Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 23 of 213
Found at i:6021459 original size:25 final size:25
Alignment explanation
Indices: 6021403--6021467 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
6021393 CCGGCCTATT
*
6021403 TTTAATAAACAAAAATTATTCTAAAA
1 TTTAA-AAAAAAAAATTATTCTAAAA
*
6021429 -TAAAAAAAAAAAATTATT-TAAATA
1 TTTAAAAAAAAAAATTATTCTAAA-A
*
6021453 TTTAAAATAAAAAAT
1 TTTAAAAAAAAAAAT
6021468 AAAAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 4 0.12
24 14 0.42
25 15 0.45
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (25 bp):
TTTAAAAAAAAAAATTATTCTAAAA
Found at i:6021748 original size:20 final size:19
Alignment explanation
Indices: 6021720--6021761 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
6021710 TTTCATATAA
6021720 ATTAAAAATTCATAAAAATT
1 ATTAAAAATTCAT-AAAATT
* *
6021740 ATTAGAAATTTATAAAATT
1 ATTAAAAATTCATAAAATT
6021759 ATT
1 ATT
6021762 TAAATATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTAAAAATTCATAAAATT
Found at i:6021832 original size:30 final size:30
Alignment explanation
Indices: 6021787--6021857 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
6021777 AGAAATTTTT
*
6021787 AAATGTTATAAAATTTTAGAAAAATATAGA
1 AAATATTATAAAATTTTAGAAAAATATAGA
* * *
6021817 AAATATTATACAATTTTTGAAAAATAT-CA
1 AAATATTATAAAATTTTAGAAAAATATAGA
6021846 AAA-ATTATAAAA
1 AAATATTATAAAA
6021858 AAGATAGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 8 0.22
29 4 0.11
30 24 0.67
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATATTATAAAATTTTAGAAAAATATAGA
Found at i:6026685 original size:17 final size:17
Alignment explanation
Indices: 6026663--6026695 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6026653 AAAATTGTAT
*
6026663 ATTCTTCTTTTGGTTTG
1 ATTCTTCTTTAGGTTTG
6026680 ATTCTTCTTTAGGTTT
1 ATTCTTCTTTAGGTTT
6026696 TCAAGCAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.15, T:0.64
Consensus pattern (17 bp):
ATTCTTCTTTAGGTTTG
Found at i:6036490 original size:3 final size:3
Alignment explanation
Indices: 6036482--6036544 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
6036472 GATCAAGAAC
6036482 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6036530 AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT
6036545 GAAAAGATAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6036922 original size:29 final size:31
Alignment explanation
Indices: 6036850--6036936 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 31
6036840 TGAAACATAG
* * *
6036850 AAAATATATAAAAGTATGTGTATATATATTTAT
1 AAAAT-TATAAAA-CATGTGTATGTATATGTAT
6036883 AAAATTA-AAAA-ATGTGTATGTATATGTAT
1 AAAATTATAAAACATGTGTATGTATATGTAT
* * *
6036912 -ATATTATAAAACGTATGTATGTATA
1 AAAATTATAAAACATGTGTATGTATA
6036937 CATGCATATA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
28 5 0.11
29 20 0.43
30 11 0.23
31 4 0.09
32 2 0.04
33 5 0.11
ACGTcount: A:0.47, C:0.01, G:0.11, T:0.40
Consensus pattern (31 bp):
AAAATTATAAAACATGTGTATGTATATGTAT
Found at i:6041654 original size:21 final size:21
Alignment explanation
Indices: 6041622--6041662 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
6041612 AGGCTCGAGG
6041622 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
6041643 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
6041663 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:6049612 original size:97 final size:97
Alignment explanation
Indices: 6049446--6049681 Score: 436
Period size: 97 Copynumber: 2.4 Consensus size: 97
6049436 TTGAAGTATG
* *
6049446 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATGTCCAAATTTAAGATTAAATTTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
*
6049511 CATATTTTAATTAAAATATAATTTAGTACTTA
66 CATATTTTAATTAAAATATAATTCAGTACTTA
6049543 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
*
6049608 CATATTTTAATTAAAATATAATTCGGTACTTA
66 CATATTTTAATTAAAATATAATTCAGTACTTA
6049640 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
1 TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAAT
6049682 TGTTATTAAA
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 135 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (97 bp):
TATAAACAATCAATCAAGTTCCAATTTCGATGCTTATATAATATCCAAATTTAAGATTAAATCTG
CATATTTTAATTAAAATATAATTCAGTACTTA
Found at i:6049754 original size:23 final size:23
Alignment explanation
Indices: 6049719--6049763 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6049709 CCTTATTTAA
**
6049719 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
6049742 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
6049764 AAAATGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:6053107 original size:16 final size:16
Alignment explanation
Indices: 6053086--6053127 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
6053076 TTATTAAATT
*
6053086 ATATATTTTAATTATA
1 ATATATTTTAATAATA
6053102 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
6053117 AT-TATGTTTAA
1 ATATAT-TTTAA
6053128 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:6053112 original size:15 final size:15
Alignment explanation
Indices: 6053077--6053118 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
6053067 TTAAGAATTT
*
6053077 TATTAAATTAT-ATA
1 TATTTAATTATAATA
6053091 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
6053105 TATTTAATAATAAT
1 TATTTAATTATAAT
6053119 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:6053242 original size:156 final size:156
Alignment explanation
Indices: 6053062--6053368 Score: 553
Period size: 156 Copynumber: 2.0 Consensus size: 156
6053052 TAAGAATATG
*
6053062 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
* * *
6053127 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
6053192 AATAATTTACCAAAACCAATTTCTGTT
131 AATAATTTACCAAAA-CAATTTCTGTT
6053219 AATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
6053283 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
6053348 AATCATTTACCAAAACAATTT
131 AATAATTTACCAAAACAATTT
6053369 TATGCTAAGG
Statistics
Matches: 145, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
155 6 0.04
156 134 0.92
157 5 0.03
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAATTTCTGTT
Found at i:6053255 original size:18 final size:17
Alignment explanation
Indices: 6053229--6053263 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6053219 AATTATAAGA
*
6053229 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
6053246 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
6053264 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:6053520 original size:16 final size:16
Alignment explanation
Indices: 6053499--6053534 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
6053489 GATTTGCTAT
6053499 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
6053515 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
6053531 TACA
1 TACA
6053535 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:6061883 original size:6 final size:6
Alignment explanation
Indices: 6061874--6061906 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
6061864 TATATATGTA
*
6061874 TATATG TATATG AATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TAT
6061907 TCTTTTTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (6 bp):
TATATG
Found at i:6061970 original size:16 final size:16
Alignment explanation
Indices: 6061949--6061984 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
6061939 TACTTTTTTT
6061949 TATATATGTATATCTA
1 TATATATGTATATCTA
*
6061965 TATATATGTATATGTA
1 TATATATGTATATCTA
6061981 TATA
1 TATA
6061985 CTTTCCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (16 bp):
TATATATGTATATCTA
Found at i:6062125 original size:11 final size:11
Alignment explanation
Indices: 6062109--6062151 Score: 56
Period size: 10 Copynumber: 4.2 Consensus size: 11
6062099 ACATGCACAT
6062109 TTATATATATA
1 TTATATATATA
6062120 TTATATATAT-
1 TTATATATATA
6062130 TTATATA-ATA
1 TTATATATATA
*
6062140 TT-TATATGTA
1 TTATATATATA
6062150 TT
1 TT
6062152 TGCGCATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 6 0.21
10 13 0.45
11 10 0.34
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (11 bp):
TTATATATATA
Found at i:6062131 original size:21 final size:21
Alignment explanation
Indices: 6062107--6062152 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
6062097 TCACATGCAC
6062107 ATTTATAT-ATATATTATATAT
1 ATTTATATAATAT-TTATATAT
*
6062128 ATTTATATAATATTTATATGT
1 ATTTATATAATATTTATATAT
6062149 ATTT
1 ATTT
6062153 GCGCATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTATATAATATTTATATAT
Found at i:6082392 original size:87 final size:86
Alignment explanation
Indices: 6082222--6082392 Score: 184
Period size: 87 Copynumber: 2.0 Consensus size: 86
6082212 GGATGAGCTC
* * *
6082222 CTTACTCTTAATGAGTTCATAGCCCAGAGTTTGCGTGGTCTTAGTAAGATGAACTTGATGAATTC
1 CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGGTCTTA-TAAGACGAACTTGATGAATTC
* * *
6082287 ACCAACGTGTGAAGTTGAGTTT
65 ACCAACGTATAAAATTGAGTTT
* * * * *
6082309 CTTACTCTTAATGAATTCATATCCAATAGTTTGGGTGGTTCTGT-TGAGACGGACTTGATGAATT
1 CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGG-TCT-TATAAGACGAACTTGATGAATT
*
6082373 CACCGAA-TTATAAAATTGAG
64 CACC-AACGTATAAAATTGAG
6082393 AGGTTAAGCT
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
87 63 0.91
88 5 0.07
89 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (86 bp):
CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGGTCTTATAAGACGAACTTGATGAATTCA
CCAACGTATAAAATTGAGTTT
Found at i:6091770 original size:52 final size:51
Alignment explanation
Indices: 6091699--6091907 Score: 275
Period size: 52 Copynumber: 4.1 Consensus size: 51
6091689 ATCAAGTGAT
* * *
6091699 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGT-G
* *
6091751 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
* *
6091802 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
*
6091849 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGAC-AAGTG
6091901 ATAAGTG
1 A-AAGTG
6091908 GCTACACTTA
Statistics
Matches: 141, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
46 43 0.30
51 1 0.01
52 92 0.65
53 5 0.04
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGAGACAAGTG
Found at i:6091821 original size:98 final size:97
Alignment explanation
Indices: 6091685--6091907 Score: 231
Period size: 98 Copynumber: 2.3 Consensus size: 97
6091675 TTTGAGTACT
* * *
6091685 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTAC-ACT-TATCTGATCAAGTGA-CAA
1 TCTGATCAAGTGA-CAAGTGATAAGTGATAGCTATAGCTACGACTATA-CTGATC---TGATCAA
* * *
6091747 GTG-GAAAGTGATAAGTGATAGCTTCGGCTACACTTA
61 GAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * * *
6091783 TCTGATCAAGTGACAAGTGAAAAGTGATAAG-TGATAGCTTCGGCTATACTTATCTGATCAAGAG
1 TCTGATCAAGTGACAAGTGATAAGTGAT-AGCT-ATAGCTACGACTATACTGATCTGATCAAGAG
*
6091847 ACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
64 ACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
6091881 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGAC-AAGTGATAAGTG
6091908 GCTACACTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
96 3 0.03
97 18 0.17
98 64 0.61
99 18 0.17
100 2 0.02
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (97 bp):
TCTGATCAAGTGACAAGTGATAAGTGATAGCTATAGCTACGACTATACTGATCTGATCAAGAGAC
AAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:6091880 original size:46 final size:44
Alignment explanation
Indices: 6091803--6091981 Score: 192
Period size: 37 Copynumber: 4.3 Consensus size: 44
6091793 TGACAAGTGA
*
6091803 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTT--GCTACACTTATCTGATCAAGAGAC
6091849 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGC-TT-GCTACACTTATCTGATCAAGAGAC
*
6091895 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
6091932 AAAGTGATAA--G-T-G---GCTACACTTATCTGATCAAGA-AC
1 AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
6091968 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
6091982 CATACGTAAG
Statistics
Matches: 126, Mismatches: 3, Indels: 16
0.87 0.02 0.11
Matches are distributed among these distances:
35 9 0.07
36 2 0.02
37 58 0.46
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 51 0.40
47 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (44 bp):
AAAGTGATAAGTGATAGCTTGCTACACTTATCTGATCAAGAGAC
Found at i:6091915 original size:37 final size:36
Alignment explanation
Indices: 6091871--6091979 Score: 193
Period size: 37 Copynumber: 3.0 Consensus size: 36
6091861 GATAGCTTTA
6091871 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGA-ACAAAGTGATAAGTG
6091908 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAG-AACAAAGTGATAAGTG
6091945 GCTACACTTATCTGATCAAGAAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAACAAAGTGATAAGTG
6091980 ATCATACGTA
Statistics
Matches: 71, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
35 12 0.17
36 3 0.04
37 55 0.77
38 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGAACAAAGTGATAAGTG
Found at i:6113411 original size:14 final size:14
Alignment explanation
Indices: 6113392--6113422 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6113382 AAGTCTTGGT
6113392 ATCCTGCCCAAGCC
1 ATCCTGCCCAAGCC
6113406 ATCCTGCCCAAGCC
1 ATCCTGCCCAAGCC
6113420 ATC
1 ATC
6113423 TCTAATGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.48, G:0.13, T:0.16
Consensus pattern (14 bp):
ATCCTGCCCAAGCC
Found at i:6118680 original size:26 final size:26
Alignment explanation
Indices: 6118651--6118704 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
6118641 TGGTATGAGT
6118651 ATGAATGAAATGGAAGAAATAAAAGA
1 ATGAATGAAATGGAAGAAATAAAAGA
6118677 ATGAATGAAATGGAAGAAATAAAAGA
1 ATGAATGAAATGGAAGAAATAAAAGA
6118703 AT
1 AT
6118705 ATTTTCCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (26 bp):
ATGAATGAAATGGAAGAAATAAAAGA
Found at i:6131003 original size:10 final size:10
Alignment explanation
Indices: 6130988--6131034 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
6130978 TGCGTTTGTA
6130988 TTTTCTTTAT
1 TTTTCTTTAT
6130998 TTTTCTTTTAT
1 TTTTC-TTTAT
6131009 TTTAT-TTTAT
1 TTT-TCTTTAT
* *
6131019 TTTTGTTTGT
1 TTTTCTTTAT
6131029 TTTTCT
1 TTTTCT
6131035 ACAATCTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 1 0.03
10 22 0.69
11 8 0.25
12 1 0.03
ACGTcount: A:0.09, C:0.06, G:0.04, T:0.81
Consensus pattern (10 bp):
TTTTCTTTAT
Found at i:6136065 original size:26 final size:25
Alignment explanation
Indices: 6136036--6136084 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
6136026 TGCCGATAAT
*
6136036 GAAATCTGCACTATAGCACGATGTCA
1 GAAATCTGCACTAT-GAACGATGTCA
* *
6136062 GAAATTTGCAGTATGAACGATGT
1 GAAATCTGCACTATGAACGATGT
6136085 AATTCTTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
GAAATCTGCACTATGAACGATGTCA
Found at i:6136311 original size:22 final size:22
Alignment explanation
Indices: 6136280--6136358 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 22
6136270 AATCAAAGTC
*
6136280 AAAATGAAAATGAAAATGAAAA
1 AAAATCAAAATGAAAATGAAAA
*
6136302 AAAATCAAAAATCAAAAT-AAAA
1 AAAATC-AAAATGAAAATGAAAA
* *
6136324 AAAAT-AAAAAGAAGAAAGAAGAAA
1 AAAATCAAAATGAA-AATG-A-AAA
6136348 AAAATCAAAAT
1 AAAATCAAAAT
6136359 CAAGATCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.13
21 2 0.04
22 14 0.31
23 11 0.24
24 8 0.18
25 4 0.09
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAATCAAAATGAAAATGAAAA
Found at i:6136318 original size:23 final size:21
Alignment explanation
Indices: 6136254--6136333 Score: 79
Period size: 24 Copynumber: 3.6 Consensus size: 21
6136244 AAAAGGGAAG
*
6136254 AAAAAATAAAAATCACAATCAA
1 AAAAAATAAAAATCAAAAT-AA
* * *
6136276 AGTCAAAATGAAAATGAAAATGAA
1 A--AAAAATAAAAATCAAAAT-AA
6136300 AAAAAATCAAAAATCAAAATAA
1 AAAAAAT-AAAAATCAAAATAA
6136322 AAAAAATAAAAA
1 AAAAAATAAAAA
6136334 GAAGAAAGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
21 5 0.11
22 15 0.32
23 10 0.21
24 17 0.36
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (21 bp):
AAAAAATAAAAATCAAAATAA
Found at i:6136399 original size:51 final size:47
Alignment explanation
Indices: 6136280--6136401 Score: 124
Period size: 50 Copynumber: 2.5 Consensus size: 47
6136270 AATCAAAGTC
*
6136280 AAAATGAAAATGAAAATGAAAAAAAATCAAAAATCAAAATAAAAAAAATA
1 AAAATGAAAA--AGAATG-AAAAAAATCAAAAATCAAAATAAAAAAAATA
*
6136330 AAAA-GAAGAAAGAA-GAAAAAAATC-AAAATCAAGATCAAAATGAAAATGA
1 AAAATGAA-AAAGAATGAAAAAAATCAAAAATCAAAAT-AAAA--AAAAT-A
6136379 GAAAATGAAAAAGAATGAAAAAA
1 -AAAATGAAAAAGAATGAAAAAA
6136402 GAGAAATCTA
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
45 10 0.16
46 13 0.21
47 1 0.02
48 8 0.13
49 4 0.06
50 16 0.26
51 10 0.16
ACGTcount: A:0.73, C:0.04, G:0.11, T:0.11
Consensus pattern (47 bp):
AAAATGAAAAAGAATGAAAAAAATCAAAAATCAAAATAAAAAAAATA
Found at i:6137343 original size:13 final size:13
Alignment explanation
Indices: 6137327--6137351 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6137317 GAATGAAAAC
6137327 AAATGAAAAATGA
1 AAATGAAAAATGA
6137340 AAATGAAAAATG
1 AAATGAAAAATG
6137352 GAGAGGCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAATGAAAAATGA
Found at i:6138901 original size:70 final size:70
Alignment explanation
Indices: 6138787--6138941 Score: 256
Period size: 70 Copynumber: 2.2 Consensus size: 70
6138777 GTAATTCTTG
* * * *
6138787 CTCCTTGATTTCAGCCTTAAATGTTGCATGTTGTTGGCCGAATGGGTGCTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6138852 GCAGC
66 GCAGC
* *
6138857 TTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGTTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6138922 GCAGC
66 GCAGC
6138927 CTCCTTAATTTCAGC
1 CTCCTTAATTTCAGC
6138942 ATGAATTCAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 78 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (70 bp):
CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
GCAGC
Found at i:6142207 original size:15 final size:16
Alignment explanation
Indices: 6142189--6142235 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 16
6142179 CTGAGTCAAC
*
6142189 AAAAAATG-AGAATGA
1 AAAAAATGAAAAATGA
6142204 AAAAAATGAAAAATG-
1 AAAAAATGAAAAATGA
6142219 --AAAATGAAAAATGA
1 AAAAAATGAAAAATGA
6142233 AAA
1 AAA
6142236 TGAAAAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
13 13 0.48
15 8 0.30
16 6 0.22
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (16 bp):
AAAAAATGAAAAATGA
Found at i:6142215 original size:6 final size:6
Alignment explanation
Indices: 6142206--6142241 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
6142196 GAGAATGAAA
6142206 AAAATG AAAAATG AAAATG AAAAATG AAAATG AAAA
1 AAAATG -AAAATG AAAATG -AAAATG AAAATG AAAA
6142242 ATGGAGAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:6142217 original size:7 final size:7
Alignment explanation
Indices: 6142205--6142244 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
6142195 TGAGAATGAA
6142205 AAAAATG
1 AAAAATG
6142212 AAAAATG
1 AAAAATG
6142219 -AAAATG
1 AAAAATG
6142225 AAAAATG
1 AAAAATG
6142232 -AAAATG
1 AAAAATG
6142238 AAAAATG
1 AAAAATG
6142245 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:6142222 original size:13 final size:13
Alignment explanation
Indices: 6142206--6142244 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
6142196 GAGAATGAAA
6142206 AAAATGAAAAATG
1 AAAATGAAAAATG
6142219 AAAATGAAAAATG
1 AAAATGAAAAATG
6142232 AAAATGAAAAATG
1 AAAATGAAAAATG
6142245 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:6143423 original size:11 final size:11
Alignment explanation
Indices: 6143404--6143442 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
6143394 AGAAAAGGTA
6143404 AAAAAATAAAT
1 AAAAAATAAAT
*
6143415 AATAAATAAAT
1 AAAAAATAAAT
6143426 AAAAAATATAA-
1 AAAAAATA-AAT
6143437 AAAAAA
1 AAAAAA
6143443 CTGAGACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 23 0.92
12 2 0.08
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AAAAAATAAAT
Found at i:6143799 original size:69 final size:70
Alignment explanation
Indices: 6143677--6143830 Score: 229
Period size: 69 Copynumber: 2.2 Consensus size: 70
6143667 GTAATTCTTG
* * * *
6143677 CTCCTTGATTTCAGCCTTAAATGTTGCATGTTGTTGGCCGAATGGGTGCTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6143742 GAAGC
66 GAAGC
* * *
6143747 TTCCTT-ATTTCAGCCTTAAATGATGCATGTTTTTGACCAAATGGGTGTTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
*
6143811 GCAGC
66 GAAGC
6143816 CTCCTTAATTTCAGC
1 CTCCTTAATTTCAGC
6143831 ATGAATTCAA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
69 62 0.83
70 13 0.17
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (70 bp):
CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
GAAGC
Found at i:6157863 original size:18 final size:17
Alignment explanation
Indices: 6157828--6157878 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
6157818 TTCACATACA
6157828 TATATATTTTTCTTATATG
1 TATATA-TTTT-TTATATG
*
6157847 TACTATATTTTTTATATT
1 TA-TATATTTTTTATATG
*
6157865 TATATTTTTTTTAT
1 TATATATTTTTTAT
6157879 CTATTTTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 11 0.38
18 8 0.28
19 6 0.21
20 4 0.14
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (17 bp):
TATATATTTTTTATATG
Found at i:6158044 original size:10 final size:9
Alignment explanation
Indices: 6158024--6158103 Score: 79
Period size: 10 Copynumber: 8.2 Consensus size: 9
6158014 ATTGATTTGT
6158024 TTTTTATTTA
1 TTTTTA-TTA
6158034 TTTTTCATTA
1 TTTTT-ATTA
*
6158044 TTATTATTTA
1 TTTTTA-TTA
*
6158054 TTATTATTA
1 TTTTTATTA
6158063 TTATTTATTA
1 TT-TTTATTA
6158073 TTTATTATTA
1 TTT-TTATTA
6158083 TTTATTATTA
1 TTT-TTATTA
*
6158093 TTATTATTA
1 TTTTTATTA
6158102 TT
1 TT
6158104 ATTGTTCTTG
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
9 15 0.24
10 47 0.75
11 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTATTA
Found at i:6158048 original size:3 final size:3
Alignment explanation
Indices: 6158040--6158106 Score: 98
Period size: 3 Copynumber: 21.0 Consensus size: 3
6158030 TTTATTTTTC
6158040 ATT ATT ATT ATTT ATT ATT ATT ATT ATTT ATT ATTT ATT ATT ATTT ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT A-TT ATT A-TT ATT ATT A-TT ATT
6158089 ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT
6158107 GTTCTTGATC
Statistics
Matches: 60, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
3 48 0.80
4 12 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:6158056 original size:13 final size:13
Alignment explanation
Indices: 6158031--6158106 Score: 92
Period size: 13 Copynumber: 6.2 Consensus size: 13
6158021 TGTTTTTTAT
6158031 TTATT-TTTCATTA
1 TTATTATTT-ATTA
6158044 TTATTATTTATTA
1 TTATTATTTATTA
6158057 TTATTA-TTA-T-
1 TTATTATTTATTA
6158067 TTATTATTTATTA
1 TTATTATTTATTA
6158080 TTATT-TATTATTA
1 TTATTAT-TTATTA
6158093 TTATTA-TTATTA
1 TTATTATTTATTA
6158105 TT
1 TT
6158107 GTTCTTGATC
Statistics
Matches: 57, Mismatches: 0, Indels: 13
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.11
11 4 0.07
12 13 0.23
13 31 0.54
14 3 0.05
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (13 bp):
TTATTATTTATTA
Found at i:6158070 original size:36 final size:36
Alignment explanation
Indices: 6158027--6158103 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 36
6158017 GATTTGTTTT
6158027 TTATTTATT-TTTCATTATTA-TTATTTATTATTATTA
1 TTATTTATTATTT-ATTATTATTTA-TTATTATTATTA
6158063 TTATTTATTATTTATTATTATTTATTATTATTATTA
1 TTATTTATTATTTATTATTATTTATTATTATTATTA
6158099 TTATT
1 TTATT
6158104 ATTGTTCTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
36 33 0.85
37 6 0.15
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (36 bp):
TTATTTATTATTTATTATTATTTATTATTATTATTA
Found at i:6167744 original size:17 final size:17
Alignment explanation
Indices: 6167718--6167750 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6167708 CTTTGCTTGA
*
6167718 AAACCTAAAGAAGAATC
1 AAACCAAAAGAAGAATC
6167735 AAACCAAAAGAAGAAT
1 AAACCAAAAGAAGAAT
6167751 ATACAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.15, G:0.12, T:0.09
Consensus pattern (17 bp):
AAACCAAAAGAAGAATC
Found at i:6172632 original size:31 final size:31
Alignment explanation
Indices: 6172597--6172655 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
6172587 ATAATTTTTG
*
6172597 ATATTTTTCAAAAAATTGTATAATATTTTCT
1 ATATTTTTCAAAAAATTGTATAACATTTTCT
* *
6172628 ATATTTTTCTAAAAATTTTATAACATTT
1 ATATTTTTCAAAAAATTGTATAACATTT
6172656 AAAAATTTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (31 bp):
ATATTTTTCAAAAAATTGTATAACATTTTCT
Found at i:6172698 original size:10 final size:10
Alignment explanation
Indices: 6172659--6172725 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 10
6172649 AACATTTAAA
*
6172659 AATTTTCTAT
1 AATTTTTTAT
6172669 -ATTTTTTAT
1 AATTTTTTAT
**
6172678 -ATTTTAAAT
1 AATTTTTTAT
6172687 AATTTTTTAT
1 AATTTTTTAT
* *
6172697 AAATTTCTAAT
1 -AATTTTTTAT
6172708 AATTTTTTAT
1 AATTTTTTAT
6172718 GAATTTTT
1 -AATTTTT
6172726 AATTTATATG
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
9 15 0.33
10 15 0.33
11 15 0.33
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (10 bp):
AATTTTTTAT
Found at i:6172728 original size:21 final size:20
Alignment explanation
Indices: 6172669--6172728 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
6172659 AATTTTCTAT
*
6172669 ATTTTTTAT-ATTTTAAATA
1 ATTTTTTATAATTTTTAATA
*
6172688 ATTTTTTATAAATTTCTAATA
1 ATTTTTTAT-AATTTTTAATA
6172709 ATTTTTTATGAATTTTTAAT
1 ATTTTTTAT-AATTTTTAAT
6172729 TTATATGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.26
21 26 0.74
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTTTATAATTTTTAATA
Found at i:6177573 original size:134 final size:132
Alignment explanation
Indices: 6177333--6177601 Score: 457
Period size: 134 Copynumber: 2.0 Consensus size: 132
6177323 GGGTTTTCCC
* *
6177333 TGTTTGCGAACATGTTTTTCATTTTAGTTGCATAGATAACTGGTTGAGAAAACATTTAACTTGTC
1 TGTTTCCGAACATGTTTTTCATTTTAGTTGCATAGATAACTGGTTGAGAAAACATGTAACTTGTC
*
6177398 CGATTTGTCGGAATTGTATAATAGATAGTATGAGCATGACATTGAGAATGTAAGTATATATATAC
66 CGAGTTGTCGGAATTGTATAATAGATAGTATGAGCATGACATTGAGAATGT-A-TATATATATAC
6177463 TTTT
129 TTTT
* *
6177467 TGTTTCCGAACATGTTTTTCATTTTAGTTGCATAGATAACTGGTTGAGAAATCATGTAACTTGTT
1 TGTTTCCGAACATGTTTTTCATTTTAGTTGCATAGATAACTGGTTGAGAAAACATGTAACTTGTC
* *
6177532 CGAGTTGTCGGAATTGTATAGTAGATAGTATGAGCATGACATTGAGAATGTATATATATATATTT
66 CGAGTTGTCGGAATTGTATAATAGATAGTATGAGCATGACATTGAGAATGTATATATATATACTT
6177597 TT
131 TT
6177599 TGT
1 TGT
6177602 ATATATATAT
Statistics
Matches: 128, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
132 17 0.13
133 1 0.01
134 110 0.86
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (132 bp):
TGTTTCCGAACATGTTTTTCATTTTAGTTGCATAGATAACTGGTTGAGAAAACATGTAACTTGTC
CGAGTTGTCGGAATTGTATAATAGATAGTATGAGCATGACATTGAGAATGTATATATATATACTT
TT
Found at i:6177883 original size:5 final size:5
Alignment explanation
Indices: 6177873--6177897 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
6177863 TTTATGAGTT
6177873 TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA
6177898 GTGAACGGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:6182059 original size:75 final size:75
Alignment explanation
Indices: 6181911--6182065 Score: 172
Period size: 75 Copynumber: 2.1 Consensus size: 75
6181901 GCACTAAACG
* * *
6181911 CAAACACTGTTGGTTCATCCAACTAGAGTTGGGCTCACATTTAATATCATCGGTATATCCGACTA
1 CAAACACTGTTGGTTCATCCAACTAGAGTTGGGATCACATTCAATATCATCGGTATACCCGACTA
** *
6181976 GTGTTGGGCA
66 ACGCTGGGCA
* * *
6181986 CAAACATTGTTGGTTTATCCAA-TGAGAGTTGGGATCACATTCAATA-CTGTCGGT-TAACCCGA
1 CAAACACTGTTGGTTCATCCAACT-AGAGTTGGGATCACATTCAATATC-ATCGGTAT-ACCCGA
*
6182048 CTAACGCTGGGCG
63 CTAACGCTGGGCA
6182061 CAAAC
1 CAAAC
6182066 TCCTCTATAG
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
74 3 0.04
75 64 0.96
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (75 bp):
CAAACACTGTTGGTTCATCCAACTAGAGTTGGGATCACATTCAATATCATCGGTATACCCGACTA
ACGCTGGGCA
Found at i:6183444 original size:48 final size:46
Alignment explanation
Indices: 6183353--6183445 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 46
6183343 ATAGGTGACC
* * * *
6183353 AGGCACTATTATTCAATTCGTGTAGGTTTAACCCGGAAGGGTAACT
1 AGGCACTATAATTCAATTCGTGTACGTTTAACCCGAAAAGGTAACT
6183399 AGGCACTATAATTCATTATTCGTGTACGTTTAACCC-AAACAGGTAAC
1 AGGCACTATAATTCA--ATTCGTGTACGTTTAACCCGAAA-AGGTAAC
6183446 CAAACACTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
46 14 0.35
47 2 0.05
48 24 0.60
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (46 bp):
AGGCACTATAATTCAATTCGTGTACGTTTAACCCGAAAAGGTAACT
Found at i:6189209 original size:100 final size:100
Alignment explanation
Indices: 6189033--6189218 Score: 245
Period size: 100 Copynumber: 1.9 Consensus size: 100
6189023 GAACATGTTG
* * *
6189033 GGCTGAGTAACCGGAGTGGGGTGCTTGGCTGTCATCTCTCTTCGAGTCAAAAGGTTCGATGTGTT
1 GGCTGAGTAACCGGAGTGGGATGCTTGGCTGTCATCTCTCTTCGAGTCAAAAGGTTCGATATATT
* *
6189098 CTTAAGAAAAAATTATAATAAATTAGGAGTCTGCT
66 CCTAAGAAAAAATAATAATAAATTAGGAGTCTGCT
*
6189133 GGCTGAGTAACCAGG-GTGGGATGC-TGGCTGTCATCTCTCTTTGCA-TCAAAAGGGTTC-AGTA
1 GGCTGAGTAACC-GGAGTGGGATGCTTGGCTGTCATCTCTCTTCG-AGTCAAAA-GGTTCGA-TA
*
6189194 TATTCCTAAGCAAAAATAATAATAA
62 TATTCCTAAGAAAAAATAATAATAA
6189219 TAATAATAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
99 25 0.33
100 48 0.64
101 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (100 bp):
GGCTGAGTAACCGGAGTGGGATGCTTGGCTGTCATCTCTCTTCGAGTCAAAAGGTTCGATATATT
CCTAAGAAAAAATAATAATAAATTAGGAGTCTGCT
Found at i:6189216 original size:3 final size:3
Alignment explanation
Indices: 6189208--6189240 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
6189198 CCTAAGCAAA
6189208 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6189241 TTAGGGACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6208816 original size:13 final size:13
Alignment explanation
Indices: 6208771--6208815 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
6208761 AAAGCAAGGC
*
6208771 AATAACAATAAAT
1 AATAAAAATAAAT
6208784 AGAT--AAATAAAT
1 A-ATAAAAATAAAT
6208796 AATAAAAATAAA-
1 AATAAAAATAAAT
6208808 AATAAAAA
1 AATAAAAA
6208816 AATCCAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 2 0.07
12 16 0.57
13 8 0.29
14 2 0.07
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (13 bp):
AATAAAAATAAAT
Found at i:6220187 original size:43 final size:43
Alignment explanation
Indices: 6220140--6220410 Score: 257
Period size: 43 Copynumber: 6.3 Consensus size: 43
6220130 GTGCCGGACA
* *
6220140 AAACGCCGCTAAAGACTAAGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCTAC
*
6220183 AAACGCCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCTAC
* * *
6220226 AAACGCCGCTAAAGACTAGGACCTTTAGC-AGCGATTTTTCC-AC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGA-CG-CTTTTCCTAC
** * * *
6220269 AAGTGTCGCTAAAGACCAAAACCTTTAGCGGCGCTTTTTCC-AC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGACGC-TTTTCCTAC
* *
6220312 AAACGCCGCTAAAGACCCAA-ACCTATAGCGACGCTTTT-TTCAC
1 AAACGCCGCTAAAGA-CCAAGACCTTTAGCGACGCTTTTCCT-AC
* * * * * ***
6220355 AAACACCGCTATAG-CTCAAGACTTTTAGTGACACTTTGATTAC
1 AAACGCCGCTAAAGAC-CAAGACCTTTAGCGACGCTTTTCCTAC
6220398 AAACGCCGCTAAA
1 AAACGCCGCTAAA
6220411 AATACTATTA
Statistics
Matches: 189, Mismatches: 29, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 8 0.04
43 168 0.89
44 12 0.06
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGACGCTTTTCCTAC
Found at i:6220382 original size:129 final size:129
Alignment explanation
Indices: 6220146--6220382 Score: 345
Period size: 129 Copynumber: 1.8 Consensus size: 129
6220136 GACAAAACGC
* * *
6220146 CGCTAAAGACTAAGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAAGACCTTTAG
1 CGCTAAAGACCAAAACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAAGACCTATAG
* *
6220211 CGACGCTTTTCCCACAAACGCCGCTAAAGACTAGGACCTTTAGCAGCGATTTTTCCACAAGTGT
66 CGACGCTTTTCCCACAAACACCGCTAAAGACTAAGACCTTTAGCAGCGATTTTTCCACAAGTGT
6220275 CGCTAAAGACCAAAACCTTTAGCGGCGCTTTTTCC-ACAAACGCCGCTAAAGACCCAA-ACCTAT
1 CGCTAAAGACCAAAACCTTTAGCGGCGC-TTTTCCTACAAACGCCGCTAAAGA-CCAAGACCTAT
** * *
6220338 AGCGACGCTTTTTTCACAAACACCGCTATAG-CTCAAGACTTTTAG
64 AGCGACGCTTTTCCCACAAACACCGCTAAAGACT-AAGACCTTTAG
6220383 TGACACTTTG
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
128 2 0.02
129 84 0.88
130 10 0.10
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (129 bp):
CGCTAAAGACCAAAACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAAGACCTATAG
CGACGCTTTTCCCACAAACACCGCTAAAGACTAAGACCTTTAGCAGCGATTTTTCCACAAGTGT
Found at i:6225636 original size:8 final size:7
Alignment explanation
Indices: 6225618--6225705 Score: 52
Period size: 7 Copynumber: 12.3 Consensus size: 7
6225608 TAATGTTAAT
6225618 CTAAACC
1 CTAAACC
6225625 CTAAACCC
1 CTAAA-CC
*
6225633 CTAATCC
1 CTAAACC
*
6225640 CT-ATCTC
1 CTAAAC-C
6225647 CTAAACC
1 CTAAACC
* *
6225654 TTAAATC
1 CTAAACC
* *
6225661 ATAAAAC
1 CTAAACC
*
6225668 ATAAACC
1 CTAAACC
6225675 CTAAACCC
1 CTAAA-CC
*
6225683 CTAACCC
1 CTAAACC
*
6225690 CTAACCC
1 CTAAACC
*
6225697 CTAACCC
1 CTAAACC
6225704 CT
1 CT
6225706 CTTTTACAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
6 3 0.04
7 51 0.75
8 14 0.21
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:6225704 original size:14 final size:15
Alignment explanation
Indices: 6225673--6225705 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
6225663 AAAACATAAA
6225673 CCCTAAACCCCTAAC
1 CCCTAAACCCCTAAC
6225688 CCCT-AACCCCTAAC
1 CCCTAAACCCCTAAC
6225702 CCCT
1 CCCT
6225706 CTTTTACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.27, C:0.58, G:0.00, T:0.15
Consensus pattern (15 bp):
CCCTAAACCCCTAAC
Found at i:6225844 original size:16 final size:16
Alignment explanation
Indices: 6225823--6225891 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
6225813 TTTGGTTCGC
6225823 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6225839 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6225855 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
6225872 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6225888 TGTA
1 TGTA
6225892 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:6225869 original size:33 final size:32
Alignment explanation
Indices: 6225823--6225891 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
6225813 TTTGGTTCGC
6225823 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
6225855 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
6225888 TGTA
1 TGTA
6225892 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:6225956 original size:44 final size:45
Alignment explanation
Indices: 6225872--6225962 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
6225862 GGATTAGAGG
* * *
6225872 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
6225917 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
6225961 TG
1 TG
6225963 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:6226148 original size:18 final size:19
Alignment explanation
Indices: 6226127--6226163 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
6226117 TTATTATTAA
6226127 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
6226145 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
6226164 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:6226271 original size:59 final size:58
Alignment explanation
Indices: 6226205--6226390 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
6226195 CTCAAATCAT
* *
6226205 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
6226264 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
6226324 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
6226384 AATATAT
1 AATATAT
6226391 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:6226328 original size:120 final size:120
Alignment explanation
Indices: 6226107--6226396 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
6226097 TTAATCATAT
6226107 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
6226172 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
6226229 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
6226293 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
6226349 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
6226397 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:6229634 original size:14 final size:14
Alignment explanation
Indices: 6229617--6229661 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
6229607 CACTAACTCT
*
6229617 TAACCTTTAACCCC
1 TAACCTCTAACCCC
6229631 TAACCTCTAACCCC
1 TAACCTCTAACCCC
6229645 TAA-CTACTAACCCC
1 TAACCT-CTAACCCC
6229659 TAA
1 TAA
6229662 ACCTTATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 2 0.07
14 27 0.93
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.24
Consensus pattern (14 bp):
TAACCTCTAACCCC
Found at i:6229712 original size:7 final size:7
Alignment explanation
Indices: 6229700--6229747 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
6229690 ATTACTTAAT
6229700 CTAAACC
1 CTAAACC
6229707 CTAAACC
1 CTAAACC
6229714 CT-AACC
1 CTAAACC
6229720 C-AAATCC
1 CTAAA-CC
*
6229727 CTAACCC
1 CTAAACC
*
6229734 CTAACCC
1 CTAAACC
6229741 CTAAACC
1 CTAAACC
6229748 TTATTTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 7 0.19
7 27 0.75
8 2 0.06
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:6229728 original size:13 final size:13
Alignment explanation
Indices: 6229703--6229744 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
6229693 ACTTAATCTA
6229703 AACCCTAAACCCT
1 AACCCTAAACCCT
6229716 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
6229729 AACCCCTAACCCCT
1 AA-CCCTAAACCCT
6229743 AA
1 AA
6229745 ACCTTATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 11 0.44
14 9 0.36
15 2 0.08
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:6229796 original size:81 final size:84
Alignment explanation
Indices: 6229618--6229801 Score: 257
Period size: 81 Copynumber: 2.2 Consensus size: 84
6229608 ACTAACTCTT
* * *
6229618 AACCTTTAACCCCTAACCTCTAACCCCTAACTACTAACCCCTAAACCTTATTTAATATATAAATT
1 AACC-TTAAACCCTAACCTCAAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATT
* *
6229683 AAAAAACATTACTTAATCTA
65 AAAAAACACTAATTAATCTA
* * *
6229703 AACCCTAAACCCTAACC-CAAATCCCTAACCCCTAACCCCTAAACCTTATTT-A-ATATAAATTA
1 AACCTTAAACCCTAACCTCAAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTA
*
6229765 AAACACACTAATTAATCTA
66 AAAAACACTAATTAATCTA
6229784 AACCTTAAACCCTAACCT
1 AACCTTAAACCCTAACCT
6229802 AACATCGAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
81 42 0.48
82 1 0.01
83 30 0.34
84 11 0.12
85 4 0.05
ACGTcount: A:0.42, C:0.31, G:0.00, T:0.27
Consensus pattern (84 bp):
AACCTTAAACCCTAACCTCAAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTA
AAAAACACTAATTAATCTA
Found at i:6229855 original size:7 final size:7
Alignment explanation
Indices: 6229843--6229874 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
6229833 CTTTTAATCT
6229843 CTAACCC
1 CTAACCC
*
6229850 CTAACCA
1 CTAACCC
6229857 CTAACCC
1 CTAACCC
6229864 CTAACCC
1 CTAACCC
6229871 CTAA
1 CTAA
6229875 ATCACAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.34, C:0.50, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAACCC
Found at i:6230299 original size:41 final size:42
Alignment explanation
Indices: 6230254--6230363 Score: 143
Period size: 41 Copynumber: 2.7 Consensus size: 42
6230244 AAATATTTTT
* * *
6230254 GCGGCACTTTTTTAAAAACGCCGCTAAAAG-CCTAAGCATTA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAAGACCTAAGCATCA
* * *
6230295 GCGGCGCTTTTTCAAAAACGCCGCT-AAAGATCTGAGCATCA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAAGACCTAAGCATCA
*
6230336 GCGACGCTTTTTAAAAAACGCCGCTAAA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAA
6230364 GCCCCGAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
40 4 0.07
41 54 0.90
42 2 0.03
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
GCGGCGCTTTTTAAAAAACGCCGCTAAAAGACCTAAGCATCA
Found at i:6230497 original size:40 final size:39
Alignment explanation
Indices: 6230419--6230524 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 39
6230409 CGGCATTTTT
* *
6230419 CTAATGCTC-ATTTTTAGTGGCGCTTTTCTGAAAGCGCCG
1 CTAATGCTCGATTTTTAGCGGCG-TTTTATGAAAGCGCCG
* *
6230458 CTAATGCTCGATCTTTAACGGCGTTTTATGTAAAGCGCCG
1 CTAATGCTCGATTTTTAGCGGCGTTTTATG-AAAGCGCCG
6230498 CTAATGCTCGATTTTTAGCGGCGTTTT
1 CTAATGCTCGATTTTTAGCGGCGTTTT
6230525 TTGTCCAAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 15 0.25
40 44 0.75
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (39 bp):
CTAATGCTCGATTTTTAGCGGCGTTTTATGAAAGCGCCG
Found at i:6239361 original size:16 final size:16
Alignment explanation
Indices: 6239339--6239407 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
6239329 TTTGGTTCGC
6239339 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
6239355 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6239371 TGTATTGTGATTAGAGG
1 TGTATTG-GATTAGAGG
6239388 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
6239404 TGTA
1 TGTA
6239408 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:6239385 original size:33 final size:32
Alignment explanation
Indices: 6239339--6239407 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
6239329 TTTGGTTCGC
6239339 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
6239371 TGTATTGTGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTG-GATTAGAGGCGTATTGGATTAGAGG
6239404 TGTA
1 TGTA
6239408 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 7 0.20
33 28 0.80
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:6239472 original size:44 final size:45
Alignment explanation
Indices: 6239388--6239478 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
6239378 TGATTAGAGG
* * *
6239388 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
6239433 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
6239477 TG
1 TG
6239479 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:6239664 original size:18 final size:17
Alignment explanation
Indices: 6239643--6239677 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6239633 TTATTATTAA
*
6239643 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6239661 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6239678 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6239837 original size:154 final size:156
Alignment explanation
Indices: 6239530--6239843 Score: 551
Period size: 157 Copynumber: 2.0 Consensus size: 156
6239520 TAGAATACCC
*
6239530 TTAGCATAAATTTGTTTTAGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTAGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * *
6239595 TTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAA-TATTATTAAATATATTATAATTAAAA
6239660 TATATAATTTAATAAAATTCTTAATAA
130 TATATAATTTAATAAAATTCTTAATAA
* *
6239687 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTAGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
6239752 ATATCAATAATAAATAATTTAATCATATTTAAACAT-A-ATTATTAAATATATTATAATTAAAAT
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATATTATTAAATATATTATAATTAAAAT
6239815 ATATAATTTAATAAAATTCTTAATAA
131 ATATAATTTAATAAAATTCTTAATAA
6239841 TTA
1 TTA
6239844 ATATTCTTAT
Statistics
Matches: 151, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
154 54 0.36
156 1 0.01
157 96 0.64
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAATTTGTTTTAGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATATTATTAAATATATTATAATTAAAAT
ATATAATTTAATAAAATTCTTAATAA
Found at i:6239920 original size:107 final size:108
Alignment explanation
Indices: 6239789--6239990 Score: 379
Period size: 107 Copynumber: 1.9 Consensus size: 108
6239779 TTTAAACATA
*
6239789 ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTAT
1 ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTAT
*
6239854 ATGAATTTACTCAAATCATAATATA-GATAATTTAACATAATT
66 ATGAATTTACTAAAATCATAATATATGATAATTTAACATAATT
6239896 ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTAT
1 ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTAT
6239961 ATGAATTTACTAAAATCATAATATATGATA
66 ATGAATTTACTAAAATCATAATATATGATA
6239991 CTATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 88 0.96
108 4 0.04
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (108 bp):
ATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCTTAT
ATGAATTTACTAAAATCATAATATATGATAATTTAACATAATT
Found at i:6239923 original size:16 final size:16
Alignment explanation
Indices: 6239880--6239925 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
6239870 CATAATATAG
*
6239880 ATAATTTAACATA-ATT
1 ATAA-TTAAAATATATT
*
6239896 ATTATT-AAATATATT
1 ATAATTAAAATATATT
6239911 ATAATTAAAATATAT
1 ATAATTAAAATATAT
6239926 AATTTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTAAAATATATT
Found at i:6239932 original size:14 final size:15
Alignment explanation
Indices: 6239880--6239934 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
6239870 CATAATATAG
6239880 ATAATTTAACATA-ATT
1 ATAA-TTAA-ATATATT
*
6239896 ATTATTAAATATATT
1 ATAATTAAATATATT
6239911 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
6239924 ATAATTTAATA
1 ATAATTAAATA
6239935 AAATTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 9 0.26
14 7 0.21
15 15 0.44
16 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:6239983 original size:37 final size:35
Alignment explanation
Indices: 6239814--6239983 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
6239804 ATAATTAAAA
*
6239814 TATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 TATATAATTTAATAAAA-TCATAATAATTAATATT-T
* *
6239851 TATATGAATTTACTCAAATCATAAT-A-TAGATAATTT
1 TATAT-AATTTAATAAAATCATAATAATTA-AT-ATTT
* * * * *
6239887 AACATAATTATTATTAAATAT-ATTATAATTAA-A--A
1 TATATAA-T-TTAATAAA-ATCATAATAATTAATATTT
* *
6239921 TATATAATTTAATAAAATTCTTAATAATCAATATTCT
1 TATATAATTTAATAAAA-TCATAATAATTAATATT-T
*
6239958 TATATGAATTTACTAAAATCATAATA
1 TATAT-AATTTAATAAAATCATAATA
6239984 TATGATACTA
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 1 0.01
32 8 0.08
33 9 0.09
34 6 0.06
35 4 0.04
36 9 0.09
37 36 0.36
38 25 0.25
39 2 0.02
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (35 bp):
TATATAATTTAATAAAATCATAATAATTAATATTT
Found at i:6240391 original size:18 final size:18
Alignment explanation
Indices: 6240368--6240402 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
6240358 ATAATATAAT
6240368 TTAAAATATTAAATATAC
1 TTAAAATATTAAATATAC
6240386 TTAAAATATTAAATATA
1 TTAAAATATTAAATATA
6240403 AAATCATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAATATTAAATATAC
Found at i:6240427 original size:10 final size:10
Alignment explanation
Indices: 6240412--6240454 Score: 65
Period size: 10 Copynumber: 4.6 Consensus size: 10
6240402 AAAATCATAA
6240412 TATATAATAC
1 TATATAATAC
6240422 TATATAATA-
1 TATATAATAC
6240431 T-T-TAATAC
1 TATATAATAC
6240439 TATATAATAC
1 TATATAATAC
6240449 TATATA
1 TATATA
6240455 TTAAATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
7 5 0.17
8 2 0.07
9 2 0.07
10 21 0.70
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (10 bp):
TATATAATAC
Found at i:6240430 original size:17 final size:17
Alignment explanation
Indices: 6240408--6240452 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
6240398 ATATAAAATC
6240408 ATAATATATAATACTAT
1 ATAATATATAATACTAT
*
6240425 ATAATATTTAATACTAT
1 ATAATATATAATACTAT
6240442 ATAATACTATA
1 ATAATA-TATA
6240453 TATTAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATATATAATACTAT
Found at i:6240539 original size:192 final size:187
Alignment explanation
Indices: 6240214--6240567 Score: 530
Period size: 192 Copynumber: 1.9 Consensus size: 187
6240204 ATGAATTTTC
*
6240214 TAAAATCATAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAATTTAAT
1 TAAAATCATAATATATAATACTATAAAATATAATCTAACATAATTATTATTAAATATAATTTAAT
*
6240279 AAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAATAAAATCATA
66 AAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAATAAAATCATA
*
6240344 ATATATAATACTATATAATATAATTTAAAATATTAAATATACTTAAAATATTAAATA
131 ATATATAATACTATAAAATATAATTTAAAATATTAAATATACTTAAAATATTAAATA
* * *
6240401 TAAAATCATAATATATAATACTATATAATATTTAATACT-ATATAATACTATATATTAAATATAT
1 TAAAATCATAATATATAATACTATA-AA-ATATAAT-CTAACATAAT--TAT-TATTAAATATAA
* * * *
6240465 TTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAA
60 TTTAATAAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAATAAA
* * *
6240530 ATTATAATATATGATACTATAAAATATAATTTGAAATA
125 ATCATAATATATAATACTATAAAATATAATTTAAAATA
6240568 ATTATTATTA
Statistics
Matches: 148, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
187 25 0.17
188 2 0.01
189 12 0.08
190 1 0.01
191 3 0.02
192 105 0.71
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (187 bp):
TAAAATCATAATATATAATACTATAAAATATAATCTAACATAATTATTATTAAATATAATTTAAT
AAAAATATATAATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAATAAAATCATA
ATATATAATACTATAAAATATAATTTAAAATATTAAATATACTTAAAATATTAAATA
Found at i:6240544 original size:61 final size:60
Alignment explanation
Indices: 6240468--6240781 Score: 245
Period size: 61 Copynumber: 5.2 Consensus size: 60
6240458 AATATATTTT
* *
6240468 AATTAAAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAA
1 AATTATAATATATGATTTAATAAAATTCTTAAT-ATAAATATTCTTATATGAATTTACTAA
* * * * * * * **
6240529 AATTATAATATATGATACT-ATAAAA-T-ATAATTTGAAATAATTATTAT-TAAATATATTTT
1 AATTATAATATATGAT-TTAATAAAATTCTTAATAT-AAAT-ATTCTTATATGAATTTACTAA
* *
6240588 AATTAAAATATATGATTTAATAAAATTCTTAATATTAAGTATTCTTATATGAATTTACTAA
1 AATTATAATATATGATTTAATAAAATTCTTAATA-TAAATATTCTTATATGAATTTACTAA
* * * * * * * *
6240649 AATTATAATATATAATCGTATAA-AATATATT-TTAACATAATTACTATTAAATACAATTTAATA
1 AATTATAATATATGAT--T-TAATAA-A-ATTCTTAATATAAATATTCTTATAT-GAATTTACTA
6240712 A
60 A
6240713 AA--AT-ATATA--ATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAA
1 AATTATAATATATGATTTAATAAAATTCTTAATA-TAAATATTCTTATATGAATTTACTAA
*
6240769 AATCATAATATAT
1 AATTATAATATAT
6240782 AATACTATAA
Statistics
Matches: 194, Mismatches: 38, Indels: 43
0.71 0.14 0.16
Matches are distributed among these distances:
55 3 0.02
56 20 0.10
57 14 0.07
58 4 0.02
59 42 0.22
60 16 0.08
61 54 0.28
62 4 0.02
63 14 0.07
64 20 0.10
65 3 0.02
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (60 bp):
AATTATAATATATGATTTAATAAAATTCTTAATATAAATATTCTTATATGAATTTACTAA
Found at i:6240600 original size:18 final size:17
Alignment explanation
Indices: 6240577--6240613 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
6240567 AATTATTATT
6240577 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
6240593 AAATATATGATTTAATA
1 AAATATATGATTTAATA
6240610 AAAT
1 AAAT
6240614 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:6240600 original size:120 final size:120
Alignment explanation
Indices: 6240401--6240827 Score: 599
Period size: 120 Copynumber: 3.5 Consensus size: 120
6240391 ATATTAAATA
* * * *
6240401 TAAAATCATAATATATAATACTATATAATATTTAATACTATATAAT-ACTATATATTAAATATAT
1 TAAAATTATAATATATAATACTATA-AA-ATATAAT--T-TAAAATAATTAT-TATTAAATATAT
*
6240465 TTTAATTAAAATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTAC
60 TTTAATTAAAATATATGATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAC
* *
6240526 TAAAATTATAATATATGATACTATAAAATATAATTTGAAATAATTATTATTAAATATATTTTAAT
1 TAAAATTATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAAT
* *
6240591 TAAAATATATGATTTAATAAAATTCTTAATATTAAGTATTCTTATATGAATTTAC
66 TAAAATATATGATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAC
* * * * *
6240646 TAAAATTATAATATATAAT-CGTATAAAATATATTTTAACATAATTACTATTAAATACAATTTAA
1 TAAAATTATAATATATAATAC-TATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAA
* * *
6240710 TAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTAC
65 TTAAAATATATGATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAC
*
6240766 TAAAATCATAATATATAATACTAT-AAATATAATTTAAAATAATTATTATTAAATATAATTTT
1 TAAAATTATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATAT-ATTTT
6240828 TCTAAATATA
Statistics
Matches: 273, Mismatches: 25, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
119 29 0.11
120 207 0.76
121 6 0.02
123 6 0.02
124 2 0.01
125 23 0.08
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TAAAATTATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATATTTTAAT
TAAAATATATGATTTAATAAAATTCTTAATAATAAATATTCTTATATGAATTTAC
Found at i:6240806 original size:21 final size:21
Alignment explanation
Indices: 6240763--6240806 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6240753 TATATGAATT
*
6240763 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATAAAA
*
6240784 TACTATAAAT-ATAATTTAAAA
1 TACTA-AAATCATAATATAAAA
6240805 TA
1 TA
6240807 ATTATTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (21 bp):
TACTAAAATCATAATATAAAA
Found at i:6248131 original size:12 final size:12
Alignment explanation
Indices: 6248114--6248139 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
6248104 TCTTCTCCCA
6248114 TTAACCCTTTCT
1 TTAACCCTTTCT
6248126 TTAACCCTTTCT
1 TTAACCCTTTCT
6248138 TT
1 TT
6248140 CTTCCTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (12 bp):
TTAACCCTTTCT
Found at i:6257162 original size:14 final size:14
Alignment explanation
Indices: 6257143--6257173 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
6257133 AAGTCTTGGT
6257143 ATCCTGCCCAAGCC
1 ATCCTGCCCAAGCC
6257157 ATCCTGCCCAAGCC
1 ATCCTGCCCAAGCC
6257171 ATC
1 ATC
6257174 TCTAATGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.48, G:0.13, T:0.16
Consensus pattern (14 bp):
ATCCTGCCCAAGCC
Found at i:6268889 original size:12 final size:13
Alignment explanation
Indices: 6268868--6268896 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
6268858 AAAGTGAGGA
6268868 AGAAATGAGAGAG
1 AGAAATGAGAGAG
6268881 AGAAA-GAGAGAG
1 AGAAATGAGAGAG
6268893 AGAA
1 AGAA
6268897 GTCAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.03
Consensus pattern (13 bp):
AGAAATGAGAGAG
Found at i:6273599 original size:26 final size:25
Alignment explanation
Indices: 6273570--6273618 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
6273560 TGCCGATAAT
*
6273570 GAAATCTGCACTATAGCACGATGTCA
1 GAAATCTGCACTAT-GAACGATGTCA
* *
6273596 GAAATTTGCAGTATGAACGATGT
1 GAAATCTGCACTATGAACGATGT
6273619 AATTCTTTAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
GAAATCTGCACTATGAACGATGTCA
Found at i:6273845 original size:22 final size:22
Alignment explanation
Indices: 6273814--6273892 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 22
6273804 AATCAAAGTC
*
6273814 AAAATGAAAATGAAAATGAAAA
1 AAAATCAAAATGAAAATGAAAA
*
6273836 AAAATCAAAAATCAAAAT-AAAA
1 AAAATC-AAAATGAAAATGAAAA
* *
6273858 AAAAT-AAAAAGAAGAAAGAAGAAA
1 AAAATCAAAATGAA-AATG-A-AAA
6273882 AAAATCAAAAT
1 AAAATCAAAAT
6273893 CAAGATCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.13
21 2 0.04
22 14 0.31
23 11 0.24
24 8 0.18
25 4 0.09
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAATCAAAATGAAAATGAAAA
Found at i:6273852 original size:23 final size:21
Alignment explanation
Indices: 6273788--6273867 Score: 79
Period size: 24 Copynumber: 3.6 Consensus size: 21
6273778 AAAAGGGAAG
*
6273788 AAAAAATAAAAATCACAATCAA
1 AAAAAATAAAAATCAAAAT-AA
* * *
6273810 AGTCAAAATGAAAATGAAAATGAA
1 A--AAAAATAAAAATCAAAAT-AA
6273834 AAAAAATCAAAAATCAAAATAA
1 AAAAAAT-AAAAATCAAAATAA
6273856 AAAAAATAAAAA
1 AAAAAATAAAAA
6273868 GAAGAAAGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
21 5 0.11
22 15 0.32
23 10 0.21
24 17 0.36
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (21 bp):
AAAAAATAAAAATCAAAATAA
Found at i:6273933 original size:51 final size:47
Alignment explanation
Indices: 6273814--6273935 Score: 124
Period size: 50 Copynumber: 2.5 Consensus size: 47
6273804 AATCAAAGTC
*
6273814 AAAATGAAAATGAAAATGAAAAAAAATCAAAAATCAAAATAAAAAAAATA
1 AAAATGAAAA--AGAATG-AAAAAAATCAAAAATCAAAATAAAAAAAATA
*
6273864 AAAA-GAAGAAAGAA-GAAAAAAATC-AAAATCAAGATCAAAATGAAAATGA
1 AAAATGAA-AAAGAATGAAAAAAATCAAAAATCAAAAT-AAAA--AAAAT-A
6273913 GAAAATGAAAAAGAATGAAAAAA
1 -AAAATGAAAAAGAATGAAAAAA
6273936 GAGAAATCTA
Statistics
Matches: 62, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
45 10 0.16
46 13 0.21
47 1 0.02
48 8 0.13
49 4 0.06
50 16 0.26
51 10 0.16
ACGTcount: A:0.73, C:0.04, G:0.11, T:0.11
Consensus pattern (47 bp):
AAAATGAAAAAGAATGAAAAAAATCAAAAATCAAAATAAAAAAAATA
Found at i:6274876 original size:13 final size:13
Alignment explanation
Indices: 6274860--6274884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6274850 GAATGAAAAC
6274860 AAATGAAAAATGA
1 AAATGAAAAATGA
6274873 AAATGAAAAATG
1 AAATGAAAAATG
6274885 GAGAGGCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
AAATGAAAAATGA
Found at i:6276436 original size:70 final size:70
Alignment explanation
Indices: 6276322--6276476 Score: 256
Period size: 70 Copynumber: 2.2 Consensus size: 70
6276312 GTAATTCTTG
* * * *
6276322 CTCCTTGATTTCAGCCTTAAATGTTGCATGTTGTTGGCCGAATGGGTGCTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6276387 GCAGC
66 GCAGC
* *
6276392 TTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGTTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6276457 GCAGC
66 GCAGC
6276462 CTCCTTAATTTCAGC
1 CTCCTTAATTTCAGC
6276477 ATGAATTCAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 78 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (70 bp):
CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
GCAGC
Found at i:6279748 original size:15 final size:16
Alignment explanation
Indices: 6279730--6279776 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 16
6279720 CTGAGTCAAC
*
6279730 AAAAAATG-AGAATGA
1 AAAAAATGAAAAATGA
6279745 AAAAAATGAAAAATG-
1 AAAAAATGAAAAATGA
6279760 --AAAATGAAAAATGA
1 AAAAAATGAAAAATGA
6279774 AAA
1 AAA
6279777 TGAAAAATGG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
13 13 0.48
15 8 0.30
16 6 0.22
ACGTcount: A:0.72, C:0.00, G:0.15, T:0.13
Consensus pattern (16 bp):
AAAAAATGAAAAATGA
Found at i:6279756 original size:6 final size:6
Alignment explanation
Indices: 6279747--6279782 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
6279737 GAGAATGAAA
6279747 AAAATG AAAAATG AAAATG AAAAATG AAAATG AAAA
1 AAAATG -AAAATG AAAATG -AAAATG AAAATG AAAA
6279783 ATGGAGAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.57
7 12 0.43
ACGTcount: A:0.72, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:6279758 original size:7 final size:7
Alignment explanation
Indices: 6279746--6279785 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
6279736 TGAGAATGAA
6279746 AAAAATG
1 AAAAATG
6279753 AAAAATG
1 AAAAATG
6279760 -AAAATG
1 AAAAATG
6279766 AAAAATG
1 AAAAATG
6279773 -AAAATG
1 AAAAATG
6279779 AAAAATG
1 AAAAATG
6279786 GAGAGGCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.39
7 19 0.61
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:6279763 original size:13 final size:13
Alignment explanation
Indices: 6279747--6279785 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
6279737 GAGAATGAAA
6279747 AAAATGAAAAATG
1 AAAATGAAAAATG
6279760 AAAATGAAAAATG
1 AAAATGAAAAATG
6279773 AAAATGAAAAATG
1 AAAATGAAAAATG
6279786 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:6280967 original size:12 final size:12
Alignment explanation
Indices: 6280947--6280988 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
6280937 AAAGAAAAGG
6280947 TAAAAAAATAAA
1 TAAAAAAATAAA
*
6280959 TAAATAAATAAA
1 TAAAAAAATAAA
*
6280971 T--AAAAATATA
1 TAAAAAAATAAA
6280981 TAAAAAAA
1 TAAAAAAA
6280989 ACTGAGACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
10 8 0.32
12 17 0.68
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:6281343 original size:70 final size:70
Alignment explanation
Indices: 6281229--6281383 Score: 238
Period size: 70 Copynumber: 2.2 Consensus size: 70
6281219 GTAATTCTTG
* * * *
6281229 CTCCTTGATTTCAGCCTTAAATGTTGCATGTTGTTGGCCGAATGGGTGCTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
6281294 GAAGC
66 GAAGC
* * *
6281299 TTCCTTAATTTCAGCCTTAAATGATGCATGTTTTTGACCAAATGGGTGTTTGAAAATACCAACCA
1 CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
*
6281364 GCAGC
66 GAAGC
6281369 CTCCTTAATTTCAGC
1 CTCCTTAATTTCAGC
6281384 ATGAATTCAA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (70 bp):
CTCCTTAATTTCAGCCTTAAATGATGCATGTTGTTGACCAAATGGGTGCTTGAAAATACCAACCA
GAAGC
Found at i:6286002 original size:70 final size:70
Alignment explanation
Indices: 6285889--6286042 Score: 254
Period size: 70 Copynumber: 2.2 Consensus size: 70
6285879 TTGAATTCAT
* * * *
6285889 GCTGAAATTAAGGAGGCTGCTGGTTGGTATTTTCAAACACCCATTTGGTCAACAACATGCATCAT
1 GCTGAAATTAAGGAAGCTGCTGGTTGGTATTTTCAAACACCCATTCGGCCAACAACATGCAACAT
6285954 TTAAG
66 TTAAG
*
6285959 GCTGAAATTAAGGAAGCTGCTGGTTGGTATTTTCAAGCACCCATTCGGCCAACAACATGCAACAT
1 GCTGAAATTAAGGAAGCTGCTGGTTGGTATTTTCAAACACCCATTCGGCCAACAACATGCAACAT
6286024 TTAAG
66 TTAAG
*
6286029 GCTGAAATCAAGGA
1 GCTGAAATTAAGGA
6286043 GCAAGAATTA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 78 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (70 bp):
GCTGAAATTAAGGAAGCTGCTGGTTGGTATTTTCAAACACCCATTCGGCCAACAACATGCAACAT
TTAAG
Found at i:6286304 original size:4 final size:4
Alignment explanation
Indices: 6286297--6286323 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6286287 TTTTATATAT
6286297 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
6286324 TTACCTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:6287447 original size:175 final size:174
Alignment explanation
Indices: 6287156--6288229 Score: 1030
Period size: 175 Copynumber: 6.2 Consensus size: 174
6287146 GTTCATTATA
* * * *
6287156 CAGGTCTTATTTCCCTGAGATTACGGTGGAACAGACCGAAGAATTGCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
*
6287221 ATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
* *
6287286 ATTAAAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCAT
131 A-TAAAGATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCACAT
* * *
6287331 CAGGTCTTATCTCCCTGAGATTACAATGGAGCAGACCGAAGAATTTCAGATCTCATCTCCCTAAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * * *
6287396 ATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGTGGATTAAG
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
**
6287461 ATAAAGGATCTTATCTCTCTAAAGTTACAGCGGAGCAGATCACAT
131 ATAAA-GATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCACAT
* *
6287506 CAGGTCTTATCTCCCTGAGATTACAGTGGGGCAGACCGAAAAATTTCAGATCTTATCTCCCTGAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * *
6287571 ATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCT--C------T-CAATGGAGCAGATTGAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AA
** * * * * * * * *
6287627 GCTAGTA-ATCCTATCTCTTTGATA-TTACAGTGGAGCGGATTAAAAT
130 AATA-AAGATCTTATCTCTCT-AAAGTTACAGTAGAGCAGA-TCACAT
* * ** * * *
6287673 AAAGGATCTTATCTCTCTGA-AGTTACAGCAGAGCAGATC---GCA--TCAGGTCTTATCTCCCT
1 -CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCT
* ** * * * * *
6287732 GAGATTACAGTGGAGCAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAG
63 GAGATTACAGCGGAGCAGATTGAAGCTA-GT-A-ATCCTATCTCCCTGAGATTACAGTGGAGCGG
** * * * * * * * *
6287796 ATTGAAGCTAGTA-ATCCTATCTCCCT-GAGATTACAGTGGAGCGGATTAAAAT
125 ATT-AAAATA-AAGATCTTATCTCTCTAAAG-TTACAGTAGAGCAGA-TCACAT
* * * * * *
6287848 AAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC---G--TGTCAGATCTTATCTCCCT
1 -CAGG-TCTTATCTCCCTGAGA-TTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCT
* * *
6287907 GAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATT
63 GAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATT
* * * * *
6287972 AAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCACGT
128 AAAAT-AAAGATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCACAT
* * * * *
6288020 CAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAGAATTTCAGATCTTATCTTCCTAAG
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
6288085 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
66 ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
* * ****
6288150 ATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTGT
131 ATAAA-GATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCACAT
* *
6288195 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGA
1 CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGA
6288230 TTGAAGTTAG
Statistics
Matches: 757, Mismatches: 107, Indels: 70
0.81 0.11 0.07
Matches are distributed among these distances:
163 1 0.00
164 38 0.05
165 1 0.00
166 44 0.06
167 12 0.02
168 6 0.01
169 26 0.03
170 24 0.03
171 4 0.01
172 6 0.01
173 55 0.07
174 10 0.01
175 529 0.70
176 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (174 bp):
CAGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
ATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAA
ATAAAGATCTTATCTCTCTAAAGTTACAGTAGAGCAGATCACAT
Found at i:6287496 original size:88 final size:88
Alignment explanation
Indices: 6287203--6288437 Score: 493
Period size: 85 Copynumber: 14.3 Consensus size: 88
6287193 GAAGAATTGC
* *
6287203 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
6287268 ACAGTGGAGCGGATTAAAATTAA
66 ACAGTGGAGCGGATTAAGATTAA
* ** * * * * * *
6287291 AGATCTTATCTCTCTAA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATCTCCCTGAGAT
1 AGATCTTATCTCCCTAAGA-TTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
* * ** **
6287352 TACAATGGAGCAGACCGAAGAATTTC
65 TACAGTGGAGCGGA-TTAAG-ATTAA
* * *
6287378 AGATCTCATCTCCCTAAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
6287443 ACAGTGGAGTGGATTAAGA-TAA
66 ACAGTGGAGCGGATTAAGATTAA
* * * * *
6287465 AGGATCTTATCTCTCTAA-AGTTACAGCGGAGCAGA-TCACATC-AG--GTCTTATCTCCCTGAG
1 A-GATCTTATCTCCCTAAGA-TTACAGCGGAGCAGATTGA-AGCTAGTAATCCTATCTCCCTGAG
* * ** * **
6287525 ATTACAGTGGGGCAGACCGAAAAATTTC
63 ATTACAGTGGAGCGGA--TTAAGATTAA
* *
6287553 AGATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCT--C------T
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
* * * *
6287610 -CAATGGAGCAGATTGAAG-CTAGT
66 ACAGTGGAGCGGATT-AAGATTA-A
* ** * * * * ** * * *
6287633 A-ATCCTATCTCTTTGATATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA-A
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCT--AGTAATCCTATCTCCCTGAGA
** * * *
6287694 GTTACAGCAGAGCAGA-T-CGCA-T-C
64 -TTACAGTGGAGCGGATTAAG-ATTAA
* * * ** * * *
6287717 AGGTCTTATCTCCCTGAGATTACAGTGGAGCAGACCGAAG-AATTTCAGATCTTATCTCCCTGAG
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTA-GT-A-ATCCTATCTCCCTGAG
* * * *
6287781 ATTACAGCGGAGCAGATTGAAG-CTAGT
63 ATTACAGTGGAGCGGATT-AAGATTA-A
* * * * ** * * *
6287808 A-ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA-A
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCT--AGTAATCCTATCTCCCTGAGA
* ** * *
6287869 GTTACAGTAGAGTAGA-T-CG-TGT-C
64 -TTACAGTGGAGCGGATTAAGAT-TAA
* * *
6287892 AGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
* * *
6287957 ACAGTGGAGTGGATTAAAATGAA
66 ACAGTGGAGCGGATTAAGATTAA
* * * * * * * * *
6287980 GGATCTTATCTCTCTGAAG-TTACAGCAGAGTAGA-TCACG-TCAG--GTCTTATTTCCCTGAGA
1 AGATCTTATCTCCCT-AAGATTACAGCGGAGCAGATTGAAGCT-AGTAATCCTATCTCCCTGAGA
* * * **
6288040 TTACAGTGGAACAGACTGAAGAATTTC
64 TTACAGTGGAGCGGA-TTAAG-ATTAA
*
6288067 AGATCTTATCTTCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
6288132 ACAGTGGAGCGGATTAA-AATAA
66 ACAGTGGAGCGGATTAAGATTAA
* ** * * *
6288154 AGGATCTTATCTCTCTGAAG-TTACAGTAGAGTAGATTG-TG-TCAG--ATCTTATCTCCCTGAG
1 A-GATCTTATCTCCCT-AAGATTACAGCGGAGCAGATTGAAGCT-AGTAATCCTATCTCCCTGAG
* * *
6288214 ATTACAGCGGAGCAGATTGAAG-TTAGT
63 ATTACAGTGGAGCGGATT-AAGATTA-A
* * * ** * * * * *
6288241 A-ATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATG-AAG-GATCTTATCTCTCTGA-A
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATT-GAA-GCTAGTAATCCTATCTCCCTGAGA
* ** * *
6288302 GTTACAGTAGAGTAGA-T-CG-TGTCA
64 -TTACAGTGGAGCGGATTAAGAT-TAA
* * * *
6288326 A-ATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCCGAGATT
1 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
*
6288390 ACAGTGGAGCGGATTAA-AATAA
66 ACAGTGGAGCGGATTAAGATTAA
*
6288412 AGGATCTTATCTCTCTGAAG-TTACAG
1 A-GATCTTATCTCCCT-AAGATTACAG
6288438 TAGAGAAGAT
Statistics
Matches: 846, Mismatches: 211, Indels: 180
0.68 0.17 0.15
Matches are distributed among these distances:
78 3 0.00
79 36 0.04
80 5 0.01
81 11 0.01
82 1 0.00
83 2 0.00
84 10 0.01
85 277 0.33
86 29 0.03
87 151 0.18
88 212 0.25
89 17 0.02
90 90 0.11
91 1 0.00
92 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (88 bp):
AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
ACAGTGGAGCGGATTAAGATTAA
Found at i:6287641 original size:210 final size:210
Alignment explanation
Indices: 6287404--6287818 Score: 731
Period size: 210 Copynumber: 2.0 Consensus size: 210
6287394 AGATTACAGC
* *
6287404 GGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGTGGATTAAGATAAAGGA
1 GGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGA
*
6287469 TCTTATCTCTCTAAAGTTACAGCGGAGCAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
66 TCTTATCTCTCTAAAGTTACAGCAGAGCAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
*
6287534 GGGCAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTA
131 GAGCAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTA
6287599 ATCCTATCTCTCAAT
196 ATCCTATCTCTCAAT
* * *
6287614 GGAGCAGATTGAAGCTAGTAATCCTATCTCTTTGATATTACAGTGGAGCGGATTAAAATAAAGGA
1 GGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGA
* *
6287679 TCTTATCTCTCTGAAGTTACAGCAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTG
66 TCTTATCTCTCTAAAGTTACAGCAGAGCAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
* *
6287744 GAGCAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
131 GAGCAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTA
6287809 ATCCTATCTC
196 ATCCTATCTC
6287819 CCTGAGATTA
Statistics
Matches: 194, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
210 194 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (210 bp):
GGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAAGGA
TCTTATCTCTCTAAAGTTACAGCAGAGCAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
GAGCAGACCGAAAAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCTAGTA
ATCCTATCTCTCAAT
Found at i:6287913 original size:129 final size:129
Alignment explanation
Indices: 6287376--6288060 Score: 506
Period size: 129 Copynumber: 5.3 Consensus size: 129
6287366 CCGAAGAATT
* * * *
6287376 TCAGATCTCATCTCCCTAAGATTACAGCGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * * * * *
6287441 TTACAGTGGAGTGGATTAAGATAAAGGATCTTATCTCTCTAAAGTTACAGCGGAGCAGATCACA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCACG
* * * ** ** * *
6287505 TCAGGTCTTATCTCCCTGAGATTACAGTGGGGCAGACCGAA-AAATTTCAGATCTTATCTCCCTG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA-GT-A-ATCCTATCTCCCTG
* ** ** * * ** *
6287569 AGATTACAGCGGAGCAAATTGAAGCT--AGTAATCCTATCTCTC--AA--TGGAGCAGA-TTGAA
63 AGATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGAAGTTACAGCAGAGTAG-A
*
6287627 GCTA-G
125 TC-ACG
* ** * * * ** * * *
6287632 T-A-ATCCTATCTCTTTGATATTACAGTGGAGCGGATT-AAAATAAAG-GATCTTATCTCTCTGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGTAATCCTATCTCCCTGA
** * *** * * ** * *
6287693 -AGTTACAGCAGAGCAGA-TCGCAT-CAGG-TCTTATCTCCCTG-AGATTACAGTGGAGCAGACC
64 GA-TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAG-TTACAGCAGAGTAGATC
*
6287753 GAAG
127 -ACG
6287757 AATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCT
1 ----TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCT
*
6287822 GAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC
62 GAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATC
**
6287887 GTG
127 ACG
* *
6287890 TCAGATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
6287955 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCACG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCACG
* * * * *
6288019 TCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTGAAG
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG
6288061 AATTTCAGAT
Statistics
Matches: 430, Mismatches: 94, Indels: 64
0.73 0.16 0.11
Matches are distributed among these distances:
120 9 0.02
121 2 0.00
122 4 0.01
123 27 0.06
124 10 0.02
125 28 0.07
126 2 0.00
127 10 0.02
128 2 0.00
129 195 0.45
130 6 0.01
131 92 0.21
132 11 0.03
133 4 0.01
134 26 0.06
135 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCACG
Found at i:6287947 original size:304 final size:304
Alignment explanation
Indices: 6287616--6288358 Score: 1288
Period size: 304 Copynumber: 2.4 Consensus size: 304
6287606 CTCTCAATGG
* ** * * *
6287616 AGCAGATTGAAGCTAGTAATCCTATCTCTTTGATATTACAGTGGAGCGGATTAAAATAAAGGATC
1 AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
* *
6287681 TTATCTCTCTGAAGTTACAGCAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGATTACAGTGGA
66 TTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGA
*
6287746 GCAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
131 GCAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
6287811 CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
196 CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
6287876 TAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGA
261 TAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGA
6287920 AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
1 AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
* *
6287985 TTATCTCTCTGAAGTTACAGCAGAGTAGATCACGTCAGGTCTTATTTCCCTGAGATTACAGTGGA
66 TTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGA
* * *
6288050 ACAGACTGAAGAATTTCAGATCTTATCTTCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
131 GCAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
6288115 CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
196 CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
* *
6288180 TAGAGTAGATTGTGTCAGATCTTATCTCCCTGAGATTACAGCGG
261 TAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGA
6288224 AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
1 AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
* * ** * *
6288289 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAAATCTTATCTTCCTGAGATTACAGCGGA
66 TTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGA
6288354 GCAGA
131 GCAGA
6288359 TTGAAGATAG
Statistics
Matches: 414, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
304 414 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (304 bp):
AGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATGAAGGATC
TTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATCTCCCTGAGATTACAGTGGA
GCAGACCGAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAAT
CCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAG
TAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGCGA
Found at i:6288219 original size:129 final size:129
Alignment explanation
Indices: 6288065--6288487 Score: 711
Period size: 129 Copynumber: 3.3 Consensus size: 129
6288055 CTGAAGAATT
* * *
6288065 TCAGATCTTATCTTCCTAAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
*
6288130 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATTGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
*
6288194 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGTTAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* *
6288259 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
6288323 TCAAATCTTATCTTCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCCGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
* *
6288388 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
* * *
6288452 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGCAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGA
6288488 ATAAAGCAAC
Statistics
Matches: 275, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 275 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (129 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTG
Found at i:6289475 original size:2 final size:2
Alignment explanation
Indices: 6289468--6289501 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6289458 AGGAAGAAAT
6289468 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
6289502 AGTTCGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6298072 original size:26 final size:26
Alignment explanation
Indices: 6298041--6298101 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
6298031 ATAAGAGCCA
* * *
6298041 TAATCAGGAAGTTTACAAAGAAATTT
1 TAATCAGGAAGATCACAAAGAAACTT
* **
6298067 TAATCAGAAAGATCACAAAGAGCCTT
1 TAATCAGGAAGATCACAAAGAAACTT
6298093 TAATCAGGA
1 TAATCAGGA
6298102 GCTCTAAATA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGATCACAAAGAAACTT
Found at i:6299248 original size:51 final size:51
Alignment explanation
Indices: 6299192--6299515 Score: 227
Period size: 51 Copynumber: 6.4 Consensus size: 51
6299182 GCATGGACTG
* * * *
6299192 TGTGTAGGCCACTATGTGAAAGTGAAAGTGAT-GGTCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAACG-GAAAGTGATAGGTCACATGTGTAGTACTA
* * * * * *
6299243 TGTGTAGGCTACTACGTGTAC-CAGAA-TGATAGGTCGCATGTATAGTACTA
1 TGTGCAGGCTACTATGTGAACGGA-AAGTGATAGGTCACATGTGTAGTACTA
* * * * * *
6299293 TGTGCAGGCTACTATGCGTACCGGATAGCT--TCGATCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTG-AACGGAAAG-TGATAGGTCACATGTGTAGTACTA
* * * **
6299344 TGTGTAGGCTACTATGTGTAC-CAGAA-TGATAGGTCGTATGTGTAGTACTA
1 TGTGCAGGCTACTATGTGAACGGA-AAGTGATAGGTCACATGTGTAGTACTA
* * * * * *
6299394 TGTGCAGGCTACTATGCGTATCGGATAGCT--TCGATCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTG-AACGGAAAG-TGATAGGTCACATGTGTAGTACTA
* * *
6299445 TGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGTACTA
1 TGTGCAGGCTACTATGTG-AACGGAAAGTGATAGGTCACATGTGTAGTACTA
*
6299496 TGTGCATGCTACTATGTGAA
1 TGTGCAGGCTACTATGTGAA
6299516 TCCGCATCAT
Statistics
Matches: 209, Mismatches: 49, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
48 1 0.00
49 6 0.03
50 69 0.33
51 128 0.61
52 3 0.01
53 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
TGTGCAGGCTACTATGTGAACGGAAAGTGATAGGTCACATGTGTAGTACTA
Found at i:6299343 original size:101 final size:101
Alignment explanation
Indices: 6299226--6299511 Score: 466
Period size: 101 Copynumber: 2.8 Consensus size: 101
6299216 AAAGTGATGG
*
6299226 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTATAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
6299291 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* *
6299327 TCACGTGTGTAGTACTATGTGTAGGCTACTATGTGTACCAGAATGATAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
*
6299392 TATGTGCAGGCTACTATGCGTATCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * *
6299428 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
*
6299492 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
6299512 TGAATCCGCA
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
101 135 0.78
102 33 0.19
103 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:6299513 original size:26 final size:26
Alignment explanation
Indices: 6299433--6299513 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
6299423 TTCGATCACG
*
6299433 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
6299459 CGTGTA-T-CGGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
6299484 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
6299510 TGTG
1 TGTG
6299514 AATCCGCATC
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
24 1 0.02
25 17 0.41
26 22 0.54
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:6299636 original size:41 final size:42
Alignment explanation
Indices: 6299521--6299647 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 42
6299511 GTGAATCCGC
* *
6299521 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCAT
1 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
6299564 ATCCTTGACTGTGA-AAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGA-T-T-ATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
6299606 ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
6299648 GTGACGGTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 20 0.28
42 14 0.19
43 26 0.36
44 4 0.06
45 1 0.01
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
ATCATTGATTATAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:6311194 original size:30 final size:30
Alignment explanation
Indices: 6311160--6311219 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6311150 TTTCTAACTC
* *
6311160 ATTTTCTCTTCTTTCTTCA-ATTCTTTTTCA
1 ATTTTCTCTTCTGT-TTCACATTCCTTTTCA
*
6311190 ATTTTCTTTTCTGTTTCACATTCCTTTTCA
1 ATTTTCTCTTCTGTTTCACATTCCTTTTCA
6311220 CTCTCAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.13, C:0.23, G:0.02, T:0.62
Consensus pattern (30 bp):
ATTTTCTCTTCTGTTTCACATTCCTTTTCA
Found at i:6315333 original size:22 final size:24
Alignment explanation
Indices: 6315303--6315347 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
6315293 ATATTCAATT
6315303 ATTCTCAAACATACACAT-AAGTC
1 ATTCTCAAACATACACATGAAGTC
*
6315326 ATTC-CAAACATGCACATGAAGT
1 ATTCTCAAACATACACATGAAGT
6315348 AGCACAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (24 bp):
ATTCTCAAACATACACATGAAGTC
Found at i:6317807 original size:17 final size:16
Alignment explanation
Indices: 6317785--6317826 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
6317775 CCGGAAATTT
6317785 ATTTTATAATAATATAA
1 ATTTTATAATAA-ATAA
*
6317802 ATTTTATAATAACTAA
1 ATTTTATAATAAATAA
6317818 ATATTTATA
1 AT-TTTATA
6317827 TATTTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTATAATAAATAA
Done.