Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 213 of 213
Found at i:64383301 original size:10 final size:10
Alignment explanation
Indices: 64383288--64383331 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
64383278 AGTTTAATTA
64383288 TAATTAAACT
1 TAATTAAACT
64383298 TAATT-AA-T
1 TAATTAAACT
64383306 TAACTTAAACT
1 TAA-TTAAACT
64383317 TAATTAAACCT
1 TAATTAAA-CT
64383328 TAAT
1 TAAT
64383332 AACCAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 4 0.13
9 4 0.13
10 12 0.40
11 10 0.33
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (10 bp):
TAATTAAACT
Found at i:64383315 original size:19 final size:20
Alignment explanation
Indices: 64383281--64383323 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
64383271 TATAGTTAGT
64383281 TTAATTATAATTAAACTTAA
1 TTAATTATAATTAAACTTAA
*
64383301 TTAATTA-ACTTAAACTTAA
1 TTAATTATAATTAAACTTAA
64383320 TTAA
1 TTAA
64383324 ACCTTAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (20 bp):
TTAATTATAATTAAACTTAA
Found at i:64386054 original size:21 final size:21
Alignment explanation
Indices: 64386028--64386068 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
64386018 ATTACATTTT
*
64386028 CAAGTTTTCAATTTCAATTAA
1 CAAGTTTCCAATTTCAATTAA
64386049 CAAGTTTCCAATTTCAATTA
1 CAAGTTTCCAATTTCAATTA
64386069 TAGTGTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.41
Consensus pattern (21 bp):
CAAGTTTCCAATTTCAATTAA
Found at i:64395898 original size:27 final size:27
Alignment explanation
Indices: 64395868--64395954 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 27
64395858 AGCTTAAAGT
*
64395868 TTATTTTTCTGCATTTACTTCTTGTTC
1 TTATTGTTCTGCATTTACTTCTTGTTC
** ***
64395895 TTATTGTTCT---TAAAGCTTAAAG-T-
1 TTATTGTTCTGCATTTA-CTTCTTGTTC
*
64395918 TTATTTTTCTGCATTTACTTCTTGTTC
1 TTATTGTTCTGCATTTACTTCTTGTTC
64395945 TTATTGTTCT
1 TTATTGTTCT
64395955 TAGTGTTAGT
Statistics
Matches: 41, Mismatches: 13, Indels: 12
0.62 0.20 0.18
Matches are distributed among these distances:
23 9 0.22
24 3 0.07
25 8 0.20
26 3 0.07
27 18 0.44
ACGTcount: A:0.16, C:0.15, G:0.09, T:0.60
Consensus pattern (27 bp):
TTATTGTTCTGCATTTACTTCTTGTTC
Found at i:64395920 original size:50 final size:50
Alignment explanation
Indices: 64395858--64395956 Score: 198
Period size: 50 Copynumber: 2.0 Consensus size: 50
64395848 ATTCTACCTT
64395858 AGCTTAAAGTTTATTTTTCTGCATTTACTTCTTGTTCTTATTGTTCTTAA
1 AGCTTAAAGTTTATTTTTCTGCATTTACTTCTTGTTCTTATTGTTCTTAA
64395908 AGCTTAAAGTTTATTTTTCTGCATTTACTTCTTGTTCTTATTGTTCTTA
1 AGCTTAAAGTTTATTTTTCTGCATTTACTTCTTGTTCTTATTGTTCTTA
64395957 GTGTTAGTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.19, C:0.14, G:0.10, T:0.57
Consensus pattern (50 bp):
AGCTTAAAGTTTATTTTTCTGCATTTACTTCTTGTTCTTATTGTTCTTAA
Found at i:64401980 original size:9 final size:9
Alignment explanation
Indices: 64401957--64402008 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
64401947 GGTATTTTTC
*
64401957 GGTAATTTG
1 GGTAATTCG
*
64401966 GTTAATTCG
1 GGTAATTCG
64401975 GGTAATTCG
1 GGTAATTCG
64401984 GGTAATTCG
1 GGTAATTCG
64401993 GGTAATTCG
1 GGTAATTCG
64402002 GGTAATT
1 GGTAATT
64402009 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 40 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:64403011 original size:87 final size:87
Alignment explanation
Indices: 64402903--64403066 Score: 258
Period size: 87 Copynumber: 1.9 Consensus size: 87
64402893 AGTTTTAAAC
* * *
64402903 AACAACCTCCTCAAGGACTCCTGGAGAAGCAACAAAGTTTTAAACAATCTGAAAAACAGCAGAGT
1 AACAACCACCTCAAGGACTCCTGGAGAAGCAAAAAAGTTTTAAACAATCTGAAAAACAACAGAGT
*
64402968 TTTCGCGGTGTTATGACAGAAA
66 TTCCGCGGTGTTATGACAGAAA
*
64402990 AACAACCACCTCAACGG-CTCCTGGAGAAGCAAAAAAGTTTTAAACAATCTGAAAAGCAACAGAG
1 AACAACCACCTCAA-GGACTCCTGGAGAAGCAAAAAAGTTTTAAACAATCTGAAAAACAACAGAG
*
64403054 TTTCCGTGGTGTT
65 TTTCCGCGGTGTT
64403067 TCAAGTGAGA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 68 0.97
88 2 0.03
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (87 bp):
AACAACCACCTCAAGGACTCCTGGAGAAGCAAAAAAGTTTTAAACAATCTGAAAAACAACAGAGT
TTCCGCGGTGTTATGACAGAAA
Found at i:64417129 original size:40 final size:40
Alignment explanation
Indices: 64417082--64417160 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
64417072 ATAATTATGT
* * * *
64417082 ATAATTATGTCTGTTTTGTTGATATTATTATTTAGAAAAG
1 ATAATTATATCTCTTTTATTGATATTATTATTCAGAAAAG
*
64417122 ATAATTATATTTCTTTTATTGATATTATTATTCAGAAAA
1 ATAATTATATCTCTTTTATTGATATTATTATTCAGAAAA
64417161 TATATATATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (40 bp):
ATAATTATATCTCTTTTATTGATATTATTATTCAGAAAAG
Found at i:64420836 original size:16 final size:16
Alignment explanation
Indices: 64420815--64420853 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
64420805 ATGAAATAGC
64420815 ATAAAT-AAACAATTAA
1 ATAAATCAAA-AATTAA
64420831 ATAAATCAAAAATTAA
1 ATAAATCAAAAATTAA
64420847 ATTAAAT
1 A-TAAAT
64420854 TGATAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAATCAAAAATTAA
Found at i:64428449 original size:32 final size:32
Alignment explanation
Indices: 64428373--64428438 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
64428363 AATACTTTAA
64428373 AAGAAATAGAGAAGGTAGGAAAACAGTGGGAG
1 AAGAAATAGAGAAGGTAGGAAAACAGTGGGAG
64428405 AAGAAATAGAGAAGGTAGGAAAACAGTGGGAG
1 AAGAAATAGAGAAGGTAGGAAAACAGTGGGAG
64428437 AA
1 AA
64428439 ATAGAAGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.52, C:0.03, G:0.36, T:0.09
Consensus pattern (32 bp):
AAGAAATAGAGAAGGTAGGAAAACAGTGGGAG
Found at i:64434964 original size:31 final size:31
Alignment explanation
Indices: 64434929--64434994 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
64434919 CTTAACAACC
* *
64434929 TAATGACTT-AAATAAAAACTTTTGAATAGTT
1 TAATGA-TTAAAATAAAAACTCTCGAATAGTT
*
64434960 TAATGATTAAAATGAAAACTCTCGAATAGTT
1 TAATGATTAAAATAAAAACTCTCGAATAGTT
64434991 TAAT
1 TAAT
64434995 CACTATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 2 0.06
31 29 0.94
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (31 bp):
TAATGATTAAAATAAAAACTCTCGAATAGTT
Found at i:64435593 original size:19 final size:19
Alignment explanation
Indices: 64435569--64435606 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
64435559 TTATATCAAG
64435569 GCACCAAGTTTGAGCCTAT
1 GCACCAAGTTTGAGCCTAT
64435588 GCACCAAGTTTGAGCCTAT
1 GCACCAAGTTTGAGCCTAT
64435607 AAAAACATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (19 bp):
GCACCAAGTTTGAGCCTAT
Found at i:64435899 original size:34 final size:34
Alignment explanation
Indices: 64435852--64435927 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
64435842 AGGGAGATTT
64435852 TTAGCTTGCTAATAGGAGTAGGAAGCTAAGTTTG
1 TTAGCTTGCTAATAGGAGTAGGAAGCTAAGTTTG
* * *
64435886 TTAGCTTGGTAATAGGAGTAGGAAGTTGAGTTTG
1 TTAGCTTGCTAATAGGAGTAGGAAGCTAAGTTTG
64435920 TTAGCTTG
1 TTAGCTTG
64435928 AGTCATGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.26, C:0.07, G:0.32, T:0.36
Consensus pattern (34 bp):
TTAGCTTGCTAATAGGAGTAGGAAGCTAAGTTTG
Found at i:64440955 original size:32 final size:33
Alignment explanation
Indices: 64440919--64440982 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
64440909 TCAATACTTG
* *
64440919 ATTTCATTTTTCAATTCACATTTCAT-TTCATC
1 ATTTCATATTTCAATTCACATATCATGTTCATC
* *
64440951 ATTTCATATTTCATTTCTCATATCATGTTCAT
1 ATTTCATATTTCAATTCACATATCATGTTCAT
64440983 TTCTCATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.25, C:0.20, G:0.02, T:0.53
Consensus pattern (33 bp):
ATTTCATATTTCAATTCACATATCATGTTCATC
Found at i:64440983 original size:18 final size:19
Alignment explanation
Indices: 64440940--64440989 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
64440930 CAATTCACAT
* *
64440940 TTCATTTCATCATTTCATAT
1 TTCATTTC-TCATATCATAG
64440960 TTCATTTCTCATATCAT-G
1 TTCATTTCTCATATCATAG
64440978 TTCATTTCTCAT
1 TTCATTTCTCAT
64440990 TTTTGCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 12 0.43
19 8 0.29
20 8 0.29
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.54
Consensus pattern (19 bp):
TTCATTTCTCATATCATAG
Found at i:64447529 original size:6 final size:6
Alignment explanation
Indices: 64447518--64447544 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
64447508 CAGCCAAAAC
64447518 ATCCAG ATCCAG ATCCAG ATCCAG ATC
1 ATCCAG ATCCAG ATCCAG ATCCAG ATC
64447545 ATCATCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCCAG
Found at i:64449293 original size:16 final size:16
Alignment explanation
Indices: 64449263--64449306 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
64449253 AAAAAATAGA
*
64449263 TTTAAATATTTTGTGGT
1 TTTAAATA-TTTGTGAT
64449280 TTTAAATATTTGTGAT
1 TTTAAATATTTGTGAT
*
64449296 TATAAAT-TTTG
1 TTTAAATATTTG
64449307 AACAAAAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 4 0.16
16 13 0.52
17 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.57
Consensus pattern (16 bp):
TTTAAATATTTGTGAT
Found at i:64451057 original size:22 final size:22
Alignment explanation
Indices: 64451012--64451057 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
64451002 TTATTCTGAT
*
64451012 TTTTATTTTTATTTTCTTTTTC
1 TTTTATTTTTATTTTCTTTCTC
*
64451034 TTTTGTTTTTATTTAT-TTTCTC
1 TTTTATTTTTATTT-TCTTTCTC
64451056 TT
1 TT
64451058 CCTCCCTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.09, C:0.09, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTTATTTTTATTTTCTTTCTC
Found at i:64458524 original size:2 final size:2
Alignment explanation
Indices: 64458517--64458553 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
64458507 TTATTCGCCG
64458517 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
64458554 TTTTTTGCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:64468575 original size:19 final size:20
Alignment explanation
Indices: 64468551--64468589 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
64468541 CAATTGTTTT
64468551 AAAA-TTAA-ATAAGTTTAAA
1 AAAATTTAATATAA-TTTAAA
64468570 AAAATTTAATATAATTTAAA
1 AAAATTTAATATAATTTAAA
64468590 TTTTTAAGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
AAAATTTAATATAATTTAAA
Found at i:64473388 original size:7 final size:7
Alignment explanation
Indices: 64473376--64473440 Score: 64
Period size: 7 Copynumber: 9.6 Consensus size: 7
64473366 TTGGGGTTTC
64473376 GGTTTAG
1 GGTTTAG
64473383 GGTTTAG
1 GGTTTAG
64473390 GGTTTAG
1 GGTTTAG
*
64473397 GGGTTATG
1 GGTTTA-G
64473405 GGTTT-G
1 GGTTTAG
*
64473411 GGTTTGG
1 GGTTTAG
64473418 GGTTT-G
1 GGTTTAG
*
64473424 GG-TTGG
1 GGTTTAG
*
64473430 GGTTTGG
1 GGTTTAG
64473437 GGTT
1 GGTT
64473441 GGGGTTGGGG
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
5 2 0.04
6 12 0.23
7 33 0.63
8 5 0.10
ACGTcount: A:0.06, C:0.00, G:0.51, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:64473399 original size:28 final size:28
Alignment explanation
Indices: 64473363--64473422 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
64473353 TTAGTGATTT
*
64473363 GTTTTGGGGTT-TCGGTTTAGGGTTTAGG
1 GTTTAGGGGTTATCGGTTT-GGGTTTAGG
* *
64473391 GTTTAGGGGTTATGGGTTTGGGTTTGGG
1 GTTTAGGGGTTATCGGTTTGGGTTTAGG
64473419 GTTT
1 GTTT
64473423 GGGTTGGGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 22 0.79
29 6 0.21
ACGTcount: A:0.07, C:0.02, G:0.45, T:0.47
Consensus pattern (28 bp):
GTTTAGGGGTTATCGGTTTGGGTTTAGG
Found at i:64473414 original size:6 final size:6
Alignment explanation
Indices: 64473369--64473455 Score: 75
Period size: 6 Copynumber: 13.5 Consensus size: 6
64473359 ATTTGTTTTG
*
64473369 GGGTTT CGGTTT AGGGTTT AGGGTTT AGGGGTTAT GGGTTT GGGTTT GGGGTTT
1 GGGTTT GGGTTT -GGGTTT -GGGTTT --GGGTT-T GGGTTT GGGTTT -GGGTTT
* * * *
64473423 GGGTTG GGGTTT GGGGTT GGGGTT GGGGTT GGG
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGG
64473456 GTGGGGTTGG
Statistics
Matches: 71, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
6 42 0.59
7 23 0.32
8 5 0.07
9 1 0.01
ACGTcount: A:0.05, C:0.01, G:0.54, T:0.40
Consensus pattern (6 bp):
GGGTTT
Found at i:64473420 original size:13 final size:13
Alignment explanation
Indices: 64473365--64473457 Score: 84
Period size: 13 Copynumber: 7.1 Consensus size: 13
64473355 AGTGATTTGT
*
64473365 TTTGGGGTTTCGG
1 TTTGGGGTTTGGG
*
64473378 TTTAGGGTTTAGGG
1 TTTGGGGTTT-GGG
64473392 TTTAGGGGTTATGGG
1 TTT-GGGGTT-TGGG
64473407 TTT-GGGTTTGGGG
1 TTTGGGGTTT-GGG
*
64473420 TTT-GGGTTGGGG
1 TTTGGGGTTTGGG
64473432 TTTGGGG-TTGGG
1 TTTGGGGTTTGGG
* *
64473444 GTTGGGGTTGGGG
1 TTTGGGGTTTGGG
64473457 T
1 T
64473458 GGGGTTGGGG
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
12 17 0.26
13 32 0.48
14 5 0.08
15 11 0.17
16 1 0.02
ACGTcount: A:0.04, C:0.01, G:0.53, T:0.42
Consensus pattern (13 bp):
TTTGGGGTTTGGG
Found at i:64473456 original size:6 final size:6
Alignment explanation
Indices: 64473403--64473541 Score: 108
Period size: 6 Copynumber: 23.2 Consensus size: 6
64473393 TTAGGGGTTA
* * *
64473403 TGGGTT TGGGTT TGGGGT TTGGGT TGGGGTT TGGGGT TGGGGT TGGGGT
1 TGGGGT TGGGGT TGGGGT TGGGGT TGGGG-T TGGGGT TGGGGT TGGGGT
* * * * *
64473452 TGGGG- TGGGGT TGGGG- -GGGG- -GGGGG GGGGGG GGGGGT TGGGGGG
1 TGGGGT TGGGGT TGGGGT TGGGGT TGGGGT TGGGGT TGGGGT T-GGGGT
* *
64473496 GGGGGT TGGGGT TGGGGGT TGGGGT TCGGGT TCGGGGT TCGGGGT T
1 TGGGGT TGGGGT T-GGGGT TGGGGT TGGGGT T-GGGGT T-GGGGT T
64473542 TTAGGGTTGG
Statistics
Matches: 115, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
4 8 0.07
5 5 0.04
6 74 0.64
7 28 0.24
ACGTcount: A:0.00, C:0.02, G:0.69, T:0.29
Consensus pattern (6 bp):
TGGGGT
Found at i:64473513 original size:1 final size:1
Alignment explanation
Indices: 64473464--64473500 Score: 56
Period size: 1 Copynumber: 37.0 Consensus size: 1
64473454 GGGTGGGGTT
**
64473464 GGGGGGGGGGGGGGGGGGGGGGGGTTGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
64473501 TTGGGGTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.95, T:0.05
Consensus pattern (1 bp):
G
Found at i:64473520 original size:13 final size:13
Alignment explanation
Indices: 64473404--64473541 Score: 109
Period size: 13 Copynumber: 11.4 Consensus size: 13
64473394 TAGGGGTTAT
* *
64473404 GGGTTTGGGTTTG
1 GGGTTGGGGTTGG
*
64473417 GGGTTTGGGTTGG
1 GGGTTGGGGTTGG
*
64473430 GGTTTGGGGTT-G
1 GGGTTGGGGTTGG
64473442 GGGTTGGGGTT-G
1 GGGTTGGGGTTGG
64473454 GGG-TGGGGTTGG
1 GGGTTGGGGTTGG
64473466 GGG--GGGG--GG
1 GGGTTGGGGTTGG
*
64473475 GGG--GGGG-GGG
1 GGGTTGGGGTTGG
**
64473485 GGGTTGGGGGGGG
1 GGGTTGGGGTTGG
64473498 GGGTTGGGGTTGG
1 GGGTTGGGGTTGG
*
64473511 GGGTTGGGGTT-C
1 GGGTTGGGGTTGG
*
64473523 GGGTTCGGGGTTCG
1 GGGTT-GGGGTTGG
64473537 GGGTT
1 GGGTT
64473542 TTAGGGTTGG
Statistics
Matches: 110, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
9 9 0.08
10 5 0.05
11 11 0.10
12 28 0.25
13 52 0.47
14 5 0.05
ACGTcount: A:0.00, C:0.02, G:0.70, T:0.28
Consensus pattern (13 bp):
GGGTTGGGGTTGG
Found at i:64473521 original size:19 final size:19
Alignment explanation
Indices: 64473404--64473541 Score: 118
Period size: 19 Copynumber: 7.3 Consensus size: 19
64473394 TAGGGGTTAT
* * *
64473404 GGGTTTGGGTTTGGGGTTT
1 GGGTTGGGGTTGGGGGTTG
*
64473423 GGGTTGGGGTTTGGGGTTG
1 GGGTTGGGGTTGGGGGTTG
64473442 GGGTTGGGGTT-GGGG-TG
1 GGGTTGGGGTTGGGGGTTG
** **
64473459 GGGTTGGGGGGGGGGGGGGG
1 GGGTT-GGGGTTGGGGGTTG
** **
64473479 GGGGGGGGGTTGGGGGGGG
1 GGGTTGGGGTTGGGGGTTG
64473498 GGGTTGGGGTTGGGGGTTG
1 GGGTTGGGGTTGGGGGTTG
* *
64473517 GGGTTCGGGTTCGGGGTTCG
1 GGGTTGGGGTTGGGGGTT-G
64473537 GGGTT
1 GGGTT
64473542 TTAGGGTTGG
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
17 7 0.07
18 8 0.08
19 75 0.75
20 10 0.10
ACGTcount: A:0.00, C:0.02, G:0.70, T:0.28
Consensus pattern (19 bp):
GGGTTGGGGTTGGGGGTTG
Done.