Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 212 of 213
Found at i:63720442 original size:2 final size:2
Alignment explanation
Indices: 63720435--63720465 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
63720425 GATTCCTACA
63720435 AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
63720466 TTGTATATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63730585 original size:21 final size:20
Alignment explanation
Indices: 63730561--63730606 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
63730551 TTAAATTTAA
63730561 TTATTAAAATATTTAAAAAGT
1 TTATTAAAATATTTAAAAA-T
* *
63730582 TTATTTTAAATATTTTAAAAT
1 TTA-TTAAAATATTTAAAAAT
63730603 TTAT
1 TTAT
63730607 GAATAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 7 0.32
22 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
TTATTAAAATATTTAAAAAT
Found at i:63747011 original size:73 final size:73
Alignment explanation
Indices: 63746892--63747077 Score: 336
Period size: 73 Copynumber: 2.5 Consensus size: 73
63746882 TATTATTATT
* *
63746892 TGGATGTAATGATGTAACTTAGTTCTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
63746957 ACTTTAAG
66 ACTTTAAG
*
63746965 TGGATGTAATGATAAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
*
63747030 ATTTTAAG
66 ACTTTAAG
63747038 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
63747078 GTCAAGTTGT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ACTTTAAG
Found at i:63756361 original size:18 final size:19
Alignment explanation
Indices: 63756322--63756362 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
63756312 GTTATTTGGA
*
63756322 TATTGTATAATTCTTGTTT
1 TATTGTATAATTCTTGTAT
63756341 TATTGT-TAATT-TTGCTAT
1 TATTGTATAATTCTTG-TAT
63756359 TATT
1 TATT
63756363 TTAGATAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 3 0.15
18 11 0.55
19 6 0.30
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTGTAT
Found at i:63757899 original size:43 final size:45
Alignment explanation
Indices: 63757851--63757935 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
63757841 TCACTTATTT
*
63757851 CATAGGTTTACATTGTA-TT-AAAAAAAAAAAACTTGTATCATCA
1 CATAGGTTTACATTGTATTTAAAAAAAAAAAAACTTGGATCATCA
* *
63757894 CATAGGTTTCCTTTGTATTTAAAAAAAAAAAAACTTGGATCA
1 CATAGGTTTACATTGTATTTAAAAAAAAAAAAACTTGGATCA
63757936 CTACATGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 15 0.41
44 2 0.05
45 20 0.54
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.33
Consensus pattern (45 bp):
CATAGGTTTACATTGTATTTAAAAAAAAAAAAACTTGGATCATCA
Found at i:63759129 original size:29 final size:29
Alignment explanation
Indices: 63759097--63759182 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 29
63759087 CTTTTTTTAA
63759097 TCACTCAACTATGAATTTTTTAAATTTGG
1 TCACTCAACTATGAATTTTTTAAATTTGG
* * * ***
63759126 TCACTTAATTATGGATTTGTTTCTTTTTGG
1 TCACTCAACTATGAATTT-TTTAAATTTGG
* **
63759156 TCACCCAACTATGTGTTATTTTAAATT
1 TCACTCAACTATGAATT-TTTTAAATT
63759183 GGTTACCCTA
Statistics
Matches: 41, Mismatches: 14, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
29 15 0.37
30 25 0.61
31 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.49
Consensus pattern (29 bp):
TCACTCAACTATGAATTTTTTAAATTTGG
Found at i:63765839 original size:116 final size:118
Alignment explanation
Indices: 63765647--63765858 Score: 322
Period size: 116 Copynumber: 1.8 Consensus size: 118
63765637 TTTGAAAAAC
* * *
63765647 GAAAACGCGGGAGAGTTTTGAATTTTTTTTGTTTTGTTTGATGGGTTTAAATCTTCTTCTAATCC
1 GAAAACGCGGGAGAGCTTTGAA-TTTTTTTGTTTTGTTTGATAGGTTCAAATCTTCTTCTAATCC
* *
63765712 CTTTGGTTTTTTAATATTTAAAATTTAGTCCCTCTATTTTTAATATGGAGGAAA
65 CTGTGATTTTTTAATATTTAAAATTTAGTCCCTCTATTTTTAATATGGAGGAAA
*
63765766 GAAAACGCGGGAGAGCTTTGAA-TTTTTT-TTTTGTTTTATAGG-TCAAACTCTTCTTCTAATCC
1 GAAAACGCGGGAGAGCTTTGAATTTTTTTGTTTTGTTTGATAGGTTCAAA-TCTTCTTCTAATCC
*
63765828 CTGTGATTTTTTAGTATTTAAAATTTAGTCC
65 CTGTGATTTTTTAATATTTAAAATTTAGTCC
63765859 TTTTTTTTAA
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
115 4 0.05
116 54 0.64
117 6 0.07
119 21 0.25
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (118 bp):
GAAAACGCGGGAGAGCTTTGAATTTTTTTGTTTTGTTTGATAGGTTCAAATCTTCTTCTAATCCC
TGTGATTTTTTAATATTTAAAATTTAGTCCCTCTATTTTTAATATGGAGGAAA
Found at i:63767228 original size:56 final size:57
Alignment explanation
Indices: 63767167--63767281 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
63767157 GGTATCAATA
*
63767167 TACGAAAAAAATTAAAA-AAAATTTTGGGTGCTGGCCTGTCAATGGCAGGCACCCAG
1 TACGAAAAAAAGTAAAATAAAATTTTGGGTGCTGGCCTGTCAATGGCAGGCACCCAG
**** * * * *
63767223 TACGAAAAAAAGTAAAATTTTTTTTTTGGTGTTGGCCTGTCAATGGCCGGCACCTAG
1 TACGAAAAAAAGTAAAATAAAATTTTGGGTGCTGGCCTGTCAATGGCAGGCACCCAG
63767280 TA
1 TA
63767282 TAGTAATTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
56 16 0.33
57 33 0.67
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (57 bp):
TACGAAAAAAAGTAAAATAAAATTTTGGGTGCTGGCCTGTCAATGGCAGGCACCCAG
Found at i:63767529 original size:116 final size:113
Alignment explanation
Indices: 63767300--63767526 Score: 344
Period size: 116 Copynumber: 2.0 Consensus size: 113
63767290 TTTTTTTTTA
63767300 TTTTTGTGTCAGTATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAATTTTGGGTGCTGGCCT
1 TTTTTGTGTCAGTATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAATTTTGGGTGCTGGCCT
*
63767365 GTCAATGGCCGGGACAGGCCAGCACCCAGCACAGTAAAAAAAATTTACTT
66 GTCAATGGCCGGGACAGCCCAGCA-CCAGCACAG-AAAAAAAATTTACTT
63767415 TTTTTAGTGTCAGTATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAATTTTTGGGTGCTGGC
1 TTTTT-GTGTCAGTATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAA-TTTTGGGTGCTGGC
*
63767480 CTGTCAATGGCC-GG-CA-CCCAGCA-CAG----TAAAAAAAATTTACTT
64 CTGTCAATGGCCGGGACAGCCCAGCACCAGCACAGAAAAAAAATTTACTT
63767522 TTTTT
1 TTTTT
63767527 ACTGATACTT
Statistics
Matches: 108, Mismatches: 2, Indels: 12
0.89 0.02 0.10
Matches are distributed among these distances:
107 20 0.19
112 3 0.03
114 6 0.06
115 7 0.06
116 46 0.43
117 26 0.24
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.28
Consensus pattern (113 bp):
TTTTTGTGTCAGTATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAATTTTGGGTGCTGGCCT
GTCAATGGCCGGGACAGCCCAGCACCAGCACAGAAAAAAAATTTACTT
Found at i:63767940 original size:20 final size:20
Alignment explanation
Indices: 63767915--63767981 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
63767905 CCTTTTCTAT
63767915 TTAAAATATAATTTTAAAAA
1 TTAAAATATAATTTTAAAAA
**
63767935 TTAAAATATCAA-AATAATAAA
1 TTAAAATAT-AATTTTAA-AAA
*
63767956 TAAAAAT-TAATTTTAAAAA
1 TTAAAATATAATTTTAAAAA
*
63767975 TCAAAAT
1 TTAAAAT
63767982 CATATAGCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
19 11 0.29
20 16 0.42
21 11 0.29
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (20 bp):
TTAAAATATAATTTTAAAAA
Found at i:63769180 original size:112 final size:114
Alignment explanation
Indices: 63769001--63769228 Score: 352
Period size: 112 Copynumber: 2.0 Consensus size: 114
63768991 TCAATCGATA
* * * *
63769001 ACCTTATCCCACTTACCATAATCAAAATCATAGATCAAAACAGCAGATATAACACATCTTAATCA
1 ACCTTATCCCACTCACCACAATCAAAACCATAGATC-AAACAGCAGATATAACACATCTTAACCA
*
63769066 TATGCAAAGATGAAAAATGT-CTTCAGGGGCCAGCTGATGCTTAGATTTT
65 TATGCAAAGATGAAAAATATGCTTCAGGGGCCAGCTGATGCTTAGATTTT
* *
63769115 ACCTTTTCCCACTCACCACAATCAAAACCATAGATC-AACAGCTGATATAACACATCTTAACCAT
1 ACCTTATCCCACTCACCACAATCAAAACCATAGATCAAACAGCAGATATAACACATCTTAACCAT
* *
63769179 ATGCAAAGATGAAAAATATGCTTGAGGGGTCAGCTGATGCTTAGATTTT
66 ATGCAAAGATGAAAAATATGCTTCAGGGGCCAGCTGATGCTTAGATTTT
63769228 A
1 A
63769229 GCTTCGGGTA
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
112 44 0.42
113 28 0.27
114 32 0.31
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (114 bp):
ACCTTATCCCACTCACCACAATCAAAACCATAGATCAAACAGCAGATATAACACATCTTAACCAT
ATGCAAAGATGAAAAATATGCTTCAGGGGCCAGCTGATGCTTAGATTTT
Found at i:63774626 original size:13 final size:13
Alignment explanation
Indices: 63774604--63774633 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63774594 AGCAAGGTTA
*
63774604 TTGTTTAGTTACT
1 TTGTTGAGTTACT
63774617 TTGTTGAGTTACT
1 TTGTTGAGTTACT
63774630 TTGT
1 TTGT
63774634 AATGTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.07, G:0.20, T:0.60
Consensus pattern (13 bp):
TTGTTGAGTTACT
Found at i:63779022 original size:20 final size:19
Alignment explanation
Indices: 63778986--63779028 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
63778976 AATGATTAAA
* *
63778986 AAAAATTAAAGTCATTTTC
1 AAAAATTAAAATAATTTTC
*
63779005 AAAAATTCAAAATAATTTTT
1 AAAAATT-AAAATAATTTTC
63779025 AAAA
1 AAAA
63779029 TTTTATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAATTAAAATAATTTTC
Found at i:63779667 original size:338 final size:339
Alignment explanation
Indices: 63778787--63779727 Score: 1803
Period size: 339 Copynumber: 2.8 Consensus size: 339
63778777 ACCAGGGGAG
*
63778787 AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTTAAAAAATTCGAAAAAAATTCAAATTT
1 AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTTAAAAAAATCGAAAAAAATTCAAATTT
63778852 CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
66 CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
63778917 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
131 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
*
63778982 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAAATTTTATAAAAAAATTCAA
196 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTAT-AAAAAATTCAA
*
63779047 TATTTATAAAAACCTCAGCAAAAAAATCGAAAAAAATTCAAATTTCGAATAACTTGATTCTATTC
260 TATTAATAAAAACCTCAGCAAAAAAATCGAAAAAAATTCAAATTTCGAATAACTTGATTCTATTC
*
63779112 AAATTTCAAATTTCG
325 AAATTTCAAATTTCA
63779127 AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTT-AAAAAATCGAAAAAAATTCAAATTT
1 AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTTAAAAAAATCGAAAAAAATTCAAATTT
*
63779191 CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTAAATTTTACAATTTGAATAACAGATTG
66 CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
63779256 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
131 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
63779321 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTATAAAAAATTCAAT
196 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTATAAAAAATTCAAT
63779386 ATTAATAAAAACCTCAGCAAAAAAATCGAAAAAAATTCAAATTTCGAATAACTTGATTCTATTCA
261 ATTAATAAAAACCTCAGCAAAAAAATCGAAAAAAATTCAAATTTCGAATAACTTGATTCTATTCA
63779451 AATTTCAAATTTCA
326 AATTTCAAATTTCA
*
63779465 AGTAACTAGAGATAGGGAGAGTAAAATTCTATTCGATTTAAAAAAATCGAAAAAAATTCAAATTT
1 AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTTAAAAAAATCGAAAAAAATTCAAATTT
*
63779530 CGAATAACTTGATTTGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
66 CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
63779595 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
131 GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
63779660 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTATAAAAAATTCAAT
196 TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTATAAAAAATTCAAT
63779725 ATT
261 ATT
63779728 TATATTTTAA
Statistics
Matches: 592, Mismatches: 8, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
338 127 0.21
339 426 0.72
340 39 0.07
ACGTcount: A:0.44, C:0.09, G:0.11, T:0.35
Consensus pattern (339 bp):
AGTAACTAGAGATAGGGTGAGTAAAATTCTATTCGATTTAAAAAAATCGAAAAAAATTCAAATTT
CGAATAACTTGATTCGAGTATTGAGTTCGAATTGAGTTGAATTTTACAATTTGAATAACAGATTG
GTATAAATATCATTTTGATTTTGTCAACTTTGAAAGAAAACAAATTGGTCTATCTCAGTAATGAT
TAAAAAAAATTAAAGTCATTTTCAAAAATTCAAAATAATTTTTAAATTTTTATAAAAAATTCAAT
ATTAATAAAAACCTCAGCAAAAAAATCGAAAAAAATTCAAATTTCGAATAACTTGATTCTATTCA
AATTTCAAATTTCA
Found at i:63781674 original size:37 final size:37
Alignment explanation
Indices: 63781620--63781694 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
63781610 AGTAAGCATA
63781620 TCAGTTGTGTAAAGCAGATTGCTTCCTTGCTACACGT
1 TCAGTTGTGTAAAGCAGATTGCTTCCTTGCTACACGT
* *
63781657 TCAGTTGTGTAACGCAGATTGCTTCCTTGCTGCACGT
1 TCAGTTGTGTAAAGCAGATTGCTTCCTTGCTACACGT
63781694 T
1 T
63781695 TTTGAGCAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.36
Consensus pattern (37 bp):
TCAGTTGTGTAAAGCAGATTGCTTCCTTGCTACACGT
Found at i:63782533 original size:24 final size:24
Alignment explanation
Indices: 63782505--63782552 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
63782495 TCATTTATTC
*
63782505 ATCAAGTCATGAATCAAGCTTTCA
1 ATCAAGTCATAAATCAAGCTTTCA
63782529 ATCAAGTCATAAATCAAGCTTTCA
1 ATCAAGTCATAAATCAAGCTTTCA
63782553 TCTTTGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (24 bp):
ATCAAGTCATAAATCAAGCTTTCA
Found at i:63783711 original size:41 final size:41
Alignment explanation
Indices: 63783666--63783747 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
63783656 ATCCATCACA
63783666 TAGCCCCTACTTTTTGTTGTGGTTGGCTCTGCCGATTTGGG
1 TAGCCCCTACTTTTTGTTGTGGTTGGCTCTGCCGATTTGGG
63783707 TAGCCCCTACTTTTTGTTGTGGTTGGCTCTGCCGATTTGGG
1 TAGCCCCTACTTTTTGTTGTGGTTGGCTCTGCCGATTTGGG
63783748 GTCCAATAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.07, C:0.22, G:0.29, T:0.41
Consensus pattern (41 bp):
TAGCCCCTACTTTTTGTTGTGGTTGGCTCTGCCGATTTGGG
Found at i:63793497 original size:41 final size:41
Alignment explanation
Indices: 63793440--63793525 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
63793430 TAAGTATTGA
63793440 ATTTCCAAAGTCATCTGATAGATAAGTTAATGGTAAACCAG
1 ATTTCCAAAGTCATCTGATAGATAAGTTAATGGTAAACCAG
63793481 ATTTCCAAAGTCATCTGATAGATAAGTTAATGGTAAACCAG
1 ATTTCCAAAGTCATCTGATAGATAAGTTAATGGTAAACCAG
63793522 ATTT
1 ATTT
63793526 GCTGCTTTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.31
Consensus pattern (41 bp):
ATTTCCAAAGTCATCTGATAGATAAGTTAATGGTAAACCAG
Found at i:63802072 original size:21 final size:21
Alignment explanation
Indices: 63802040--63802080 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
63802030 AGGCTCGAGG
63802040 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
63802061 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
63802081 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:63811007 original size:24 final size:21
Alignment explanation
Indices: 63810947--63811014 Score: 118
Period size: 21 Copynumber: 3.2 Consensus size: 21
63810937 CAGAAGGAGT
*
63810947 GAGTAGTACTTCGCAGCAGGTG
1 GAGT-GTACTCCGCAGCAGGTG
63810969 GAGTGTACTCCGCAGCAGGTG
1 GAGTGTACTCCGCAGCAGGTG
63810990 GAGTGTACTCCGCAGCAGGTG
1 GAGTGTACTCCGCAGCAGGTG
63811011 GAGT
1 GAGT
63811015 TTGAGTAGAG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
21 41 0.91
22 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.21
Consensus pattern (21 bp):
GAGTGTACTCCGCAGCAGGTG
Found at i:63815128 original size:30 final size:30
Alignment explanation
Indices: 63815092--63815151 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
63815082 TTTTAAACAC
*
63815092 ATATCAGTCGGAGAATCCTTCAATTCTCCG
1 ATATCAGTCGGAGAATCCATCAATTCTCCG
**
63815122 ATATCAGTCGGATTATCCATCAATTCTCCG
1 ATATCAGTCGGAGAATCCATCAATTCTCCG
63815152 CAACTGCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (30 bp):
ATATCAGTCGGAGAATCCATCAATTCTCCG
Found at i:63815982 original size:16 final size:16
Alignment explanation
Indices: 63815961--63815992 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63815951 AGAAAGTAAC
63815961 ATTTTTGGCATCAGAT
1 ATTTTTGGCATCAGAT
63815977 ATTTTTGGCATCAGAT
1 ATTTTTGGCATCAGAT
63815993 GGGGAGTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (16 bp):
ATTTTTGGCATCAGAT
Found at i:63817590 original size:14 final size:14
Alignment explanation
Indices: 63817571--63817600 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63817561 TAAGAAATGG
63817571 AATATAAAATCTGT
1 AATATAAAATCTGT
63817585 AATATAAAATCTGT
1 AATATAAAATCTGT
63817599 AA
1 AA
63817601 ACAAAATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (14 bp):
AATATAAAATCTGT
Found at i:63832401 original size:13 final size:15
Alignment explanation
Indices: 63832371--63832400 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63832361 CTGAAAGAAC
63832371 GACCAAAAAAAGAGA
1 GACCAAAAAAAGAGA
63832386 GACCAAAAAAAGAGA
1 GACCAAAAAAAGAGA
63832401 CAACCCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.13, G:0.20, T:0.00
Consensus pattern (15 bp):
GACCAAAAAAAGAGA
Found at i:63836788 original size:69 final size:69
Alignment explanation
Indices: 63836677--63836816 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
63836667 ATATCTTTAT
63836677 TTTCAGTTTTAGGGATGCTGGACTCACCACTGGCCGTGGCTGGAGAAGAATCCATCAAACTAGCG
1 TTTCAGTTTTAGGGATGCTGGACTCACCACTGGCCGTGGCTGGAGAAGAATCCATCAAACTAGCG
63836742 GCGA
66 GCGA
*
63836746 TTTCAGTTTTAGGGATGCTGGACTCACCGCTGGCCGTGGCTGGAGAAGAATCCATCAAACTAGCG
1 TTTCAGTTTTAGGGATGCTGGACTCACCACTGGCCGTGGCTGGAGAAGAATCCATCAAACTAGCG
63836811 GCGA
66 GCGA
63836815 TT
1 TT
63836817 GCAGCCCTCA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (69 bp):
TTTCAGTTTTAGGGATGCTGGACTCACCACTGGCCGTGGCTGGAGAAGAATCCATCAAACTAGCG
GCGA
Found at i:63845351 original size:21 final size:22
Alignment explanation
Indices: 63845327--63845369 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63845317 TAATCTCTTG
*
63845327 TTTTTATA-TTATGAAATTTAA
1 TTTTTATACTTATCAAATTTAA
*
63845348 TTTTTATACTTTTCAAATTTAA
1 TTTTTATACTTATCAAATTTAA
63845370 AAATATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTATACTTATCAAATTTAA
Found at i:63846369 original size:99 final size:100
Alignment explanation
Indices: 63846129--63846426 Score: 363
Period size: 99 Copynumber: 3.0 Consensus size: 100
63846119 TAGAATTCTG
* * * *
63846129 CTTTTAATTTGATGAATTTATTTTACTCTGAGTGAGCTAGCGGTTGTATTTATGATGATATATTG
1 CTTTTAATTTGATGAATTTA-TTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGATATAGTG
* *
63846194 TTAATTGATTAGAGATTAGTATTTGTTATGATTTTG
65 TTAATTGATTAGAGATTAGTATATGTTATGATTTTA
* * *
63846230 CGTTTAATTTAATGAATTTATTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGTTATAGTGT
1 CTTTTAATTTGATGAATTTATTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGATATAGTGT
* *
63846295 TAATTTG-TTA-ATATTTGT-TATGATT-T-AGTTTTAA
66 TAA-TTGATTAGAGATTAGTATATG-TTATGA-TTTT-A
* *
63846329 CTTTTACTTTGATGAATTTATTTACTCGGAATGAGCTAGCTGTTGTATTTGTGATGATATAGTGT
1 CTTTTAATTTGATGAATTTATTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGATATAGTGT
* * * *
63846394 TAACTGATTACATATTAGTATTTGTTATGATTT
66 TAATTGATTAGAGATTAGTATATGTTATGATTT
63846427 AGTATTGATT
Statistics
Matches: 169, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
97 1 0.01
98 10 0.06
99 74 0.44
100 55 0.33
101 28 0.17
102 1 0.01
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.49
Consensus pattern (100 bp):
CTTTTAATTTGATGAATTTATTTACTCGGAGTGAGCTAGCTGTTGTATTTGTGATGATATAGTGT
TAATTGATTAGAGATTAGTATATGTTATGATTTTA
Found at i:63849305 original size:3 final size:3
Alignment explanation
Indices: 63849297--63849321 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63849287 AGCAGCTGTA
63849297 GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT G
63849322 GAGCTCCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:63853989 original size:18 final size:18
Alignment explanation
Indices: 63853956--63853990 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63853946 AATTTGTTTA
*
63853956 ATTTTACGTTTAATTTGG
1 ATTTTACGGTTAATTTGG
*
63853974 ATTTTACGGTTGATTTG
1 ATTTTACGGTTAATTTG
63853991 ATGAAAGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.06, G:0.20, T:0.54
Consensus pattern (18 bp):
ATTTTACGGTTAATTTGG
Found at i:63854666 original size:23 final size:24
Alignment explanation
Indices: 63854622--63854677 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
63854612 TAAGATGATT
63854622 ATATATAGAATTATAATAAATTAAA
1 ATATATA-AATTATAATAAATTAAA
* *
63854647 ATATATAAATT-TATTGAATTAAA
1 ATATATAAATTATAATAAATTAAA
*
63854670 ATAAATAA
1 ATATATAA
63854678 TTAAATTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 17 0.61
24 4 0.14
25 7 0.25
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATATATAAATTATAATAAATTAAA
Found at i:63855672 original size:21 final size:20
Alignment explanation
Indices: 63855647--63855695 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
63855637 TTGAGTTAAT
* *
63855647 TTTTTTAGATAATTACGTTTA
1 TTTTTTAGAAAATTAAG-TTA
*
63855668 TTTTTAAAGAAAATTAAGTTA
1 TTTTT-TAGAAAATTAAGTTA
63855689 TTTTTTA
1 TTTTTTA
63855696 AATTTCATGT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (20 bp):
TTTTTTAGAAAATTAAGTTA
Found at i:63858154 original size:22 final size:22
Alignment explanation
Indices: 63858128--63858181 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
63858118 TTTTTCTTTA
**
63858128 TTTATGAATTTCATCCTTTAGT
1 TTTATGAATTTCAAACTTTAGT
* *
63858150 TTTATGAATATCAAATTTTAGT
1 TTTATGAATTTCAAACTTTAGT
63858172 TTT-TGAATTT
1 TTTATGAATTT
63858182 TGTGATAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (22 bp):
TTTATGAATTTCAAACTTTAGT
Found at i:63859683 original size:21 final size:21
Alignment explanation
Indices: 63859659--63859706 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
63859649 CCATGAAGCT
63859659 CTTGGTTCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
**
63859680 CTTGAATCATCAAATGAAAAC
1 CTTGGTTCATCAAATGAAAAC
63859701 CTTGGT
1 CTTGGT
63859707 GGAGCTATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.29
Consensus pattern (21 bp):
CTTGGTTCATCAAATGAAAAC
Found at i:63868249 original size:6 final size:6
Alignment explanation
Indices: 63868238--63868281 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
63868228 GAATTATTGA
* *
63868238 ATTATC ATTATC ATTAGC ATTAGC ATTAGC ATTAGC ATT-GC ATT
1 ATTAGC ATTAGC ATTAGC ATTAGC ATTAGC ATTAGC ATTAGC ATT
63868282 GTTCTTGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.41
Consensus pattern (6 bp):
ATTAGC
Found at i:63868806 original size:28 final size:27
Alignment explanation
Indices: 63868772--63868827 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
63868762 GAGTCAACTT
63868772 TTAATTTTA-ATTAAACAAATTCAAATTA
1 TTAATTTTATA-TAAACAAATT-AAATTA
*
63868800 TTAATTTTATATAATCAAATTAAATTA
1 TTAATTTTATATAAACAAATTAAATTA
63868827 T
1 T
63868828 ATTTTCATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 7 0.27
28 18 0.69
29 1 0.04
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (27 bp):
TTAATTTTATATAAACAAATTAAATTA
Found at i:63871058 original size:51 final size:50
Alignment explanation
Indices: 63870997--63871154 Score: 253
Period size: 51 Copynumber: 3.1 Consensus size: 50
63870987 CAGTGGCAAG
*
63870997 AGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGACA
1 AGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAGTGACAAGTGACA
* *
63871048 AGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACAAGTGGCA
1 AGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACAAGTGACA
* *
63871099 AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGGGACAAGTGATA
1 AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACA
63871149 AGTGAT
1 AGTGAT
63871155 CATACGTAAG
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
50 37 0.37
51 60 0.61
52 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (50 bp):
AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACA
Found at i:63873153 original size:9 final size:9
Alignment explanation
Indices: 63873141--63873185 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
63873131 TTGATTTTTT
63873141 TTTAAAAAA
1 TTTAAAAAA
* *
63873150 TTTAACAAT
1 TTTAAAAAA
63873159 TTTAAAAAA
1 TTTAAAAAA
*
63873168 TTAAAAAAA
1 TTTAAAAAA
63873177 TCTTAAAAA
1 T-TTAAAAA
63873186 TAAATATAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
9 23 0.79
10 6 0.21
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:63873723 original size:16 final size:16
Alignment explanation
Indices: 63873692--63873723 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63873682 ATCGATATAC
*
63873692 GAAAAAGGAGAAAAAA
1 GAAAAAGGAAAAAAAA
63873708 GAAAAAGGAAAAAAAA
1 GAAAAAGGAAAAAAAA
63873724 ATTTGTGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
GAAAAAGGAAAAAAAA
Found at i:63874231 original size:109 final size:106
Alignment explanation
Indices: 63873919--63874243 Score: 337
Period size: 108 Copynumber: 3.0 Consensus size: 106
63873909 TATACAAAAA
* *
63873919 AATTTAAAAAAAATTTTCTTTTTTTTCGT-TCAGAATCAGATATCAGTATACGAAAAAATTTAAA
1 AATTTAAAAAAAATTTTTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAA-GTAAA
**** *
63873983 AATTTTTTTTTGGTGCTGGCCTGTCAATGGCCAGCACCCAACAAT
65 AAAAAATTTTT--TGCTGGCCTGTCAATGGCCAGCA-CCAACAAC
** * * * *
63874028 AATAAAAAAAAAGAAATTTTACTTTTTTTTTCGTGTTAAAAACAGGTATCAGTATACGAAAAAAG
1 AAT--TTAAAAA-AAATTTT--TTTTTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAG
** * * **
63874093 TAAAAAAAAATTTGGGTGCTAGCCTGTCAATGGCCGGCACCAAGTAC
61 TAAAAAAAAATTT-TTTGCTGGCCTGTCAATGGCCAGCACCAACAAC
* *
63874140 AATTTAAAAAAAATTTCTTTTTTTTTTCGTGTCAGAATCAGATATTAATATACGAAAAAAGTAAA
1 AATTTAAAAAAAATTT-TTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAGT--A
63874205 AAAAAAAATTTTTTGCTGGCCTGTCAATGGCCAGCACCA
63 AAAAAAAATTTTTTGCTGGCCTGTCAATGGCCAGCACCA
63874244 CCTTCTTGTA
Statistics
Matches: 175, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
108 38 0.22
109 33 0.19
110 18 0.10
111 5 0.03
112 15 0.09
113 21 0.12
114 20 0.11
115 25 0.14
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (106 bp):
AATTTAAAAAAAATTTTTTTTTTTTTCGTGTCAGAATCAGATATCAGTATACGAAAAAAGTAAAA
AAAAATTTTTTGCTGGCCTGTCAATGGCCAGCACCAACAAC
Found at i:63874486 original size:14 final size:14
Alignment explanation
Indices: 63874467--63874497 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
63874457 ACACCCAAAA
63874467 TTTTTTTTTC-CTT
1 TTTTTTTTTCTCTT
63874480 TTTTTTTTTCTCTT
1 TTTTTTTTTCTCTT
63874494 TTTT
1 TTTT
63874498 CATATATCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTTTTTCTCTT
Found at i:63877187 original size:13 final size:13
Alignment explanation
Indices: 63877169--63877195 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63877159 CAGAGCTTTA
63877169 ATCACCAGTCTTG
1 ATCACCAGTCTTG
63877182 ATCACCAGTCTTG
1 ATCACCAGTCTTG
63877195 A
1 A
63877196 CATTCAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (13 bp):
ATCACCAGTCTTG
Found at i:63886568 original size:40 final size:40
Alignment explanation
Indices: 63886511--63886589 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
63886501 GTTTTAAAAA
* * * *
63886511 TTTTGAATTTGACCATTATGGATTCGGATTATTTTGGGTT
1 TTTTGAATTTGACCATTACGAATTCGAATAATTTTGGGTT
* *
63886551 TTTTGAGTTTGATCATTACGAATTCGAATAATTTTGGGT
1 TTTTGAATTTGACCATTACGAATTCGAATAATTTTGGGT
63886590 CATTTGATCG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.23, C:0.08, G:0.22, T:0.48
Consensus pattern (40 bp):
TTTTGAATTTGACCATTACGAATTCGAATAATTTTGGGTT
Found at i:63889394 original size:13 final size:13
Alignment explanation
Indices: 63889376--63889403 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
63889366 TTGGTTAGGA
63889376 ATTAACTAAAAAC
1 ATTAACTAAAAAC
63889389 ATTAACTAAAAAC
1 ATTAACTAAAAAC
63889402 AT
1 AT
63889404 GTTACTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (13 bp):
ATTAACTAAAAAC
Found at i:63889982 original size:20 final size:20
Alignment explanation
Indices: 63889957--63890006 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63889947 TGGCTTAAAA
63889957 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63889977 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63889994 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63890007 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63894611 original size:20 final size:20
Alignment explanation
Indices: 63894586--63894635 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63894576 TGGCTTAAAA
63894586 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63894606 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63894623 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63894636 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63908312 original size:111 final size:110
Alignment explanation
Indices: 63908116--63908340 Score: 405
Period size: 111 Copynumber: 2.0 Consensus size: 110
63908106 ACTACACAAA
*
63908116 AAAATCAAATTACTCAGTACATAAATGTTGAGGGTTATTTTTTAGAATCAAGACTAATTTGACAT
1 AAAATCAAATTACTCAGTACATAAATGTTGAGGGTTATTTTTTAAAATCAAGACTAATTTGACAT
63908181 AATTTATAAATGCTGAGGGTTAAAGGTACTATTATGCCAAGTTTT
66 AATTTATAAATGCTGAGGGTTAAAGGTACTATTATGCCAAGTTTT
63908226 AAAATCAAATTACTCAGTACATAAATGTTGAGGGTTATTTTTTTAAAATCAAGACTAATTTGACA
1 AAAATCAAATTACTCAGTACATAAATGTTGAGGGTTA-TTTTTTAAAATCAAGACTAATTTGACA
* * *
63908291 TAATTTATAAATGTTGGGGGTTAAAGTTACTATTATGCCAAGTTTT
65 TAATTTATAAATGCTGAGGGTTAAAGGTACTATTATGCCAAGTTTT
63908337 AAAA
1 AAAA
63908341 GTTGTCGCCA
Statistics
Matches: 110, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
110 37 0.34
111 73 0.66
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (110 bp):
AAAATCAAATTACTCAGTACATAAATGTTGAGGGTTATTTTTTAAAATCAAGACTAATTTGACAT
AATTTATAAATGCTGAGGGTTAAAGGTACTATTATGCCAAGTTTT
Found at i:63908937 original size:13 final size:13
Alignment explanation
Indices: 63908919--63908943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63908909 ATATTGATTT
63908919 TTCAGTGTTTTAA
1 TTCAGTGTTTTAA
63908932 TTCAGTGTTTTA
1 TTCAGTGTTTTA
63908944 GTTGGATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (13 bp):
TTCAGTGTTTTAA
Found at i:63923465 original size:21 final size:19
Alignment explanation
Indices: 63923441--63923489 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
63923431 AAAAAATTTG
*
63923441 AATTTTTTATAACTTCTTTAT
1 AATTTTTTATAA-TT-TATAT
*
63923462 AATTTTTAATAATTTATAT
1 AATTTTTTATAATTTATAT
63923481 AATATTTTT
1 AAT-TTTTT
63923490 TTAAATTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 7 0.29
20 6 0.25
21 11 0.46
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (19 bp):
AATTTTTTATAATTTATAT
Found at i:63933352 original size:62 final size:64
Alignment explanation
Indices: 63933223--63933364 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 64
63933213 GCATACATTC
63933223 TTTGCCTTCAATTCAATAAATTCAACCAAAGAAAGAGGGAACTTTAGGTCATATTTACCCAACA
1 TTTGCCTTCAATTCAATAAATTCAACCAAAGAAAGAGGGAACTTTAGGTCATATTTACCCAACA
* * * *
63933287 TTTGCCTTCAATTCCATAAATTCAAGCAGA-AAAGA-GGAACCTTTAGGTCA-ATTTACCCAATA
1 TTTGCCTTCAATTCAATAAATTCAACCAAAGAAAGAGGGAA-CTTTAGGTCATATTTACCCAACA
*
63933349 TTTGCTTTCAATTCAA
1 TTTGCCTTCAATTCAA
63933365 AACCCGACAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
62 29 0.41
63 15 0.21
64 27 0.38
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (64 bp):
TTTGCCTTCAATTCAATAAATTCAACCAAAGAAAGAGGGAACTTTAGGTCATATTTACCCAACA
Found at i:63952580 original size:193 final size:193
Alignment explanation
Indices: 63952245--63952601 Score: 513
Period size: 193 Copynumber: 1.8 Consensus size: 193
63952235 CCTAGCTCGA
* * *
63952245 TAAGATATTGTTCACTTTGGGCGTACATGCCCTCACAGTTTTGTTATTGGGAGCATTCATACACC
1 TAAGATATTGTTCACTTTGAGCGCACATGCCCTCACAGTTTTGTTATTGAGAGCATTCATACACC
* * * *
63952310 CTCAAAAGGTCTCTTACCACTTAAGTGTTGTTACCCTTTTATATAGCACATGCTTTTCCCGTGCT
66 CTCAAAAGGCCTCTTACCACTTAAGTGTTGCTACCCCTTTATATAGCACATGCTTCTCCCGTGCT
* *
63952375 TTGCTAATGTGAGATTTGCCTAAGGTTTTACATTATAAATGTCATAACCAACACCCAGCATGG
131 TTGCCAATGTGAGATTTGCCTAAGGTGTTACATTATAAATGTCATAACCAACACCCAGCATGG
* * ** *
63952438 TAAGATATTTTTCGCTTTGAGCGCACATGGCCCTCATGGTTTTGTTATTGAGAG-TTTCTATACA
1 TAAGATATTGTTCACTTTGAGCGCACAT-GCCCTCACAGTTTTGTTATTGAGAGCATTC-ATACA
*
63952502 CCC-CAAAAGGCCTCTTACCACTTAAGTGTTGCTACCCCTTTATATAGCACATG-TCTCTCTCGT
64 CCCTCAAAAGGCCTCTTACCACTTAAGTGTTGCTACCCCTTTATATAGCACATGCT-TCTCCCGT
* *
63952565 GCTTTGCCGATGTGAGATTTGCCTAGGGTGTTACATT
128 GCTTTGCCAATGTGAGATTTGCCTAAGGTGTTACATT
63952602 CACCTCCCTT
Statistics
Matches: 144, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
192 1 0.01
193 113 0.78
194 30 0.21
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (193 bp):
TAAGATATTGTTCACTTTGAGCGCACATGCCCTCACAGTTTTGTTATTGAGAGCATTCATACACC
CTCAAAAGGCCTCTTACCACTTAAGTGTTGCTACCCCTTTATATAGCACATGCTTCTCCCGTGCT
TTGCCAATGTGAGATTTGCCTAAGGTGTTACATTATAAATGTCATAACCAACACCCAGCATGG
Found at i:63952911 original size:275 final size:271
Alignment explanation
Indices: 63952409--63953305 Score: 1098
Period size: 275 Copynumber: 3.3 Consensus size: 271
63952399 GTTTTACATT
* *
63952409 ATAAATGTCATAACCAACACCCAGCATGGTAAGATATTTTTCGCTTT-GAGCGCACATGGCCCTC
1 ATAAATGTCATAACCAACACCCAGC-CGGTAAGATATTGTTCGCTTTAG-GCGCACATGGCCCTC
* * * ** * * *
63952473 ATGGTTTTGTTATTGAGAGTTTCTATACACCCCAAAAGGCCTCTTACCACTTAAGTGTTGCTACC
64 ATGGCTTTGTTCTTGGGAGTGCCCATACACTCCAAAAGGCCTTTTACCACTTAAGTGTTGCTA-C
* * *
63952538 CCTTTATATAGCACATGTCTCT-CTCGTGCTTTGCCGATGTGAGATTTGCCTAGGGTGTTACATT
128 CCTTTATATAGCCCAAGTCTCTCCT-GTGCTTTGCTGATGTGAGATTTGCCTAGGGTGTTACATT
* ** * * *
63952602 CACCTCCCTTAGGGACTCAACATCCTCGCTGAGGTTTGCCCCACCATCACTCAAAAGGCATAATG
192 CACC-CCCTTAGGGACTTAATGTCCTCGCTGAGGTTTGCCCCACCATCACTCAAGAGGCACAACG
63952667 AGTGGCTCTGATACCA
256 AGTGGCTCTGATACCA
** *
63952683 ATAAATGTCATAACCAACACCCAGTCCGGTAAGATATTGTTCATTTTAGGCGCACATGGCCCTTA
1 ATAAATGTCATAACCAACACCCAG-CCGGTAAGATATTGTTCGCTTTAGGCGCACATGGCCCTCA
* * *
63952748 CGGCTTTGTTCTTGGGAGCGCCCATACATCTCCAAAAGGCTTTTTACCACTTAAGTGTTGCTACG
65 TGGCTTTGTTCTTGGGAGTGCCCATACA-CTCCAAAAGGCCTTTTACCACTTAAGTGTTGCTAC-
*
63952813 CCTTTATATAGCCCAGGTCTCTCCTGTGCTTTGCTGATGTGAGATTTGCCTAGGGTGTTACATTC
128 CCTTTATATAGCCCAAGTCTCTCCTGTGCTTTGCTGATGTGAGATTTGCCTAGGGTGTTACATTC
* ** * *
63952878 AATCCCCTTAAAGACTTAATGTCCTCCCTGAGGTTTGCCCCACCATCACTCAAGAGGCACAGCGA
193 -ACCCCCTTAGGGACTTAATGTCCTCGCTGAGGTTTGCCCCACCATCACTCAAGAGGCACAACGA
*
63952943 GTGGCTCTGATATCA
257 GTGGCTCTGATACCA
* * *
63952958 ATAAATGTAATAACCAACACCCAGCCTGGTAAGATATTGTCCGCTTTAGGCGCACATGACCCTCA
1 ATAAATGTCATAACCAACACCCAGCC-GGTAAGATATTGTTCGCTTTAGGCGCACATGGCCCTCA
* * * *
63953023 TGGCTTTATTCTTGGGAGTGCCCATACACCTCTAAAAGGCCTTTTATCACTTAAGTGTTGTTATC
65 TGGCTTTGTTCTTGGGAGTGCCCATACA-CTCCAAAAGGCCTTTTACCACTTAAGTGTTGCTA-C
* * *
63953088 CCTTTATATAGCCCAAGTCTCTCCCGTGCTTTGCTGATGTGGGATTTGCCTAGGGTATTACATTC
128 CCTTTATATAGCCCAAGTCTCTCCTGTGCTTTGCTGATGTGAGATTTGCCTAGGGTGTTACATTC
* * * * * *
63953153 ACCCCCTTAGGGACTTAGTGTCCTCGTTAAGGTTTGCCCTACCATCGCTCAAGAGGCACGACGAG
193 ACCCCCTTAGGGACTTAATGTCCTCGCTGAGGTTTGCCCCACCATCACTCAAGAGGCACAACGAG
* **
63953218 TGACTCTGATA-TT
258 TGGCTCTGATACCA
* * * * * * * * *
63953231 ATAAATGTTATAGCCAATATCCAACCTGGTAAGATATTGTCCGCTTTGGGCGCATATGGCCATCA
1 ATAAATGTCATAACCAACACCCAGCC-GGTAAGATATTGTTCGCTTTAGGCGCACATGGCCCTCA
* *
63953296 CGACTTTGTT
65 TGGCTTTGTT
63953306 ATTAGAAATG
Statistics
Matches: 540, Mismatches: 75, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
273 63 0.12
274 143 0.26
275 329 0.61
276 5 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (271 bp):
ATAAATGTCATAACCAACACCCAGCCGGTAAGATATTGTTCGCTTTAGGCGCACATGGCCCTCAT
GGCTTTGTTCTTGGGAGTGCCCATACACTCCAAAAGGCCTTTTACCACTTAAGTGTTGCTACCCT
TTATATAGCCCAAGTCTCTCCTGTGCTTTGCTGATGTGAGATTTGCCTAGGGTGTTACATTCACC
CCCTTAGGGACTTAATGTCCTCGCTGAGGTTTGCCCCACCATCACTCAAGAGGCACAACGAGTGG
CTCTGATACCA
Found at i:63959654 original size:18 final size:17
Alignment explanation
Indices: 63959620--63959657 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
63959610 TAAACATAAA
63959620 TAAAGGGTTAATTTTTT
1 TAAAGGGTTAATTTTTT
63959637 TAAAGGGTTAATTTTTT
1 TAAAGGGTTAATTTTTT
63959654 TAAA
1 TAAA
63959658 TAATTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (17 bp):
TAAAGGGTTAATTTTTT
Found at i:63965060 original size:7 final size:7
Alignment explanation
Indices: 63965048--63965072 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63965038 CGTTAACGCT
63965048 ATTATCA
1 ATTATCA
63965055 ATTATCA
1 ATTATCA
63965062 ATTATCA
1 ATTATCA
63965069 ATTA
1 ATTA
63965073 ACACTGGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTATCA
Found at i:63988067 original size:21 final size:21
Alignment explanation
Indices: 63988041--63988081 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63988031 AGACGAGCAA
* *
63988041 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
63988062 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
63988082 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:64003225 original size:31 final size:32
Alignment explanation
Indices: 64003190--64003251 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
64003180 TTCTTTTAGT
* * *
64003190 AAATTTGGTCCTCAA-CTTTTTAAAAAGAGTC
1 AAATTTGATCATCAACCTTTTGAAAAAGAGTC
64003221 AAATTTGATCATCAACCTTTTGAAAAAGAGT
1 AAATTTGATCATCAACCTTTTGAAAAAGAGT
64003252 TTATTTGATG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.34
Consensus pattern (32 bp):
AAATTTGATCATCAACCTTTTGAAAAAGAGTC
Found at i:64012154 original size:202 final size:198
Alignment explanation
Indices: 64011776--64012168 Score: 570
Period size: 202 Copynumber: 2.0 Consensus size: 198
64011766 CAAGGTAAGC
* * * *
64011776 TTTAAAGAAAATTTAGGTCCCTTGGGCAATTGGAAATAAAAGAATATGTTTATATCCTCAAGTGC
1 TTTAAAGAAAATTTAGGTCCCTTGGGCAATTAGAAAAAAAAGAAAATGTTTATATCCTCAAGAGC
* * ** *
64011841 CTAGCATGACCAGACATGATATTGGCAACAGGGAAAAGAGGAGATTGAAAAGAAATTAATCACCT
66 CTAGCAAGACCAGACATAATATTGGCAACAGGGAAAAGAGGAGATCCAAAAGAAATTAACCACCT
* **
64011906 CGGCAAAGTTGCCCAGCCTTCAAATTCTATTCTACACCTTACAGAGTGACAACCACTTTATAGTA
131 CGGCAAAGTTGCCCAGCCTTCAAATTCCAGCCTACACCTTACAGAGTGACAACCACTTTATAGTA
64011971 ACT
196 ACT
*
64011974 TTTAAAGAAAATTTAGGTCCCTTGGGCAATTAGAATAAAACAAGAAAATGTTTATATCCTTAAGG
1 TTTAAAGAAAATTTAGGTCCCTTGGGCAATTAGAA-AAAA-AAGAAAATGTTTATATCCTCAA-G
* * * *
64012039 AGCCTAGCAAGACCAGACATAATATTGGCAACAGGGAAAAGAGGTGAATCCATAAGATATTGACC
63 AGCCTAGCAAGACCAGACATAATATTGGCAACAGGGAAAAGAGGAG-ATCCAAAAGAAATTAACC
* * *
64012104 ACCTCGGCAAAGTTGCCCATCCTTCAAATTCCAGCCTACATCTTACAGAGTGATAACCACTTTAT
127 ACCTCGGCAAAGTTGCCCAGCCTTCAAATTCCAGCCTACACCTTACAGAGTGACAACCACTTTAT
64012169 GATAATTTGA
Statistics
Matches: 171, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
198 34 0.20
199 3 0.02
200 20 0.12
201 43 0.25
202 71 0.42
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (198 bp):
TTTAAAGAAAATTTAGGTCCCTTGGGCAATTAGAAAAAAAAGAAAATGTTTATATCCTCAAGAGC
CTAGCAAGACCAGACATAATATTGGCAACAGGGAAAAGAGGAGATCCAAAAGAAATTAACCACCT
CGGCAAAGTTGCCCAGCCTTCAAATTCCAGCCTACACCTTACAGAGTGACAACCACTTTATAGTA
ACT
Found at i:64022929 original size:4 final size:4
Alignment explanation
Indices: 64022920--64022946 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
64022910 TATATCAGTA
64022920 TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TAT
64022947 ATCAGCATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:64023549 original size:102 final size:102
Alignment explanation
Indices: 64023396--64023898 Score: 621
Period size: 102 Copynumber: 4.8 Consensus size: 102
64023386 AATTCAATGG
* ** * ** * * **
64023396 CATTTCACCTGCAAG-ATCTCTTGCATCAGAGGGTGTTGGCATATTTGGCTCTTGCGTTCCAGGC
1 CATTTCACCTGC-AGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGC
*
64023460 ATGCTATGGTTCGTGTTTTGATCGATGGAACTCGATGC
65 ATGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
* *
64023498 CATTTCACCTGCAGCATCTCTTACATCCTCGGGTGTTGGAATGTTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
*
64023563 TGCTACGGTTCGTGTTTTGATCGATGGAATTCGATGC
66 TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
*
64023600 CATTTCACCTGCAGCATCTCTTACATCATCTGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
*
64023665 TGCTACGGCTCGTGTTTTGATCGATGGAACTCGATGC
66 TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
* *
64023702 CATTTCACCTGCAGCATCTCTTACATCATCAGGTGCTGGAATATTCAGCTCTTGCCTTTCTTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* * * *
64023767 TGCTACGGTTCATGTTTTTATGGACTTGATCGTCGGAGCTCGATGG
66 TGCTACGGTTC--GTGTTT-T-GA-TCGA---T-GGAACTCGATGC
* ** * ** * *
64023813 CATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATATTCAGCTCTTGCCTTCCCTGCA
1 CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
* *
64023878 TGCTACTGTTCATGTTTTGAT
66 TGCTACGGTTCGTGTTTTGAT
64023899 AAACTTGATT
Statistics
Matches: 352, Mismatches: 39, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
101 2 0.01
102 255 0.72
104 5 0.01
105 1 0.00
106 3 0.01
107 5 0.01
108 1 0.00
109 4 0.01
110 1 0.00
111 75 0.21
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (102 bp):
CATTTCACCTGCAGCATCTCTTACATCATCGGGTGTTGGAATATTCAGCTCTTGCCTTTCTTGCA
TGCTACGGTTCGTGTTTTGATCGATGGAACTCGATGC
Found at i:64023857 original size:111 final size:108
Alignment explanation
Indices: 64023681--64024018 Score: 363
Period size: 111 Copynumber: 3.0 Consensus size: 108
64023671 GGCTCGTGTT
* * * * *
64023681 TTGATCGATGGAACTCGATGCCATTTCACCTGCAGCATCTCTTACATCATCAGGTGCTGGAATAT
1 TTGATCG-TGGAACTCGATGGCATTTCACCTGCAGCATCTCTTGCATCA-AAGGTG-TTGTATAT
* * * **
64023746 TCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTTATGGAC
63 TCAGCTCTTGCCTTCCCTGCATGCTACGGTTCATGTTTTGATAAAC
*
64023792 TTGATCGTCGGAGCTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGTCATAT
1 TTGATCGT-GGAACTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGG-TGTTGT-ATAT
*
64023857 TCAGCTCTTGCCTTCCCTGCATGCTACTGTTCATGTTTTGATAAAC
63 TCAGCTCTTGCCTTCCCTGCATGCTACGGTTCATGTTTTGATAAAC
* * * * * *
64023903 TTGATTAGTGGAACTCAATGGCCA-TTCACCTACAGCATGTCTTGCATAAAAGGGTCTCTGTATA
1 TTGA-TCGTGGAACTCGATGG-CATTTCACCTGCAGCATCTCTTGCATCAAA-GGTGT-TGTATA
* * * * * *
64023967 TTCGGTTCTTGCCATCCCTGCATGCTTCGGCTCATGTTTTCATAAAC
62 TTCAGCTCTTGCCTTCCCTGCATGCTACGGTTCATGTTTTGATAAAC
64024014 TTGAT
1 TTGAT
64024019 TAATGGAACT
Statistics
Matches: 194, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
110 7 0.04
111 177 0.91
112 10 0.05
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (108 bp):
TTGATCGTGGAACTCGATGGCATTTCACCTGCAGCATCTCTTGCATCAAAGGTGTTGTATATTCA
GCTCTTGCCTTCCCTGCATGCTACGGTTCATGTTTTGATAAAC
Found at i:64024045 original size:111 final size:110
Alignment explanation
Indices: 64023742--64024090 Score: 326
Period size: 111 Copynumber: 3.1 Consensus size: 110
64023732 AGGTGCTGGA
* * * * * * ** ** *
64023742 ATATTCAGCTCTTGCCTTTCTTGCATGCTACGGTTCATGTTTTTATGGACTTGA-TCGTCGGAGC
1 ATATTCGGCTCTTGCCATCCCTGCATGCTACGGCTCATGTTTTCATAAACTTGATTAAT-GGAAC
* * * * * *
64023806 TCGATGG-CATTTCACCTGCAGCATCTCTTGCATCAAAGGATGTTGT
65 TCAATGGCCA-TTCACCTACAGCATATCTTGCATAAAAGGGTATTGT
* * * * * *
64023852 CATATTCAGCTCTTGCCTTCCCTGCATGCTACTGTTCATGTTTTGATAAACTTGATTAGTGGAAC
1 -ATATTCGGCTCTTGCCATCCCTGCATGCTACGGCTCATGTTTTCATAAACTTGATTAATGGAAC
* *
64023917 TCAATGGCCATTCACCTACAGCATGTCTTGCATAAAAGGGTCTCTGT
65 TCAATGGCCATTCACCTACAGCATATCTTGCATAAAAGGGTAT-TGT
* *
64023964 ATATTCGGTTCTTGCCATCCCTGCATGCTTCGGCTCATGTTTTCATAAACTTGATTAATGGAACT
1 ATATTCGGCTCTTGCCATCCCTGCATGCTACGGCTCATGTTTTCATAAACTTGATTAATGGAACT
** * * * *
64024029 CAATGGCTGTAT-ACCTACAGCACAACTTCCATAAAAGGGTATTCGA
66 CAATGGCCAT-TCACCTACAGCATATCTTGCATAAAAGGGTATT-GT
64024075 ATATTCGGCTCTTGCC
1 ATATTCGGCTCTTGCC
64024091 TACATACTTG
Statistics
Matches: 202, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
110 1 0.00
111 192 0.95
112 9 0.04
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (110 bp):
ATATTCGGCTCTTGCCATCCCTGCATGCTACGGCTCATGTTTTCATAAACTTGATTAATGGAACT
CAATGGCCATTCACCTACAGCATATCTTGCATAAAAGGGTATTGT
Found at i:64026587 original size:23 final size:23
Alignment explanation
Indices: 64026553--64026607 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
64026543 AAATTTTAGT
*
64026553 AAAA-TTGTTTTGTTTTGAATGA
1 AAAAGTTGATTTGTTTTGAATGA
64026575 AAAAGTTGATTTGTTTTGAATGA
1 AAAAGTTGATTTGTTTTGAATGA
64026598 AAAAGTTGAT
1 AAAAGTTGAT
64026608 AAAAATTCGA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.13
23 27 0.87
ACGTcount: A:0.36, C:0.00, G:0.20, T:0.44
Consensus pattern (23 bp):
AAAAGTTGATTTGTTTTGAATGA
Found at i:64027337 original size:22 final size:22
Alignment explanation
Indices: 64027311--64027352 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64027301 AATAAACTAT
*
64027311 TTTGCTACCATTTCGCTATTGC
1 TTTGCTACAATTTCGCTATTGC
*
64027333 TTTGCTACAATTTCGTTATT
1 TTTGCTACAATTTCGCTATT
64027353 ATATTGTTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.21, G:0.12, T:0.50
Consensus pattern (22 bp):
TTTGCTACAATTTCGCTATTGC
Found at i:64028616 original size:17 final size:18
Alignment explanation
Indices: 64028594--64028627 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64028584 AATAATGTAA
*
64028594 TTAAAA-TATTTTAAAAT
1 TTAAAATTAATTTAAAAT
64028611 TTAAAATTAATTTAAAA
1 TTAAAATTAATTTAAAA
64028628 GAGGATGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAATTAATTTAAAAT
Found at i:64029924 original size:123 final size:123
Alignment explanation
Indices: 64029703--64029950 Score: 399
Period size: 123 Copynumber: 2.0 Consensus size: 123
64029693 TGTTTTATTT
* * *
64029703 AGAAAAACTTTGTGAATTAATTTTATGGAGGGATTTTGTGATGTTTACAAATAATCGTAGACATT
1 AGAAAAACTTTGTCAATTAATCTTATGGAGGGATTTTGTGATCTTTACAAATAATCGTAGACATT
*
64029768 CAGGGTTTTTATAAAGTTGGGTGATAAAATTCTATCATATATAAGTATTGACCTTAAA
66 CAGGGTTTTTATAAAGTTGGGTGATAAAATTCTATCATAAATAAGTATTGACCTTAAA
* * * *
64029826 AGAAAAAGC-TTGTCAATTGATCTTATGGAGGGATTTTGTTATCTTTTCAAATAATCGTAGATAT
1 AGAAAAA-CTTTGTCAATTAATCTTATGGAGGGATTTTGTGATCTTTACAAATAATCGTAGACAT
*
64029890 TCAGGGTTTTTATAAAGTTGGGTGATAAAGTTCTATCATAAATAAGTATTGACCTTAAA
65 TCAGGGTTTTTATAAAGTTGGGTGATAAAATTCTATCATAAATAAGTATTGACCTTAAA
64029949 AG
1 AG
64029951 GGTTTTGTCT
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
123 114 0.99
124 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (123 bp):
AGAAAAACTTTGTCAATTAATCTTATGGAGGGATTTTGTGATCTTTACAAATAATCGTAGACATT
CAGGGTTTTTATAAAGTTGGGTGATAAAATTCTATCATAAATAAGTATTGACCTTAAA
Found at i:64040707 original size:26 final size:27
Alignment explanation
Indices: 64040656--64040710 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
64040646 TTTAAAATAC
* * *
64040656 TTTTAAAATATTTTTTTATTTTTTTAT
1 TTTTAAAATAATTTTTTATATGTTTAT
64040683 TTTTAAAATAATTTTTTA-ATGTTTAT
1 TTTTAAAATAATTTTTTATATGTTTAT
64040709 TT
1 TT
64040711 AAAAATAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTTAAAATAATTTTTTATATGTTTAT
Found at i:64041132 original size:143 final size:143
Alignment explanation
Indices: 64040872--64041153 Score: 474
Period size: 143 Copynumber: 2.0 Consensus size: 143
64040862 AAAACACAAA
*
64040872 ACCAAGTAATTCCTTAATGTTGGTATATTAAATGTAAACATAAATGTCAGTGATGGACTAAAGCA
1 ACCAAGTAATTCCTTAATGTTGGTATATTAAATGGAAACATAAATGTCAGTGATGGACTAAAGCA
* * * *
64040937 ATTAGATTCAAGTTCAGCCTCAATTAGTTTCAAAGCCGCAATGGGCAACTCTCAATTTACTGCAT
66 ATTAGATGCAAGTTCAGCCACAATTAGTTTCAAAGCCGCAATGGGCAACTCTCAATATACGGCAT
64041002 AAGCGTTGACCAG
131 AAGCGTTGACCAG
* *
64041015 ACCAAGTTATTCCTTAATGTTGGTATATTAAATGGAAACATAAATGTTAGTGATGGACTAAAGCA
1 ACCAAGTAATTCCTTAATGTTGGTATATTAAATGGAAACATAAATGTCAGTGATGGACTAAAGCA
* *
64041080 ATTAGATGCAAGTTCAGCCACAATTAGTTTCAACGCCGCAATGGGCAGCTCTCAATATACGGCAT
66 ATTAGATGCAAGTTCAGCCACAATTAGTTTCAAAGCCGCAATGGGCAACTCTCAATATACGGCAT
*
64041145 ATGCGTTGA
131 AAGCGTTGA
64041154 TCATTAGGGT
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
143 129 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (143 bp):
ACCAAGTAATTCCTTAATGTTGGTATATTAAATGGAAACATAAATGTCAGTGATGGACTAAAGCA
ATTAGATGCAAGTTCAGCCACAATTAGTTTCAAAGCCGCAATGGGCAACTCTCAATATACGGCAT
AAGCGTTGACCAG
Found at i:64041523 original size:9 final size:9
Alignment explanation
Indices: 64041501--64041554 Score: 55
Period size: 8 Copynumber: 6.4 Consensus size: 9
64041491 TTTTTATTAA
64041501 AATTTTTAT
1 AATTTTTAT
64041510 GAATTTTTAT
1 -AATTTTTAT
*
64041520 AA-TTTT-G
1 AATTTTTAT
64041527 AATTTTT-T
1 AATTTTTAT
64041535 -ATTTTTAT
1 AATTTTTAT
64041543 AATTTTTA-
1 AATTTTTAT
64041551 AATT
1 AATT
64041555 ATTTGATGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 8 0.21
8 13 0.33
9 9 0.23
10 9 0.23
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:64053844 original size:13 final size:13
Alignment explanation
Indices: 64053826--64053851 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64053816 CATTGTCAAG
64053826 GTGATTAACAATC
1 GTGATTAACAATC
64053839 GTGATTAACAATC
1 GTGATTAACAATC
64053852 TTCGAGGCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
GTGATTAACAATC
Found at i:64060602 original size:31 final size:29
Alignment explanation
Indices: 64060541--64060609 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
64060531 ACAAAACAAT
**
64060541 AATAAAAATAATTAAAACGTAATATTTCA
1 AATAAAAATAATTAAAACGTAATAAATCA
* *
64060570 AATATAAATAATTAAAATGTAACTTAAATCA
1 AATAAAAATAATTAAAACGTAA--TAAATCA
64060601 AATAAAAAT
1 AATAAAAAT
64060610 GACCGTATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 20 0.61
31 13 0.39
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (29 bp):
AATAAAAATAATTAAAACGTAATAAATCA
Found at i:64069116 original size:14 final size:16
Alignment explanation
Indices: 64069092--64069123 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
64069082 TTTTTCTCTC
64069092 TTTCTATTTGTA-ATT
1 TTTCTATTTGTATATT
64069107 TTTC-ATTTGTATATT
1 TTTCTATTTGTATATT
64069122 TT
1 TT
64069124 ACAGTGAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (16 bp):
TTTCTATTTGTATATT
Found at i:64069814 original size:30 final size:32
Alignment explanation
Indices: 64069751--64069814 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
64069741 ATTTAAAATT
* *
64069751 AATAATAATAAATTATATTTTAATTCTTCAAA
1 AATAATAATAAATTATAATTTAAGTCTTCAAA
*
64069783 AATAATAAT-AATT-TAATTTAAGTCTTTAAA
1 AATAATAATAAATTATAATTTAAGTCTTCAAA
64069813 AA
1 AA
64069815 ATATAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 16 0.55
31 4 0.14
32 9 0.31
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (32 bp):
AATAATAATAAATTATAATTTAAGTCTTCAAA
Found at i:64069843 original size:16 final size:17
Alignment explanation
Indices: 64069818--64069850 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64069808 TTAAAAAATA
64069818 TAAAAATAT-AAATTAT
1 TAAAAATATAAAATTAT
*
64069834 TAAAATTATAAAATTAT
1 TAAAAATATAAAATTAT
64069851 ATTTAAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAAATATAAAATTAT
Found at i:64073911 original size:21 final size:20
Alignment explanation
Indices: 64073883--64073922 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
64073873 TTAATTATTT
64073883 AATTTTAAA-TATTATAAAAC
1 AATTTTAAATTATT-TAAAAC
64073903 AATTATTAAATTATTTAAAA
1 AATT-TTAAATTATTTAAAA
64073923 TTTTCAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AATTTTAAATTATTTAAAAC
Found at i:64075765 original size:21 final size:22
Alignment explanation
Indices: 64075723--64075765 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
64075713 AATTTACCGG
64075723 ATTAAATCAATTTTGAAAAAAA
1 ATTAAATCAATTTTGAAAAAAA
64075745 ATTAAATCAATTTTGAAAAAA
1 ATTAAATCAATTTTGAAAAAA
64075766 TAGGTGCAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.33
Consensus pattern (22 bp):
ATTAAATCAATTTTGAAAAAAA
Found at i:64094161 original size:285 final size:285
Alignment explanation
Indices: 64093510--64094382 Score: 1256
Period size: 285 Copynumber: 3.0 Consensus size: 285
64093500 CAAAACCAAT
* * * *
64093510 GAATACGAAAACATAGCATCAAACAACAA-TTATACTTATCATATACCATAATCAAAAAGATGCC
1 GAATAGGACAACATAGCATCAAACTACAAGCTATACTTATCATATACCATAATCAAAAAGATGCC
* * * * * * * *
64093574 ATCCAAATCATCATCAAACTAAGCTGAAAACCA-GAAACTATGAATGCTTAAATGATACCAAAAG
66 TTCCAAATCATCATCAAACTATGTTGAAAA-TAGGAAATTACGAATGCTTATACGATACCAAAAG
*
64093638 AACAGGAAAGTCGACTGTTCTTAAACCACTTGAAAGCATAATTAAATGACTTCACATTTTTAAGT
130 AACAGGAAAGTCG--TGTTCTTAAACCACTTGAAAGCATAA-TCAATGACTTCACA-TTTTAAGT
* *
64093703 TAAAAAAATGTAGTAATGTCACTTCCGAAGCACGTTATTATATCGGCTTTTCAATACCAATCACT
191 T-AAAAAATGTAGTAATATCACTTCCGAAGCACGTTATTATATCGGCTTTTCACTACCAATCACT
*
64093768 ACTTCCAAACAACTTCAAAGTTAAAAGTAAAA
255 ACTTCCAAACAACTTC-AAGTTAAAAGCAAAA
*
64093800 GAATAGGACAACATAGCATCAAACTACAAGCTATACTTATCATATACCATAATCGAAAAGATG--
1 GAATAGGACAACATAGCATCAAACTACAAGCTATACTTATCATATACCATAATCAAAAAGATGCC
*
64093863 TTGCCCAAATCATCATCAAACTATGTTGAAAATAGGAAATTACGAATGTTTATACGATACCAAAA
66 TT--CCAAATCATCATCAAACTATGTTGAAAATAGGAAATTACGAATGCTTATACGATACCAAAA
* * *
64093928 GAACAGGAAAGTTGTGTTCTTAAACCACTTGAAAGCATAATCAATAACTTTACATTTTCAAGTTA
129 GAACAGGAAAGTCGTGTTCTTAAACCACTTGAAAGCATAATCAATGACTTCACATTTT-AAGTTA
64093993 AAAAATGTAGTAATATCACTTCCGAAGCACGTTATTATATCGGCTTTTCACTACCAATCACTACT
193 AAAAATGTAGTAATATCACTTCCGAAGCACGTTATTATATCGGCTTTTCACTACCAATCACTACT
*
64094058 TCCAAAAAACTTC-AGTTAAAAGCAAAA
258 TCCAAACAACTTCAAGTTAAAAGCAAAA
* * *
64094085 GAATGGGACAACATAGCATCAAACTACAAGCTATACTTAACATATTCCATAATCAAAAAGATGCC
1 GAATAGGACAACATAGCATCAAACTACAAGCTATACTTATCATATACCATAATCAAAAAGATGCC
*
64094150 TTCCAAATCATCATCAAACTATGTTGAAAATAGGAAATTAC-AAGTGCTGATACGATACCAAAAG
66 TTCCAAATCATCATCAAACTATGTTGAAAATAGGAAATTACGAA-TGCTTATACGATACCAAAAG
* * *
64094214 AACAGGAAAGTCGTGTTCTTAAACCACTTGAAAGCATAATCAATGACTTCAGACTTGTAAGTTCA
130 AACAGGAAAGTCGTGTTCTTAAACCACTTGAAAGCATAATCAATGACTTCACA-TTTTAAGTTAA
* * *
64094279 AAAATGTACTAATATCACTTCCGAAGCACGTTATCATATCCGCTTTTCACTACCAATCACTAC-T
194 AAAATGTAGTAATATCACTTCCGAAGCACGTTATTATATCGGCTTTTCACTACCAATCACTACTT
* * *
64094343 CACAAACTACTTCAAAGATAAAAACAAAA
259 C-CAAACAACTTC-AAGTTAAAAGCAAAA
64094372 GAATAGGACAA
1 GAATAGGACAA
64094383 ACCTAACATA
Statistics
Matches: 529, Mismatches: 42, Indels: 27
0.88 0.07 0.05
Matches are distributed among these distances:
284 4 0.01
285 253 0.48
286 3 0.01
287 104 0.20
288 16 0.03
289 27 0.05
290 27 0.05
291 95 0.18
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.26
Consensus pattern (285 bp):
GAATAGGACAACATAGCATCAAACTACAAGCTATACTTATCATATACCATAATCAAAAAGATGCC
TTCCAAATCATCATCAAACTATGTTGAAAATAGGAAATTACGAATGCTTATACGATACCAAAAGA
ACAGGAAAGTCGTGTTCTTAAACCACTTGAAAGCATAATCAATGACTTCACATTTTAAGTTAAAA
AATGTAGTAATATCACTTCCGAAGCACGTTATTATATCGGCTTTTCACTACCAATCACTACTTCC
AAACAACTTCAAGTTAAAAGCAAAA
Found at i:64097706 original size:84 final size:83
Alignment explanation
Indices: 64097615--64097768 Score: 254
Period size: 84 Copynumber: 1.8 Consensus size: 83
64097605 TTTTTAGATT
* *
64097615 TTAGGGTTTAATGTTTATGGTTTTTAAGAAAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGA
1 TTAGGGTTTAATGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTA-GGTTACTTGA
64097680 GTAAATAAAAAAACTTAGA
65 GTAAATAAAAAAACTTAGA
* * *
64097699 TTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAGAATCAAATAAATTAGGGTTTAGGTTACTTGAG
1 TTAGGGTTTAATGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGTTACTTGAG
64097764 TAAAT
66 TAAAT
64097769 TAATTATAAA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
83 16 0.25
84 49 0.75
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (83 bp):
TTAGGGTTTAATGTTTAGGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGTTACTTGAG
TAAATAAAAAAACTTAGA
Found at i:64105047 original size:22 final size:22
Alignment explanation
Indices: 64105018--64105074 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
64105008 ATATCCAAAC
* *
64105018 AATAACAACAAATTAGTAGTAA
1 AATAACAACAAAATAGTAGCAA
*
64105040 TAA-AACAACAAAATGGTAGCAA
1 -AATAACAACAAAATAGTAGCAA
64105062 AATAACAACAAAA
1 AATAACAACAAAA
64105075 AAGAATATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.63, C:0.12, G:0.09, T:0.16
Consensus pattern (22 bp):
AATAACAACAAAATAGTAGCAA
Found at i:64105462 original size:28 final size:30
Alignment explanation
Indices: 64105406--64105480 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 30
64105396 TTAATTTAGT
*
64105406 AAAA-ATAAAATTATACTTTAATTCCTTTTA
1 AAAATATAAAATTATAATTTAATT-CTTTTA
64105436 AAAATATAAAATT-TAATTTAATT-TTTTA
1 AAAATATAAAATTATAATTTAATTCTTTTA
* *
64105464 AAATTATAAAAATATAA
1 AAAATATAAAATTATAA
64105481 ACTATTAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
28 16 0.40
29 3 0.08
30 13 0.32
31 8 0.20
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (30 bp):
AAAATATAAAATTATAATTTAATTCTTTTA
Found at i:64105739 original size:16 final size:14
Alignment explanation
Indices: 64105705--64105745 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
64105695 ATAATTTGAG
64105705 ATTTAATTTTTATA
1 ATTTAATTTTTATA
*
64105719 TTTTAATTTTGATATA
1 ATTTAATTTT--TATA
64105735 ATTTAATTTTT
1 ATTTAATTTTT
64105746 CATTTTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.43
16 13 0.57
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
ATTTAATTTTTATA
Found at i:64105984 original size:24 final size:24
Alignment explanation
Indices: 64105955--64106006 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
64105945 TTAATAAAGA
64105955 GAAGGAAAATTTTTCACTTATTTG
1 GAAGGAAAATTTTTCACTTATTTG
64105979 GAAGGAAAATTTTTCACTTATTTG
1 GAAGGAAAATTTTTCACTTATTTG
64106003 GAAG
1 GAAG
64106007 AGGTCTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (24 bp):
GAAGGAAAATTTTTCACTTATTTG
Found at i:64106096 original size:22 final size:22
Alignment explanation
Indices: 64106054--64106096 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
64106044 TATTTTTAAG
* *
64106054 TTTAGTTTTGTACTAATTATTC
1 TTTAGTTTTGTACCAACTATTC
64106076 TTTA-TTTTGTATCCAACTATT
1 TTTAGTTTTGTA-CCAACTATT
64106097 ATAATTCATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.58
Consensus pattern (22 bp):
TTTAGTTTTGTACCAACTATTC
Found at i:64111250 original size:50 final size:50
Alignment explanation
Indices: 64111135--64111477 Score: 569
Period size: 50 Copynumber: 6.8 Consensus size: 50
64111125 GATAATAACA
* ** * *
64111135 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
64111186 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
64111236 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64111286 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
64111336 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64111386 TGTCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64111436 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
64111478 TTACCCAAAT
Statistics
Matches: 275, Mismatches: 17, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
50 242 0.88
51 33 0.12
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:64111593 original size:13 final size:13
Alignment explanation
Indices: 64111572--64111602 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
64111562 GCTTAGATCA
*
64111572 TCATCAAATAAAT
1 TCATAAAATAAAT
64111585 TCATAAAATAAAT
1 TCATAAAATAAAT
64111598 TCATA
1 TCATA
64111603 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:64118465 original size:50 final size:50
Alignment explanation
Indices: 64118350--64118642 Score: 478
Period size: 50 Copynumber: 5.8 Consensus size: 50
64118340 GATAATAACA
* ** * *
64118350 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
64118401 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64118451 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64118501 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
64118551 TGCCAATACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
64118601 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
64118643 TTACCCAAAT
Statistics
Matches: 227, Mismatches: 15, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
50 194 0.85
51 33 0.15
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:64118758 original size:13 final size:13
Alignment explanation
Indices: 64118737--64118767 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
64118727 GCTTAGATCA
*
64118737 TCATCAAATAAAT
1 TCATAAAATAAAT
64118750 TCATAAAATAAAT
1 TCATAAAATAAAT
64118763 TCATA
1 TCATA
64118768 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:64122323 original size:22 final size:22
Alignment explanation
Indices: 64122281--64122324 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
64122271 GACTCTTCTA
64122281 AAATAAAAAATATTATAAAATTT
1 AAATAAAAAATA-TATAAAATTT
64122304 AAATAAATAAATA-ATAAAATT
1 AAATAAA-AAATATATAAAATT
64122325 ATAATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 8 0.40
23 7 0.35
24 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATAAAAAATATATAAAATTT
Found at i:64123649 original size:50 final size:49
Alignment explanation
Indices: 64123569--64123669 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 49
64123559 CCTATATATT
* * *
64123569 TTTCATTCGGTTATTTTTGTCGCCATCTTCACTATTCTTCTTCTTTTTC
1 TTTCATTCGGTTATTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC
*
64123618 TTTCATTCGGTTGTTTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC
1 TTTCATTCGGTT-ATTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC
64123668 TT
1 TT
64123670 CTTCTTCTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
49 12 0.26
50 35 0.74
ACGTcount: A:0.10, C:0.26, G:0.08, T:0.56
Consensus pattern (49 bp):
TTTCATTCGGTTATTTTTGTCACCATCTTCACTACTCTTCTTCTTCTTC
Found at i:64123662 original size:3 final size:3
Alignment explanation
Indices: 64123654--64123681 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
64123644 TCTTCACTAC
64123654 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
64123682 TTTAACGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:64123990 original size:15 final size:15
Alignment explanation
Indices: 64123970--64123999 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
64123960 CAAGGGTGAG
64123970 CTTTTTCTTCCTTTT
1 CTTTTTCTTCCTTTT
*
64123985 CTTTTTCTTTCTTTT
1 CTTTTTCTTCCTTTT
64124000 TTATAGTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (15 bp):
CTTTTTCTTCCTTTT
Found at i:64145780 original size:18 final size:18
Alignment explanation
Indices: 64145740--64145772 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64145730 ATTAATATAA
64145740 TAAATTTAGTATTAATTG
1 TAAATTTAGTATTAATTG
64145758 TAAATTT-GT-TTAATT
1 TAAATTTAGTATTAATT
64145773 TGTCAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTATTAATTG
Found at i:64148647 original size:4 final size:4
Alignment explanation
Indices: 64148629--64148675 Score: 76
Period size: 4 Copynumber: 11.8 Consensus size: 4
64148619 TATGATTGCA
* *
64148629 TATG TACG TACG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
64148676 ATGTGTTACG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:64156032 original size:11 final size:11
Alignment explanation
Indices: 64156016--64156040 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64156006 GAACTTGACA
64156016 ACTCTTCTAAT
1 ACTCTTCTAAT
64156027 ACTCTTCTAAT
1 ACTCTTCTAAT
64156038 ACT
1 ACT
64156041 AGGGCATGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (11 bp):
ACTCTTCTAAT
Found at i:64156528 original size:23 final size:24
Alignment explanation
Indices: 64156491--64156543 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
64156481 AAAACAAAAA
* *
64156491 AAAAAAAAAACCAAAGGGGGAGAG
1 AAAAAAAAAACCAAAGAGAGAGAG
*
64156515 AAAAAAAATA-CAAAGAGAGAGAG
1 AAAAAAAAAACCAAAGAGAGAGAG
*
64156538 GAAAAA
1 AAAAAA
64156544 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.68, C:0.06, G:0.25, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAACCAAAGAGAGAGAG
Found at i:64169591 original size:73 final size:73
Alignment explanation
Indices: 64169504--64169689 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
64169494 ACAACTTGAC
*
64169504 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
64169569 CACTAACA
66 CACTAACA
64169577 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
64169642 CACTAACA
66 CACTAACA
64169650 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
64169690 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.27
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:64169698 original size:3 final size:3
Alignment explanation
Indices: 64169690--64169727 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
64169680 ATTACATCCA
64169690 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
64169728 AACATGTGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:64174032 original size:73 final size:73
Alignment explanation
Indices: 64173945--64174130 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
64173935 ACAACTTGAC
*
64173945 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
64174010 CACTAACA
66 CACTAACA
64174018 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
64174083 CACTAACA
66 CACTAACA
64174091 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
64174131 AATAATAATA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.27
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:64174139 original size:3 final size:3
Alignment explanation
Indices: 64174131--64174162 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
64174121 ATTACATCCA
64174131 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
64174163 AACATGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:64183142 original size:21 final size:21
Alignment explanation
Indices: 64183116--64183156 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
64183106 AGATGAGCAA
* *
64183116 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
64183137 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
64183157 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:64195464 original size:17 final size:19
Alignment explanation
Indices: 64195437--64195471 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
64195427 TAAAACATTT
64195437 ATTGTTAATATAT-TTATA
1 ATTGTTAATATATATTATA
64195455 ATTG-TAATATATATTAT
1 ATTGTTAATATATATTAT
64195472 TAAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (19 bp):
ATTGTTAATATATATTATA
Found at i:64219372 original size:3 final size:3
Alignment explanation
Indices: 64219366--64219404 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
64219356 ACTGTCACCT
64219366 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
64219405 AGAAGATTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:64219587 original size:6 final size:6
Alignment explanation
Indices: 64219576--64219609 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
64219566 AAAGTTGAAC
64219576 TATACA TATACA TATACA TATACA TATACA TATA
1 TATACA TATACA TATACA TATACA TATACA TATA
64219610 TATACCTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
TATACA
Found at i:64223838 original size:20 final size:21
Alignment explanation
Indices: 64223800--64223838 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64223790 TCTAGATTAT
*
64223800 ATTTTTTATATAAAGTCTTTC
1 ATTTTTTAAATAAAGTCTTTC
64223821 ATTTTTTAAATAAA-TCTT
1 ATTTTTTAAATAAAGTCTT
64223839 CGAGTCTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (21 bp):
ATTTTTTAAATAAAGTCTTTC
Found at i:64224563 original size:19 final size:19
Alignment explanation
Indices: 64224541--64224579 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
64224531 TCGCCACTAA
64224541 TTATTAGTACAAGTAGGGG
1 TTATTAGTACAAGTAGGGG
64224560 TTATTAGTACAAGTAGGGG
1 TTATTAGTACAAGTAGGGG
64224579 T
1 T
64224580 GAGTAAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.33
Consensus pattern (19 bp):
TTATTAGTACAAGTAGGGG
Found at i:64224900 original size:18 final size:19
Alignment explanation
Indices: 64224863--64224901 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64224853 AATTATTTAA
64224863 AAAATCTAAAAAATATAAT
1 AAAATCTAAAAAATATAAT
* *
64224882 AAAATTTAATAAA-ATAAT
1 AAAATCTAAAAAATATAAT
64224900 AA
1 AA
64224902 TTTTGGAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAATCTAAAAAATATAAT
Found at i:64247372 original size:13 final size:13
Alignment explanation
Indices: 64247354--64247378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64247344 AAATATATAA
64247354 TTTTGAAAAGCAC
1 TTTTGAAAAGCAC
64247367 TTTTGAAAAGCA
1 TTTTGAAAAGCA
64247379 ATAAGAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
TTTTGAAAAGCAC
Found at i:64259180 original size:16 final size:16
Alignment explanation
Indices: 64259161--64259192 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64259151 ATACGTATAT
64259161 AACCAAATAATTACAC
1 AACCAAATAATTACAC
64259177 AACCAAATAATTACAC
1 AACCAAATAATTACAC
64259193 GTGACATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.25, G:0.00, T:0.19
Consensus pattern (16 bp):
AACCAAATAATTACAC
Found at i:64263697 original size:4 final size:4
Alignment explanation
Indices: 64263690--64263724 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
64263680 TCCATATATA
64263690 TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
64263725 TGAAGTGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:64270967 original size:31 final size:29
Alignment explanation
Indices: 64270932--64270994 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 29
64270922 ATATTAAAAC
*
64270932 TATACATGAACTTTGATTCAATATGTAATTT
1 TATACATGAACTTTAATTC--TATGTAATTT
*
64270963 TATACATGAACTTTAATTCTGTGTAATTT
1 TATACATGAACTTTAATTCTATGTAATTT
64270992 TAT
1 TAT
64270995 GCATACAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 12 0.40
31 18 0.60
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (29 bp):
TATACATGAACTTTAATTCTATGTAATTT
Found at i:64288085 original size:6 final size:6
Alignment explanation
Indices: 64288074--64288104 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
64288064 CAATGAGTAT
64288074 CTTAGC CTTAGC CTTAGC CTTAGC CTTAGC C
1 CTTAGC CTTAGC CTTAGC CTTAGC CTTAGC C
64288105 CATTTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32
Consensus pattern (6 bp):
CTTAGC
Found at i:64307200 original size:4 final size:4
Alignment explanation
Indices: 64307191--64307231 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
64307181 CCACAAGACA
64307191 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
64307232 CACGTATATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:64330765 original size:41 final size:41
Alignment explanation
Indices: 64330708--64330790 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
64330698 TCACGTCAAG
64330708 CCTCATTTCTTTACATGTGAGGGATTTAACAAAAAACTTTA
1 CCTCATTTCTTTACATGTGAGGGATTTAACAAAAAACTTTA
64330749 CCTCATTTCTTTACATGTGAGGGATTTAACAAAAAACTTTA
1 CCTCATTTCTTTACATGTGAGGGATTTAACAAAAAACTTTA
64330790 C
1 C
64330791 TTATTAAAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (41 bp):
CCTCATTTCTTTACATGTGAGGGATTTAACAAAAAACTTTA
Found at i:64332119 original size:27 final size:29
Alignment explanation
Indices: 64332075--64332128 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
64332065 TATATAATTA
* *
64332075 ATTTTAATTTTTACAATA-TAAAATAAAT
1 ATTTTAATATTTAAAATAGTAAAATAAAT
64332103 ATTTT-ATATTTAAAATAGTAAAATAA
1 ATTTTAATATTTAAAATAGTAAAATAA
64332129 GTAAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (29 bp):
ATTTTAATATTTAAAATAGTAAAATAAAT
Found at i:64332258 original size:18 final size:19
Alignment explanation
Indices: 64332227--64332262 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
64332217 CTATTTTATT
*
64332227 AAAATAAATCTAAAAAATA
1 AAAATAAATATAAAAAATA
64332246 AAAAT-AATATAAAAAAT
1 AAAATAAATATAAAAAAT
64332263 CGAAAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATAAATATAAAAAATA
Found at i:64332824 original size:17 final size:16
Alignment explanation
Indices: 64332802--64332847 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 16
64332792 CACAAACTTC
*
64332802 TTTCTACTTTATTTATT
1 TTTCTACTTT-TTCATT
64332819 TTTCTATCCTTTTTCATT
1 TTTCTA--CTTTTTCATT
64332837 TTTCTACTTTT
1 TTTCTACTTTT
64332848 AATTCCATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 5 0.19
17 6 0.23
18 11 0.42
19 4 0.15
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTCTACTTTTTCATT
Found at i:64340041 original size:113 final size:113
Alignment explanation
Indices: 64339843--64340070 Score: 420
Period size: 113 Copynumber: 2.0 Consensus size: 113
64339833 ATTAGTAGAG
**
64339843 TTAATTAAACAATTGTCACCAGTCCATCATATTTCTAGGAATTAACACACCAATAAAGGAGATGC
1 TTAATTAAACAATTGTCACCAACCCATCATATTTCTAGGAATTAACACACCAATAAAGGAGATGC
*
64339908 CAAATACATATATGATATTCAATCAAGACATGTTTTTTCTTTTGCAAA
66 CAAATACATATATGATATTCAATCAAGACAGGTTTTTTCTTTTGCAAA
*
64339956 TTAATTAAACAATTGTCACCAACCCATCATATTTCTAGGAATTAACACACCAATAAAGGAGATGG
1 TTAATTAAACAATTGTCACCAACCCATCATATTTCTAGGAATTAACACACCAATAAAGGAGATGC
64340021 CAAATACATATATGATATTCAATCAAGACAGGTTTTTTCTTTTGCAAA
66 CAAATACATATATGATATTCAATCAAGACAGGTTTTTTCTTTTGCAAA
64340069 TT
1 TT
64340071 TAGTAATTAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (113 bp):
TTAATTAAACAATTGTCACCAACCCATCATATTTCTAGGAATTAACACACCAATAAAGGAGATGC
CAAATACATATATGATATTCAATCAAGACAGGTTTTTTCTTTTGCAAA
Found at i:64348937 original size:19 final size:20
Alignment explanation
Indices: 64348900--64348943 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
64348890 TTAACAAAAA
64348900 TTATAGAAAAATTCAAAATAT
1 TTATAGAAAAATTCAAAAT-T
*
64348921 TTATA-AAAATTTC-AAATT
1 TTATAGAAAAATTCAAAATT
64348939 TTATA
1 TTATA
64348944 TTTTTAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 4 0.18
20 7 0.32
21 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (20 bp):
TTATAGAAAAATTCAAAATT
Found at i:64355841 original size:18 final size:19
Alignment explanation
Indices: 64355818--64355854 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
64355808 GGACGATTTA
64355818 GAACATGAAGAA-AAAAAT
1 GAACATGAAGAAGAAAAAT
64355836 GAACATGAAGAAGAAAAAT
1 GAACATGAAGAAGAAAAAT
64355855 ATTTCTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.65, C:0.05, G:0.19, T:0.11
Consensus pattern (19 bp):
GAACATGAAGAAGAAAAAT
Found at i:64356132 original size:21 final size:21
Alignment explanation
Indices: 64356096--64356137 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64356086 CTCCAAAACA
*
64356096 AGGGAAAATGGGTTACATTTT
1 AGGGAAAATGGCTTACATTTT
* *
64356117 AGGGAAAATGTCTTACCTTTT
1 AGGGAAAATGGCTTACATTTT
64356138 CAATTTCCGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (21 bp):
AGGGAAAATGGCTTACATTTT
Found at i:64356550 original size:20 final size:20
Alignment explanation
Indices: 64356525--64356562 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64356515 AATATTTTGC
*
64356525 AGTAAATCATTTTACAGAGA
1 AGTAAAACATTTTACAGAGA
*
64356545 AGTAAAACATTTTCCAGA
1 AGTAAAACATTTTACAGA
64356563 AATCATTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAGA
Found at i:64381887 original size:22 final size:22
Alignment explanation
Indices: 64381843--64381925 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
64381833 GAACCTCAAC
64381843 GTGCTCTCTGATTATCAGCACATTA
1 GTGCTCTCTG-TT-T-AGCACATTA
*
64381868 GTGCTCTCTGTTTAGCACATTC
1 GTGCTCTCTGTTTAGCACATTA
* * * *
64381890 GTGTTCTCTGTGTAACACATCA
1 GTGCTCTCTGTTTAGCACATTA
* *
64381912 CTGCTCTCTATTTA
1 GTGCTCTCTGTTTA
64381926 TTAGTGCATA
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
22 35 0.73
23 1 0.02
24 2 0.04
25 10 0.21
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.40
Consensus pattern (22 bp):
GTGCTCTCTGTTTAGCACATTA
Done.