAAAACATAAAAT
1 TTTTTGAAAACACAAAAT
63142170 TTTT
1 TTTT
63142174 GATAAAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 14 0.41
17 5 0.15
18 15 0.44
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.40
Consensus pattern (18 bp):
TTTTTGAAAACACAAAAT
Found at i:63142216 original size:18 final size:17
Alignment explanation
Indices: 63142183--63142423 Score: 89
Period size: 17 Copynumber: 13.6 Consensus size: 17
63142173 TGATAAAATA
* *
63142183 TGAAACACGAGGATTTTT
1 TGAAACACGA-AAATTTT
*
63142201 TGAAACACGAAAATTTA
1 TGAAACACGAAAATTTT
**
63142218 TGAAACACGGTCAATTTTTT
1 TGAAACAC-G--AAAATTTT
63142238 TGAAAACACGAAAA-TTT
1 TG-AAACACGAAAATTTT
* *
63142255 TGAAAGACG-AGATTTT
1 TGAAACACGAAAATTTT
* * *
63142271 TGAAAACATGGAAATTTA
1 TG-AAACACGAAAATTTT
*
63142289 TGAAACAC-AGAATTTTT
1 TGAAACACGA-AAATTTT
*
63142306 TGAAAACAAGAAAATTTT
1 TG-AAACACGAAAATTTT
* * * ** *
63142324 CGGAATACG-GGACTTT
1 TGAAACACGAAAATTTT
* *
63142340 TGAAAACAAGGAAATTTTTT
1 TG-AAAC-ACGAAA-ATTTT
*
63142360 TGAAAACACGACAATTTTT
1 TG-AAACACGA-AAATTTT
*
63142379 TGAAACACTG-GAA-TTT
1 TGAAACAC-GAAAATTTT
*
63142395 TGAAAACACGAAGATTTT
1 TG-AAACACGAAAATTTT
*
63142413 TTAAACACGAA
1 TGAAACACGAA
63142424 TTTTTTTTAA
Statistics
Matches: 163, Mismatches: 41, Indels: 39
0.67 0.17 0.16
Matches are distributed among these distances:
15 2 0.01
16 22 0.13
17 57 0.35
18 44 0.27
19 12 0.07
20 20 0.12
21 6 0.04
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (17 bp):
TGAAACACGAAAATTTT
Found at i:63142221 original size:35 final size:35
Alignment explanation
Indices: 63142183--63142423 Score: 162
Period size: 35 Copynumber: 6.9 Consensus size: 35
63142173 TGATAAAATA
63142183 TGAAACACGAGGATTTTTTG-AAACACGAAAATTT
1 TGAAACACGAGGATTTTTTGAAAACACGAAAATTT
*
63142217 ATGAAACACG-GTCAATTTTTTTGAAAACACGAAAATTT
1 -TGAAACACGAG--GA-TTTTTTGAAAACACGAAAATTT
* * *
63142255 TGAAAGACGA-GA-TTTTTGAAAACATGGAAATTT
1 TGAAACACGAGGATTTTTTGAAAACACGAAAATTT
* *
63142288 ATGAAACAC-AGAATTTTTTGAAAACAAGAAAATTT
1 -TGAAACACGAGGATTTTTTGAAAACACGAAAATTT
* * * * *
63142323 TCGGAATACG-GGA-CTTTTGAAAACAAGGAAATTTTTT
1 T-GAAACACGAGGATTTTTTGAAAAC-ACGAAA--ATTT
** *
63142360 TGAAAACACGACAATTTTTTG-AAACACTG-GAATTT
1 TG-AAACACGAGGATTTTTTGAAAACAC-GAAAATTT
*
63142395 TGAAAACACGAAGATTTTTT--AAACACGAA
1 TG-AAACACGAGGATTTTTTGAAAACACGAA
63142424 TTTTTTTTAA
Statistics
Matches: 162, Mismatches: 26, Indels: 37
0.72 0.12 0.16
Matches are distributed among these distances:
33 21 0.13
34 26 0.16
35 62 0.38
36 2 0.01
37 26 0.16
38 20 0.12
39 5 0.03
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (35 bp):
TGAAACACGAGGATTTTTTGAAAACACGAAAATTT
Found at i:63142309 original size:17 final size:17
Alignment explanation
Indices: 63142119--63142323 Score: 71
Period size: 17 Copynumber: 12.2 Consensus size: 17
63142109 ACGAATTTTC
63142119 TTTTTGAAACAC-GAAA
1 TTTTTGAAACACAGAAA
*
63142135 TTTTTAAAACACA-AAA
1 TTTTTGAAACACAGAAA
*
63142151 TTTTTTGAAA-ACATAAAA
1 -TTTTTGAAACACA-GAAA
*
63142169 TTTTTG----ATA-AAA
1 TTTTTGAAACACAGAAA
* * *
63142181 --TATGAAACACGAGGAT
1 TTTTTGAAACAC-AGAAA
63142197 TTTTTGAAACAC-GAAAA
1 TTTTTGAAACACAG-AAA
* * *
63142214 TTTATGAAACACGGTCAATT
1 TTTTTGAAACACAG--AA-A
63142234 TTTTTGAAA-ACACGAAA
1 TTTTTGAAACACA-GAAA
* * *
63142251 ATTTTGAAAGAC-GAGA
1 TTTTTGAAACACAGAAA
63142267 TTTTTGAAA-ACATGGAAA
1 TTTTTGAAACACA--GAAA
* *
63142285 TTTATGAAACACAGAAT
1 TTTTTGAAACACAGAAA
63142302 TTTTTGAAA-ACAAGAAAA
1 TTTTTGAAACAC-AG-AAA
63142320 TTTT
1 TTTT
63142324 CGGAATACGG
Statistics
Matches: 141, Mismatches: 24, Indels: 46
0.67 0.11 0.22
Matches are distributed among these distances:
10 3 0.02
12 3 0.02
14 3 0.02
15 3 0.02
16 32 0.23
17 47 0.33
18 34 0.24
19 7 0.05
20 9 0.06
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (17 bp):
TTTTTGAAACACAGAAA
Found at i:63142323 original size:19 final size:19
Alignment explanation
Indices: 63142299--63142383 Score: 52
Period size: 19 Copynumber: 4.6 Consensus size: 19
63142289 TGAAACACAG
63142299 AATTTTTTGAAAACAAGAA
1 AATTTTTTGAAAACAAGAA
** * *
63142318 AATTTTCGGAATAC--G-G
1 AATTTTTTGAAAACAAGAA
* *
63142334 GACTTTT-GAAAACAAGGAA
1 AATTTTTTGAAAACAA-GAA
* * *
63142353 ATTTTTTTGAAAACACGAC
1 AATTTTTTGAAAACAAGAA
63142372 AATTTTTTGAAA
1 AATTTTTTGAAA
63142384 CACTGGAATT
Statistics
Matches: 46, Mismatches: 15, Indels: 10
0.65 0.21 0.14
Matches are distributed among these distances:
15 5 0.11
16 4 0.09
17 1 0.02
18 1 0.02
19 28 0.61
20 7 0.15
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.33
Consensus pattern (19 bp):
AATTTTTTGAAAACAAGAA
Found at i:63142375 original size:20 final size:19
Alignment explanation
Indices: 63142337--63142429 Score: 62
Period size: 19 Copynumber: 5.2 Consensus size: 19
63142327 AATACGGGAC
*
63142337 TTTTGAAAACAAGGAAATTT
1 TTTTGAAAACAACGAAA-TT
63142357 TTTTGAAAAC-ACGACAATT
1 TTTTGAAAACAACGA-AATT
*
63142376 TTTTG-AAAC-ACTGGAA--
1 TTTTGAAAACAAC-GAAATT
63142392 TTTTGAAAAC-ACGAAGATT
1 TTTTGAAAACAACGAA-ATT
63142411 TTTT--AAAC-ACG-AATT
1 TTTTGAAAACAACGAAATT
63142426 TTTT
1 TTTT
63142430 TTAAATACCG
Statistics
Matches: 64, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
15 7 0.11
16 8 0.12
17 14 0.22
18 8 0.12
19 15 0.23
20 12 0.19
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (19 bp):
TTTTGAAAACAACGAAATT
Found at i:63142429 original size:17 final size:17
Alignment explanation
Indices: 63142363--63142434 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
63142353 ATTTTTTTGA
63142363 AAACACGACA-ATTTTTT
1 AAACACGA-AGATTTTTT
* **
63142380 GAAACACTGGA-ATTTTGA
1 -AAACAC-GAAGATTTTTT
63142398 AAACACGAAGATTTTTT
1 AAACACGAAGATTTTTT
**
63142415 AAACACGAATTTTTTTT
1 AAACACGAAGATTTTTT
63142432 AAA
1 AAA
63142435 TACCGTATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
16 2 0.05
17 29 0.66
18 12 0.27
19 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (17 bp):
AAACACGAAGATTTTTT
Found at i:63143105 original size:10 final size:10
Alignment explanation
Indices: 63143080--63143151 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
63143070 TTCATTACTT
*
63143080 TTTTTATTTC
1 TTTTTCTTTC
63143090 TTTTTCTTTC
1 TTTTTCTTTC
63143100 TTTTTC--TC
1 TTTTTCTTTC
*
63143108 TGTTTCCTTTC
1 T-TTTTCTTTC
**
63143119 TCCTTC-TTC
1 TTTTTCTTTC
*
63143128 TTTTCCCTTTC
1 TTTT-TCTTTC
*
63143139 TTTTTTTTTC
1 TTTTTCTTTC
63143149 TTT
1 TTT
63143152 CAACCAAGCA
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
8 3 0.06
9 9 0.19
10 25 0.53
11 10 0.21
ACGTcount: A:0.01, C:0.24, G:0.01, T:0.74
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:63143117 original size:19 final size:20
Alignment explanation
Indices: 63143095--63143143 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
63143085 ATTTCTTTTT
63143095 CTTTCTTTTTC-TCTGTTT-C
1 CTTTCTTTTTCTTCT-TTTCC
**
63143114 CTTTCTCCTTCTTCTTTTCC
1 CTTTCTTTTTCTTCTTTTCC
63143134 CTTTCTTTTT
1 CTTTCTTTTT
63143144 TTTTCTTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (20 bp):
CTTTCTTTTTCTTCTTTTCC
Found at i:63143262 original size:11 final size:11
Alignment explanation
Indices: 63143242--63143270 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63143232 CGTTCTCTTT
63143242 TCTT-CTTTTC
1 TCTTCCTTTTC
63143252 TCTTCCTTTTC
1 TCTTCCTTTTC
63143263 TCTTCCTT
1 TCTTCCTT
63143271 CTCTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (11 bp):
TCTTCCTTTTC
Found at i:63155577 original size:28 final size:28
Alignment explanation
Indices: 63155546--63155605 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
63155536 TAATTAGTCG
* * *
63155546 TTTATTTTTTTTTTTTTTTTTTGTTATA
1 TTTATTTTATGTTTTTATTTTTGTTATA
*
63155574 TTTATTTTATGTTTTTATTTTTGTTTTA
1 TTTATTTTATGTTTTTATTTTTGTTATA
63155602 TTTA
1 TTTA
63155606 AATATCTGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (28 bp):
TTTATTTTATGTTTTTATTTTTGTTATA
Found at i:63156209 original size:24 final size:25
Alignment explanation
Indices: 63156154--63156209 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
63156144 AATAGATTGA
*
63156154 ATTT-ATTGTGCTATATATTTTGGT
1 ATTTAATTGTGCTATATATTTTAGT
*
63156178 ATTGTAATTGTGCTA-ATTTTTTAGT
1 ATT-TAATTGTGCTATATATTTTAGT
63156203 ATTTAAT
1 ATTTAAT
63156210 ATGATGCAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 9 0.32
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (25 bp):
ATTTAATTGTGCTATATATTTTAGT
Found at i:63156546 original size:30 final size:29
Alignment explanation
Indices: 63156510--63156569 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
63156500 CTTAACAAGC
63156510 AATGCCTCTAAAATAATAACAAAATTAACA
1 AATGCCT-TAAAATAATAACAAAATTAACA
* ** *
63156540 AATGCCTTTAAATGGTAATAAAATTAACA
1 AATGCCTTAAAATAATAACAAAATTAACA
63156569 A
1 A
63156570 TAAAATAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 19 0.73
30 7 0.27
ACGTcount: A:0.53, C:0.13, G:0.07, T:0.27
Consensus pattern (29 bp):
AATGCCTTAAAATAATAACAAAATTAACA
Found at i:63165140 original size:11 final size:11
Alignment explanation
Indices: 63165126--63165161 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
63165116 TTTTTTACTG
63165126 ATTTAAATATT
1 ATTTAAATATT
63165137 ATTTAAATATT
1 ATTTAAATATT
63165148 ATTTAAATA-T
1 ATTTAAATATT
63165158 ATTT
1 ATTT
63165162 TCTTAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTAAATATT
Found at i:63180228 original size:17 final size:17
Alignment explanation
Indices: 63180203--63180259 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
63180193 AAGACAAGCC
*
63180203 CTTTTTTTTTTCTTTTT
1 CTTTCTTTTTTCTTTTT
*
63180220 CTTTCTTTTTTCTTCTGT
1 CTTTCTTTTTTCTT-TTT
* *
63180238 -TTTCCTTTCTC-TTTT
1 CTTTCTTTTTTCTTTTT
63180253 CTTTCTT
1 CTTTCTT
63180260 CCCTTTTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 2 0.06
16 6 0.19
17 22 0.69
18 2 0.06
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (17 bp):
CTTTCTTTTTTCTTTTT
Found at i:63180231 original size:11 final size:11
Alignment explanation
Indices: 63180203--63180259 Score: 64
Period size: 11 Copynumber: 5.3 Consensus size: 11
63180193 AAGACAAGCC
*
63180203 CTTTTTTTTTT
1 CTTTTTTCTTT
63180214 C-TTTTTCTTT
1 CTTTTTTCTTT
63180224 CTTTTTTC-TT
1 CTTTTTTCTTT
*
63180234 CTGTTTTCCTTT
1 CT-TTTTTCTTT
*
63180246 CTCTTTTCTTT
1 CTTTTTTCTTT
63180257 CTT
1 CTT
63180260 CCCTTTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
10 13 0.34
11 21 0.55
12 4 0.11
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (11 bp):
CTTTTTTCTTT
Found at i:63191272 original size:16 final size:16
Alignment explanation
Indices: 63191250--63191333 Score: 52
Period size: 15 Copynumber: 5.3 Consensus size: 16
63191240 AAAAAATTTA
63191250 TAAACAAGAGTTGATTC
1 TAAACAAGAGTT-ATTC
*
63191267 -AAACAAGGGTTATTC
1 TAAACAAGAGTTATTC
*
63191282 TAAACATA-A-CTATTC
1 TAAACA-AGAGTTATTC
**
63191297 TTAAAACATTA-TTATTC
1 -T-AAACAAGAGTTATTC
*
63191314 TAAACAA-AGTTGTTC
1 TAAACAAGAGTTATTC
63191329 TAAAC
1 TAAAC
63191334 TTTAACCGTT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
14 1 0.02
15 24 0.44
16 17 0.31
17 12 0.22
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (16 bp):
TAAACAAGAGTTATTC
Found at i:63191295 original size:15 final size:15
Alignment explanation
Indices: 63191277--63191319 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
63191267 AAACAAGGGT
63191277 TATTCTAAACATAAC
1 TATTCTAAACATAAC
* *
63191292 TATTCTTAAAACATTAT
1 TATTC-T-AAACATAAC
63191309 TATTCTAAACA
1 TATTCTAAACA
63191320 AAGTTGTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 10 0.42
16 2 0.08
17 12 0.50
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (15 bp):
TATTCTAAACATAAC
Found at i:63207172 original size:6 final size:7
Alignment explanation
Indices: 63207135--63207179 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
63207125 AAAAGTGAAG
63207135 TTTTTAC
1 TTTTTAC
63207142 TTTTTAC
1 TTTTTAC
***
63207149 TACATA-
1 TTTTTAC
63207155 TTTTTAC
1 TTTTTAC
63207162 TTTTTAC
1 TTTTTAC
63207169 TTTTTAC
1 TTTTTAC
63207176 TTTT
1 TTTT
63207180 GATGTCCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 3 0.10
7 28 0.90
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTTAC
Found at i:63219880 original size:95 final size:95
Alignment explanation
Indices: 63219712--63219901 Score: 353
Period size: 95 Copynumber: 2.0 Consensus size: 95
63219702 TGTGAATCAT
*
63219712 TTGGACTCTTCTCGAAGTAAGGAGATAAAAACCCAAGACTAAAACTCTACATAGACACTGAAAAC
1 TTGGACTCTTCTCGAAATAAGGAGATAAAAACCCAAGACTAAAACTCTACATAGACACTGAAAAC
*
63219777 AATATTTCCATTCGAAGATTTGATTGACTG
66 AATATTTCCATTCGAACATTTGATTGACTG
*
63219807 TTGGGCTCTTCTCGAAATAAGGAGATAAAAACCCAAGACTAAAACTCTACATAGACACTGAAAAC
1 TTGGACTCTTCTCGAAATAAGGAGATAAAAACCCAAGACTAAAACTCTACATAGACACTGAAAAC
63219872 AATATTTCCATTCGAACATTTGATTGACTG
66 AATATTTCCATTCGAACATTTGATTGACTG
63219902 CTCGACGAAC
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 92 1.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (95 bp):
TTGGACTCTTCTCGAAATAAGGAGATAAAAACCCAAGACTAAAACTCTACATAGACACTGAAAAC
AATATTTCCATTCGAACATTTGATTGACTG
Found at i:63224996 original size:15 final size:14
Alignment explanation
Indices: 63224949--63225018 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 14
63224939 TTTTATACAT
*
63224949 TTAATTAAAACTAA
1 TTAATTAAAATTAA
* *
63224963 TTAATTATAATTTAT
1 TTAATTA-AAATTAA
63224978 TTAATTAAACATTAA
1 TTAATTAAA-ATTAA
*
63224993 TTAA-CAAAACTTAA
1 TTAATTAAAA-TTAA
63225007 TGATAATTAAAA
1 T--TAATTAAAA
63225019 AAGTTGGTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
13 1 0.02
14 17 0.40
15 18 0.42
16 3 0.07
17 4 0.09
ACGTcount: A:0.53, C:0.06, G:0.01, T:0.40
Consensus pattern (14 bp):
TTAATTAAAATTAA
Found at i:63229245 original size:15 final size:15
Alignment explanation
Indices: 63229225--63229254 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63229215 AATCTAACAT
63229225 ATAAAGATTAATTTA
1 ATAAAGATTAATTTA
63229240 ATAAAGATTAATTTA
1 ATAAAGATTAATTTA
63229255 CCCATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (15 bp):
ATAAAGATTAATTTA
Found at i:63232444 original size:18 final size:18
Alignment explanation
Indices: 63232423--63232495 Score: 85
Period size: 18 Copynumber: 3.9 Consensus size: 18
63232413 AAAAATATAT
*
63232423 AAATTTTGGAATTTTTAA
1 AAATTTTTGAATTTTTAA
63232441 AAATATTTTGAA-TTTTAA
1 AAAT-TTTTGAATTTTTAA
*
63232459 AAATTATTTGAATTTTTGA
1 AAATT-TTTGAATTTTTAA
63232478 AAATTACTTTGAATTTTT
1 AAATT--TTTGAATTTTT
63232496 TTTAAAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.02
18 20 0.42
19 16 0.33
20 11 0.23
ACGTcount: A:0.38, C:0.01, G:0.08, T:0.52
Consensus pattern (18 bp):
AAATTTTTGAATTTTTAA
Found at i:63232455 original size:19 final size:19
Alignment explanation
Indices: 63232425--63232495 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
63232415 AAATATATAA
63232425 ATTTTGGAATTTTTAAAAAT
1 ATTTT-GAATTTTTAAAAAT
63232445 ATTTTGAA-TTTTAAAAAT
1 ATTTTGAATTTTTAAAAAT
*
63232463 -TATTTGAATTTTTGAAAATT
1 AT-TTTGAATTTTT-AAAAAT
*
63232483 ACTTTGAATTTTT
1 ATTTTGAATTTTT
63232496 TTTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
17 1 0.02
18 16 0.36
19 7 0.16
20 21 0.47
ACGTcount: A:0.37, C:0.01, G:0.08, T:0.54
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:63232508 original size:20 final size:19
Alignment explanation
Indices: 63232431--63232495 Score: 89
Period size: 19 Copynumber: 3.4 Consensus size: 19
63232421 ATAAATTTTG
63232431 GAATTTTTAAAAA-TATTTT
1 GAATTTTTAAAAATTA-TTT
63232450 GAA-TTTTAAAAATTATTT
1 GAATTTTTAAAAATTATTT
*
63232468 GAATTTTTGAAAATTACTTT
1 GAATTTTTAAAAATTA-TTT
63232488 GAATTTTT
1 GAATTTTT
63232496 TTTAAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
18 15 0.36
19 16 0.38
20 11 0.26
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (19 bp):
GAATTTTTAAAAATTATTT
Found at i:63246810 original size:21 final size:20
Alignment explanation
Indices: 63246785--63246841 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
63246775 AACTTGAACC
63246785 CGAACCCTAAACACTAAACTT
1 CGAACCCTAAAC-CTAAACTT
* *
63246806 CGAACCTTGAACCTAAAC-T
1 CGAACCCTAAACCTAAACTT
* *
63246825 CAAACCC-AAACCCAAAC
1 CGAACCCTAAACCTAAAC
63246842 CTAAACCTCA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
18 8 0.27
19 6 0.20
20 6 0.20
21 10 0.33
ACGTcount: A:0.44, C:0.37, G:0.05, T:0.14
Consensus pattern (20 bp):
CGAACCCTAAACCTAAACTT
Found at i:63246820 original size:27 final size:26
Alignment explanation
Indices: 63246751--63246823 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
63246741 TTTTTTACCC
*
63246751 TGAACCTTGAACTCTAAACCCCCAAACT
1 TGAACCTTGAAC-CTAAA-CACCAAACT
* *
63246779 TGAACC-CGAACCCTAAACACTAAACT
1 TGAACCTTGAA-CCTAAACACCAAACT
63246805 TCGAACCTTGAACCTAAAC
1 T-GAACCTTGAACCTAAAC
63246824 TCAAACCCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 8 0.21
27 20 0.53
28 10 0.26
ACGTcount: A:0.38, C:0.34, G:0.08, T:0.19
Consensus pattern (26 bp):
TGAACCTTGAACCTAAACACCAAACT
Found at i:63246854 original size:12 final size:13
Alignment explanation
Indices: 63246815--63246852 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
63246805 TCGAACCTTG
63246815 AACCTAAA-CTCA
1 AACCTAAACCTCA
*
63246827 AACCCAAACC-CA
1 AACCTAAACCTCA
63246839 AACCTAAACCTCA
1 AACCTAAACCTCA
63246852 A
1 A
63246853 CCCCGAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.50, C:0.39, G:0.00, T:0.11
Consensus pattern (13 bp):
AACCTAAACCTCA
Found at i:63252277 original size:3 final size:3
Alignment explanation
Indices: 63252269--63252293 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63252259 CATATGCATG
63252269 TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT T
63252294 ATTATTAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TGT
Found at i:63253080 original size:2 final size:2
Alignment explanation
Indices: 63253073--63253108 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
63253063 GATTATTTAC
63253073 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
63253109 ATATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:63255452 original size:10 final size:11
Alignment explanation
Indices: 63255427--63255461 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
63255417 TATTATTATA
63255427 AAAAAATTAAT
1 AAAAAATTAAT
63255438 AAAAAATTAAT
1 AAAAAATTAAT
63255449 AAAAAATT-AT
1 AAAAAATTAAT
63255459 AAA
1 AAA
63255462 TATATTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (11 bp):
AAAAAATTAAT
Found at i:63255468 original size:22 final size:21
Alignment explanation
Indices: 63255421--63255472 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
63255411 AAACCGTATT
63255421 ATTATAAAAAAATTAATAAAAA
1 ATTAT-AAAAAATTAATAAAAA
*
63255443 ATTAATAAAAAATT-ATAAATAT
1 ATT-ATAAAAAATTAATAAA-AA
63255465 ATTATAAA
1 ATTATAAA
63255473 TAAAAGGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 10 0.37
22 15 0.56
23 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTATAAAAAATTAATAAAAA
Found at i:63260914 original size:195 final size:193
Alignment explanation
Indices: 63260569--63261519 Score: 702
Period size: 195 Copynumber: 4.9 Consensus size: 193
63260559 AATTTATTTC
* * *
63260569 AATTTCGCATTAGTTTTT-GTTATTTTTCTTTAGATTTCTATGATTGTTTATGTTATTTGATTGA
1 AATTTTGCAGTAGTTTTTGGTT-TTTTTCTTTAGA-TTCTATGATAGTTTATGTTATTTGA-TGA
** * *
63260633 ATGGGCTTTTGTTTTCCATTGAA-TATGCTTATTTTAGATCTTTAACTTGGTGGGATTACAAGAA
63 ATGGGCTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCTTTAACTTGGTGAGATTACAAGAA
* * *
63260697 ACTTGTCATGGGTAAC-CTTAATATGTTGAAGCTTGCAAAGAGACTAAAATTAATGGGGTTTTGT
128 AATTGTGATGGGT-ACTCTTAATATGTTGAGGCTTGCAAAGAGACTAAAATTAATGGGG-TTTGT
*
63260761 GTC
191 GTA
* * *
63260764 AGTTTTGCAGTAGTTTTTGGTTTTTTTCTTTACACTTCTATGGTAGTTTATGTTATTTGATAGAA
1 AATTTTGCAGTAGTTTTTGGTTTTTTTCTTTAGA-TTCTATGATAGTTTATGTTATTTGAT-GAA
* * *
63260829 TGGGGTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCATTAACTTGGTGACATTACAAGAAA
64 TGGGCTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCTTTAACTTGGTGAGATTACAAGAAA
* * *
63260894 TTTGTGATGGG-ACTCTTAATATGTTGAGGCTTGCAAAGAGAGTGAAATTAATGGGGTTTGTGTA
129 ATTGTGATGGGTACTCTTAATATGTTGAGGCTTGCAAAGAGACTAAAATTAATGGGGTTTGTGTA
* * * *
63260958 AATTTTGCATTAGTTTTTGTTTTTTTTCTTTAGATT-T-T-AT-GTTTAAGAATACTATTCGAGT
1 AATTTTGCAGTAGTTTTTGGTTTTTTTCTTTAGATTCTATGATAGTTTATG--T--TATTTGA-T
* * * *
63261019 TAATGGGTTTTTGTTTTTTATTGAATTATGCTTATTTGAGATCTTTAACTTAGTGAGATTACAAG
61 GAATGGGCTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCTTTAACTTGGTGAGATTACAAG
* * * * ** * * * *
63261084 AAAAATGTGATGGGTACTATTGATATGTTGGGGCTTGCAAAGAGTGTGAATTTAAT-GGTTTTTT
126 AAAATTGTGATGGGTACTCTTAATATGTTGAGGCTTGCAAAGAGACTAAAATTAATGGGGTTTGT
63261148 GTA
191 GTA
* * * ** * * **** **
63261151 TTGAA-TTTGTATTAGGTTTTGGGGGTTTTTCTTTAGATTTTATGTTTAACAAAATGGTTCAAAT
1 ---AATTTTGCAGTA-GTTTTTGGTTTTTTTCTTTAGATTCTATG-AT-AGTTTAT-GTT-ATTT
* * * *
63261215 --TG-ATGGGTTTTTGTTATTGT-TTGAATTATTGCTTATTTGAGATCCTTAACTTGGTGAGATT
58 GATGAATGGGCTTTTGTT-TTTTATTGAATTA-TGCTTATTTAAGATCTTTAACTTGGTGAGATT
* * * * ** * **
63261276 ACAAGAAAAATGTGATGGGTACTATTAATATGTTGGGGCTTGTAAAGAGTGTAAAATTAGTGGTT
121 ACAAGAAAATTGTGATGGGTACTCTTAATATGTTGAGGCTTGCAAAGAGACTAAAATTAATGGGG
* *
63261341 TTTGTATCG
186 TTTGTGT-A
** * * * ** * ** *
63261350 AA-TTCACATTAGGTTTTGGTGTTTTTCTTTACCTT-T-T-AT-GTTTAACGAAACCATTCGAGT
1 AATTTTGCAGTAGTTTTTGGTTTTTTTCTTTAGATTCTATGATAGTTT-ATG---TTATTTGA-T
* * * ** * * *
63261410 TAATGGGTTTTTGTTATTGGTTGAATTATGTTTATTTGAGATCCTTAACTTGGTGA-AGTTACAA
61 GAATGGGCTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCTTTAACTTGGTGAGA-TTACAA
* *
63261474 GACAAA-TGTGATGGGTACTCTTAACATGTTGGGGCTTGCAAAGAGA
125 GA-AAATTGTGATGGGTACTCTTAATATGTTGAGGCTTGCAAAGAGA
63261520 GTTGGGGCCA
Statistics
Matches: 622, Mismatches: 97, Indels: 75
0.78 0.12 0.09
Matches are distributed among these distances:
189 7 0.01
190 2 0.00
191 4 0.01
192 1 0.00
193 90 0.14
194 151 0.24
195 161 0.26
196 101 0.16
197 91 0.15
198 8 0.01
199 1 0.00
200 2 0.00
201 1 0.00
202 1 0.00
203 1 0.00
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.45
Consensus pattern (193 bp):
AATTTTGCAGTAGTTTTTGGTTTTTTTCTTTAGATTCTATGATAGTTTATGTTATTTGATGAATG
GGCTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCTTTAACTTGGTGAGATTACAAGAAAAT
TGTGATGGGTACTCTTAATATGTTGAGGCTTGCAAAGAGACTAAAATTAATGGGGTTTGTGTA
Found at i:63261291 original size:197 final size:192
Alignment explanation
Indices: 63260632--63261518 Score: 865
Period size: 194 Copynumber: 4.6 Consensus size: 192
63260622 TATTTGATTG
* ** * * *
63260632 AATGGGCTTTTGTTTTCCATTGAA-TATGCTTATTTTAGATCTTTAACTTGGTGGGATTACAAGA
1 AATGGGTTTTTGTTTTGTATTGAATTATGCTTATTTGAGATCCTTAACTTGGTGAGATTACAAGA
** * * ** ** * *
63260696 AACTTGTCATGGGTAAC-CTTAATATGTTGAAGCTTGCAAAGAGACTAAAATTAATGGGGTTTTG
66 AAAATGTGATGGGT-ACTATTAATATGTTGGGGCTTGCAAAGAGTGTGAAATTAAT-GGTTTTTG
* * * * * * * * * *** *
63260760 TGTCAGTTTTGCAGTAGTTTTTGGTTTTTTTCTTTACACTTCTATGGTAGTT--TATGTTATTTG
129 TATGA-ATTTGCATTAGGTTTTGGTGTTTTTCTTTAGA-TTTTAT-GT--TTAACAAAATATTCG
*
63260823 A-TAG
189 AGT-T
* * * * *
63260827 AATGGGGTTTTGTTTTTTATTGAATTATGCTTATTTAAGATCATTAACTTGGTGACATTACAAGA
1 AATGGGTTTTTGTTTTGTATTGAATTATGCTTATTTGAGATCCTTAACTTGGTGAGATTACAAGA
** * * * ** *
63260892 AATTTGTGATGGG-ACTCTTAATATGTTGAGGCTTGCAAAGAGAGTGAAATTAATGGGGTTTGTG
66 AAAATGTGATGGGTACTATTAATATGTTGGGGCTTGCAAAGAGTGTGAAATTAATGGTTTTTGTA
* * * * * *
63260956 TAAATTTTGCATTAGTTTTTGTTTTTTTTCTTTAGATTTTATGTTTAAGAATACTATTCGAGTT
131 TGAA-TTTGCATTAGGTTTTGGTGTTTTTCTTTAGATTTTATGTTTAACAA-AATATTCGAGTT
* * *
63261020 AATGGGTTTTTGTTTTTTATTGAATTATGCTTATTTGAGATCTTTAACTTAGTGAGATTACAAGA
1 AATGGGTTTTTGTTTTGTATTGAATTATGCTTATTTGAGATCCTTAACTTGGTGAGATTACAAGA
* *
63261085 AAAATGTGATGGGTACTATTGATATGTTGGGGCTTGCAAAGAGTGTGAATTTAATGGTTTTTTGT
66 AAAATGTGATGGGTACTATTAATATGTTGGGGCTTGCAAAGAGTGTGAAATTAATGG-TTTTTGT
* * * * *
63261150 ATTGAATTTGTATTAGGTTTTGGGGGTTTTTCTTTAGATTTTATGTTTAACAAAATGGTTCAAAT
130 A-TGAATTTGCATTAGGTTTT-GGTGTTTTTCTTTAGATTTTATGTTTAACAAAAT-ATTCGAGT
63261215 T
192 T
*
63261216 GATGGGTTTTTGTTATTGT-TTGAATTATTGCTTATTTGAGATCCTTAACTTGGTGAGATTACAA
1 AATGGGTTTTTGTT-TTGTATTGAATTA-TGCTTATTTGAGATCCTTAACTTGGTGAGATTACAA
* * *
63261280 GAAAAATGTGATGGGTACTATTAATATGTTGGGGCTTGTAAAGAGTGTAAAATTAGTGGTTTTTG
64 GAAAAATGTGATGGGTACTATTAATATGTTGGGGCTTGCAAAGAGTGTGAAATTAATGGTTTTTG
** ** **
63261345 TATCGAATTCACATTAGGTTTTGGTGTTTTTCTTTACCTTTTATGTTTAACGAAACCATTCGAGT
129 TAT-GAATTTGCATTAGGTTTTGGTGTTTTTCTTTAGATTTTATGTTTAAC-AAAATATTCGAGT
63261410 T
192 T
* *
63261411 AATGGGTTTTTGTTATTG-GTTGAATTATGTTTATTTGAGATCCTTAACTTGGTGA-AGTTACAA
1 AATGGGTTTTTGTT-TTGTATTGAATTATGCTTATTTGAGATCCTTAACTTGGTGAGA-TTACAA
* * *
63261474 GACAAATGTGATGGGTACTCTTAACATGTTGGGGCTTGCAAAGAG
64 GAAAAATGTGATGGGTACTATTAATATGTTGGGGCTTGCAAAGAG
63261519 AGTTGGGGCC
Statistics
Matches: 597, Mismatches: 77, Indels: 37
0.84 0.11 0.05
Matches are distributed among these distances:
190 2 0.00
192 3 0.01
193 83 0.14
194 154 0.26
195 134 0.22
196 130 0.22
197 91 0.15
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.44
Consensus pattern (192 bp):
AATGGGTTTTTGTTTTGTATTGAATTATGCTTATTTGAGATCCTTAACTTGGTGAGATTACAAGA
AAAATGTGATGGGTACTATTAATATGTTGGGGCTTGCAAAGAGTGTGAAATTAATGGTTTTTGTA
TGAATTTGCATTAGGTTTTGGTGTTTTTCTTTAGATTTTATGTTTAACAAAATATTCGAGTT
Found at i:63275145 original size:21 final size:21
Alignment explanation
Indices: 63275087--63275173 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
63275077 CCTGATCAAT
* *
63275087 ATACAACACAT-AAGTGCCTA
1 ATACGACACATAAAGTGCCTG
* ** *
63275107 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
63275128 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCT--G
63275151 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
63275172 AT
1 AT
63275174 CGGCAAAGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
20 8 0.15
21 26 0.47
23 21 0.38
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:63275169 original size:44 final size:41
Alignment explanation
Indices: 63275087--63275173 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
63275077 CCTGATCAAT
* *
63275087 ATACAACACATAAGTGCCTAAAACGACACACGAGGTGCCTG
1 ATACAACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
* * *
63275128 ATACGACACATAAAGTGCCTGAGATACGACACATAAAGTGCCTG
1 ATACAACACAT-AAGTGCCT-A-AAACGACACACAAAGTGCCTG
63275172 AT
1 AT
63275174 CGGCAAAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 10 0.26
42 8 0.21
43 1 0.03
44 19 0.50
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.17
Consensus pattern (41 bp):
ATACAACACATAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:63276266 original size:30 final size:29
Alignment explanation
Indices: 63276223--63276281 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
63276213 TTTTCTTCCC
63276223 CTGTTTTCGTCTC-TTTCTCTGTTTCTTTT
1 CTGTTTTCGTCTCTTTTCTCT-TTTCTTTT
* *
63276252 CTGTTCTTCTTCTCTTTTTTCTTTTCTTTT
1 CTGTT-TTCGTCTCTTTTCTCTTTTCTTTT
63276282 ATTTCATTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 5 0.19
30 15 0.58
31 6 0.23
ACGTcount: A:0.00, C:0.24, G:0.07, T:0.69
Consensus pattern (29 bp):
CTGTTTTCGTCTCTTTTCTCTTTTCTTTT
Found at i:63276276 original size:5 final size:5
Alignment explanation
Indices: 63276234--63276306 Score: 51
Period size: 5 Copynumber: 14.2 Consensus size: 5
63276224 TGTTTTCGTC
* *
63276234 TCTTT CTCTGTT TCTTT TCTGT TCTTCT TCTCT T-TTT TCTTT TCTTT
1 TCTTT -TCT-TT TCTTT TCTTT TCTT-T TCTTT TCTTT TCTTT TCTTT
* * *
63276281 T-ATT TCATT TGTTT TCTTT TACTTT T
1 TCTTT TCTTT TCTTT TCTTT T-CTTT T
63276307 TGTTATAATA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
4 6 0.11
5 31 0.57
6 15 0.28
7 2 0.04
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.73
Consensus pattern (5 bp):
TCTTT
Found at i:63276418 original size:3 final size:3
Alignment explanation
Indices: 63276405--63276441 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
63276395 TATTTATTTC
*
63276405 ATA AT- ATA ATA ATA ATA ATA ATA ATA AT- TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
63276442 TATTTTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 3 0.10
3 27 0.90
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:63276421 original size:11 final size:11
Alignment explanation
Indices: 63276405--63276478 Score: 58
Period size: 11 Copynumber: 6.3 Consensus size: 11
63276395 TATTTATTTC
63276405 ATAATATAATA
1 ATAATATAATA
63276416 ATAATAATAATA
1 ATAAT-ATAATA
*
63276428 ATAATTTAATA
1 ATAATATAATA
* * *
63276439 ATATATTTTTATTTC
1 ATA-A--TATA-ATA
63276454 ATAATATAATA
1 ATAATATAATA
*
63276465 ATAATTTAATA
1 ATAATATAATA
63276476 ATA
1 ATA
63276479 TATTTTAACA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
11 27 0.53
12 15 0.29
14 5 0.10
15 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (11 bp):
ATAATATAATA
Found at i:63278564 original size:15 final size:15
Alignment explanation
Indices: 63278544--63278584 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
63278534 AATAGGTAGG
*
63278544 GGACCGGACTAGATC
1 GGACCGGACTAGACC
*
63278559 GGACCGGACTGGACC
1 GGACCGGACTAGACC
63278574 GGACCGG-CTAG
1 GGACCGGACTAG
63278585 TGGCTAGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 3 0.13
15 20 0.87
ACGTcount: A:0.22, C:0.29, G:0.39, T:0.10
Consensus pattern (15 bp):
GGACCGGACTAGACC
Found at i:63283109 original size:48 final size:48
Alignment explanation
Indices: 63283053--63283146 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
63283043 AGGGAATTCT
* * *
63283053 GTTGAATCCTTTATTGTTGCG-AATT-GAGCTAACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTG-GAAATTAG-GCTAACTTAGGCATTTTTACG
*
63283101 GTTGAATCCATTATTGGTGGAAATTAGGCTGACTTAGGCATTTTTA
1 GTTGAATCCATTATTGGTGGAAATTAGGCTAACTTAGGCATTTTTA
63283147 AGCCAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 1 0.03
48 38 0.95
49 1 0.03
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGGAAATTAGGCTAACTTAGGCATTTTTACG
Found at i:63285625 original size:48 final size:48
Alignment explanation
Indices: 63285569--63285662 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
63285559 AGGGAATTCT
* * *
63285569 GTTGAATCCTTTATTGTTGCG-AATT-GAGCTAACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTG-GAAATTAG-GCTAACTTAGGCATTTTTACG
*
63285617 GTTGAATCCATTATTGGTGGAAATTAGGCTGACTTAGGCATTTTTA
1 GTTGAATCCATTATTGGTGGAAATTAGGCTAACTTAGGCATTTTTA
63285663 AGCCAAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 1 0.03
48 38 0.95
49 1 0.03
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGGAAATTAGGCTAACTTAGGCATTTTTACG
Found at i:63288244 original size:31 final size:30
Alignment explanation
Indices: 63288209--63288283 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
63288199 TTATAAAATA
* *
63288209 ATCACTCAATTATTAGCAATTTTCT-TTTTTT
1 ATCACTCAACTATT--CAATTTTATCTTTTTT
63288240 ATCACTCAACTATTCAATTTTATCTTTTTT
1 ATCACTCAACTATTCAATTTTATCTTTTTT
*
63288270 AGTCACCCAACTAT
1 A-TCACTCAACTAT
63288284 CTTGGGTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 8 0.21
30 7 0.18
31 24 0.62
ACGTcount: A:0.28, C:0.21, G:0.03, T:0.48
Consensus pattern (30 bp):
ATCACTCAACTATTCAATTTTATCTTTTTT
Found at i:63289247 original size:21 final size:21
Alignment explanation
Indices: 63289214--63289253 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63289204 AAATAATAAA
63289214 TAATAAAAATCGAATTAAATT
1 TAATAAAAATCGAATTAAATT
* *
63289235 TAATTAAATTCGAATTAAA
1 TAATAAAAATCGAATTAAA
63289254 CTCAACTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (21 bp):
TAATAAAAATCGAATTAAATT
Found at i:63300589 original size:20 final size:19
Alignment explanation
Indices: 63300546--63300591 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
63300536 AGGGAGAGAA
63300546 GGGGA-AGAGAGGGGGAGG
1 GGGGAGAGAGAGGGGGAGG
63300564 GAGGGAGAGAGAGTGTGGG-GG
1 G-GGGAGAGAGAG-G-GGGAGG
63300585 GGGGAGA
1 GGGGAGA
63300592 AGAAGAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.04
19 4 0.17
20 12 0.50
21 4 0.17
22 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.70, T:0.04
Consensus pattern (19 bp):
GGGGAGAGAGAGGGGGAGG
Found at i:63303616 original size:59 final size:59
Alignment explanation
Indices: 63303524--63303640 Score: 207
Period size: 59 Copynumber: 2.0 Consensus size: 59
63303514 CATGGGGCGA
* *
63303524 CAAGAAACTCGTTGTTGATCATTTTAAGATATTTTGATGCATTGCATATGCACATATAG
1 CAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATAG
*
63303583 CAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGTATTGCATATGCACATATA
1 CAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATA
63303641 TCGAATGAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (59 bp):
CAAGAAACCCGTTGTTGATCATTTTAAGATATTTGGATGCATTGCATATGCACATATAG
Found at i:63303951 original size:3 final size:3
Alignment explanation
Indices: 63303943--63303991 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
63303933 ATCAACATTT
*
63303943 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA ATA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
63303991 A
1 A
63303992 AGGAGATATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:63309373 original size:122 final size:122
Alignment explanation
Indices: 63309156--63309387 Score: 394
Period size: 122 Copynumber: 1.9 Consensus size: 122
63309146 CTCGAATATT
*
63309156 TTTTCCTTCGAAACCCTTGGAGAACTTTAAATCAATCAAACAAAAAGACAAGATAGCTTATAGCA
1 TTTTCCTTCGAAACCCTTGGAGAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
* *
63309221 TGAAAGAAAGTTATTCTAAGCTATTCATTCTTCATATAACCCAAAATTTTAACTAGG
66 TGAAAGAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTTTAACTAGG
* * *
63309278 TTTTCCTTTGAAACCCTTGGATAACTTTAAATCAACCAAACAAAAAGACAGGATAGCTTATAGCA
1 TTTTCCTTCGAAACCCTTGGAGAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
63309343 TGAAA-AAATGCTATTCTAAGCTATGCATTCTTCATATAACCCAAA
66 TGAAAGAAA-GCTATTCTAAGCTATGCATTCTTCATATAACCCAAA
63309388 GTTCTGACTA
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
121 3 0.03
122 100 0.97
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (122 bp):
TTTTCCTTCGAAACCCTTGGAGAACTTTAAATCAACCAAACAAAAAGACAAGATAGCTTATAGCA
TGAAAGAAAGCTATTCTAAGCTATGCATTCTTCATATAACCCAAAATTTTAACTAGG
Found at i:63311169 original size:26 final size:27
Alignment explanation
Indices: 63311121--63311173 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
63311111 TTTCCTCGCG
*
63311121 ATTTTTAACATTTTTAGTTGAAAAAAT
1 ATTTTTAACATTTTTAGTAGAAAAAAT
*
63311148 ATTTTTAGCATTTTTAG-AGAAAAAAT
1 ATTTTTAACATTTTTAGTAGAAAAAAT
63311174 CGTATGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (27 bp):
ATTTTTAACATTTTTAGTAGAAAAAAT
Found at i:63324814 original size:28 final size:28
Alignment explanation
Indices: 63324761--63324828 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 28
63324751 TGGAATTCTA
63324761 ATTAAACCCTCTAAAACTTTTAAAAAT-TTT
1 ATTAAACCCT-T--AACTTTTAAAAATCTTT
* *
63324791 AATTAGACCCTTAACTTTTGAAAATCTTT
1 -ATTAAACCCTTAACTTTTAAAAATCTTT
63324820 ATTAAACCC
1 ATTAAACCC
63324829 CTAAGAGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 20 0.61
29 3 0.09
30 1 0.03
31 9 0.27
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (28 bp):
ATTAAACCCTTAACTTTTAAAAATCTTT
Found at i:63327599 original size:13 final size:15
Alignment explanation
Indices: 63327581--63327626 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
63327571 TCTATATATT
63327581 TATAACA-AA-TTAA
1 TATAACAGAAGTTAA
63327594 TATAACAGTAAGTTAA
1 TATAACAG-AAGTTAA
*
63327610 TATAACACCAAGTTAA
1 TATAACA-GAAGTTAA
63327626 T
1 T
63327627 TAAAGAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.25
15 2 0.07
16 19 0.68
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (15 bp):
TATAACAGAAGTTAA
Found at i:63327611 original size:16 final size:16
Alignment explanation
Indices: 63327590--63327626 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
63327580 TTATAACAAA
**
63327590 TTAATATAACAGTAAG
1 TTAATATAACACCAAG
63327606 TTAATATAACACCAAG
1 TTAATATAACACCAAG
63327622 TTAAT
1 TTAAT
63327627 TAAAGAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (16 bp):
TTAATATAACACCAAG
Found at i:63331456 original size:15 final size:15
Alignment explanation
Indices: 63331436--63331465 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63331426 TATTTTTGCT
63331436 ATGTTAATCTCATTA
1 ATGTTAATCTCATTA
63331451 ATGTTAATCTCATTA
1 ATGTTAATCTCATTA
63331466 TAAATACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (15 bp):
ATGTTAATCTCATTA
Found at i:63332820 original size:18 final size:17
Alignment explanation
Indices: 63332806--63332849 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
63332796 GTAAAAATTG
63332806 AAATTAAATTAAAAAAT
1 AAATTAAATTAAAAAAT
* *
63332823 AAATTTAAATTGAAAACT
1 AAA-TTAAATTAAAAAAT
63332841 CAAATTAAA
1 -AAATTAAA
63332850 GAAAGCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (17 bp):
AAATTAAATTAAAAAAT
Found at i:63335236 original size:168 final size:169
Alignment explanation
Indices: 63334998--63335329 Score: 540
Period size: 168 Copynumber: 2.0 Consensus size: 169
63334988 CCCTCGCAGA
* * * * *
63334998 TTGTTTTTGGGTCATTTTCTGACATGCCAGCTGACGTATTCTATGATTCAACATTCGACGAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
* *
63335063 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCGTCCACCGGCACCTTCAGCACCGGCAGGGGCTTC
66 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC
63335128 TGAAAATGTGGCCAAAGATGATGAGAAA-CAAAACAAGC
131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAAACAAGC
* * *
63335166 TTGTTTTTGGGTCATTTGGTGACATGTCAGGTCACGTATTCTATCATTCAACATTCAACCAAGCA
1 TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
** *
63335231 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACTTGCACCTCCAGCACCGGCAGGGGCTTT
66 CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC
63335296 TGAAAATGTGGCCAAAGATGATGAGAAACCAAAA
131 TGAAAATGTGGCCAAAGATGATGAGAAACCAAAA
63335330 AATGATAAAG
Statistics
Matches: 150, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
168 145 0.97
169 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (169 bp):
TTGTTTTTGGGTCATTTGCTGACATGCCAGCTCACGTATTCTATCATTCAACATTCAACCAAGCA
CCACCTTCCAAGGTGGCCCGTGTCTCACCTCCTCCACCGGCACCTCCAGCACCGGCAGGGGCTTC
TGAAAATGTGGCCAAAGATGATGAGAAACCAAAACAAGC
Found at i:63342002 original size:8 final size:8
Alignment explanation
Indices: 63341991--63342053 Score: 56
Period size: 8 Copynumber: 7.5 Consensus size: 8
63341981 TGGTGTGATC
63341991 TTTTTTAA
1 TTTTTTAA
63341999 TTTTTTAA
1 TTTTTTAA
*
63342007 -TTTTTAT
1 TTTTTTAA
63342014 TTTTTTAA
1 TTTTTTAA
* *
63342022 TTTTAAAATAC
1 TTTT---TTAA
63342033 TTTTTTAAA
1 TTTTTT-AA
63342042 TTTTTTAA
1 TTTTTTAA
63342050 TTTT
1 TTTT
63342054 CAAATATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
7 6 0.14
8 25 0.57
9 7 0.16
11 6 0.14
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTTAA
Found at i:63342026 original size:14 final size:15
Alignment explanation
Indices: 63341992--63342025 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
63341982 GGTGTGATCT
63341992 TTTTTAATTTTTTAA
1 TTTTTAATTTTTTAA
*
63342007 TTTTTATTTTTTTAA
1 TTTTTAATTTTTTAA
63342022 TTTT
1 TTTT
63342026 AAAATACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTAATTTTTTAA
Found at i:63342047 original size:28 final size:27
Alignment explanation
Indices: 63342014--63342069 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
63342004 TAATTTTTAT
*
63342014 TTTTTTAATTTTAAAATACTTTTTTAAA
1 TTTTTTAATTTTAAAATA-TTTTTAAAA
*
63342042 TTTTTTAATTTTCAAATATTTTTAAAA
1 TTTTTTAATTTTAAAATATTTTTAAAA
63342069 T
1 T
63342070 AAATTTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 9 0.35
28 17 0.65
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (27 bp):
TTTTTTAATTTTAAAATATTTTTAAAA
Found at i:63343908 original size:8 final size:8
Alignment explanation
Indices: 63343895--63343919 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
63343885 TTTTAAAAAT
63343895 ATTTTAAA
1 ATTTTAAA
63343903 ATTTTAAA
1 ATTTTAAA
63343911 ATTTTAAA
1 ATTTTAAA
63343919 A
1 A
63343920 AATAAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTTTAAA
Found at i:63345830 original size:11 final size:11
Alignment explanation
Indices: 63345810--63345848 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
63345800 TTTTTTAAAA
*
63345810 TTTTAGAATAT
1 TTTTAAAATAT
63345821 TTTTAAAATAT
1 TTTTAAAATAT
* *
63345832 TTTTAAATTTT
1 TTTTAAAATAT
63345843 TTTTAA
1 TTTTAA
63345849 TTTTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:63345888 original size:23 final size:22
Alignment explanation
Indices: 63345835--63345889 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
63345825 AAAATATTTT
63345835 TAAATTTTTTTTAATTTTAAAA
1 TAAATTTTTTTTAATTTTAAAA
**
63345857 TACTTTTTTTTTTAAATTTTAAAA
1 TA-AATTTTTTTT-AATTTTAAAA
63345881 TAAATTTTT
1 TAAATTTTT
63345890 AGTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 2 0.07
23 13 0.48
24 12 0.44
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TAAATTTTTTTTAATTTTAAAA
Found at i:63345888 original size:24 final size:23
Alignment explanation
Indices: 63345835--63345889 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 23
63345825 AAAATATTTT
63345835 TAAA-TTTTTTTTAATTTTAAAA
1 TAAATTTTTTTTTAATTTTAAAA
**
63345857 TACTTTTTTTTTTAAATTTTAAAA
1 TAAATTTTTTTTT-AATTTTAAAA
63345881 TAAATTTTT
1 TAAATTTTT
63345890 AGTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 2 0.07
23 8 0.30
24 17 0.63
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (23 bp):
TAAATTTTTTTTTAATTTTAAAA
Found at i:63346716 original size:91 final size:94
Alignment explanation
Indices: 63346565--63346736 Score: 271
Period size: 91 Copynumber: 1.9 Consensus size: 94
63346555 TTTAAAAGTA
* *
63346565 ATAGTTTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAAGTTTTCCGCAATCCGACT
1 ATAGTTTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAAGTTTTCAGCAATCCGAAT
63346630 GGAT-CTT-CTTTTTTAAGTTTTAAATTG
66 GGATCCTTACTTTTTTAAGTTTTAAATTG
* *
63346657 ATAG-TTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAA-TTTCTTAGTAATCCGAA
1 ATAGTTTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAAGTTT-TCAGCAATCCGAA
63346720 TGGATCCTTACTTTTTT
65 TGGATCCTTACTTTTTT
63346737 TTTCTGTTGA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
90 3 0.04
91 56 0.77
92 7 0.10
93 7 0.10
ACGTcount: A:0.21, C:0.13, G:0.16, T:0.51
Consensus pattern (94 bp):
ATAGTTTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAAGTTTTCAGCAATCCGAAT
GGATCCTTACTTTTTTAAGTTTTAAATTG
Found at i:63346835 original size:111 final size:109
Alignment explanation
Indices: 63346638--63346836 Score: 301
Period size: 111 Copynumber: 1.8 Consensus size: 109
63346628 CTGGATCTTC
* * *
63346638 TTTTTTAAGTTTTAAATTGATAGTTTGTTCTTGAATTTAATCGTATTCCTGGTATTTTTGTGTAA
1 TTTTTTAAGTTTTAAATTGATAGGTTATTCTTGAATTTAATCGTATTCCTGATATTTTTGTGTAA
*
63346703 TTTCTTAGTAATCCGAATGGATCCTTACTTTTTTTTTCTGTTGA
66 TTTCTTAGCAATCCGAATGGATCCTTACTTTTTTTTTCTGTTGA
**
63346747 TTTTTTAAGTTTTAAATT-AGTAGGTTATTCTTGAATTTAATCGCGTATTTTTGATATTTTTGTG
1 TTTTTTAAGTTTTAAATTGA-TAGGTTATTCTTGAATTTAAT--CGTATTCCTGATATTTTTGTG
*
63346811 TAATTTCTTAGCAATCCGACTGGATC
63 TAATTTCTTAGCAATCCGAATGGATC
63346837 GTCATTGAAC
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
108 1 0.01
109 37 0.46
111 42 0.52
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (109 bp):
TTTTTTAAGTTTTAAATTGATAGGTTATTCTTGAATTTAATCGTATTCCTGATATTTTTGTGTAA
TTTCTTAGCAATCCGAATGGATCCTTACTTTTTTTTTCTGTTGA
Found at i:63346877 original size:142 final size:138
Alignment explanation
Indices: 63346712--63346976 Score: 347
Period size: 137 Copynumber: 1.9 Consensus size: 138
63346702 ATTTCTTAGT
* ** *
63346712 AATCCGAATGGATCCTTACTTTTTTTTTCTGTTGATTTTTTAAGTTTTAAATTAGTAGGTTATTC
1 AATCCGAATGGATCCTTAC---TTTTTT-TGTTGATTTTTTAAGTTTAAAATTAACAGGTTATCC
* ** *
63346777 TTGAATTTAATCGCGTA-TTTTT-GATATTTTTGTGTAATTTCTTAGCAATCCGACTGGATCGTC
62 TTGAATTTAAT--CGTATTTTTTAAATACATTTGTGTAATTTCTAAGCAATCCGACTGGATCGTC
63346840 ATTGAACAAATAAA
125 ATTGAACAAATAAA
* * *
63346854 AATCCGACTGGAT-CTTCCTTTTTTTGTTGATTTTTTAAGTTTAAAATTAACAGTTTATCCTTGA
1 AATCCGAATGGATCCTTACTTTTTTTGTTGATTTTTTAAGTTTAAAATTAACAGGTTATCCTTGA
*
63346918 ATTTAATCGTATTTTTTAAATACATTTGTGTAATTTCTAAGGAATCCGACTGGATCGTC
66 ATTTAATCGTATTTTTTAAATACATTTGTGTAATTTCTAAGCAATCCGACTGGATCGTC
63346977 TTTTCTTTTG
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
135 4 0.04
136 5 0.05
137 78 0.72
138 6 0.06
141 4 0.04
142 12 0.11
ACGTcount: A:0.27, C:0.13, G:0.14, T:0.46
Consensus pattern (138 bp):
AATCCGAATGGATCCTTACTTTTTTTGTTGATTTTTTAAGTTTAAAATTAACAGGTTATCCTTGA
ATTTAATCGTATTTTTTAAATACATTTGTGTAATTTCTAAGCAATCCGACTGGATCGTCATTGAA
CAAATAAA
Found at i:63347001 original size:107 final size:105
Alignment explanation
Indices: 63346854--63347149 Score: 328
Period size: 107 Copynumber: 2.7 Consensus size: 105
63346844 AACAAATAAA
* * * * *
63346854 AATCCGACTGGATCTTCCTTTTTTTGTTGATTTTTTAAGTTTAAAATTAACAGTTTATCCTTGAA
1 AATCCGACTGGATCTTCTTTTTTTTGTTGATTTTTCAAGTTTTAAATTAATAGTTTATTCTTGAA
* *
63346919 TTTAATCGTATTTTTTAAATACATTTGTGTAATTTCTAAGG
66 TTTAATCGTATTTTCT-AATACATTTGTGTAATTTCTAAGC
* * *
63346960 AATCCGACTGGATCGTCTTTTCTTTTGTTGATCTTTCAAGTTTTGAATTAATAGTTTATTCTTGA
1 AATCCGACTGGATCTTCTTTT-TTTTGTTGATTTTTCAAGTTTTAAATTAATAGTTTATTCTTGA
* ** *
63347025 ATTAAAAT-GTA-TTTCTAATATTTTTGTGTAATTTCTTAGC
65 ATT-TAATCGTATTTTCTAATACATTTGTGTAATTTCTAAGC
* *
63347065 AATCGGATTGGATCCTTACTTTTTTTTTTGTTGCTGATTTTTTC-AGTTTTAAATTAATAGTTTA
1 AATCCGACTGGAT-CTT-C--TTTTTTTTG-T--TGA-TTTTTCAAGTTTTAAATTAATAGTTTA
63347129 TTCTTGAATTTAATCGTATTT
58 TTCTTGAATTTAATCGTATTT
63347150 CTAGTATTTT
Statistics
Matches: 158, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
105 31 0.20
106 25 0.16
107 44 0.28
108 8 0.05
109 5 0.03
110 3 0.02
111 35 0.22
112 7 0.04
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.51
Consensus pattern (105 bp):
AATCCGACTGGATCTTCTTTTTTTTGTTGATTTTTCAAGTTTTAAATTAATAGTTTATTCTTGAA
TTTAATCGTATTTTCTAATACATTTGTGTAATTTCTAAGC
Found at i:63347129 original size:111 final size:107
Alignment explanation
Indices: 63346854--63347160 Score: 322
Period size: 111 Copynumber: 2.9 Consensus size: 107
63346844 AACAAATAAA
* * * * * *
63346854 AATCCGACTGGATCTTC-CTTTTTTTG-T-TGATTTTTTAAGTTTAAAATTAACAGTTTATCCTT
1 AATCCGACTGGATCGTCTTTTTTTTTGTTGTGATTTTTTCAGTTTTAAATTAATAGTTTATTCTT
* ** *
63346916 GAATTTAATCGTATTTTTTAAATACATTTGTGTAATTTCTAAGG
66 GAATTTAATCGTA-TTTCT-AATATTTTTGTGTAATTTCTAAGC
* * *
63346960 AATCCGACTGGATCGTCTTTTCTTTTG-T-TGA-TCTTTCAAGTTTTGAATTAATAGTTTATTCT
1 AATCCGACTGGATCGTCTTTTTTTTTGTTGTGATTTTTTC-AGTTTTAAATTAATAGTTTATTCT
* *
63347022 TGAATTAAAAT-GTATTTCTAATATTTTTGTGTAATTTCTTAGC
65 TGAATT-TAATCGTATTTCTAATATTTTTGTGTAATTTCTAAGC
* * *
63347065 AATCGGATTGGATCCTTACTTTTTTTTTTGTTGCTGATTTTTTCAGTTTTAAATTAATAGTTTAT
1 AATCCGACTGGAT-CGT-C-TTTTTTTTTGTTG-TGATTTTTTCAGTTTTAAATTAATAGTTTAT
*
63347130 TCTTGAATTTAATCGTATTTCTAGTATTTTT
62 TCTTGAATTTAATCGTATTTCTAATATTTTT
63347161 TTAGCAATCA
Statistics
Matches: 167, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
105 31 0.19
106 26 0.16
107 41 0.25
108 12 0.07
109 1 0.01
110 3 0.02
111 48 0.29
112 5 0.03
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.52
Consensus pattern (107 bp):
AATCCGACTGGATCGTCTTTTTTTTTGTTGTGATTTTTTCAGTTTTAAATTAATAGTTTATTCTT
GAATTTAATCGTATTTCTAATATTTTTGTGTAATTTCTAAGC
Found at i:63350398 original size:106 final size:106
Alignment explanation
Indices: 63350203--63350402 Score: 302
Period size: 106 Copynumber: 1.9 Consensus size: 106
63350193 TTAAAAAAAA
* *
63350203 AAGTTTAAAATTAATAGTTTATCCTTGAATTAGATCGTATTTCTGATATTTTTGTGTAATTTCTT
1 AAGTTTAAAATTAATAGTTTAACCTTGAATTAGATCGTATTTCTGATATTTTAGTGTAATTTCTT
63350268 AGCAATCCGACTGGATCGTCTTTTTCTTTTGTTGATTTTTT
66 AGCAATCCGACTGGATCGTCTTTTTCTTTTGTTGATTTTTT
* * *
63350309 AAGTTTTAAATTAATAGTTTAAGCTTGAATTTA-ATCTTATTTCTGAT-TTTTAGTGTAATTTCT
1 AAGTTTAAAATTAATAGTTTAACCTTGAA-TTAGATCGTATTTCTGATATTTTAGTGTAATTTCT
*
63350372 TAGCAATCCGATTGGATC-T-TTTTT-TTTTGTT
65 TAGCAATCCGACTGGATCGTCTTTTTCTTTTGTT
63350403 TATTCTTGAA
Statistics
Matches: 87, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
102 7 0.08
103 5 0.06
104 1 0.01
105 32 0.37
106 39 0.45
107 3 0.03
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (106 bp):
AAGTTTAAAATTAATAGTTTAACCTTGAATTAGATCGTATTTCTGATATTTTAGTGTAATTTCTT
AGCAATCCGACTGGATCGTCTTTTTCTTTTGTTGATTTTTT
Found at i:63350669 original size:111 final size:111
Alignment explanation
Indices: 63350477--63350787 Score: 423
Period size: 111 Copynumber: 2.8 Consensus size: 111
63350467 CTTACTTTTA
* ** * *
63350477 AGTTTAAAATTAATAGTTTATCCTTTAATTGAATCGTA-GT-TCTGGTATTTTTGTGTAATTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC-TATATCTCTGGTATTTTTGTGTAATTTCT
* *
63350540 TAGCAATTCGACTGGATCGTCTTTTTTCTTGTTGA-TATTTTTGTGT
65 TAGCAATTCGACTGGATCGTCTCTTTTCCTGTTGATTATTTTTGTGT
* *
63350586 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCATATATCTCTGGTATTTTTGTGCAACTTCT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATC-TATATCTCTGGTATTTTTGTGTAATTTCT
* *
63350651 TAGCAATTCGACTGGATCGTCTCTTTTCCTGTTGATTTTTTTTTTGT
65 TAGCAATTCGACTGGATCGTCTCTTTTCCTGTTGATTATTTTTGTGT
*
63350698 ATTTTTAAATTAATAGTTTATCCTAGAATTAAATC-ATATCTCTGGTATTTTTGTGTAATTTCTT
1 AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCTATATCTCTGGTATTTTTGTGTAATTTCTT
* * * * *
63350762 AGTAATCCAACTAGATCCTCTCTTTT
66 AGCAATTCGACTGGATCGTCTCTTTT
63350788 TTTTTTGTTG
Statistics
Matches: 179, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
109 33 0.18
110 49 0.27
111 54 0.30
112 43 0.24
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (111 bp):
AGTTTTAAATTAATAGTTTATCCTAGAATTAAATCTATATCTCTGGTATTTTTGTGTAATTTCTT
AGCAATTCGACTGGATCGTCTCTTTTCCTGTTGATTATTTTTGTGT
Found at i:63351640 original size:344 final size:344
Alignment explanation
Indices: 63351013--63351701 Score: 1369
Period size: 344 Copynumber: 2.0 Consensus size: 344
63351003 GATTTTACTG
63351013 AATTTGCTGTTAATCTAAATACGTATCGGTTTCTACTTTATGAATACTCTATTTTTAACTGTTTT
1 AATTTGCTGTTAATCTAAATACGTATCGGTTTCTACTTTATGAATACTCTATTTTTAACTGTTTT
63351078 TCTTTGACACTGACTTTTTATTTTACTTGTTTAATATATTAATCTAATTTGTCTGCGCTTGTAAT
66 TCTTTGACACTGACTTTTTATTTTACTTGTTTAATATATTAATCTAATTTGTCTGCGCTTGTAAT
63351143 TTGGATCCTTGTATTTTTGTTGTTATTATTATTTTCTTATTTTTACTGAAACCAAAGAAAATCTT
131 TTGGATCCTTGTATTTTTGTTGTTATTATTATTTTCTTATTTTTACTGAAACCAAAGAAAATCTT
63351208 ATTTTATATATCCAAACATAATATTATGGTTTTATGATCATAAACAATGAACACGCCCCATTGTG
196 ATTTTATATATCCAAACATAATATTATGGTTTTATGATCATAAACAATGAACACGCCCCATTGTG
63351273 AAGCTCAACTAGCTGATTTAGGATGTTCTAAAGGCAATGCAAGATGAGCTCTGCTTCATCCTAAA
261 AAGCTCAACTAGCTGATTTAGGATGTTCTAAAGGCAATGCAAGATGAGCTCTGCTTCATCCTAAA
63351338 GATATTGACACATGATGTT
326 GATATTGACACATGATGTT
63351357 AATTTGCTGTTAATCTAAATACGTATCGGTTTCTACTTTATGAATACTCTATTTTTAACTGTTTT
1 AATTTGCTGTTAATCTAAATACGTATCGGTTTCTACTTTATGAATACTCTATTTTTAACTGTTTT
63351422 TCTTTGACACTGACTTTTTATTTTACTTGTTTAATATATTAATCTAATTTGTCTGCGCTTGTAAT
66 TCTTTGACACTGACTTTTTATTTTACTTGTTTAATATATTAATCTAATTTGTCTGCGCTTGTAAT
63351487 TTGGATCCTTGTATTTTTGTTGTTATTATTATTTTCTTATTTTTACTGAAACCAAAGAAAATCTT
131 TTGGATCCTTGTATTTTTGTTGTTATTATTATTTTCTTATTTTTACTGAAACCAAAGAAAATCTT
63351552 ATTTTATATATCCAAACATAATATTATGGTTTTATGATCATAAACAATGAACACGCCCCATTGTG
196 ATTTTATATATCCAAACATAATATTATGGTTTTATGATCATAAACAATGAACACGCCCCATTGTG
*
63351617 AAGCTCAACTAGCTGATTTAGGATGTTCTAAAGGCAATGTAAGATGAGCTCTGCTTCATCCTAAA
261 AAGCTCAACTAGCTGATTTAGGATGTTCTAAAGGCAATGCAAGATGAGCTCTGCTTCATCCTAAA
63351682 GATATTGACACATGATGTT
326 GATATTGACACATGATGTT
63351701 A
1 A
63351702 TACCAGCATA
Statistics
Matches: 344, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
344 344 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.43
Consensus pattern (344 bp):
AATTTGCTGTTAATCTAAATACGTATCGGTTTCTACTTTATGAATACTCTATTTTTAACTGTTTT
TCTTTGACACTGACTTTTTATTTTACTTGTTTAATATATTAATCTAATTTGTCTGCGCTTGTAAT
TTGGATCCTTGTATTTTTGTTGTTATTATTATTTTCTTATTTTTACTGAAACCAAAGAAAATCTT
ATTTTATATATCCAAACATAATATTATGGTTTTATGATCATAAACAATGAACACGCCCCATTGTG
AAGCTCAACTAGCTGATTTAGGATGTTCTAAAGGCAATGCAAGATGAGCTCTGCTTCATCCTAAA
GATATTGACACATGATGTT
Found at i:63358009 original size:44 final size:43
Alignment explanation
Indices: 63357920--63358012 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 43
63357910 AGTCATATAT
* *
63357920 ATTAATTAGTATATGCTTATAATAAACATTGATTTATAAAAAA
1 ATTAATTAGTATATGCTTATAATAAACAATAATTTATAAAAAA
* * *
63357963 ATTAATTAAGTATATGCTTA-AACTAAACAATAATTTGTTAATAA
1 ATTAATT-AGTATATGCTTATAA-TAAACAATAATTTATAAAAAA
63358007 ATTAAT
1 ATTAAT
63358013 CCTTAGTCTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
43 9 0.21
44 34 0.79
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.40
Consensus pattern (43 bp):
ATTAATTAGTATATGCTTATAATAAACAATAATTTATAAAAAA
Done.