Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64473564
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1880000 characters in sequence are not A, C, G, or T
File 27 of 213
Found at i:7224973 original size:30 final size:30
Alignment explanation
Indices: 7224939--7225002 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
7224929 ACTTAACAAG
* *
7224939 CAAATGCTTTTAAGAA-ATTAACAAAATTAA
1 CAAATGCCTTTAA-AATAATAACAAAATTAA
7224969 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTTTAAAATAATAACAAAATTAA
7224999 -AAAT
1 CAAAT
7225003 AAAATAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 6 0.19
30 25 0.81
ACGTcount: A:0.56, C:0.11, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAACAAAATTAA
Found at i:7226188 original size:16 final size:16
Alignment explanation
Indices: 7226155--7226188 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7226145 GACGTAGGTA
*
7226155 AAAAATATTTTATGTT
1 AAAAATATTATATGTT
*
7226171 AAAAATATTATATTTT
1 AAAAATATTATATGTT
7226187 AA
1 AA
7226189 GGTTTTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
AAAAATATTATATGTT
Found at i:7226350 original size:23 final size:24
Alignment explanation
Indices: 7226319--7226365 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7226309 TATGAAAAAG
*
7226319 AAAAAAAATATTA-ATTATAATTT
1 AAAAAAAATAATATATTATAATTT
* *
7226342 AAAATAAATAATATTTTATAATTT
1 AAAAAAAATAATATATTATAATTT
7226366 TATAACTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAAAAAATAATATATTATAATTT
Found at i:7243945 original size:6 final size:6
Alignment explanation
Indices: 7243934--7243968 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
7243924 GCCGCTAGAA
7243934 CCTCTG CCTCTG CCTCTG CCTCTG CCTCTG CCTCT
1 CCTCTG CCTCTG CCTCTG CCTCTG CCTCTG CCTCT
7243969 ACCCCTTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.51, G:0.14, T:0.34
Consensus pattern (6 bp):
CCTCTG
Found at i:7243979 original size:18 final size:18
Alignment explanation
Indices: 7243937--7243980 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7243927 GCTAGAACCT
* *
7243937 CTGCCTCTGCCTCTGCCT
1 CTGCCTCTGCCTCTACCC
7243955 CTGCCTCTGCCTCTACCC
1 CTGCCTCTGCCTCTACCC
*
7243973 CTTCCTCT
1 CTGCCTCT
7243981 AGTAGAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.02, C:0.52, G:0.11, T:0.34
Consensus pattern (18 bp):
CTGCCTCTGCCTCTACCC
Found at i:7247736 original size:15 final size:15
Alignment explanation
Indices: 7247695--7247743 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
7247685 AAGAAAATAA
7247695 ATAAAAGATAT-AAAT
1 ATAAAA-ATATAAAAT
* *
7247710 ATAAGGATTATAAAAT
1 ATAA-AAATATAAAAT
7247726 ATAAAAATATAAAAT
1 ATAAAAATATAAAAT
7247741 ATA
1 ATA
7247744 GGTACGTACG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 19 0.68
16 9 0.32
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
ATAAAAATATAAAAT
Found at i:7248179 original size:3 final size:3
Alignment explanation
Indices: 7248144--7248227 Score: 55
Period size: 3 Copynumber: 27.3 Consensus size: 3
7248134 ATAAGAAAAC
* * * * * *
7248144 ATA ATA CTA ACA ATA GTA TTA ATA A-A TATA ATA ATA AAA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
*
7248189 A-A GATA ATA ATG ATA ATA ATA ATA ACTAA ATA ATA ATA A
1 ATA -ATA ATA ATA ATA ATA ATA ATA A-T-A ATA ATA ATA A
7248228 AAAAAATGCT
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
2 2 0.03
3 54 0.87
4 4 0.06
5 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7249100 original size:20 final size:20
Alignment explanation
Indices: 7249075--7249113 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7249065 GACGGCGCAA
**
7249075 GTGGTGGTGGTGACGTGACC
1 GTGGTGGTGACGACGTGACC
7249095 GTGGTGGTGACGACGTGAC
1 GTGGTGGTGACGACGTGAC
7249114 GTTGGCGGCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.15, G:0.49, T:0.23
Consensus pattern (20 bp):
GTGGTGGTGACGACGTGACC
Found at i:7267911 original size:52 final size:49
Alignment explanation
Indices: 7267826--7268192 Score: 449
Period size: 46 Copynumber: 7.6 Consensus size: 49
7267816 TTTGAGTACT
* ** *
7267826 TCTGATCAAGTG---ATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
7267872 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
7267924 TCTGATCAAGTG---ATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
7267970 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
7268022 TCTGATCAAGT---AATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
7268068 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAA-T--AAAGTGATAAGTGATAGCTTCGGCTATACTTA
* ** *
7268120 TCTGATCAAGAGAC---AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
*
7268166 TCTGATCAAGAGAC---AAAGTGATAAGTG
1 TCTGATCAAGTGACAATAAAGTGATAAGTG
7268193 GCTGCACTTA
Statistics
Matches: 291, Mismatches: 12, Indels: 36
0.86 0.04 0.11
Matches are distributed among these distances:
46 153 0.53
48 2 0.01
49 7 0.02
50 3 0.01
52 126 0.43
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (49 bp):
TCTGATCAAGTGACAATAAAGTGATAAGTGATAGCTTCGGCTATACTTA
Found at i:7267946 original size:98 final size:98
Alignment explanation
Indices: 7267826--7268181 Score: 595
Period size: 98 Copynumber: 3.6 Consensus size: 98
7267816 TTTGAGTACT
* *
7267826 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
7267891 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
7267924 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
7267989 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * *
7268022 TCTGATCAAGTAATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* *
7268087 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* * * *
7268120 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
7268182 AGTGATAAGT
Statistics
Matches: 244, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 244 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.30
Consensus pattern (98 bp):
TCTGATCAAGTGATAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:7268204 original size:37 final size:37
Alignment explanation
Indices: 7268156--7268301 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
7268146 GATAGCTTTA
*
7268156 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7268193 GCTGCACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7268230 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7268267 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7268302 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7273653 original size:83 final size:83
Alignment explanation
Indices: 7273514--7273736 Score: 326
Period size: 83 Copynumber: 2.7 Consensus size: 83
7273504 CAACTTTTCC
* * * *
7273514 TTTAATT-AGTCAATGAAATAGCGCCGTTTTGTTAGATTTTTAATGTATTTTTTGCGGCGTTTTT
1 TTTAATTCAGTCAATGAAATGGCGCCGTTTTGTTA-AATTTTAATATATTTTTTGCGGCGTTTGT
*
7273578 ATATAAAACGCCACTAATA
65 ATACAAAACGCCACTAATA
* *
7273597 TTTAATTCAG-CAATGAAACGGCACCGTTTTGTTAAATTCTTAATATATTTTTTGCGGCGTTTGT
1 TTTAATTCAGTCAATGAAATGGCGCCGTTTTGTTAAATT-TTAATATATTTTTTGCGGCGTTTGT
7273661 ATACAAAACGCCACTAATA
65 ATACAAAACGCCACTAATA
*
7273680 TTTAATTC-GTCAATGAAATGGCGCCGTTTGGTTAAATTTTAAATATATTTTTTGCGG
1 TTTAATTCAGTCAATGAAATGGCGCCGTTTTGTTAAATTTT-AATATATTTTTTGCGG
7273737 TTTTTGACCA
Statistics
Matches: 126, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
82 6 0.05
83 118 0.94
84 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (83 bp):
TTTAATTCAGTCAATGAAATGGCGCCGTTTTGTTAAATTTTAATATATTTTTTGCGGCGTTTGTA
TACAAAACGCCACTAATA
Found at i:7273903 original size:14 final size:14
Alignment explanation
Indices: 7273884--7273911 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7273874 ACATCATTAT
7273884 TAATATTATTTAAA
1 TAATATTATTTAAA
7273898 TAATATTATTTAAA
1 TAATATTATTTAAA
7273912 ATTTTGATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATTATTTAAA
Found at i:7274451 original size:15 final size:15
Alignment explanation
Indices: 7274416--7274453 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
7274406 TCCCAACACT
7274416 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
7274430 T-AATCCATAATCCC
1 TAAATCCATAATCCC
7274444 TAAATCCATA
1 TAAATCCATA
7274454 TGTAATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:7274792 original size:22 final size:21
Alignment explanation
Indices: 7274745--7274792 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7274735 ACCCCAGCCT
*
7274745 TTAAACCATAAACCATAACCC
1 TTAAACCATAAACCATAAACC
* *
7274766 CTAAACTCATAATCCATAAACC
1 TTAAAC-CATAAACCATAAACC
7274788 TTAAA
1 TTAAA
7274793 ATGGTAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (21 bp):
TTAAACCATAAACCATAAACC
Found at i:7275140 original size:41 final size:41
Alignment explanation
Indices: 7275025--7275482 Score: 447
Period size: 41 Copynumber: 11.2 Consensus size: 41
7275015 TAAATTATTT
* * *
7275025 TAAATCCCTGAGTATTAGCGGCGC-TTCTCAGAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCA-AAAACGCCGC
**** ** *
7275066 TAAA-AAAAGAG-AGTTAGCGGCGCTTAATCAAAAACGCCGT
1 TAAAGCCCTGAGCA-TTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
7275106 TAAAGCCCTGATCATTAGCGGTGCTTTCTTAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* ** * *
7275147 TAAATCCCTGAGCATTAGCGGCAATTTCTTAAAAACGCCGT
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
7275188 TAAAACCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * * *
7275229 TAAAGCCCTGACCATCAGCGGTGCTTTATCAAAAACACCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * * **
7275270 TAAAGCCTTGAGCGTTAGCGGCGCTTTATCAAAATCGTTGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* ** * * *
7275311 TAAATCTTTGACCATTAGCGGCGCTTCCTTAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
7275352 TAAAGCCCTGAGCATTAGGGGCGCTTTATCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * *
7275393 TAAAGGCCTCAGCATTAGTGGCGCTTTATCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
7275434 TAAAAG-CCTCAGTATTAGCGGTGCTTTCTCAAAAACGCCGC
1 T-AAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
7275475 TAAAGCCC
1 TAAAGCCC
7275483 CCGAAAACTC
Statistics
Matches: 340, Mismatches: 71, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.00
40 29 0.09
41 305 0.90
42 5 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:7275902 original size:14 final size:14
Alignment explanation
Indices: 7275840--7275908 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 14
7275830 TATTAATTTA
*
7275840 ATTTTATATAAAAT
1 ATTTTATTTAAAAT
7275854 ATTTTATTTCAAAAT
1 ATTTTATTT-AAAAT
* *
7275869 A--TAATTTAAAAC
1 ATTTTATTTAAAAT
***
7275881 AAAATATTTAAAAT
1 ATTTTATTTAAAAT
*
7275895 ATTTTATTTTAAAT
1 ATTTTATTTAAAAT
7275909 TATATTAAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 26 0.62
15 6 0.14
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTTTATTTAAAAT
Found at i:7275949 original size:23 final size:22
Alignment explanation
Indices: 7275903--7275949 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
7275893 ATATTTTATT
7275903 TTAAATTATATTAAAATATATA
1 TTAAATTATATTAAAATATATA
* *
7275925 TTAAATTATGATTAAATTATTTA
1 TTAAATTAT-ATTAAAATATATA
7275948 TT
1 TT
7275950 TTTATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAATTATATTAAAATATATA
Found at i:7275965 original size:10 final size:10
Alignment explanation
Indices: 7275898--7275965 Score: 68
Period size: 11 Copynumber: 6.7 Consensus size: 10
7275888 TTAAAATATT
*
7275898 TTATTTTAAA
1 TTATATTAAA
7275908 TTATATTAAAA
1 TTATATT-AAA
7275919 TATATATTAAA
1 T-TATATTAAA
7275930 TTATGATTAAA
1 TTAT-ATTAAA
*
7275941 TTAT-TT-AT
1 TTATATTAAA
*
7275949 TTTTATTAAA
1 TTATATTAAA
7275959 TTATATT
1 TTATATT
7275966 TAATAATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
8 4 0.08
9 4 0.08
10 16 0.33
11 18 0.38
12 6 0.12
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (10 bp):
TTATATTAAA
Found at i:7281005 original size:18 final size:21
Alignment explanation
Indices: 7280963--7281005 Score: 51
Period size: 19 Copynumber: 2.3 Consensus size: 21
7280953 TTATTTTTAA
7280963 AAATAAAATGTATTAAAAAGT
1 AAATAAAATGTATTAAAAAGT
7280984 --ATAAAAT-TA-TAAAAA-T
1 AAATAAAATGTATTAAAAAGT
7281000 AAATAA
1 AAATAA
7281006 TATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
16 1 0.05
17 6 0.30
18 6 0.30
19 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
AAATAAAATGTATTAAAAAGT
Found at i:7282800 original size:3 final size:3
Alignment explanation
Indices: 7282792--7282834 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7282782 CCAGATCAGA
7282792 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7282835 ATTCCAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7305927 original size:15 final size:15
Alignment explanation
Indices: 7305909--7305940 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7305899 TTTTAAAATT
*
7305909 AAAAAAATATTTTTA
1 AAAAAAATATTTCTA
7305924 AAAAAAATATTTCTA
1 AAAAAAATATTTCTA
7305939 AA
1 AA
7305941 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAAAAATATTTCTA
Found at i:7307426 original size:20 final size:20
Alignment explanation
Indices: 7307403--7307443 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7307393 CCGCACCCAT
*
7307403 CACCTACCCTCTGCCACCGC
1 CACCAACCCTCTGCCACCGC
*
7307423 CACCAACTCTCTGCCACCGC
1 CACCAACCCTCTGCCACCGC
7307443 C
1 C
7307444 GCAACCACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.59, G:0.10, T:0.15
Consensus pattern (20 bp):
CACCAACCCTCTGCCACCGC
Found at i:7308537 original size:26 final size:23
Alignment explanation
Indices: 7308473--7308537 Score: 60
Period size: 28 Copynumber: 2.7 Consensus size: 23
7308463 TATATTCTTT
*
7308473 TATATATAAATATA-TTTTTCTA
1 TATATATACATATACTTTTTCTA
*
7308495 TATATTTACATGCATACTTTTTGTACTA
1 TATATATACAT--ATAC-TTTT-T-CTA
7308523 TATATATACATATAC
1 TATATATACATATAC
7308538 ACTTATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
22 9 0.26
24 3 0.09
26 8 0.24
27 1 0.03
28 13 0.38
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (23 bp):
TATATATACATATACTTTTTCTA
Found at i:7308752 original size:27 final size:25
Alignment explanation
Indices: 7308721--7308784 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 25
7308711 ATGTGTCCCC
*
7308721 TTTTTATATAT-ATGTAAATCTCCATA
1 TTTTTATATATCATATAAAT-T-CATA
*
7308747 TATTTTACATATGCATATAAATTCATA
1 T-TTTTATATAT-CATATAAATTCATA
7308774 TTTTTATATAT
1 TTTTTATATAT
7308785 TTTATAATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
26 10 0.31
27 14 0.44
28 1 0.03
29 7 0.22
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (25 bp):
TTTTTATATATCATATAAATTCATA
Found at i:7321083 original size:46 final size:45
Alignment explanation
Indices: 7321016--7321487 Score: 210
Period size: 44 Copynumber: 10.8 Consensus size: 45
7321006 ATTATACAGG
*
7321016 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * *
7321062 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGT-A-A
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA-ATTCAGA
* * * * * *
7321106 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG------GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
* * * *
7321145 TCTTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATTCAGA
* *
7321186 TCTTATCTCCCTGATATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA-TTCAGA
* * * ** * *
7321232 TCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA--GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATTCAGA
* * * *
7321276 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCA-GA
* * * * **
7321319 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AATAAGAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGAAT-TCAGA
* * * *
7321363 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG-A--CACTA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCA-GA
* * * * *
7321406 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGAT-TAA-AA-TAAGAAA
1 TCTTATCTCCCTGAGA-TTACAGTGGAACAGATCAAAGAATTCAG--A
* * *
7321450 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
7321488 CACTATCCTA
Statistics
Matches: 330, Mismatches: 61, Indels: 70
0.72 0.13 0.15
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 23 0.07
40 1 0.00
41 27 0.08
42 12 0.04
43 58 0.18
44 126 0.38
45 9 0.03
46 70 0.21
47 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATTCAGA
Found at i:7321296 original size:44 final size:43
Alignment explanation
Indices: 7321229--7321568 Score: 278
Period size: 44 Copynumber: 7.8 Consensus size: 43
7321219 AAAGAATTTC
* *
7321229 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
*
7321272 GAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
1 -AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
** * * * * *
7321316 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGA-CA
*
7321359 GAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
1 -AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
** * * * * *
7321403 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATA
1 AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGACA
*
7321445 AGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
1 AG--ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
** * * * * *
7321490 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAA
1 AGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGA-CA
* * * *
7321533 AGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGAT
1 A-GATCTTATCTCCCTGAGATTACAGCGGAGCAGAT
7321569 CGCGTCGAGT
Statistics
Matches: 230, Mismatches: 52, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
42 13 0.06
43 86 0.37
44 122 0.53
45 9 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACA
Found at i:7321308 original size:131 final size:130
Alignment explanation
Indices: 7321143--7321433 Score: 304
Period size: 131 Copynumber: 2.2 Consensus size: 130
7321133 CGGATTAAAG
* * * * * *
7321143 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC-ACA-TCA-GGTCTTATCTCCCTGATA-TT
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGA-AGACACGATCCTATCTCCCTGA-AGTT
** * *
7321204 ACAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAG
64 ACAGTGGAACAGA-CAAA-AATAACAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAG
*
7321269 CCAGA
127 ACA-A
* *
7321274 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACACGATCCTATCTCCCTGAAGTTA
* * ** *
7321338 CAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
65 CAGTGGAACAGACAAAAATAACAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA
*
7321403 C
130 A
* *
7321404 TATCCTATCTCCCTGAAGTTACAGTGGAGC
1 GATCTTATCTCCCTGAAGTTACAGTGGAGC
7321434 GGATTAAAAT
Statistics
Matches: 132, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
130 26 0.20
131 74 0.56
132 6 0.05
133 26 0.20
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (130 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACACGATCCTATCTCCCTGAAGTTAC
AGTGGAACAGACAAAAATAACAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAA
Found at i:7321326 original size:87 final size:87
Alignment explanation
Indices: 7321235--7321570 Score: 548
Period size: 87 Copynumber: 3.9 Consensus size: 87
7321225 TTTCAGATCT
* * * * ***
7321235 TATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
7321300 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
7321322 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
7321387 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
*
7321409 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAAATCTTATCTCCCTGAGATTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
7321474 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACTATCC
* *
7321496 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA-AGGATCTTATCTCTCTGAGGTTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGA-GATCTTATCTCCCTGAGATTACAGC
* *
7321560 AGAGTAGATCG
65 GGAGCAGATCG
7321571 CGTCGAGTCT
Statistics
Matches: 235, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
86 1 0.00
87 234 1.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAGAGATCTTATCTCCCTGAGATTACAGCG
GAGCAGATCGAAGACACTATCC
Found at i:7321457 original size:131 final size:131
Alignment explanation
Indices: 7321229--7321477 Score: 299
Period size: 131 Copynumber: 1.9 Consensus size: 131
7321219 AAAGAATTTC
* * * *
7321229 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGATT
* * ** *
7321294 ACAGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATA
66 ACAGCGGAGCAGATCGAAAAAAAAATCCTATCTCCCTGAGA-TTACAGCGGAGCGGATTAAAATA
7321358 AG
130 AG
**
7321360 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-CTATCCTATCTCCCTGA-AGT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGA-T
* * * *
7321423 TACAGTGGAGCGGAT-TAAAATAAGAAATCTTATCTCCCTGAGATTACAGCGGAGC
65 TACAGCGGAGCAGATCGAAAA-AA-AAATCCTATCTCCCTGAGATTACAGCGGAGC
7321478 AGATCGAAGA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
129 4 0.04
130 29 0.29
131 65 0.66
132 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (131 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACAGAGATCCTATCTCCCTGAGATT
ACAGCGGAGCAGATCGAAAAAAAAATCCTATCTCCCTGAGATTACAGCGGAGCGGATTAAAATAA
G
Found at i:7324544 original size:44 final size:45
Alignment explanation
Indices: 7324495--7324589 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
7324485 TTACACCTCT
* *
7324495 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
7324539 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
7324584 ATTACA
1 ATTACA
7324590 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:7324619 original size:16 final size:16
Alignment explanation
Indices: 7324570--7324621 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
7324560 GATTTGCTAT
* *
7324570 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
7324586 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
7324602 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
7324618 TACA
1 TACA
7324622 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7341238 original size:21 final size:21
Alignment explanation
Indices: 7341205--7341253 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
7341195 TTATCACTCA
7341205 ATTTTGATATTTTAAAATTATT
1 ATTTT-ATATTTTAAAATTATT
* * *
7341227 ATTTTATCTTTTATATTTATT
1 ATTTTATATTTTAAAATTATT
*
7341248 TTTTTA
1 ATTTTA
7341254 AAAATAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTATATTTTAAAATTATT
Found at i:7345906 original size:4 final size:5
Alignment explanation
Indices: 7345879--7345907 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7345869 GTGAAACAAT
7345879 ATAAA ATAAA ATAAA ATAAA AT-AA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
7345908 GCACTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:7345917 original size:47 final size:46
Alignment explanation
Indices: 7345835--7345926 Score: 105
Period size: 47 Copynumber: 2.0 Consensus size: 46
7345825 CATAACAACT
* *
7345835 AAATAAAATAAATAAAAAAACAAATCAATAATATGTGAAACAATATA
1 AAATAAAATAAATAAAAAAACAAAGCAAT-ATATGTAAAACAATATA
* * *
7345882 AAATAAAATAAAATAAAATAAATAAAGCACT-TATGTAAAATAATA
1 AAATAAAAT-AAATAAAA-AAACAAAGCAATATATGTAAAACAATA
7345927 AAGAGCATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
47 21 0.55
48 8 0.21
49 9 0.24
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (46 bp):
AAATAAAATAAATAAAAAAACAAAGCAATATATGTAAAACAATATA
Found at i:7346345 original size:26 final size:25
Alignment explanation
Indices: 7346316--7346380 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
7346306 AAAAATAAGT
7346316 GTATATGTATATATATAGTACAAAAA
1 GTATATGTATATATATA-TACAAAAA
*
7346342 GTATGCATGTA-A-ATATATAGAAAAA
1 GTAT--ATGTATATATATATACAAAAA
*
7346367 -TATATTTATATATA
1 GTATATGTATATATA
7346381 AAAGAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 4 0.12
23 1 0.03
24 6 0.18
25 7 0.21
26 9 0.27
27 1 0.03
28 5 0.15
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (25 bp):
GTATATGTATATATATATACAAAAA
Found at i:7347454 original size:20 final size:20
Alignment explanation
Indices: 7347414--7347454 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7347404 TGGTGGTTGC
*
7347414 GGCGGTGGCAGAGAGTTGGT
1 GGCGGTGGCAGAGAGTAGGT
*
7347434 GGCGGTGGCAGAGGGTAGGT
1 GGCGGTGGCAGAGAGTAGGT
7347454 G
1 G
7347455 ATGGGTGCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.59, T:0.17
Consensus pattern (20 bp):
GGCGGTGGCAGAGAGTAGGT
Found at i:7348172 original size:74 final size:74
Alignment explanation
Indices: 7348084--7348291 Score: 398
Period size: 74 Copynumber: 2.8 Consensus size: 74
7348074 GATAAGATCC
* *
7348084 TTTAATCCACTCCACCGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGATAAG
1 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGATAAG
7348149 ATCTCTTAT
66 ATCTCTTAT
7348158 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGATAAG
1 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGATAAG
7348223 ATCTCTTAT
66 ATCTCTTAT
7348232 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTG
1 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTG
7348292 TAATCTCAGG
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 132 1.00
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.33
Consensus pattern (74 bp):
TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGATAAG
ATCTCTTAT
Found at i:7348337 original size:44 final size:43
Alignment explanation
Indices: 7348217--7348357 Score: 149
Period size: 44 Copynumber: 3.2 Consensus size: 43
7348207 CTGCTCCGCT
* * * *
7348217 GATAAGATCTCTTATTTTAATCCGCTCCACTGTAACTTCAGGGA
1 GATAAGATCTCTGACTTCAATCTGCTCCACTGTAAC-TCAGGGA
* ** * * *
7348261 GATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
1 GATAAGATCTCTGACTTCAATCTGCTCCACTGTAA-CTCAGGGA
*
7348304 GATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 GATAAGATCTCTGACTTCAATCTGCTCCACTGTAA-CTCAGGGA
7348348 GATAAGATCT
1 GATAAGATCT
7348358 GAAATTCCTT
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
43 31 0.40
44 47 0.60
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (43 bp):
GATAAGATCTCTGACTTCAATCTGCTCCACTGTAACTCAGGGA
Found at i:7348396 original size:46 final size:45
Alignment explanation
Indices: 7348324--7348570 Score: 141
Period size: 46 Copynumber: 5.7 Consensus size: 45
7348314 CTGGCTTCAA
* * *
7348324 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCCTTGG
1 TCTGTTCCACTGTAATCTCAAGGAGATAAGATCTG-AATTCCTTGG
* * *
7348370 TCTGTTCCACTGTAATCTCAAGGAGATAAGACCTG-A-T--GTGA
1 TCTGTTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCCTTGG
* *
7348411 TCT-TCTCTACTGTAA-CTTC-AGAGAGATAAGATCCTTTAA-TCC---G
1 TCTGT-TCCACTGTAATC-TCAAG-GAGATAAGAT-C-TGAATTCCTTGG
* * * *
7348454 -C---TCCATTGTAATCTCAAGGAGATAGGAT-T-ACTATCCTTGA
1 TCTGTTCCACTGTAATCTCAAGGAGATAAGATCTGAAT-TCCTTGG
* ** * *
7348494 TCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGG
1 TCTGTTCCACTGTAATCTCAAGGAGATAAGATCTG-AATTCCTTGG
*
7348540 TCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTGTTCCACTGTAATCTCAAGGAGATAAGA
7348571 CCTGTATAAT
Statistics
Matches: 155, Mismatches: 24, Indels: 44
0.70 0.11 0.20
Matches are distributed among these distances:
35 1 0.01
36 1 0.01
37 3 0.02
39 19 0.12
40 7 0.05
41 26 0.17
42 2 0.01
43 2 0.01
44 27 0.17
45 1 0.01
46 64 0.41
47 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
TCTGTTCCACTGTAATCTCAAGGAGATAAGATCTGAATTCCTTGG
Found at i:7360624 original size:9 final size:9
Alignment explanation
Indices: 7360610--7360682 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
7360600 CCATAACAAC
7360610 TAAATAAAA
1 TAAATAAAA
7360619 TAAATAAAA
1 TAAATAAAA
*
7360628 -AAA-CAAA
1 TAAATAAAA
* *
7360635 TCAATAATATG
1 TAAATAA-A-A
* *
7360646 TGAAACAATA
1 T-AAATAAAA
7360656 TAAATAAAA
1 TAAATAAAA
7360665 TAAAATAAAA
1 T-AAATAAAA
7360675 TAAATAAA
1 TAAATAAA
7360683 GCACTTATGT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
7 3 0.06
8 5 0.10
9 24 0.50
10 11 0.23
11 1 0.02
12 4 0.08
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.22
Consensus pattern (9 bp):
TAAATAAAA
Found at i:7360692 original size:46 final size:45
Alignment explanation
Indices: 7360610--7360701 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 45
7360600 CCATAACAAC
* *
7360610 TAAATAAAATAAATAAAAAAACAAATCAATAATATGTGAAACAATA
1 TAAATAAAATAAATAAAAAAACAAAGCAAT-ATATGTAAAACAATA
* * *
7360656 TAAATAAAATAAAATAAAATAAATAAAGCACT-TATGTAAAATAATA
1 TAAATAAAAT-AAATAAAA-AAACAAAGCAATATATGTAAAACAATA
7360702 AAGAGCATGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
46 22 0.56
47 8 0.21
48 9 0.23
ACGTcount: A:0.66, C:0.05, G:0.04, T:0.24
Consensus pattern (45 bp):
TAAATAAAATAAATAAAAAAACAAAGCAATATATGTAAAACAATA
Found at i:7360971 original size:25 final size:25
Alignment explanation
Indices: 7360918--7360971 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
7360908 GACACATAAG
* *
7360918 TATGTGTATATATTATAAAAATATA
1 TATGTGTATAGATTATAAAAAAATA
7360943 TATGTGTATAGA-TATACATAAAAAT-
1 TATGTGTATAGATTATA-A-AAAAATA
7360968 TATG
1 TATG
7360972 AAAATAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 4 0.16
25 16 0.64
26 5 0.20
ACGTcount: A:0.46, C:0.02, G:0.11, T:0.41
Consensus pattern (25 bp):
TATGTGTATAGATTATAAAAAAATA
Found at i:7361199 original size:3 final size:3
Alignment explanation
Indices: 7361184--7361245 Score: 51
Period size: 3 Copynumber: 21.0 Consensus size: 3
7361174 AAGAGCAACT
* *
7361184 ATA ATA ATG ATA ATA ATA ATA ATA CAAA ATA ATA AT- ATA AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA
7361228 GA-A AT- ATA ATA ATGA ATA
1 -ATA ATA ATA ATA AT-A ATA
7361246 GATGAGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
2 7 0.15
3 35 0.73
4 6 0.12
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7362213 original size:20 final size:20
Alignment explanation
Indices: 7362173--7362213 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7362163 TGGTGGTTGC
*
7362173 GGCGGTGGCAGAGAGTTGGT
1 GGCGGTGGCAGAGAGTAGGT
*
7362193 GGCGGTGGCAGAGGGTAGGT
1 GGCGGTGGCAGAGAGTAGGT
7362213 G
1 G
7362214 ATGGGTGCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.59, T:0.17
Consensus pattern (20 bp):
GGCGGTGGCAGAGAGTAGGT
Found at i:7363663 original size:15 final size:15
Alignment explanation
Indices: 7363645--7363675 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7363635 TTTTAAAAAA
*
7363645 TTTAGAAATATTTTT
1 TTTAAAAATATTTTT
7363660 TTTAAAAATATTTTT
1 TTTAAAAATATTTTT
7363675 T
1 T
7363676 AATTTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTAAAAATATTTTT
Found at i:7365568 original size:1 final size:1
Alignment explanation
Indices: 7365564--7365633 Score: 140
Period size: 1 Copynumber: 70.0 Consensus size: 1
7365554 TGCATATATT
7365564 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7365629 AAAAA
1 AAAAA
7365634 GTATATCTAG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 69 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7382970 original size:31 final size:33
Alignment explanation
Indices: 7382935--7382998 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
7382925 ATCTCACAAA
7382935 TTCAAATA-TCTC-TAATAC-AGATTCTTTGCTT
1 TTCAAATATTCTCATAATACAAG-TTCTTTGCTT
7382966 TTCAAATATTCTCATAATACAAGTTCTTTGCTT
1 TTCAAATATTCTCATAATACAAGTTCTTTGCTT
7382999 ACAACCGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 8 0.27
32 4 0.13
33 16 0.53
34 2 0.07
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (33 bp):
TTCAAATATTCTCATAATACAAGTTCTTTGCTT
Found at i:7384001 original size:19 final size:18
Alignment explanation
Indices: 7383974--7384041 Score: 61
Period size: 17 Copynumber: 3.8 Consensus size: 18
7383964 TATCATGCAA
7383974 TTAACCATTTATATACAAAT
1 TTAA-CATTT-TATACAAAT
*
7383994 TTCACA-TTTATACAAAT
1 TTAACATTTTATACAAAT
*
7384011 TTAACA--TTATTCAAATT
1 TTAACATTTTATACAAA-T
*
7384028 TTAACATTCTATAC
1 TTAACATTTTATAC
7384042 CAACAATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 8 0.20
17 21 0.52
18 2 0.05
19 6 0.15
20 3 0.08
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (18 bp):
TTAACATTTTATACAAAT
Found at i:7384025 original size:16 final size:16
Alignment explanation
Indices: 7383985--7384035 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
7383975 TAACCATTTA
*
7383985 TATACAAATTTCACATT
1 TATACAAATTTAACA-T
7384002 TATACAAATTTAACAT
1 TATACAAATTTAACAT
*
7384018 TATTCAAATTTTAACAT
1 TATACAAA-TTTAACAT
7384035 T
1 T
7384036 CTATACCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.26
17 23 0.74
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (16 bp):
TATACAAATTTAACAT
Found at i:7384098 original size:1 final size:1
Alignment explanation
Indices: 7384094--7384218 Score: 250
Period size: 1 Copynumber: 125.0 Consensus size: 1
7384084 GCAAAAAATT
7384094 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7384159 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7384219 TTTAAGCATA
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 124 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7384974 original size:28 final size:27
Alignment explanation
Indices: 7384942--7385069 Score: 157
Period size: 28 Copynumber: 4.6 Consensus size: 27
7384932 ATTTAATAAG
* * *
7384942 CTCGCACACTTAGTGTTCAATAATCAAA
1 CTCGCACACTTAGTGTT-TACAATTAAA
*
7384970 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTG-TTTACAATTAAA
*
7384998 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTG-TTTACAATTAAA
*
7385026 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTG-TTTACAATTAAA
*
7385054 TTCGCACACTTAGTGT
1 CTCGCACACTTAGTGT
7385070 CGAAAATCAA
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
27 1 0.01
28 87 0.97
29 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (27 bp):
CTCGCACACTTAGTGTTTACAATTAAA
Found at i:7385009 original size:56 final size:56
Alignment explanation
Indices: 7384942--7385069 Score: 193
Period size: 56 Copynumber: 2.3 Consensus size: 56
7384932 ATTTAATAAG
* *
7384942 CTCGCACACTTAGTGTTCAATAATCAAACTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGTTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
* * * *
7384998 CTCGCACACTTAGTGCTCTACAATTAAACTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGTTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
*
7385054 TTCGCACACTTAGTGT
1 CTCGCACACTTAGTGT
7385070 CGAAAATCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (56 bp):
CTCGCACACTTAGTGTTCAACAATCAAACTCGCACACTTAGTGCTTTACAATTAAA
Found at i:7391348 original size:23 final size:23
Alignment explanation
Indices: 7391321--7391943 Score: 268
Period size: 23 Copynumber: 26.7 Consensus size: 23
7391311 ACTACATATT
7391321 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
7391344 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
*
7391367 ACAAAATTTGG-CAGCAT-TGATTC
1 AC-AAATTTGGACAGCATGT-ATAC
* * ** *
7391390 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
7391414 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* *
7391437 ACAAAATAT-AACAGCATGTATGTAC
1 AC-AAATTTGGACAGCATGTA--TAC
7391462 A-AAATTT-GACAGCATTGCT-T-C
1 ACAAATTTGGACAGCA-TG-TATAC
* * **
7391483 ACCAAAATTGGGCAGCATACATAC
1 A-CAAATTTGGACAGCATGTATAC
7391507 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
7391530 ACAAAATTT-AATAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
7391553 ACAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
7391576 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
7391600 ACAAATTTGGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
7391623 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
7391646 ACAAAATTGGACAGCATTTATTCAC
1 ACAAATTTGGACAGCATGTA-T-AC
* * **
7391671 CCAAAATTAGG-CAGCATACATAC
1 AC-AAATTTGGACAGCATGTATAC
*
7391694 ACAAATTTGGACAGCATTTATAC
1 ACAAATTTGGACAGCATGTATAC
* * * *
7391717 ACAAAATTT-AATAGTATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
* *
7391740 ACAAAATTGGACAGCAT-TGATTC
1 ACAAATTTGGACAGCATGT-ATAC
* * ** *
7391763 ACCAAAATTGGGCAGCATACATAT
1 A-CAAATTTGGACAGCATGTATAC
*
7391787 ACAAATTTAGACAGCACT-TATAC
1 ACAAATTTGGACAGCA-TGTATAC
* * *
7391810 ACAAAATAT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
*
7391833 ACAAAATTGGACAGCAT-TAATTCAC
1 ACAAATTTGGACAGCATGT-A-T-AC
* * **
7391858 CCAAAATTAGG-CAGCATACATAC
1 AC-AAATTTGGACAGCATGTATAC
*
7391881 ACAAATTTGGACAGCATTTATAC
1 ACAAATTTGGACAGCATGTATAC
* *
7391904 ACAAAATTT-AACAGCATGTATAT
1 AC-AAATTTGGACAGCATGTATAC
7391927 ACAAAATTT-GACAGCAT
1 AC-AAATTTGGACAGCAT
7391944 TGATTTATCA
Statistics
Matches: 452, Mismatches: 98, Indels: 100
0.70 0.15 0.15
Matches are distributed among these distances:
21 2 0.00
22 42 0.09
23 271 0.60
24 102 0.23
25 23 0.05
26 12 0.03
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (23 bp):
ACAAATTTGGACAGCATGTATAC
Found at i:7391424 original size:93 final size:93
Alignment explanation
Indices: 7391313--7391974 Score: 1083
Period size: 93 Copynumber: 7.1 Consensus size: 93
7391303 CTAACTATAC
7391313 TACATATTACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGG
1 TACATA-TACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAA-TTGG
7391378 -CAGCATTGATTCACCAAAATTGGGCAGCA
64 ACAGCATTGATTCACCAAAATTGGGCAGCA
* *
7391407 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATGTACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
*
7391472 AGCATTGCTTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
* * *
7391500 TACATACACAAATTTGGACAGCACTTATACACAAAATTTAATAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
7391565 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
7391593 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
7391658 AGCATTTATTCACCCAAAATTAGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * * *
7391687 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAATAGTATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
7391752 AGCATTGATTCACCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
*
7391780 TACATATACAAATTTAGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
7391845 AGCATTAATTCACCCAAAATTAGGCAGCA
66 AGCATTGATTCA-CCAAAATTGGGCAGCA
* * * *
7391874 TACATACACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGAC
1 TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
* *
7391939 AGCATTGATTTATCAAAATTGGGCAGCA
66 AGCATTGATTCACCAAAATTGGGCAGCA
7391967 TACATATA
1 TACATATA
7391975 ACAATTGGCA
Statistics
Matches: 526, Mismatches: 39, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
92 3 0.01
93 346 0.66
94 177 0.34
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.27
Consensus pattern (93 bp):
TACATATACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTGGAC
AGCATTGATTCACCAAAATTGGGCAGCA
Found at i:7391771 original size:187 final size:187
Alignment explanation
Indices: 7391321--7391974 Score: 1141
Period size: 187 Copynumber: 3.5 Consensus size: 187
7391311 ACTACATATT
*
7391321 ACAAATTTGGACAGCACTTATACACAAAATATAACAGCATGTATATACAAAATTTGG-CAGCATT
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAA-TTGGACAGCATT
7391385 GATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACA
65 GATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACA
* * ** *
7391450 GCATGTATGTACAAAATTTGACAGCATTGCTTCA-CCAAAATTGGGCAGCATACATAC
130 GCATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
*
7391507 ACAAATTTGGACAGCACTTATACACAAAATTTAATAGCATGTATATACAAAATTGGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
7391572 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
66 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
*
7391637 CATGTATATACAAAATTGGACAGCATTTATTCACCCAAAATTAGGCAGCATACATAC
131 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
* * *
7391694 ACAAATTTGGACAGCATTTATACACAAAATTTAATAGTATGTATATACAAAATTGGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
*
7391759 ATTCACCAAAATTGGGCAGCATACATATACAAATTTAGACAGCACTTATACACAAAATATAACAG
66 ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
7391824 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
131 CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
* *
7391881 ACAAATTTGGACAGCATTTATACACAAAATTTAACAGCATGTATATACAAAATTTGACAGCATTG
1 ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
* *
7391946 ATTTATCAAAATTGGGCAGCATACATATA
66 ATTCACCAAAATTGGGCAGCATACATATA
7391975 ACAATTGGCA
Statistics
Matches: 450, Mismatches: 16, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
185 4 0.01
186 152 0.34
187 294 0.65
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (187 bp):
ACAAATTTGGACAGCACTTATACACAAAATTTAACAGCATGTATATACAAAATTGGACAGCATTG
ATTCACCAAAATTGGGCAGCATACATATACAAATTTGGACAGCACTTATACACAAAATATAACAG
CATGTATATACAAAATTGGACAGCATTAATTCACCCAAAATTAGGCAGCATACATAC
Found at i:7392744 original size:28 final size:28
Alignment explanation
Indices: 7392712--7392838 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
7392702 ATTTAATAAG
* * *
7392712 CTCGCACACTTAGTGCTCAATAATCAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
7392740 CTCGCACACTTAGTGCTTTACCATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
7392768 CTCGCACACTTAGTGCTCTACAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
* *
7392796 CTCGCACACTTAGTGCTTTATAATTAAA
1 CTCGCACACTTAGTGCTCTACAATTAAA
*
7392824 TTCGCACACTTAGTG
1 CTCGCACACTTAGTG
7392839 TCGAAAATCA
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
CTCGCACACTTAGTGCTCTACAATTAAA
Found at i:7393457 original size:9 final size:9
Alignment explanation
Indices: 7393443--7393510 Score: 84
Period size: 9 Copynumber: 7.4 Consensus size: 9
7393433 TTTGATTAAA
7393443 AATTACCCG
1 AATTACCCG
7393452 AATTACCCG
1 AATTACCCG
7393461 AATTACCCG
1 AATTACCCG
*
7393470 AATTAACCG
1 AATTACCCG
7393479 AATTA-CCG
1 AATTACCCG
*
7393487 AAAAATACCCG
1 --AATTACCCG
*
7393498 AATTACCTG
1 AATTACCCG
7393507 AATT
1 AATT
7393511 TTTTTTTATT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
8 3 0.06
9 42 0.81
10 4 0.08
11 3 0.06
ACGTcount: A:0.40, C:0.26, G:0.10, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:7393670 original size:13 final size:13
Alignment explanation
Indices: 7393652--7393681 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7393642 TTTTAGTTTT
7393652 ATTGGGTTGAGTA
1 ATTGGGTTGAGTA
*
7393665 ATTGGGTTGGGTA
1 ATTGGGTTGAGTA
7393678 ATTG
1 ATTG
7393682 AGTTTGGGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGAGTA
Found at i:7396460 original size:228 final size:231
Alignment explanation
Indices: 7396226--7396728 Score: 580
Period size: 230 Copynumber: 2.2 Consensus size: 231
7396216 TAATACAACG
*
7396226 CCGCTAAAT-ATCAGTATTAGCGGCGCTT-CTAGTTAAGCACCGCAAGATAT-GCACACCAAAAC
1 CCGCTAAATCAT-ATTATTAGCGGCGCTTACTAGTTAAGCACCGCAAGATATAGCA-ACCAAAAC
* * * *
7396288 G-TAGAGCTT-GGTATTGAGGTATATTAG-ATGTAGTGGCGCTTT-C-AGAAAACGCTGCAAAAG
64 GCTA-AGCTTAGATATTGACGTATACTAGAAT-TAGTGGCG-TTTACAAGAAAACGCCGCAAAA-
* * * * *
7396348 T-ATACTATTAGCGGCACTTTCTTAGAAGTGCCGCAATATATATTAACGGAAAAGCTGCGTTTAA
125 TCATACTATTAGCAGCACTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAAAGCTACGTTTAA
* *
7396412 ATCTTGATGTATACTGGAGTTAGTGGCGTTCACGAGAAATCA
190 ATCTTGATGTATACGGGAATTAGTGGCGTTCACGAGAAATCA
* * ** *
7396454 CCGCTAAATCATATTATTAGCGGCGCTTGCTAAG--AAGCGCCGCAAGATATATTAACCTAAACG
1 CCGCTAAATCATATTATTAGCGGCGCTTACT-AGTTAAGCACCGCAAGATATAGCAACCAAAACG
* * * * * *
7396517 CTACGTTTAGATCTTGACGTATACTGGAATTAGTGGCGTTTACAAGAAATCGCCGCTAAATCATA
65 CTAAGCTTAGATATTGACGTATACTAGAATTAGTGGCGTTTACAAGAAAACGCCGCAAAATCATA
* * * *
7396582 TTATTGGCAGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTT
130 CTATTAGCAGCACTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAAAGCTACGTTTAAATCTT
*
7396647 GATGTATACGGGAATTAGTGGCGTTCACGAGAAATCG
195 GATGTATACGGGAATTAGTGGCGTTCACGAGAAATCA
* * *
7396684 CTGCTAAATCATATTATTAGCGGCGCTTATTTGTT-AGCACCGCAA
1 CCGCTAAATCATATTATTAGCGGCGCTTACTAGTTAAGCACCGCAA
7396729 AAGATCTTTC
Statistics
Matches: 231, Mismatches: 32, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
228 53 0.23
229 31 0.13
230 147 0.64
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (231 bp):
CCGCTAAATCATATTATTAGCGGCGCTTACTAGTTAAGCACCGCAAGATATAGCAACCAAAACGC
TAAGCTTAGATATTGACGTATACTAGAATTAGTGGCGTTTACAAGAAAACGCCGCAAAATCATAC
TATTAGCAGCACTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAAAGCTACGTTTAAATCTTG
ATGTATACGGGAATTAGTGGCGTTCACGAGAAATCA
Found at i:7396507 original size:115 final size:115
Alignment explanation
Indices: 7396353--7396711 Score: 547
Period size: 115 Copynumber: 3.1 Consensus size: 115
7396343 AAAAGTATAC
* * * * * *
7396353 TATTAGCGGCACTTTCTTAGAAGTGCCGCAATATATATTAACGGAAAAGCTGCGTTTAAATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTTG
* *
7396418 ATGTATACTGGAGTTAGTGGCGTTCACGAGAAATCACCGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
* * * *
7396468 TATTAGCGGCGCTTGCTAAGAAGCGCCGCAAGATATATTAACCTAAACGCTACGTTTAGATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTTG
* * *
7396533 ACGTATACTGGAATTAGTGGCGTTTACAAGAAATCGCCGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
* *
7396583 TATTGGCAGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTTG
1 TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTTG
* *
7396648 ATGTATACGGGAATTAGTGGCGTTCACGAGAAATCGCTGCTAAATCATAT
66 ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
7396698 TATTAGCGGCGCTT
1 TATTAGCGGCGCTT
7396712 ATTTGTTAGC
Statistics
Matches: 216, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
115 216 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (115 bp):
TATTAGCGGCGCTTTCTTAGAAGCGCCGCAAGATATATTAACCGAAACGCTACGTTTAAATCTTG
ATGTATACTGGAATTAGTGGCGTTCACGAGAAATCGCCGCTAAATCATAT
Found at i:7398364 original size:45 final size:45
Alignment explanation
Indices: 7398304--7398394 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
7398294 TTTTGCGTCC
* *
7398304 TTCTTGCCCAATTTCTTGAATTCCCAAATCCGTAAATCGCCTCCT
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
* *
7398349 TTCTTGCCTAATTTCTTGAAATCCGAAATCCCTAAATCGCCTCCT
1 TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
7398394 T
1 T
7398395 CCTCTTTCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (45 bp):
TTCTTGCCCAATTTCTTGAAATCCCAAATCCCTAAATCGCCTCCT
Found at i:7399018 original size:23 final size:23
Alignment explanation
Indices: 7398991--7399049 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
7398981 ATTTTATACA
7398991 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
7399014 TTAAAGTATGCAAAAACATGTAC
1 TTAAAGTATGCAAAAACATGTAC
7399037 TTAAAGTATGCAA
1 TTAAAGTATGCAA
7399050 CAGAGCCTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (23 bp):
TTAAAGTATGCAAAAACATGTAC
Found at i:7400097 original size:28 final size:28
Alignment explanation
Indices: 7400066--7400151 Score: 77
Period size: 27 Copynumber: 3.1 Consensus size: 28
7400056 ATTTACCTAA
7400066 TTAAATAAATTGTATTTAAAGTTATATT
1 TTAAATAAATTGTATTTAAAGTTATATT
** * * * *
7400094 TTAAAT-TTTTTTATTTTAATTTACCTA-A
1 TTAAATAAATTGTATTTAAAGTTA--TATT
*
7400122 TTAAATAAATTGTATTTAAAGTTTTATT
1 TTAAATAAATTGTATTTAAAGTTATATT
7400150 TT
1 TT
7400152 TTAAAAATAT
Statistics
Matches: 41, Mismatches: 13, Indels: 8
0.66 0.21 0.13
Matches are distributed among these distances:
27 14 0.34
28 14 0.34
29 13 0.32
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (28 bp):
TTAAATAAATTGTATTTAAAGTTATATT
Found at i:7400122 original size:56 final size:57
Alignment explanation
Indices: 7400045--7400151 Score: 198
Period size: 56 Copynumber: 1.9 Consensus size: 57
7400035 TTTTATTCTA
7400045 TTTTATTTTTAATTTACCTAATTAAATAAATTGTATTTAAAGTTATATTTTAAATTT
1 TTTTATTTTTAATTTACCTAATTAAATAAATTGTATTTAAAGTTATATTTTAAATTT
*
7400102 TTTTA-TTTTAATTTACCTAATTAAATAAATTGTATTTAAAGTTTTATTTT
1 TTTTATTTTTAATTTACCTAATTAAATAAATTGTATTTAAAGTTATATTTT
7400152 TTAAAAATAT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 44 0.90
57 5 0.10
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (57 bp):
TTTTATTTTTAATTTACCTAATTAAATAAATTGTATTTAAAGTTATATTTTAAATTT
Found at i:7400289 original size:9 final size:9
Alignment explanation
Indices: 7400221--7400301 Score: 67
Period size: 9 Copynumber: 9.0 Consensus size: 9
7400211 GTTCAAATTT
*
7400221 CATATCTTA
1 CATAACTTA
* *
7400230 CGTAATTTA
1 CATAACTTA
*
7400239 CATATCTTA
1 CATAACTTA
7400248 CATAA-TT-
1 CATAACTTA
7400255 CATAACTTA
1 CATAACTTA
*
7400264 CACAACTTA
1 CATAACTTA
*
7400273 AATTTAACTTA
1 CA--TAACTTA
7400284 CATAACTTA
1 CATAACTTA
*
7400293 TATAACTTA
1 CATAACTTA
7400302 TTAATATTTA
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
7 5 0.09
8 4 0.07
9 40 0.71
11 7 0.12
ACGTcount: A:0.41, C:0.19, G:0.01, T:0.40
Consensus pattern (9 bp):
CATAACTTA
Found at i:7400327 original size:19 final size:19
Alignment explanation
Indices: 7400305--7400348 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
7400295 TAACTTATTA
* * *
7400305 ATATTTATATATAGTTTAT
1 ATATATATATAAAATTTAT
*
7400324 ATATATATTTAAAATTTAT
1 ATATATATATAAAATTTAT
7400343 ATATAT
1 ATATAT
7400349 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
ATATATATATAAAATTTAT
Found at i:7400353 original size:19 final size:19
Alignment explanation
Indices: 7400319--7400356 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7400309 TTATATATAG
7400319 TTTATATATATATTTAAAA
1 TTTATATATATATTTAAAA
*
7400338 TTTATATATATTTTTAAAA
1 TTTATATATATATTTAAAA
7400357 ATTGATACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTATATATATATTTAAAA
Found at i:7400411 original size:23 final size:22
Alignment explanation
Indices: 7400361--7400561 Score: 65
Period size: 22 Copynumber: 9.3 Consensus size: 22
7400351 TTAAAAATTG
7400361 ATACATTACATAACTTACATAAC
1 ATACA-TACATAACTTACATAAC
*
7400384 CTACATACATAAGCTTACAT---
1 ATACATACATAA-CTTACATAAC
*
7400404 ATA-ATACATAACTTATATAAC
1 ATACATACATAACTTACATAAC
* * * *
7400425 TTAAATTTAGCA-ATCATATCATAAC
1 ATACA--TA-CATAACTTA-CATAAC
* *
7400450 TTACATACATAA-TTAGCA-ATC
1 ATACATACATAACTTA-CATAAC
*
7400471 AT--AT-CACAACTTACATAACC
1 ATACATACATAACTTACATAA-C
*
7400491 A-ACATA-ATGACTTACATAATAAC
1 ATACATACATAACTTAC---ATAAC
* *
7400514 CTACATA-ATAACTTACATAATA
1 ATACATACATAACTTACATAA-C
7400536 ATACATA-ATAA--TACATAAC
1 ATACATACATAACTTACATAAC
*
7400555 ATCCATA
1 ATACATA
7400562 AATTAAATAA
Statistics
Matches: 134, Mismatches: 23, Indels: 46
0.66 0.11 0.23
Matches are distributed among these distances:
18 12 0.09
19 20 0.15
20 11 0.08
21 18 0.13
22 24 0.18
23 15 0.11
24 23 0.17
25 11 0.08
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (22 bp):
ATACATACATAACTTACATAAC
Found at i:7400469 original size:31 final size:32
Alignment explanation
Indices: 7400378--7400487 Score: 109
Period size: 31 Copynumber: 3.4 Consensus size: 32
7400368 ACATAACTTA
* *
7400378 CATAACCTACATACATAAGCTTA-CATATAATA-
1 CATAACTTACATACATAA-CTTAGCA-ATCATAT
* * *
7400410 CATAACTTATATAACTTAAATTTAGCAATCATAT
1 CATAACTTACAT-ACAT-AACTTAGCAATCATAT
7400444 CATAACTTACATACATAA-TTAGCAATCATAT
1 CATAACTTACATACATAACTTAGCAATCATAT
*
7400475 CACAACTTACATA
1 CATAACTTACATA
7400488 ACCAACATAA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
31 25 0.38
32 12 0.18
33 14 0.21
34 15 0.23
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.32
Consensus pattern (32 bp):
CATAACTTACATACATAACTTAGCAATCATAT
Found at i:7400505 original size:21 final size:21
Alignment explanation
Indices: 7400478--7400554 Score: 68
Period size: 24 Copynumber: 3.6 Consensus size: 21
7400468 ATCATATCAC
7400478 AACTTACATAACCAACATAAT
1 AACTTACATAACCAACATAAT
* *
7400499 GACTTACATAATAACCTACATAAT
1 AACTTAC---ATAACCAACATAAT
**
7400523 AACTTACATAATAATACATAAT
1 AACTTACATAACCA-ACATAAT
7400545 AA--TACATAAC
1 AACTTACATAAC
7400555 ATCCATAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
20 7 0.16
21 10 0.22
22 9 0.20
24 19 0.42
ACGTcount: A:0.52, C:0.19, G:0.01, T:0.27
Consensus pattern (21 bp):
AACTTACATAACCAACATAAT
Found at i:7400509 original size:12 final size:12
Alignment explanation
Indices: 7400492--7400653 Score: 79
Period size: 12 Copynumber: 13.8 Consensus size: 12
7400482 TACATAACCA
*
7400492 ACATAATGACTT
1 ACATAATAACTT
*
7400504 ACATAATAACCT
1 ACATAATAACTT
7400516 ACATAATAACTT
1 ACATAATAACTT
7400528 ACATAATAA--T
1 ACATAATAACTT
7400538 ACATAATAA--T
1 ACATAATAACTT
* * *
7400548 ACATAACATCCAT
1 ACATAATA-ACTT
* *
7400561 AAATTAAATAAGTT
1 ACA-T-AATAACTT
**
7400575 ACATAATACACAA
1 ACATAATA-ACTT
* * *
7400588 AAACAAAAACTT
1 ACATAATAACTT
7400600 AC---ATAACTT
1 ACATAATAACTT
* *
7400609 ACATAATATCCT
1 ACATAATAACTT
**
7400621 ACATCCCT-ACTT
1 ACAT-AATAACTT
7400633 ACATAATAACTT
1 ACATAATAACTT
7400645 ACATAATAA
1 ACATAATAA
7400654 TACATACTCT
Statistics
Matches: 110, Mismatches: 29, Indels: 22
0.68 0.18 0.14
Matches are distributed among these distances:
9 8 0.07
10 18 0.16
11 1 0.01
12 65 0.59
13 11 0.10
14 4 0.04
15 3 0.03
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.28
Consensus pattern (12 bp):
ACATAATAACTT
Found at i:7400519 original size:24 final size:24
Alignment explanation
Indices: 7400485--7400553 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7400475 CACAACTTAC
* *
7400485 ATAACCAACATAATGACTTACATA
1 ATAACCTACATAATAACTTACATA
7400509 ATAACCTACATAATAACTTACATA
1 ATAACCTACATAATAACTTACATA
7400533 ATAA--TACATAATAA--TACATA
1 ATAACCTACATAATAACTTACATA
7400553 A
1 A
7400554 CATCCATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.16
22 10 0.23
24 26 0.60
ACGTcount: A:0.54, C:0.17, G:0.01, T:0.28
Consensus pattern (24 bp):
ATAACCTACATAATAACTTACATA
Found at i:7400668 original size:19 final size:19
Alignment explanation
Indices: 7400638--7400688 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
7400628 TACTTACATA
7400638 ATAACTTACATAATAATAC
1 ATAACTTACATAATAATAC
7400657 AT-ACTCTACATAATAATAC
1 ATAACT-TACATAATAATAC
7400676 ATAACTTACATAA
1 ATAACTTACATAA
7400689 GACATAACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.10
19 24 0.80
20 3 0.10
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAACTTACATAATAATAC
Found at i:7400685 original size:9 final size:9
Alignment explanation
Indices: 7400638--7400756 Score: 63
Period size: 9 Copynumber: 13.4 Consensus size: 9
7400628 TACTTACATA
7400638 ATAACTTAC
1 ATAACTTAC
7400647 ATAA-TAATAC
1 ATAACT--TAC
7400657 AT-ACTCTAC
1 ATAACT-TAC
7400666 ATAA-TAATAC
1 ATAACT--TAC
7400676 ATAACTTAC
1 ATAACTTAC
*
7400685 ATAA--GAC
1 ATAACTTAC
*
7400692 ATAACGTAC
1 ATAACTTAC
* *
7400701 ATAAGTTTC
1 ATAACTTAC
7400710 ATAA--TAC
1 ATAACTTAC
**
7400717 GCAACTTAC
1 ATAACTTAC
*
7400726 ACAACTTAC
1 ATAACTTAC
*
7400735 ACAACTTAC
1 ATAACTTAC
*
7400744 ATAACTTAT
1 ATAACTTAC
7400753 ATAA
1 ATAA
7400757 TAAATAACTT
Statistics
Matches: 87, Mismatches: 13, Indels: 20
0.73 0.11 0.17
Matches are distributed among these distances:
7 10 0.11
8 1 0.01
9 61 0.70
10 14 0.16
11 1 0.01
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7400688 original size:16 final size:16
Alignment explanation
Indices: 7400669--7400705 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7400659 ACTCTACATA
* *
7400669 ATAATACATAACTTAC
1 ATAAGACATAACGTAC
7400685 ATAAGACATAACGTAC
1 ATAAGACATAACGTAC
7400701 ATAAG
1 ATAAG
7400706 TTTCATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.16, G:0.08, T:0.24
Consensus pattern (16 bp):
ATAAGACATAACGTAC
Found at i:7406248 original size:21 final size:21
Alignment explanation
Indices: 7406222--7406269 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7406212 CAACAACTTA
*
7406222 AAGCAGACGCGGCAGCGAGAG
1 AAGCAGACGCCGCAGCGAGAG
*
7406243 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGACGCCGCAGCGAGAG
7406264 AAGCAG
1 AAGCAG
7406270 CGATAGAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.23, G:0.42, T:0.00
Consensus pattern (21 bp):
AAGCAGACGCCGCAGCGAGAG
Found at i:7406271 original size:12 final size:12
Alignment explanation
Indices: 7406233--7406281 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
7406223 AGCAGACGCG
7406233 GCAGCGAGAGAA
1 GCAGCGAGAGAA
**
7406245 GCA--GAG-GCC
1 GCAGCGAGAGAA
7406254 GCAGCGAGAGAA
1 GCAGCGAGAGAA
*
7406266 GCAGCGATAGAA
1 GCAGCGAGAGAA
7406278 GCAG
1 GCAG
7406282 AGGTTCAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
9 4 0.14
10 3 0.10
11 3 0.10
12 19 0.66
ACGTcount: A:0.37, C:0.20, G:0.41, T:0.02
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:7406736 original size:43 final size:42
Alignment explanation
Indices: 7406689--7406780 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
7406679 ATCAAACAGT
* *
7406689 GGCGTTTGTGAAATAAGCACCGCTAAAGAACA-CTACTTTTAGC
1 GGCGTTTGTG-AACAAGCACCGCTAAAGAACATC-ACTTTTAGA
* * *
7406732 GGCGTTTTTGAACAAGCGCCGCTATAGAACATCACTTTTAGA
1 GGCGTTTGTGAACAAGCACCGCTAAAGAACATCACTTTTAGA
7406774 GGCGTTT
1 GGCGTTT
7406781 TCTTCCAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 33 0.77
43 10 0.23
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (42 bp):
GGCGTTTGTGAACAAGCACCGCTAAAGAACATCACTTTTAGA
Found at i:7406761 original size:42 final size:42
Alignment explanation
Indices: 7406689--7406891 Score: 148
Period size: 43 Copynumber: 4.8 Consensus size: 42
7406679 ATCAAACAGT
* * *
7406689 GGCGTTTGTGAAATAAGCACCGCTAAAGAACA-CTACTTTTAGC
1 GGCGTTTTTG-AACAAGCGCCGCTAAAGAACATC-ACTTTTAGC
* *
7406732 GGCGTTTTTGAACAAGCGCCGCTATAGAACATCACTTTTAGA
1 GGCGTTTTTGAACAAGCGCCGCTAAAGAACATCACTTTTAGC
** *
7406774 GGCGTTTTCT-TCCAAAGCGCCGCTAAAGAACATGA-TCTTTAGC
1 GGCGTTTT-TGAAC-AAGCGCCGCTAAAGAACATCACT-TTTAGC
** * *
7406817 GGCGTTTATT-TCCTTAGCGCCGCTAAAGAACATGA-TCTTTAGC
1 GGCGTTT-TTGAAC-AAGCGCCGCTAAAGAACATCACT-TTTAGC
***
7406860 GGCGTTTATT-TTTAAGCGCCGCTAAAGAACAT
1 GGCGTTT-TTGAACAAGCGCCGCTAAAGAACAT
7406892 GGTCTTTAGT
Statistics
Matches: 140, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
42 54 0.39
43 85 0.61
44 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
GGCGTTTTTGAACAAGCGCCGCTAAAGAACATCACTTTTAGC
Found at i:7406892 original size:42 final size:41
Alignment explanation
Indices: 7406702--7407013 Score: 317
Period size: 42 Copynumber: 7.4 Consensus size: 41
7406692 GTTTGTGAAA
* **
7406702 TAAGCACCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAA
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TT
* * * * *
7406744 CAAGCGCCGCTATAGAACATCA-CTTTTAGAGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TT-T
*
7406787 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTT--T
7406831 T-AGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTT
* *
7406872 TAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCGTTTATTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTT
* * *
7406914 TTAGCGCCACTAAAGAACATGATCTTTAGCGGTGTTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
* *
7406955 CTAAGCGCCGCTAAAGAACATGATCTTTAGAGGCTTTTTTTCT
1 -TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT-T
*
7406998 GTAAGCGCCGCAAAAG
1 -TAAGCGCCGCTAAAG
7407014 TTTGCGACGT
Statistics
Matches: 235, Mismatches: 26, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.03
42 137 0.58
43 88 0.37
44 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (41 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
Found at i:7411421 original size:18 final size:18
Alignment explanation
Indices: 7411395--7411429 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7411385 GCGGAGTAAA
*
7411395 AAATACAAATTTAAATCC
1 AAATACAAATTCAAATCC
*
7411413 AAATCCAAATTCAAATC
1 AAATACAAATTCAAATC
7411430 TGAATGGTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.20, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATACAAATTCAAATCC
Found at i:7411556 original size:3 final size:3
Alignment explanation
Indices: 7411548--7411590 Score: 59
Period size: 3 Copynumber: 14.3 Consensus size: 3
7411538 GAGTACCAAT
* * *
7411548 TCA TCA TCA TCA ACA TTA TCA TCA TCT TCA TCA TCA TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
7411591 TAAGGACATC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.37
Consensus pattern (3 bp):
TCA
Found at i:7416311 original size:43 final size:42
Alignment explanation
Indices: 7416237--7416406 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 42
7416227 ATAGGATTTC
* *
7416237 CGATATGT-ATTATCGTGTACGACCACGTCTGGGACGTTGGCAT
1 CGAT-TGTGATTA-CGTGTAAGACCACGTCTGGGACATTGGCAT
* *
7416280 CGACTTGTGTTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGA-TTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
* * **
7416323 CGTATT-TGATT-CGTGTAAGACTC-TGTTTGGGACAACGGCAT
1 CG-ATTGTGATTACGTGTAAGAC-CACGTCTGGGACATTGGCAT
* *
7416364 CGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGAT-TGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
7416407 TGTACGAGTC
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
40 2 0.02
41 28 0.27
42 11 0.10
43 59 0.56
44 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
CGATTGTGATTACGTGTAAGACCACGTCTGGGACATTGGCAT
Found at i:7425957 original size:14 final size:12
Alignment explanation
Indices: 7425926--7425954 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7425916 TTGTTTCTAT
7425926 TATATGTACATG
1 TATATGTACATG
7425938 TATATGTACATG
1 TATATGTACATG
7425950 TATAT
1 TATAT
7425955 ATGACTGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (12 bp):
TATATGTACATG
Found at i:7434026 original size:6 final size:6
Alignment explanation
Indices: 7434015--7434040 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7434005 TCTAAATTCA
7434015 CATTGC CATTGC CATTGC CATTGC CA
1 CATTGC CATTGC CATTGC CATTGC CA
7434041 AATACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (6 bp):
CATTGC
Found at i:7440111 original size:126 final size:123
Alignment explanation
Indices: 7439926--7440276 Score: 560
Period size: 126 Copynumber: 2.8 Consensus size: 123
7439916 TAATTTTGAG
**
7439926 TTGACGTTTCTGATAAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
7439991 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAAT-A--ATTTTT
* *
7440052 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGTAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
* * * * *
7440117 AAATCGCGGCCTCGT-CAGCGTGCTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGA-CGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTTTT
*
7440175 TTGACGTTTCTGAGCAAATAATATAAAATTGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
*
7440240 AAATCGCGCCCTCGTGGACGCGTTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
7440277 CATGTTTGGG
Statistics
Matches: 207, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
123 99 0.48
124 1 0.00
125 2 0.01
126 105 0.51
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.33
Consensus pattern (123 bp):
TTGACGTTTCTGAGCAAATAATATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTG
AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCACGGAAGAAATAATTTTT
Found at i:7443636 original size:116 final size:116
Alignment explanation
Indices: 7443307--7443639 Score: 623
Period size: 115 Copynumber: 2.9 Consensus size: 116
7443297 TGATAAATTG
7443307 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
7443372 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
*
7443423 TATTAAGTC-AAAAATAGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
7443487 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
* *
7443538 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTATTTGT
1 TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
7443603 TAGTACTAGTCAAAACATTTTTCCAAATCTAACATTA
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTA
7443640 CGTTAAGGTT
Statistics
Matches: 211, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
115 114 0.54
116 97 0.46
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (116 bp):
TATTAAGTCAAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
Found at i:7443702 original size:29 final size:29
Alignment explanation
Indices: 7443665--7443768 Score: 130
Period size: 29 Copynumber: 3.7 Consensus size: 29
7443655 TTTTAAGTTA
*
7443665 AGGGTTTAGTGTTTTTAATTAAATTAGGTT
1 AGGG-TTAGGGTTTTTAATTAAATTAGGTT
7443695 AGGGTTAGGGTTTTTAATT-AA--A--TT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
7443719 A-GGTTAGGGTTTTTAATTAAATTAGGTT
1 AGGGTTAGGGTTTTTAATTAAATTAGGTT
*
7443747 AAGGTTAGGGTTTTTAAGTTAA
1 AGGGTTAGGGTTTTTAA-TTAA
7443769 GGGTTTAGGG
Statistics
Matches: 66, Mismatches: 1, Indels: 14
0.81 0.01 0.17
Matches are distributed among these distances:
23 17 0.26
24 5 0.08
26 2 0.03
28 5 0.08
29 29 0.44
30 8 0.12
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
AGGGTTAGGGTTTTTAATTAAATTAGGTT
Found at i:7443709 original size:51 final size:52
Alignment explanation
Indices: 7443667--7443964 Score: 366
Period size: 51 Copynumber: 5.8 Consensus size: 52
7443657 TTAAGTTAAG
*
7443667 GGTTTAGTGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTA
1 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA-TA
* *
7443720 GG-TTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAAGTT-AA-G
1 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA-TTAAATA
*
7443770 GGTTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTA
1 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAA-TA
* *
7443823 GG-TTAGGGTTTTTAATT---TTAAGTTAATGGTTTAGGGTTTTTAATTAAATTA
1 GGTTTAGGGTTTTTAATTAAATTAGGTT-A-GGGTTAGGGTTTTTAATTAAA-TA
* * * *
7443874 GG-TTAAGGTTTTTAATTAAATTAGGCTAAGGTTAGGGTTTTTAAGTT-AA-G
1 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAA-TTAAATA
7443924 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGG-TAGGGTTTT
1 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTT
7443965 ACTATCACAA
Statistics
Matches: 215, Mismatches: 18, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
49 6 0.03
50 16 0.07
51 106 0.49
52 73 0.34
53 9 0.04
54 5 0.02
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (52 bp):
GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATA
Found at i:7443763 original size:103 final size:102
Alignment explanation
Indices: 7443636--7443964 Score: 422
Period size: 103 Copynumber: 3.2 Consensus size: 102
7443626 CAAATCTAAC
* **
7443636 ATTACGTTAAGGTTAGAATTTTTAAGTTAAGGGTTTAGTGTTTTTAATTAAATTAGGTTAGGGTT
1 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTAG-GTTTTTAATTAAATTAGGTTAGGGTT
7443701 AGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAA
65 AGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAA
*
7443739 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGAGTT
1 ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTA-GGTTTTTAATTAAATTAGGTTAGGGTT
7443804 AGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATT--
65 AGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAA
* * * * *
7443840 -TTAAGTTAATGGTTTAGGGTTTTTAA-TTAAATTAGGTTAAGGTTTTTAATTAAATTAGGCTAA
1 ATTAGGTTAA-GG-TTAGGGTTTTTAAGTT-AA--GGGTTTAGGTTTTTAATTAAATTAGGTTAG
*
7443903 GGTTAGGGTTTTTAAGTT-AA--GGGTTTAGGGTTTTTAATTAA
61 GGTTAGGGTTTTTAA-TTAAATTAGG-TTAGGGTTTTTAATTAA
*
7443944 ATTAGGTT-AGGGTAGGGTTTT
1 ATTAGGTTAAGGTTAGGGTTTT
7443965 ACTATCACAA
Statistics
Matches: 202, Mismatches: 13, Indels: 23
0.85 0.05 0.10
Matches are distributed among these distances:
100 8 0.04
101 6 0.03
102 39 0.19
103 134 0.66
104 9 0.04
105 6 0.03
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.46
Consensus pattern (102 bp):
ATTAGGTTAAGGTTAGGGTTTTTAAGTTAAGGGTTTAGGTTTTTAATTAAATTAGGTTAGGGTTA
GGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAA
Found at i:7443778 original size:74 final size:74
Alignment explanation
Indices: 7443695--7443956 Score: 382
Period size: 74 Copynumber: 3.5 Consensus size: 74
7443685 AAATTAGGTT
7443695 AGGG-TTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTT
7443759 TTTAAGTTA
66 TTTAAGTTA
*
7443768 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTTAGGGTTTTTAATT-AA--A--TTAG-GTTAGGGTTTTTAATTAAATTAGGTTAAGGTT
*****
7443833 TTTAATTTTAAGTTA
60 AGGGTTTTTAAGTTA
* * *
7443848 ATGGTTTAGGGTTTTTAATTAAATTAGGTTAAGGTTTTTAATTAAATTAGGCTAAGGTTAGGGTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTT
7443913 TTTAAGTTA
66 TTTAAGTTA
7443922 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGT
1 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGT
7443957 AGGGTTTTAC
Statistics
Matches: 165, Mismatches: 17, Indels: 13
0.85 0.09 0.07
Matches are distributed among these distances:
73 4 0.02
74 87 0.53
75 6 0.04
77 2 0.01
79 6 0.04
80 60 0.36
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (74 bp):
AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTT
TTTAAGTTA
Found at i:7443779 original size:22 final size:20
Alignment explanation
Indices: 7443744--7443789 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 20
7443734 ATTAAATTAG
7443744 GTTAAGGTTAGGGTTTTTAA
1 GTTAAGGTTAGGGTTTTTAA
7443764 GTTAAGGGTTTAGGGTTTTTAA
1 GTTAA-GG-TTAGGGTTTTTAA
7443786 -TTAA
1 GTTAA
7443790 ATTAGGTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 5 0.21
21 6 0.25
22 13 0.54
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (20 bp):
GTTAAGGTTAGGGTTTTTAA
Found at i:7443805 original size:29 final size:29
Alignment explanation
Indices: 7443773--7443922 Score: 118
Period size: 23 Copynumber: 5.6 Consensus size: 29
7443763 AGTTAAGGGT
7443773 TTAGGGTTTTTAATTAAATTAGGTTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
7443802 TTAGGGTTTTTAATT-AA--A--TTAG-G
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
*
7443825 TTAGGGTTTTTAATT---TTAAGTTAATG-G
1 TTAGGGTTTTTAATTAAATTAGGTT-A-GAG
7443852 TTTAGGGTTTTTAATTAAATTAGGTT--A-
1 -TTAGGGTTTTTAATTAAATTAGGTTAGAG
*
7443879 --A-GGTTTTTAATTAAATTAGGCTA-AGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGA-G
7443905 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAA-TTAA
7443923 GGGTTTAGGG
Statistics
Matches: 101, Mismatches: 2, Indels: 35
0.73 0.01 0.25
Matches are distributed among these distances:
23 37 0.37
24 6 0.06
25 2 0.02
26 2 0.02
27 2 0.02
28 18 0.18
29 24 0.24
30 4 0.04
31 6 0.06
ACGTcount: A:0.30, C:0.01, G:0.22, T:0.47
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGAG
Found at i:7443903 original size:23 final size:23
Alignment explanation
Indices: 7443697--7443906 Score: 172
Period size: 23 Copynumber: 8.4 Consensus size: 23
7443687 ATTAGGTTAG
*
7443697 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAAGGTTTTTAATTAAATTA
*
7443720 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAAGGTTTTTAATTAAATTA
*
7443743 GGTTAAGGTTAGGGTTT--TTAAGTTAA
1 GGTTAAGGTT----TTTAATTAAATT-A
*
7443769 GGGTTTAGGGTTTTTAATTAAATTA
1 -GG-TTAAGGTTTTTAATTAAATTA
7443794 GGTTAGAGTTAGGGTTTTTAATTAAATTA
1 GGTT--A---A-GGTTTTTAATTAAATTA
* *
7443823 GGTTAGGGTTTTTAATTTTAAGTTAA
1 GGTTAAGGTTTTTAA--TTAAATT-A
*
7443849 TGGTTTAGGGTTTTTAATTAAATTA
1 -GG-TTAAGGTTTTTAATTAAATTA
7443874 GGTTAAGGTTTTTAATTAAATTA
1 GGTTAAGGTTTTTAATTAAATTA
*
7443897 GGCTAAGGTT
1 GGTTAAGGTT
7443907 AGGGTTTTTA
Statistics
Matches: 157, Mismatches: 10, Indels: 40
0.76 0.05 0.19
Matches are distributed among these distances:
23 72 0.46
24 7 0.04
25 15 0.10
26 14 0.09
27 8 0.05
28 20 0.13
29 21 0.13
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (23 bp):
GGTTAAGGTTTTTAATTAAATTA
Found at i:7445849 original size:11 final size:11
Alignment explanation
Indices: 7445832--7445880 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
7445822 AATCATTTAT
7445832 TAATAAAATAA
1 TAATAAAATAA
* **
7445843 TACTAAAAATCT
1 TAAT-AAAATAA
7445855 TAATAAAATAA
1 TAATAAAATAA
*
7445866 TAATTAAATAA
1 TAATAAAATAA
7445877 TAAT
1 TAAT
7445881 TATCTAATTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:7447181 original size:30 final size:30
Alignment explanation
Indices: 7447147--7447208 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
7447137 ACTTATTTTA
7447147 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
7447177 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
7447207 TT
1 TT
7447209 ACTTGCTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:7455810 original size:8 final size:8
Alignment explanation
Indices: 7455797--7455829 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7455787 AAATAATTTT
7455797 TTATAAAA
1 TTATAAAA
7455805 TTATAAAA
1 TTATAAAA
*
7455813 -TATATAA
1 TTATAAAA
7455820 TTATAAAA
1 TTATAAAA
7455828 TT
1 TT
7455830 CTACAAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTATAAAA
Found at i:7455816 original size:15 final size:15
Alignment explanation
Indices: 7455798--7455828 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7455788 AATAATTTTT
7455798 TATAAAATTATAAAA
1 TATAAAATTATAAAA
*
7455813 TATATAATTATAAAA
1 TATAAAATTATAAAA
7455828 T
1 T
7455829 TCTACAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
TATAAAATTATAAAA
Found at i:7456090 original size:15 final size:15
Alignment explanation
Indices: 7456070--7456137 Score: 51
Period size: 15 Copynumber: 4.9 Consensus size: 15
7456060 AAATATGTTT
7456070 TTTAATATTTAAATA
1 TTTAATATTTAAATA
*
7456085 TTTAATA-TTACAATT
1 TTTAATATTTA-AATA
*
7456100 TTTAAT-TTT-TA-A
1 TTTAATATTTAAATA
7456112 TTTAA-ATTT-AATA
1 TTTAATATTTAAATA
*
7456125 TTTTAT-TTTAAAT
1 TTTAATATTTAAAT
7456138 GAACCTAATT
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
12 9 0.21
13 9 0.21
14 6 0.14
15 18 0.43
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTAATATTTAAATA
Found at i:7456091 original size:7 final size:7
Alignment explanation
Indices: 7456070--7456127 Score: 50
Period size: 7 Copynumber: 8.4 Consensus size: 7
7456060 AAATATGTTT
7456070 TTTAATA
1 TTTAATA
7456077 TTTAAATA
1 TTT-AATA
7456085 TTTAATA
1 TTTAATA
* *
7456092 TTACAATT
1 TT-TAATA
7456100 TTTAAT-
1 TTTAATA
*
7456106 TTTTA-A
1 TTTAATA
7456112 TTTAA-A
1 TTTAATA
7456118 TTTAATA
1 TTTAATA
7456125 TTT
1 TTT
7456128 TATTTTAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
6 14 0.33
7 16 0.38
8 12 0.29
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTAATA
Found at i:7456134 original size:19 final size:18
Alignment explanation
Indices: 7456100--7456137 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
7456090 TATTACAATT
7456100 TTTAATTTTTAATTTAAA
1 TTTAATTTTTAATTTAAA
*
7456118 TTTAATATTTTATTTTAAA
1 TTTAAT-TTTTAATTTAAA
7456137 T
1 T
7456138 GAACCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTAATTTTTAATTTAAA
Found at i:7459278 original size:17 final size:18
Alignment explanation
Indices: 7459234--7459280 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7459224 TTATATTATA
7459234 TTATATCATATCATATAGT
1 TTATAT-ATATCATATAGT
* *
7459253 ATATAATATATTA-ATAGT
1 TTAT-ATATATCATATAGT
7459271 TTATATATAT
1 TTATATATAT
7459281 GCATTAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 6 0.25
18 8 0.33
19 8 0.33
20 2 0.08
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (18 bp):
TTATATATATCATATAGT
Found at i:7466182 original size:28 final size:28
Alignment explanation
Indices: 7466111--7466195 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 28
7466101 CTACATCTTT
* *
7466111 TATTATAATCTATATTA-TAATAGTTATA
1 TATTATAAT-TTTTTTAGTAATAGTTATA
* **
7466139 TATGAACTAACATTTTTAGTAATAGTTATA
1 TAT-TA-TAATTTTTTTAGTAATAGTTATA
*
7466169 TATTATAATTTTTTTAAGTATTAGTTA
1 TATTATAATTTTTTT-AGTAATAGTTA
7466196 CAATAACACA
Statistics
Matches: 44, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
28 11 0.25
29 16 0.36
30 17 0.39
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.51
Consensus pattern (28 bp):
TATTATAATTTTTTTAGTAATAGTTATA
Found at i:7475746 original size:13 final size:14
Alignment explanation
Indices: 7475728--7475791 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 14
7475718 ACCTACGTGT
7475728 TTCGCACATAT-GG
1 TTCGCACATATGGG
*
7475741 TTCGCACTTA-GGG
1 TTCGCACATATGGG
* *
7475754 TTCACATATATGGG
1 TTCGCACATATGGG
* *
7475768 TTCACACCTATGGG
1 TTCGCACATATGGG
*
7475782 TTTGCACATA
1 TTCGCACATA
7475792 CAAGGGGGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
13 18 0.45
14 22 0.55
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (14 bp):
TTCGCACATATGGG
Found at i:7475824 original size:23 final size:23
Alignment explanation
Indices: 7475797--7475906 Score: 69
Period size: 23 Copynumber: 4.7 Consensus size: 23
7475787 ACATACAAGG
7475797 GGGTTCGCATAAATACATATACA
1 GGGTTCGCATAAATACATATACA
* * * *
7475820 GGGTTCGCATAGTACACATAAATA
1 GGGTTCGCATA-AATACATATACA
* * * *
7475844 GAGTTCACGT-AATAACATGTACA
1 GGGTTCGCATAAAT-ACATATACA
* * * *
7475867 AGGTTCGCATATACACAAATATATA
1 GGGTTCGCATA-A-ATACATATACA
7475892 GGGTTCGCATAAATA
1 GGGTTCGCATAAATA
7475907 GTCATGTAGG
Statistics
Matches: 60, Mismatches: 22, Indels: 10
0.65 0.24 0.11
Matches are distributed among these distances:
22 1 0.02
23 25 0.42
24 16 0.27
25 17 0.28
26 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.26
Consensus pattern (23 bp):
GGGTTCGCATAAATACATATACA
Found at i:7476007 original size:45 final size:44
Alignment explanation
Indices: 7475889--7476009 Score: 113
Period size: 45 Copynumber: 2.7 Consensus size: 44
7475879 ACACAAATAT
* * *
7475889 ATAGGGTTCGCATAAATAGTCATGTAGGGTTTGCATGAATAACAC
1 ATAGAGTTCGCATAGATATTCATGTAGGG-TTGCATGAATAACAC
* * * *
7475934 ATA-AGGTTTGCATAGCA-ATACATTTAGGGTTGACATGTATAAACAC
1 ATAGA-GTTCGCATAG-ATATTCATGTAGGGTTG-CATGAAT-AACAC
7475980 ATAGAGTTCGCAT-GATATTCATGTAGGGTT
1 ATAGAGTTCGCATAGATATTCATGTAGGGTT
7476010 TGCAAAGATA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
44 4 0.07
45 39 0.65
46 16 0.27
47 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (44 bp):
ATAGAGTTCGCATAGATATTCATGTAGGGTTGCATGAATAACAC
Found at i:7476123 original size:29 final size:28
Alignment explanation
Indices: 7476053--7476123 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
7476043 CCTATATGAT
*
7476053 TTTGCATAT-GGGTTCGCATACAAAAGG
1 TTTGCATATAGGGTTCGCACACAAAAGG
* * *
7476080 TTTGCCTATACGGTTCGCACACAAAGGGG
1 TTTGCATATAGGGTTCGCACACAAA-AGG
*
7476109 TTTGCATTTAGGGTT
1 TTTGCATATAGGGTT
7476124 TTCTTATAGG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 8 0.23
28 13 0.37
29 14 0.40
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (28 bp):
TTTGCATATAGGGTTCGCACACAAAAGG
Found at i:7476170 original size:15 final size:15
Alignment explanation
Indices: 7476150--7476181 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7476140 CATGGAGGAT
7476150 TTTGCACACAGGGAG
1 TTTGCACACAGGGAG
7476165 TTTGCACACAGGGAG
1 TTTGCACACAGGGAG
7476180 TT
1 TT
7476182 CGCCTATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (15 bp):
TTTGCACACAGGGAG
Found at i:7477850 original size:27 final size:27
Alignment explanation
Indices: 7477820--7477871 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7477810 GGCCAATTAC
*
7477820 ATTGGCGGCACTAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
7477847 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
7477872 GACTAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.33, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:7478468 original size:19 final size:19
Alignment explanation
Indices: 7478444--7478539 Score: 115
Period size: 19 Copynumber: 5.2 Consensus size: 19
7478434 TCTAATTAAG
* *
7478444 TAATAACTCTGTTTTAATT
1 TAATAACTCTATTTTCATT
* *
7478463 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
*
7478481 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
7478500 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
7478518 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
7478537 TAA
1 TAA
7478540 AATATAAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
18 29 0.46
19 34 0.54
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:7478485 original size:37 final size:37
Alignment explanation
Indices: 7478444--7478539 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
7478434 TCTAATTAAG
*
7478444 TAATAACTCTGTTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
7478481 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
7478518 TAATAACTCTATTTTCATTTAA
1 TAATAACTCTATTTTAATTTAA
7478540 AATATAAAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.36, C:0.14, G:0.01, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:7478787 original size:28 final size:27
Alignment explanation
Indices: 7478725--7478789 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
7478715 TAAGGGAATA
*
7478725 TATTAAATTTATAAAATTAAAATAGTT
1 TATTAAATTTATAAAATTAAAATAGGT
* *
7478752 TAATTTAATTTTTTAAAATTAAAATAGAGT
1 T-A-TTAAATTTATAAAATTAAAATAG-GT
7478782 TATTAAAT
1 TATTAAAT
7478790 GAGAATAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
27 1 0.03
28 6 0.19
29 22 0.71
30 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (27 bp):
TATTAAATTTATAAAATTAAAATAGGT
Found at i:7478789 original size:19 final size:19
Alignment explanation
Indices: 7478767--7478830 Score: 85
Period size: 19 Copynumber: 3.4 Consensus size: 19
7478757 TAATTTTTTA
7478767 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
7478786 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
*
7478804 ACATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
7478823 AAATTAAA
1 AAATTAAA
7478831 CTATTTTAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
18 14 0.39
19 22 0.61
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.36
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:7479172 original size:27 final size:27
Alignment explanation
Indices: 7479141--7479217 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
7479131 TTTTAATCCT
7479141 TTGGCACCATTGGTGCCGCCAATCAT-A
1 TTGGCACCATTGGTGCCGCCAATC-TCA
*
7479168 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* *
7479195 TTGGCACCTTTGGTGTCGCCAAT
1 TTGGCACCATTGGTGCCGCCAAT
7479218 GTGATTGGGC
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.17, C:0.30, G:0.23, T:0.30
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:7479325 original size:27 final size:28
Alignment explanation
Indices: 7479272--7479336 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 28
7479262 ATTTTTTGAT
*
7479272 ATATTTT-AGTAAATAAAAAAAATTTATA
1 ATATTTTGA-TAAATAAAAAAAAGTTATA
7479300 ATATTTTGATAAAT-AAAAAAAGTTATA
1 ATATTTTGATAAATAAAAAAAAGTTATA
7479327 ATATTTTGAT
1 ATATTTTGAT
7479337 TATTTTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 22 0.63
28 12 0.34
29 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAAGTTATA
Found at i:7480954 original size:13 final size:13
Alignment explanation
Indices: 7480930--7480954 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7480920 TATAAAAAGG
7480930 TTTTACTAAAATA
1 TTTTACTAAAATA
7480943 TTTTACTAAAAT
1 TTTTACTAAAAT
7480955 TATGATTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTACTAAAATA
Found at i:7486318 original size:90 final size:90
Alignment explanation
Indices: 7486183--7486424 Score: 256
Period size: 91 Copynumber: 2.7 Consensus size: 90
7486173 AATGGCTTAT
* * * * *
7486183 CCACAAATATGCTAGCAGCTTTTACCTACAAACTCGTCGTGTATTCACAACTATTGACAGCATAT
1 CCACAAATATACTACCAACTTTTATCTACAAACCCGTCGTGTATTCACAACTATTGACAGCATAT
*
7486248 TAACCTCCAAACACTAGTGGTTTATC
66 TAACCTCCAAACACTAGTGATTTA-C
* * * ** *
7486274 CC-CAAATATACTTCCAACTTTTATCTA-TAACCACGTCGTGTATTCACAACTTACTGGTATCAT
1 CCACAAATATACTACCAACTTTTATCTACAAACC-CGTCGTGTATTCACAAC-TATTGACAGCAT
* *
7486337 ATTAACCTGCAAACACTGGTGATTTAC
64 ATTAACCTCCAAACACTAGTGATTTAC
* * * * *
7486364 CCATAAATCTACTAGCACCTTTTATCTACAAACCTGT-GTTGTATTCACAACTATTGACAGC
1 CCACAAATATACTACCAACTTTTATCTACAAACCCGTCG-TGTATTCACAACTATTGACAGC
7486425 GTACTAACTT
Statistics
Matches: 121, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
89 3 0.02
90 47 0.39
91 67 0.55
92 4 0.03
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (90 bp):
CCACAAATATACTACCAACTTTTATCTACAAACCCGTCGTGTATTCACAACTATTGACAGCATAT
TAACCTCCAAACACTAGTGATTTAC
Found at i:7492984 original size:2 final size:2
Alignment explanation
Indices: 7492977--7493002 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7492967 TTCTACTAGT
7492977 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
7493003 GTGGCTAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7495394 original size:25 final size:25
Alignment explanation
Indices: 7495358--7495405 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7495348 ATTTATAAGA
* *
7495358 TTTTAAATTAATAACAGTTTAATCT
1 TTTTAAATTAATAAAAATTTAATCT
7495383 TTTTAAGA-TAATAAAAATTTAAT
1 TTTTAA-ATTAATAAAAATTTAAT
7495406 TTAATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (25 bp):
TTTTAAATTAATAAAAATTTAATCT
Done.